Citrus Sinensis ID: 010140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MVAATATNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEccccEEEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEEEcccccHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHccHHHHHHHHccccccccHHHHHHHccccccHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHEcccccccEEEEEEEccccccccccEEEEEEccHHHHHHHcHHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccccHHHHHHHcccccccHHHHHcccccccHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEccccccEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHcccccccccHHEcEEccccEcccccccccccHHHHccccEccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccHHHcccccccHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHcccc
Coil and Loop (DISEMBL)
mvaatatnesdydsssssitvpdssrsfmsnlsfgsrrssislcsssaadqtslynshkphkaNQAAWEAMKRLRRAQGRVGLDHFRLLRRlgsgdignvylcqirnpmvglpqcfYAMKVVDREALAIRKKLHRADMEKVILTMldhpflptlyaeFEASHYSCLvmeycpggdlyaarqrqpgkrfgissAKFVFFLLFFFFynnlgfvhtdvtLFFNYRFYAAETLLALEYLHMMGIVyrdlkpenvlvredghimlsdfdlsfkcdvvpkllrpklsFEAIEKYekcsipscatpmqpvlscfssvshgkknkkKAVTVTTIreqvdgdhhdqellddpevvaepinarsksfvgtheylapevisgqghgsavdWWTLGVFLYEMlygttpfkgennEKTLINILkkpltfprigvssskEFEEVVKLQDLISKLLVknpkkrigslkgsveIKRHEFFKGINWALIrsikppevpnndlyckikkkvyvpklskqerdapyqipthhfdyf
Flexible Loop (DISEMBL)
mvaatatnesdydsssssitvpdssrSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLScfssvshgkknkkkavTVTTIreqvdgdhhdqellddPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLIskllvknpkkrigslkgsveikrhEFFKGINWalirsikppevpnndlyckIKKKvyvpklskqerdapyqiPTHHFDYF
Low Complexity Region (SEG)
MVAATATNEsdydsssssitvpdssrsFMsnlsfgsrrssislcsssAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKfvffllffffynnlgfvHTDVTLFFNYRFyaaetllaleylHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGkknkkkAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF
Disordered region (IsUnstruct)
*********************************************************************AMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS*************V******************************SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKL*******************
Disordered Region (DISOPRED)
************************************************************************************HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVV*************************************************************************************VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKK************************YF
Disordered Region (DISEMBL)
************************SRSFMSNLSFGSRRSSISLCSSSAADQTSLY************WEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS************TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF
Disordered Region (DISPRO)
**************************************************************ANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRP***********************PV********************************DQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCK**K**Y**********************F
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAATATNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q64FQ2	525	Protein kinase PINOID 2 O	yes	no	0.907	0.893	0.584	1e-169
Q94E49	493	Protein kinase PINOID 2 O	yes	no	0.924	0.969	0.556	1e-149
A2YBX5	589	Protein kinase G11A OS=Or	N/A	no	0.771	0.677	0.484	1e-116
Q0DCT8	589	Protein kinase G11A OS=Or	no	no	0.771	0.677	0.484	1e-116
Q9LFA2	934	Serine/threonine-protein	no	no	0.775	0.429	0.480	1e-112
P15792	609	Protein kinase PVPK-1 OS=	N/A	no	0.808	0.686	0.464	1e-111
O64682	438	Protein kinase PINOID OS=	no	no	0.835	0.986	0.449	1e-109
Q05999	578	Serine/threonine-protein	no	no	0.707	0.633	0.470	1e-103
Q2QM77	484	Protein kinase PINOID OS=	no	no	0.698	0.745	0.462	1e-101
P93025	915	Phototropin-2 OS=Arabidop	no	no	0.632	0.357	0.416	3e-86

>sp|Q64FQ2|PID2_ARATH Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1

 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 325/556 (58%), Positives = 377/556 (67%), Gaps = 87/556 (15%)

Query: 8   NESDYDSSSSSITVPDSSRS---FMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKAN 64
           NESDY+SS+     PDSSR      S+ +     SSIS  S+   +    YN  KPHKAN
Sbjct: 11  NESDYESSTVG---PDSSRRTSWLSSSFTASPSCSSISHLSNHGLNS---YNQSKPHKAN 64

Query: 65  QAAWEAMKRLRRAQGR-VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQ-CFYAMKVV 122
           Q AWEAM RLRR  GR VGL+HFRLL+RLGSGDIG+VYLCQIR    G P+  FYAMKVV
Sbjct: 65  QVAWEAMARLRRCCGRAVGLEHFRLLKRLGSGDIGSVYLCQIR----GSPETAFYAMKVV 120

Query: 123 DREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQR 182
           D+EA+A++KKL RA+MEK IL MLDHPF PTLYA FEASHYS LVMEYCPGGDLYA R R
Sbjct: 121 DKEAVAVKKKLGRAEMEKKILGMLDHPFCPTLYAAFEASHYSFLVMEYCPGGDLYAVRLR 180

Query: 183 QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY 242
           QP KRF ISS                             RFYAAETL+ALEYLHMMGIVY
Sbjct: 181 QPSKRFTISST----------------------------RFYAAETLVALEYLHMMGIVY 212

Query: 243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRP-------KLSFEAIEKYEKCSIPS 295
           RDLKPENVL+REDGH+MLSDFDLSFKCDVVP+ L         +   + I    KCS PS
Sbjct: 213 RDLKPENVLIREDGHVMLSDFDLSFKCDVVPQFLSDNDRDRGHQEDDDDISIRRKCSTPS 272

Query: 296 CAT-PMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLD------------- 341
           C T P+ PV+SCFS  S   + +KK V  TTI E   G     +  D             
Sbjct: 273 CTTTPLNPVISCFSPTS--SRRRKKNVVTTTIHENAAGTSDSVKSNDVSRTFSRSPSSCS 330

Query: 342 ------------DPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE 389
                        P + AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT G+FLYE
Sbjct: 331 RVSNGLRDISGGCPSIFAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGIFLYE 390

Query: 390 MLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           M++G TPFKG+NNEKTL+NILK PLTFP++ V+S KE+E++V  QDLI KLLVKNPKKR+
Sbjct: 391 MIFGRTPFKGDNNEKTLVNILKAPLTFPKVIVNSPKEYEDMVNAQDLIIKLLVKNPKKRL 450

Query: 450 GSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKK-----KVYVPK---LSKQ 501
           GSLKGS+EIKRHEFF+G+NWALIRSIKPP VP  +   K K        Y+P    +S++
Sbjct: 451 GSLKGSIEIKRHEFFEGVNWALIRSIKPPWVPKEETSHKTKGDNRSVNYYLPPRFMMSRK 510

Query: 502 ERDAPYQIPTHHFDYF 517
           ER+ PY + +++FDYF
Sbjct: 511 ERNEPYHV-SNYFDYF 525

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Plays a minor role in the regulation of cellular auxin efflux and cotyledon organogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q94E49|PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica GN=PID2 PE=2 SV=1

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 294/528 (55%), Positives = 350/528 (66%), Gaps = 50/528 (9%)

Query: 4   ATATNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKA 63
           A    ESDYDSS SS+T PDS RS++S++   S  S+ S    + A        +KPHKA
Sbjct: 2   AAIKEESDYDSSRSSLTAPDSRRSWISDIGSSSSVSARSFGGDTPASSCR----YKPHKA 57

Query: 64  NQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNP------MVGLPQCFY 117
           NQA WEA++RLR   GRVGL+HFRL+RRLGSGD+GNVYLC++R P            C Y
Sbjct: 58  NQAEWEAIRRLRAGAGRVGLEHFRLVRRLGSGDLGNVYLCRLREPWSSSSMTTTAGGCLY 117

Query: 118 AMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY 177
           AMKVVD++ALA RKKL RA++E+ IL  LDHPFLPTLYA+FEASHY+CLVME+CPGGDL+
Sbjct: 118 AMKVVDKDALAFRKKLRRAEVERDILRTLDHPFLPTLYADFEASHYACLVMEFCPGGDLH 177

Query: 178 AARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM 237
            ARQRQPG+RF +SS                             RFY AET+LALEYLHM
Sbjct: 178 VARQRQPGRRFTVSST----------------------------RFYVAETVLALEYLHM 209

Query: 238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCA 297
           MG+VYRDLKPENVLVR DGHIMLSDFDLS KCDVVPKLLRP  S  A  K       SC 
Sbjct: 210 MGVVYRDLKPENVLVRGDGHIMLSDFDLSLKCDVVPKLLRPARSAAAGGKPPLPPPSSCV 269

Query: 298 TP-MQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINA---- 352
            P +QPVLSC     H   + K+                + E  +      E +      
Sbjct: 270 PPTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVA 329

Query: 353 -RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
            RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVF+YEMLYG TPFKGE+NEKTLINI+K
Sbjct: 330 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFMYEMLYGRTPFKGESNEKTLINIIK 389

Query: 412 KPLTFPRI-GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
           +P+TFPR+ G +++ E+EE+   QDL+ +LL KNPKKR+GS  GS E+KRH FFKG+NWA
Sbjct: 390 QPVTFPRLAGAAAAGEWEEMKTAQDLMLQLLAKNPKKRLGSTMGSAEVKRHPFFKGVNWA 449

Query: 471 LIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQI-PTHHFDYF 517
           L+RS++              KKV    +SK+ER  PY   P +HFDYF
Sbjct: 450 LVRSVR--PPEVPAPPAPAPKKVMT--MSKKERQEPYNYRPENHFDYF 493

Serine/threonine-protein kinase involved in the regulation of auxin signaling.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/475 (48%), Positives = 288/475 (60%), Gaps = 76/475 (16%)

Query: 26  RSFMSNLSFGSRRSSISLCSSSAADQT---SLYNSHKPHKANQAAWEAMKRLRRAQGRVG 82
           RS      F S R   S  SS  +D++   S+ +  KPHKAN + WEA++ +R   G +G
Sbjct: 133 RSETGERGFSSSRCRPST-SSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTRDGILG 191

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L HF+LL++LG GDIG+VYL ++        + ++AMKV+D+ +LA RKKL RA  EK I
Sbjct: 192 LSHFKLLKKLGCGDIGSVYLSELNGT-----KSYFAMKVMDKASLASRKKLLRAQTEKEI 246

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  LDHPFLPTLY  FE   +SCLVME+CPGGDL+  RQRQ GK F   + K        
Sbjct: 247 LQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVK-------- 298

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                               FY AE LLA+EYLHM+GI+YRDLKPENVLVREDGHIMLSD
Sbjct: 299 --------------------FYVAEILLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSD 338

Query: 263 FDLSFKCDVVPKLLR-PKLSFEAIEKYEK------------CSI-PSCATPMQPVLSCFS 308
           FDLS +C V P L+R      EA+ K  +            C I PSCATP     +CF 
Sbjct: 339 FDLSLRCAVSPTLIRSSNPDAEALRKNNQAYCVQPACVEPSCMIQPSCATPT----TCFG 394

Query: 309 S--VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAP 366
               S  KK++K    V              ++   PE++AEP +ARS SFVGTHEYLAP
Sbjct: 395 PRFFSKSKKDRKPKPEVVN------------QVSPWPELIAEPSDARSMSFVGTHEYLAP 442

Query: 367 EVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKE 426
           E+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N  TL N++ +PL FP   V S   
Sbjct: 443 EIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPLRFPEYPVVS--- 499

Query: 427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
                  +DLI  LLVK P++R+G  +G+ EIK+H FF+G+NWALIR   PPEVP
Sbjct: 500 ----FSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVP 550

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/475 (48%), Positives = 288/475 (60%), Gaps = 76/475 (16%)

Query: 26  RSFMSNLSFGSRRSSISLCSSSAADQT---SLYNSHKPHKANQAAWEAMKRLRRAQGRVG 82
           RS      F S R   S  SS  +D++   S+ +  KPHKAN + WEA++ +R   G +G
Sbjct: 133 RSETGERGFSSSRCRPST-SSDVSDESACSSISSVTKPHKANDSRWEAIQMIRTRDGILG 191

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L HF+LL++LG GDIG+VYL ++        + ++AMKV+D+ +LA RKKL RA  EK I
Sbjct: 192 LSHFKLLKKLGCGDIGSVYLSELSGT-----KSYFAMKVMDKASLASRKKLLRAQTEKEI 246

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  LDHPFLPTLY  FE   +SCLVME+CPGGDL+  RQRQ GK F   + K        
Sbjct: 247 LQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVK-------- 298

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                               FY AE LLA+EYLHM+GI+YRDLKPENVLVREDGHIMLSD
Sbjct: 299 --------------------FYVAEILLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSD 338

Query: 263 FDLSFKCDVVPKLLR-PKLSFEAIEKYEK------------CSI-PSCATPMQPVLSCFS 308
           FDLS +C V P L+R      EA+ K  +            C I PSCATP     +CF 
Sbjct: 339 FDLSLRCAVSPTLIRSSNPDAEALRKNNQAYCVQPACVEPSCMIQPSCATPT----TCFG 394

Query: 309 S--VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAP 366
               S  KK++K    V              ++   PE++AEP +ARS SFVGTHEYLAP
Sbjct: 395 PRFFSKSKKDRKPKPEVVN------------QVSPWPELIAEPSDARSMSFVGTHEYLAP 442

Query: 367 EVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKE 426
           E+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N  TL N++ +PL FP   V S   
Sbjct: 443 EIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPLRFPEYPVVS--- 499

Query: 427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
                  +DLI  LLVK P++R+G  +G+ EIK+H FF+G+NWALIR   PPEVP
Sbjct: 500 ----FSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVP 550

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFA2|KIPK_ARATH Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1

 Score =  407 bits (1045), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/472 (48%), Positives = 281/472 (59%), Gaps = 71/472 (15%)

Query: 27  SFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHF 86
           S  S  S G    S S+   S   + S  N  KPH +    WEA+K ++   G +GL HF
Sbjct: 481 SLSSKDSLGDYSRSTSISEESNLSRFSCGN--KPHMSMDVRWEAIKHIKVQYGSLGLRHF 538

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML 146
            LL++LG GDIG VYL +    ++G   C +A+KV+D E LA RKK  RA  E+ IL ML
Sbjct: 539 NLLKKLGCGDIGTVYLAE----LIGT-NCLFAIKVMDNEFLARRKKSPRAQAEREILKML 593

Query: 147 DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN 206
           DHPFLPTLYA+F + + SCLVMEYCPGGDL+  RQ+Q G+ F   +A             
Sbjct: 594 DHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFPEPAA------------- 640

Query: 207 NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                          RFY AE LLALEYLHM+GI+YRDLKPEN+LVREDGHIML+DFDLS
Sbjct: 641 ---------------RFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLS 685

Query: 267 FKCDVVPKLLRPK-------LSFEAIEKYEKCSIPSCATPMQPVLSCF-----SSVSHGK 314
            +C V P L+R                    C  P C T     +SCF     S+   G+
Sbjct: 686 LRCAVNPTLVRSNSPPGKDPARISGPYNTSNCIQPFCITEPSCQVSCFSPRLSSNQQQGR 745

Query: 315 KNKKKAVTVTTIREQVDGDH--HDQELLDD--PEVVAEPINARSKSFVGTHEYLAPEVIS 370
           K K+             GDH    Q+ L    P++VAEP  ARS SFVGTHEYLAPE+I 
Sbjct: 746 KPKR-------------GDHLSKTQQHLSRSLPQLVAEPTEARSNSFVGTHEYLAPEIIK 792

Query: 371 GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEV 430
           G+GHG+AVDWWT GV LYE+LYG TPFKG NN++TL N++ + L FP   + S       
Sbjct: 793 GEGHGAAVDWWTFGVLLYELLYGKTPFKGYNNDETLANVVLQNLKFPDSPLVS------- 845

Query: 431 VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN 482
            + +DLI  LLVK P+ R+GS KGSVEIKRH FF+G+NWALIR   PPE+P+
Sbjct: 846 FQAKDLIRGLLVKEPENRLGSEKGSVEIKRHPFFEGLNWALIRCAIPPELPD 897

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/480 (46%), Positives = 283/480 (58%), Gaps = 62/480 (12%)

Query: 16  SSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNS--------HKPHKANQAA 67
           S   +V  S  S ++N S  +     S+C +S     S  +S        +KPHKAN   
Sbjct: 151 SECASVDKSCESEVANSSDFNESRKTSICRASTGSDASDESSTSSLSSVLYKPHKANDIR 210

Query: 68  WEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL 127
           WEA++ +R   G + + HFRLL++LG GDIG+VYL ++           +AMKV+++  L
Sbjct: 211 WEAIQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTS-----FAMKVMNKTEL 265

Query: 128 AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
           A RKKL RA  E+ IL  LDHPFLPTLY  FE   +SCLVME+CPGGDL+A RQRQPGK 
Sbjct: 266 ANRKKLLRAQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKY 325

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
           F   +                             RFY AE LL+LEYLHM+GI+YRDLKP
Sbjct: 326 FSEHAV----------------------------RFYVAEVLLSLEYLHMLGIIYRDLKP 357

Query: 248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATP---MQPVL 304
           ENVLVREDGHIMLSDFDLS +C V P L++   + +  +    C  PSC  P   MQP  
Sbjct: 358 ENVLVREDGHIMLSDFDLSLRCSVSPTLVKSSNNLQT-KSSGYCVQPSCIEPTCVMQPDC 416

Query: 305 ---SCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTH 361
              SCF+             +    + +   D H+Q +   PE++AEP NARS SFVGTH
Sbjct: 417 IKPSCFT------PRFLSGKSKKDKKSKPKNDMHNQ-VTPLPELIAEPTNARSMSFVGTH 469

Query: 362 EYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGV 421
           EYLAPE+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N  TL N++ +PL FP    
Sbjct: 470 EYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPT 529

Query: 422 SSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
            S          +DLI  LLVK P+ R+   +G+ EIK+H FF+ +NWALIR   PPEVP
Sbjct: 530 VS-------FAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCATPPEVP 582

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64682|PID_ARATH Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/510 (44%), Positives = 305/510 (59%), Gaps = 78/510 (15%)

Query: 8   NESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAA 67
            E    +++S I+    S S  S LSF +  S+I         +   + S KPH+++  A
Sbjct: 7   GEMSLGTTNSPISSGTESCSSFSRLSFDAPPSTIP--------EEESFLSLKPHRSSDFA 58

Query: 68  WEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL 127
           +  ++R R+ QG    D FRL+RR+G+GDIG VYLC++          ++AMKVVD+EAL
Sbjct: 59  YAEIRR-RKKQGLTFRD-FRLMRRIGAGDIGTVYLCRLAGDEEESRSSYFAMKVVDKEAL 116

Query: 128 AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
           A++KK+HRA+MEK IL MLDHPFLPTLYAEFEASH+SC+VMEYC GGDL++ R RQP +R
Sbjct: 117 ALKKKMHRAEMEKTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHRQPHRR 176

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
           F +SSA                            RFYAAE L+ALEYLHM+GI+YRDLKP
Sbjct: 177 FSLSSA----------------------------RFYAAEVLVALEYLHMLGIIYRDLKP 208

Query: 248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCF 307
           EN+LVR DGHIMLSDFDLS   D          S  A+E        S ++P    L   
Sbjct: 209 ENILVRSDGHIMLSDFDLSLCSD----------SIAAVES-------SSSSPENQQL--- 248

Query: 308 SSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPE 367
                  ++ ++   +  + ++V      Q L      VAEP+ ARS SFVGTHEY+APE
Sbjct: 249 -------RSPRRFTRLARLFQRVLRSKKVQTLEPTRLFVAEPVTARSGSFVGTHEYVAPE 301

Query: 368 VISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEF 427
           V SG  HG+AVDWW  GVFLYEM+YG TPF    N+  L NI+K+ L+FP    S +  F
Sbjct: 302 VASGGSHGNAVDWWAFGVFLYEMIYGKTPFVAPTNDVILRNIVKRQLSFP--TDSPATMF 359

Query: 428 EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYC 487
           E  +  ++LIS LL K+P KR+GS +G+ E+K H FFKG+N+ALIR++ PPE+P++    
Sbjct: 360 E--LHARNLISGLLNKDPTKRLGSRRGAAEVKVHPFFKGLNFALIRTLTPPEIPSS---- 413

Query: 488 KIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
            +KK +     S +  + P       FDYF
Sbjct: 414 VVKKPMKSATFSGRSSNKPAA-----FDYF 438

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts in association with PIN1 to control the establishment of bilateral symmetry and promotion of cotyledon outgrowth. Regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport. Required for polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response. The protein kinase activity of PID is essential for its auxin efflux regulatory function. PID kinase and PP2A phosphatase activities antagonistically regulate phosphorylation of PIN proteins, affecting PIN sorting.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05999|KPK7_ARATH Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/444 (47%), Positives = 266/444 (59%), Gaps = 78/444 (17%)

Query: 57  SHKPHKANQ-AAWEAMKRLR-RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQ 114
           ++KPH+ N    W A++ +R R    +    F+L+++LG GDIGNVYL ++    V    
Sbjct: 151 AYKPHRDNNDKRWVAIQEVRSRVGSSLEAKDFKLIKKLGGGDIGNVYLAELIGTGVS--- 207

Query: 115 CFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG 174
             +A+KV+++ A+A RKKL RA  EK IL  LDHPFLPTLY+ FE    SCLVME+CPGG
Sbjct: 208 --FAVKVMEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFCPGG 265

Query: 175 DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY 234
           DL++ RQ+Q GK F   +A                            RFY AE LLA+EY
Sbjct: 266 DLHSLRQKQRGKYFPEQAA----------------------------RFYVAEVLLAMEY 297

Query: 235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEK---- 290
           LHM+GI+YRDLKPENVLVREDGHIMLSDFDLS +C V P L+R    F AI    K    
Sbjct: 298 LHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVR----FAAITLESKSSSY 353

Query: 291 CSIPSCATP---------MQPVLSCFSS--VSHGKKNKKKAVTVTTIREQVDGDHHDQEL 339
           C  P+C            +QPV  CF+   +S GK  KK       IR            
Sbjct: 354 CIQPTCVDQSSCIVQPDCIQPV--CFTPRFLSKGKHRKKSNDMSRQIRPL---------- 401

Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
              PE++AEP +ARS SFVGTHEYLAPE+I G+GHGSAVDWWT G+FLYE+L+G TPF+G
Sbjct: 402 ---PELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGITPFRG 458

Query: 400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKGSVEI 458
            +N  TL N++ +PL FP        E   V    +DLI  LLVK P+ R+   +G+ EI
Sbjct: 459 GDNRATLFNVVGQPLRFP--------EHPNVSFAARDLIRGLLVKEPQHRLAYRRGATEI 510

Query: 459 KRHEFFKGINWALIRSIKPPEVPN 482
           K+H FF+ +NWALIR   PP++P 
Sbjct: 511 KQHPFFQSVNWALIRCTSPPQIPQ 534

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2QM77|PID_ORYSJ Protein kinase PINOID OS=Oryza sativa subsp. japonica GN=PID PE=2 SV=1

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/426 (46%), Positives = 255/426 (59%), Gaps = 65/426 (15%)

Query: 59  KPHKANQAAWEAMKRLRRAQGR-VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFY 117
           +PH++   AW A++         +G   F+L+RR+G GDIG VYLC++R+       C Y
Sbjct: 83  RPHRSGDVAWAAIRAASTTSAAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERESPCMY 142

Query: 118 AMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-HYSCLVMEYCPGGDL 176
           AMKVVDR A+A ++KL RA  EK IL  LDHPFLPTL+A+F+A+ H+SC VME+CPGGDL
Sbjct: 143 AMKVVDRRAVARKQKLGRAAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCPGGDL 202

Query: 177 YAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH 236
           ++ R R P +RF + SA                            RFYAAE LLA+EYLH
Sbjct: 203 HSLRHRMPSRRFPLPSA----------------------------RFYAAEVLLAIEYLH 234

Query: 237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSC 296
           MMGIVYRDLKPENVL+R DGHIML+DFDLS +    P L          +  ++ S  + 
Sbjct: 235 MMGIVYRDLKPENVLIRADGHIMLTDFDLSLQSTTSPSL------DGDTDTDDEASGGA- 287

Query: 297 ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKS 356
                   SCF    H  + K++   V   R               P  VAEP++ARS S
Sbjct: 288 --------SCFPD--HLLRFKRRRNAVAAPR---------------PRFVAEPVDARSCS 322

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           FVGTHEY+APEV SG  HG+AVDWW  GVFLYE++YG TPF G  NE TL NI+++PL F
Sbjct: 323 FVGTHEYVAPEVASGGAHGAAVDWWAYGVFLYELIYGRTPFAGATNEATLRNIVRRPLAF 382

Query: 417 PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIK 476
           P    S      +    +DLI++LL K+P  R+GS +G+ ++K H FFK +N AL+RS +
Sbjct: 383 PSGSGSCGPADADA---RDLIARLLAKDPAARLGSRRGAADVKSHPFFKSLNLALLRSSR 439

Query: 477 PPEVPN 482
           PP VP 
Sbjct: 440 PPVVPG 445

Serine/threonine-protein kinase involved in the regulation of auxin signaling. May control polar auxin transport and probably plays a role in the pattern formation and organogenesis in the rice shoot.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2

 Score =  319 bits (818), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/420 (41%), Positives = 241/420 (57%), Gaps = 93/420 (22%)

Query: 60  PHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAM 119
           PH     +W+A+K+++ +   VGL HF+ ++ LGSGD G+V+L +++          YAM
Sbjct: 551 PHNKESTSWKAIKKIQASGETVGLHHFKPIKPLGSGDTGSVHLVELKGTGE-----LYAM 605

Query: 120 KVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA 179
           K +++  +  R K HRA +E+ I+++LDHPFLPTLYA F+ S + CL+ ++CPGG+L+A 
Sbjct: 606 KAMEKTMMLNRNKAHRACIEREIISLLDHPFLPTLYASFQTSTHVCLITDFCPGGELFAL 665

Query: 180 RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG 239
             RQP K     SA                            RFYAAE ++ LEYLH +G
Sbjct: 666 LDRQPMKILTEDSA----------------------------RFYAAEVVIGLEYLHCLG 697

Query: 240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATP 299
           IVYRDLKPEN+L+++DGHI+L+DFDLSF     P+L+ P                  A P
Sbjct: 698 IVYRDLKPENILLKKDGHIVLADFDLSFMTTCTPQLIIP------------------AAP 739

Query: 300 MQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVG 359
                      S  +++K + +                     P  VAEP + +S SFVG
Sbjct: 740 -----------SKRRRSKSQPL---------------------PTFVAEP-STQSNSFVG 766

Query: 360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP-R 418
           T EY+APE+I+G GH SA+DWW LG+ LYEMLYG TPF+G+N +KT  NIL K LTFP  
Sbjct: 767 TEEYIAPEIITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSS 826

Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPP 478
           I VS       +V  Q LI+ LL ++P  R+GS  G+ EIK+H FF+GINW LIR + PP
Sbjct: 827 IPVS-------LVGRQ-LINTLLNRDPSSRLGSKGGANEIKQHAFFRGINWPLIRGMSPP 878

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for photo-induced movements. Mediates calcium spiking of extra- and intracellular origins in response to blue light. Involved in hypocotyl phototropism. Contributes to the chloroplast accumulation in low blue light and mediates their translocation (avoidance response) at high fluence. Regulates stomata opening and photomorphogenesis response of leaf tissue. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
225445430	470	PREDICTED: protein kinase PINOID 2-like	0.876	0.963	0.761	0.0
356563039	490	PREDICTED: protein kinase PINOID 2-like	0.912	0.963	0.708	0.0
356511648	481	PREDICTED: protein kinase PINOID 2-like	0.901	0.968	0.718	0.0
255566941	504	serine/threonine protein kinase, putativ	0.889	0.912	0.740	0.0
156481452	487	putative serine/threonine protein kinase	0.911	0.967	0.747	0.0
224136105	458	predicted protein [Populus trichocarpa]	0.874	0.986	0.737	0.0
357477953	490	Protein kinase G11A [Medicago truncatula	0.912	0.963	0.721	0.0
449443103	499	PREDICTED: protein kinase PINOID 2-like	0.887	0.919	0.664	0.0
356508315	497	PREDICTED: protein kinase PINOID 2-like	0.903	0.939	0.619	1e-175
297822235	525	kinase family protein [Arabidopsis lyrat	0.907	0.893	0.598	1e-172

>gi|225445430|ref|XP_002285044.1| PREDICTED: protein kinase PINOID 2-like [Vitis vinifera]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/499 (76%), Positives = 407/499 (81%), Gaps = 46/499 (9%)

Query: 19  ITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQ 78
           ITVPDSSRS+MSNLSFGSR S     S+          SHKPHKANQAAWEAMKRLR  +
Sbjct: 18  ITVPDSSRSWMSNLSFGSRSSVSVCSSAD--------TSHKPHKANQAAWEAMKRLRGEK 69

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM 138
           GRVGLDHFR+LRRLGSGDIGNVYLCQIRNP+VGLPQ FYAMKVVDREALAIR KL RA+M
Sbjct: 70  GRVGLDHFRMLRRLGSGDIGNVYLCQIRNPVVGLPQSFYAMKVVDREALAIRNKLQRAEM 129

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
           EK IL +LDHPFLPTLYAEF+ASHYSCLVME+CPGGDL+AARQRQPGKRF ISSAK    
Sbjct: 130 EKEILGILDHPFLPTLYAEFDASHYSCLVMEFCPGGDLHAARQRQPGKRFSISSAK---- 185

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                   FYAAETL+ALEYLHMMG+VYRDLKPENVLVREDGHI
Sbjct: 186 ------------------------FYAAETLVALEYLHMMGVVYRDLKPENVLVREDGHI 221

Query: 259 MLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK 318
           MLSDFDLS KCDVVPKLLRPK   EA  K  K S PSCATPMQPVLSCFS+      NKK
Sbjct: 222 MLSDFDLSLKCDVVPKLLRPKPDQEATGKKVKSSTPSCATPMQPVLSCFSA-----SNKK 276

Query: 319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAV 378
           K  +V TI      D   QE+  DPE+VAEPINARSKSFVGTHEYLAPEVISGQGHGSAV
Sbjct: 277 KKGSVRTIVASQADD--VQEI--DPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAV 332

Query: 379 DWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLIS 438
           DWWTLGVFLYE+LYG TPFKGENNEKTLINILK+PLTFPRIGVSSSKEFEE+VK+QDLIS
Sbjct: 333 DWWTLGVFLYELLYGRTPFKGENNEKTLINILKQPLTFPRIGVSSSKEFEEMVKVQDLIS 392

Query: 439 KLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKL 498
           KLLVKNPKKRIGSLKGSVEIKRHEFFKG+NWALIRS+KPPEVP + L   I+ +  +PKL
Sbjct: 393 KLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVKPPEVPRDHLQKIIRSRASLPKL 452

Query: 499 SKQERDAPYQIPTHHFDYF 517
           SK+ERDAPYQIP HHFDYF
Sbjct: 453 SKKERDAPYQIP-HHFDYF 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563039|ref|XP_003549773.1| PREDICTED: protein kinase PINOID 2-like [Glycine max]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/514 (70%), Positives = 410/514 (79%), Gaps = 42/514 (8%)

Query: 4   ATATNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKA 63
            T  +E DYDSSSSSITVP+SSRS+M+NLSFGSRR   S+   S+  ++      KPHKA
Sbjct: 19  TTTRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSVCSSTAESP---HAKPHKA 75

Query: 64  NQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD 123
           N AAWEAM+RLRR +G+VGLDHFRLLRRLGSGDIGNVYLCQIRNP+VGLPQCFYAMKVVD
Sbjct: 76  NHAAWEAMRRLRRDKGQVGLDHFRLLRRLGSGDIGNVYLCQIRNPIVGLPQCFYAMKVVD 135

Query: 124 REALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQ 183
           REALAIRKKL RA+MEK IL MLDHPFLPTLY EF+ASHYSCL+ME+CPGGDLYAARQRQ
Sbjct: 136 REALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLLMEFCPGGDLYAARQRQ 195

Query: 184 PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR 243
           PGKRF I+S+K                            FYAAETLLALEYLHMMGIVYR
Sbjct: 196 PGKRFSIASSK----------------------------FYAAETLLALEYLHMMGIVYR 227

Query: 244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPV 303
           DLKPENVLVREDGHIML+DFDLS KCDVVPKLLR K   E   K  K S+P+C  PMQPV
Sbjct: 228 DLKPENVLVREDGHIMLTDFDLSLKCDVVPKLLRSKTRLERSIKSTKRSMPACTAPMQPV 287

Query: 304 LSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEY 363
           LSCF S S   + KKKA   T IRE V+ +       +DPE+VAEPI+A+SKSFVGTHEY
Sbjct: 288 LSCFLSSS---RKKKKATVTTVIRENVEVEE------NDPELVAEPIDAKSKSFVGTHEY 338

Query: 364 LAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSS 423
           LAPEVI GQGHGSAVDWWT GVFLYEMLYG TPFKGENNEKTL+NILK+PL FPRI V +
Sbjct: 339 LAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIVVGT 398

Query: 424 SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNN 483
           SKEFEE+V +QDLISKLLVKNP KRIGSL GSVEIKRHEFFKG+NWALIR+++PPEVP+ 
Sbjct: 399 SKEFEEMVNVQDLISKLLVKNPSKRIGSLMGSVEIKRHEFFKGVNWALIRAVRPPEVPSE 458

Query: 484 DLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
               K++ +V +PKLSK +RD PYQ+ +HHF+YF
Sbjct: 459 --MNKLRSRVLLPKLSKTDRDQPYQLRSHHFEYF 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511648|ref|XP_003524535.1| PREDICTED: protein kinase PINOID 2-like [Glycine max]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/511 (71%), Positives = 411/511 (80%), Gaps = 45/511 (8%)

Query: 8   NESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSH-KPHKANQA 66
           +E DYDSSSSSITVP+SSRS+M+NLSFGSRR      SS +   +++ + H KPHKANQA
Sbjct: 15  DEPDYDSSSSSITVPESSRSWMTNLSFGSRRRR----SSVSVSSSTMESPHAKPHKANQA 70

Query: 67  AWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA 126
           AWEAM+RL R +G+VGLDHFRLLRRLGSGD+GNVYLCQIRNP+VGLPQCFYAMKVVDREA
Sbjct: 71  AWEAMRRLWRDKGQVGLDHFRLLRRLGSGDLGNVYLCQIRNPVVGLPQCFYAMKVVDREA 130

Query: 127 LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGK 186
           LAIRKKL RA+MEK IL MLDHPFLPTLY EF+ASHYSCLVME+CPGGDLYAARQRQPGK
Sbjct: 131 LAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGK 190

Query: 187 RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK 246
           RF I+SAK                            FYAAETLLALEYLHMMGIVYRDLK
Sbjct: 191 RFSIASAK----------------------------FYAAETLLALEYLHMMGIVYRDLK 222

Query: 247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSC 306
           PENVLVREDGHIML+DFDLS KCDV+PKLLR K   E   K  K S+P+C  PMQPVLSC
Sbjct: 223 PENVLVREDGHIMLTDFDLSLKCDVIPKLLRSKTRLERSIKSTKRSVPACTAPMQPVLSC 282

Query: 307 FSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAP 366
           F S S     KKKA   T IRE V+ +       +DPE+VAEPI+A+SKSFVGTHEYLAP
Sbjct: 283 FLSSS----KKKKATVTTVIRENVEVEE------NDPELVAEPIDAKSKSFVGTHEYLAP 332

Query: 367 EVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKE 426
           EVI GQGHGSAVDWWT GVFLYEMLYG TPFKGENNEKTL+NILK+PL+FPRI VSSSKE
Sbjct: 333 EVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLSFPRIAVSSSKE 392

Query: 427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLY 486
           FEE+VK+QDLISKLLVKNP KRIGS  GSVEIKRHEFFKG+NWALIRS++PPEVP+    
Sbjct: 393 FEEMVKVQDLISKLLVKNPSKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPSE--I 450

Query: 487 CKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
            KI+ +V +PKLSK + D PYQ+ +HHF+YF
Sbjct: 451 NKIRSRVLLPKLSKTDSDQPYQLRSHHFEYF 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566941|ref|XP_002524453.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223536241|gb|EEF37893.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/525 (74%), Positives = 427/525 (81%), Gaps = 65/525 (12%)

Query: 19  ITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQ 78
           ITVPDSSRS+MSNLSFGSRRSS+S+ SS A  ++SLY+++KPHKANQAAWEA+KRL+ A 
Sbjct: 19  ITVPDSSRSWMSNLSFGSRRSSVSVTSSLA--ESSLYSTYKPHKANQAAWEAIKRLQIAN 76

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM 138
           GRVGLDHFRLLRRLGSGD+GNVYLCQIRNP+VGLPQCFYAMKVVD+EAL IR KL RA++
Sbjct: 77  GRVGLDHFRLLRRLGSGDLGNVYLCQIRNPVVGLPQCFYAMKVVDKEALVIRNKLQRAEV 136

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
           EK IL MLDHPFLPTLYAEFEASHYSCLVME+CPGGDLYAARQRQPG+RF ISSAK    
Sbjct: 137 EKEILGMLDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRQPGRRFSISSAK---- 192

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                   FYAAETLLALEYLHMMGI+YRDLKPENVLVREDGHI
Sbjct: 193 ------------------------FYAAETLLALEYLHMMGIIYRDLKPENVLVREDGHI 228

Query: 259 MLSDFDLSFKCDVVPKLLR----PKLSFEAIE-----KYEKCSI-PSCATPMQPVLSCFS 308
           MLSDFDL  KCDVVPK++R    P LS EAI+       E C I PSCATP+QPVLSCFS
Sbjct: 229 MLSDFDLCLKCDVVPKVIRSTKKPNLS-EAIDDDDHKNIETCFITPSCATPIQPVLSCFS 287

Query: 309 SVSHGKKNKKKAVTVTTIREQVD-----------GDHHDQELLDDPEVVAEPINARSKSF 357
           S       KKKA  VTTI E+VD             HH QELL DPE+VAEPINARSKSF
Sbjct: 288 S----SNKKKKATKVTTITERVDNNHGEHHNHHHHHHHHQELLVDPELVAEPINARSKSF 343

Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG TPFKGENNEKTLINILK+PL+FP
Sbjct: 344 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGRTPFKGENNEKTLINILKQPLSFP 403

Query: 418 RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKP 477
           RI VSSSKE+EE+VK+QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG+NWALIRS++P
Sbjct: 404 RIIVSSSKEYEEMVKVQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRP 463

Query: 478 PEVPNNDLYCKIKK-----KVYVPKLSKQERDAPYQIPTHHFDYF 517
           PEVPN+   CKI+      +  +PKLSK+ER+APYQI  HHFDYF
Sbjct: 464 PEVPND--ICKIRNISRNSRAQIPKLSKKEREAPYQI--HHFDYF 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156481452|gb|ABU68435.1| putative serine/threonine protein kinase [Populus tomentosa]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/511 (74%), Positives = 422/511 (82%), Gaps = 40/511 (7%)

Query: 11  DYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSH-KPHKANQAAWE 69
           DYDSSSSS TVPDSSRS+MSNLSFGSRRSSIS+ SS A   +    +  KPHKANQAAW+
Sbjct: 13  DYDSSSSSTTVPDSSRSWMSNLSFGSRRSSISISSSVADSASICSTARVKPHKANQAAWQ 72

Query: 70  AMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI 129
           A+KRL+RA GRVGLDHFRLLRRLGSGDIGNVYLCQIRNP+VGLPQCFYAMKVVD+EALAI
Sbjct: 73  AIKRLQRATGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDKEALAI 132

Query: 130 RKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFG 189
           R KL RA+MEK IL MLDHPFLPTLYAEFEASHYSCLV EYCPGGDLYAARQRQP KRF 
Sbjct: 133 RNKLQRAEMEKEILGMLDHPFLPTLYAEFEASHYSCLVTEYCPGGDLYAARQRQPWKRFS 192

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           ISSAK                            FYAAETLLALEYLHMMGIVYRDLKPEN
Sbjct: 193 ISSAK----------------------------FYAAETLLALEYLHMMGIVYRDLKPEN 224

Query: 250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSI---PSCATPMQPVLSC 306
           VLVREDGHIMLSDFDLSFKCDVVPKLLR K S EAI +++  +    P CATP+ PVLSC
Sbjct: 225 VLVREDGHIMLSDFDLSFKCDVVPKLLRSKPSLEAIVRHKNETTSFAPFCATPIHPVLSC 284

Query: 307 FSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAP 366
           FSS       K+K    TTIRE+VD   +D++++D  E+VAEPI+ARSKSFVGTHEYLAP
Sbjct: 285 FSS----SNKKRKPRITTTIRERVDDQGYDEDVVDT-ELVAEPISARSKSFVGTHEYLAP 339

Query: 367 EVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKE 426
           EVISGQGHGSAVDWWTLGVFLYEMLYG TPFKGENNEKTLINILK+PLTFPRIGV+SSKE
Sbjct: 340 EVISGQGHGSAVDWWTLGVFLYEMLYGRTPFKGENNEKTLINILKQPLTFPRIGVNSSKE 399

Query: 427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLY 486
           FEE+VKLQDL+ KLLVKNPK+RIGSLKGSVEIKRHEFFKG+NWALIRSIKPPE P++   
Sbjct: 400 FEEMVKLQDLVGKLLVKNPKRRIGSLKGSVEIKRHEFFKGVNWALIRSIKPPESPSD--L 457

Query: 487 CKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
           C+ + + ++P LSK+ER  PYQIP+ HF+YF
Sbjct: 458 CRFRSRAHIPMLSKKERQEPYQIPS-HFEYF 487

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136105|ref|XP_002322241.1| predicted protein [Populus trichocarpa] gi|222869237|gb|EEF06368.1| predicted protein [Populus trichocarpa]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/495 (73%), Positives = 403/495 (81%), Gaps = 43/495 (8%)

Query: 29  MSNLSFGSRRSSISLCSSSAADQTSLYNSH-KPHKANQAAWEAMKRLRRAQGRVGLDHFR 87
           MSNLSFGSRRSSIS+ SS A   +    +  KPHKANQAAW+A+KRL+RA GRVGLDHFR
Sbjct: 1   MSNLSFGSRRSSISISSSVADSASICSTARMKPHKANQAAWQAIKRLQRATGRVGLDHFR 60

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
           LLRRLGSGDIGNVYLCQIRNP+VGLPQCFYAMKVVD+EALAIR KL RA+MEK IL MLD
Sbjct: 61  LLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDKEALAIRNKLQRAEMEKEILGMLD 120

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           HPFLPTLYAEFEASHYSCLV EYCPGGDLYAARQRQP KRF ISSAK             
Sbjct: 121 HPFLPTLYAEFEASHYSCLVTEYCPGGDLYAARQRQPWKRFSISSAK------------- 167

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSF 267
                          FYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSF
Sbjct: 168 ---------------FYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSF 212

Query: 268 KCDVVPKLLRPKLSFEAIEKYEK-----CSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT 322
           KCDVVPKLLR K S EAI +++        +  CATP+ PVLSCFSS       K+K   
Sbjct: 213 KCDVVPKLLRSKPSLEAIVRHKNETTSFAPLTFCATPIHPVLSCFSS----SNKKRKPRI 268

Query: 323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT 382
            TTI EQ+DG  +D+E+  + E+VAEPI+ARSKSFVGTHEYLAPEVISGQGHGSAVDWWT
Sbjct: 269 TTTITEQIDGQGYDEEV--ETELVAEPISARSKSFVGTHEYLAPEVISGQGHGSAVDWWT 326

Query: 383 LGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLV 442
           LGVFLYEMLYG TPFKGENNEKTLINILK+PLTFPRIGV+SSKEFEE+VKLQDL+ KLLV
Sbjct: 327 LGVFLYEMLYGRTPFKGENNEKTLINILKQPLTFPRIGVNSSKEFEEMVKLQDLVGKLLV 386

Query: 443 KNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQE 502
           KNPK+RIGSLKGSVEIKRHEFFKG+NWALIRSIKPPE P++   C+ + + ++P LSK+E
Sbjct: 387 KNPKRRIGSLKGSVEIKRHEFFKGVNWALIRSIKPPESPSD--LCRFRSRAHIPMLSKKE 444

Query: 503 RDAPYQIPTHHFDYF 517
           R  PYQIP+ HF+YF
Sbjct: 445 RQEPYQIPS-HFEYF 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477953|ref|XP_003609262.1| Protein kinase G11A [Medicago truncatula] gi|355510317|gb|AES91459.1| Protein kinase G11A [Medicago truncatula]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/514 (72%), Positives = 406/514 (78%), Gaps = 42/514 (8%)

Query: 9   ESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTS--LYNSHKPHKANQA 66
           E DYDSSSSSITVP+S+RS+MSNLSFGSRR   S+  SS    TS  L ++ KPHKANQ 
Sbjct: 14  EPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSVLGSNAKPHKANQV 73

Query: 67  AWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA 126
           AWEAM RLR  QGRVGLDHFRLL+RLGSGDIGNVYLCQIRNP+VGLPQCFYAMKVVDREA
Sbjct: 74  AWEAMSRLRLDQGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREA 133

Query: 127 LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGK 186
           LAIRKKL RA+MEK IL MLDHPFLPTLY +F+ASHYSCLVME+CPGGDLYA RQRQPGK
Sbjct: 134 LAIRKKLQRAEMEKEILGMLDHPFLPTLYTDFDASHYSCLVMEFCPGGDLYACRQRQPGK 193

Query: 187 RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK 246
           RF +SS+K                            FYAAETLLALEYLHMMGIVYRDLK
Sbjct: 194 RFSLSSSK----------------------------FYAAETLLALEYLHMMGIVYRDLK 225

Query: 247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYE---KCSIPSCATPMQPV 303
           PENVLVREDGHIMLSDFDLS KCDVVPKLLR K   E   K     +CS PSC +PMQPV
Sbjct: 226 PENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKTTTTMRCSTPSCISPMQPV 285

Query: 304 LSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEY 363
           LSCF S S     KKK    T IRE V     + E+  DP+ VAEPI ARSKSFVGTHEY
Sbjct: 286 LSCFLSSS---TKKKKTKLETVIRENV---QEEFEVDLDPDFVAEPIEARSKSFVGTHEY 339

Query: 364 LAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSS 423
           LAPEVI GQGHGSAVDWWT GVFLYEMLYG TPFKGENNEKTL+NILK+PLTFPRIGVSS
Sbjct: 340 LAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSS 399

Query: 424 SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNN 483
           + EFEE+VK+QDLISKLLVKNP KRIGS  GSVEIKRHEFFKG+NWALIRS++PPEVP++
Sbjct: 400 NYEFEEMVKVQDLISKLLVKNPSKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSD 459

Query: 484 DLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
               K + +V VPKLSK++RD P+Q+  H FDYF
Sbjct: 460 K--NKTRNRVLVPKLSKKDRDQPFQL-KHQFDYF 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443103|ref|XP_004139320.1| PREDICTED: protein kinase PINOID 2-like [Cucumis sativus] gi|449526910|ref|XP_004170456.1| PREDICTED: protein kinase PINOID 2-like [Cucumis sativus]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/519 (66%), Positives = 390/519 (75%), Gaps = 60/519 (11%)

Query: 19  ITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSH------KPHKANQAAWEAMK 72
           ITVPDS+RS+MSNLSFGSRR S    SSSAAD   L N        KPHKAN+  WEAM+
Sbjct: 21  ITVPDSTRSWMSNLSFGSRRRS----SSSAADGGGLENITSGTMMVKPHKANEVGWEAMR 76

Query: 73  RLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK 132
            LRRA+G VGL+ FRL+RR+GSGDIGNVYLC+IRNPMVGLP+ FYAMKVVDREA+ +R K
Sbjct: 77  WLRRAKGEVGLEDFRLIRRVGSGDIGNVYLCEIRNPMVGLPKWFYAMKVVDREAVCVRNK 136

Query: 133 LHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
             RADMEK IL +LDHPFLPTLYA FEASHYSCLVME+CPGGDLYAAR R P KRF I S
Sbjct: 137 ERRADMEKEILKLLDHPFLPTLYAHFEASHYSCLVMEFCPGGDLYAARLRLPNKRFSIPS 196

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
           AK                            FYAAE +LALEYLHMMGI+YRDLKPENVLV
Sbjct: 197 AK----------------------------FYAAEIILALEYLHMMGIIYRDLKPENVLV 228

Query: 253 REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS--------CATPMQPVL 304
           REDGHIMLSDFDL  KCDVVPKLLR + +  A +++ + S  S         A P+QPVL
Sbjct: 229 REDGHIMLSDFDLCLKCDVVPKLLRSRTT--ASDRHVRSSSYSFSTSSSSCAAAPIQPVL 286

Query: 305 SCFSSVSHGKKNKKKAVTVTTIREQV-DGDHHDQELLDDPEVVAEPINARSKSFVGTHEY 363
           SCFS        ++K+ TVTTI E   D  +  +E   +PE++AEPINARSKSFVGTHEY
Sbjct: 287 SCFSL-----SRRQKSTTVTTITEHASDSIYSGEEFDPEPELIAEPINARSKSFVGTHEY 341

Query: 364 LAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSS 423
           LAPEVISGQGHGS VDWWTLG+FLYEMLYG TPFKGENNEKTL+NILK+PL FPRIG+SS
Sbjct: 342 LAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLKFPRIGISS 401

Query: 424 SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIK-----PP 478
           SKE+EE+VK++DLI KLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS++       
Sbjct: 402 SKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSVRPPQIPNN 461

Query: 479 EVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
            + NN  Y K     Y+PKLSK++R  PYQIP HHFDYF
Sbjct: 462 NIINNLNYSKHPSN-YLPKLSKKQRQQPYQIPNHHFDYF 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508315|ref|XP_003522903.1| PREDICTED: protein kinase PINOID 2-like [Glycine max]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 339/547 (61%), Positives = 386/547 (70%), Gaps = 80/547 (14%)

Query: 1   MVAATATNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSS----ISLCSSSAADQTSLYN 56
           M + T    SD DS+ SSIT+ DS+RS++S  SF    SS    + LC+++         
Sbjct: 1   MASTTRDESSDNDSTCSSITLADSTRSWLSTFSFRRSSSSNSSSLPLCAAA--------- 51

Query: 57  SHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQC- 115
              P     A+WEAM+RLR   G +GLD+FRLLRRLGSGDIGNVYLCQI+N MVG PQ  
Sbjct: 52  ---PDTTKSASWEAMRRLRLDTGGIGLDNFRLLRRLGSGDIGNVYLCQIQNSMVGRPQSL 108

Query: 116 FYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGD 175
           +YAMKVVDREALA+RKKL RA+MEK IL M+DHPFLPTLYA F+ASHYSC VM++CPGGD
Sbjct: 109 YYAMKVVDREALAVRKKLQRAEMEKQILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGD 168

Query: 176 LYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL 235
           L++ARQRQPGKRF ISS K                            FYAAETL+ALEYL
Sbjct: 169 LFSARQRQPGKRFTISSTK----------------------------FYAAETLVALEYL 200

Query: 236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS 295
           HM GIVYRDLKPENVL+REDGHIMLSDFDL  KCDVVPKLLR K S E+  K  + S PS
Sbjct: 201 HMKGIVYRDLKPENVLIREDGHIMLSDFDLCLKCDVVPKLLRSKTSSESSVKTRRSSAPS 260

Query: 296 C-ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDG---------------------D 333
           C A PM    SCFS+ S     +KK VT   IRE +D                      D
Sbjct: 261 CVAAPMH---SCFSASS----KRKKVVTTAIIRENMDATNKKVLLFKVKKFLSKFVLGHD 313

Query: 334 HHDQELLD-DPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
           +    L + D E+VAEPINARSKSFVGTHEYLAPEVISG GHGSAVDWWT GVFLYEMLY
Sbjct: 314 YCTSGLGEHDTEIVAEPINARSKSFVGTHEYLAPEVISGNGHGSAVDWWTFGVFLYEMLY 373

Query: 393 GTTPFKGENNEKTLINILKKPLTFPR--IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           G TPFKGENNEKTL+NILK+PL FPR     SSSKEFEE+VK+QDLISKLLVKNPKKRIG
Sbjct: 374 GRTPFKGENNEKTLMNILKQPLAFPRVSSVSSSSKEFEEMVKVQDLISKLLVKNPKKRIG 433

Query: 451 SLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIP 510
              GSVEIKRHEFFKG+NWALIRS++PPEVP      KI+ +V + KLSK+++D PYQI 
Sbjct: 434 CCMGSVEIKRHEFFKGVNWALIRSVRPPEVPAE--LNKIRSRVSLQKLSKKDKDQPYQI- 490

Query: 511 THHFDYF 517
           THHFDYF
Sbjct: 491 THHFDYF 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822235|ref|XP_002879000.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324839|gb|EFH55259.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 333/556 (59%), Positives = 382/556 (68%), Gaps = 87/556 (15%)

Query: 8   NESDYDSSSSSITVPDSSRS---FMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKAN 64
           NESDY+SS++    PDSSR      S+ +     SSIS  S++  +    YN  KPHKAN
Sbjct: 11  NESDYESSTAG---PDSSRRTSWLSSSFTASPSCSSISHLSNNGLNN---YNQSKPHKAN 64

Query: 65  QAAWEAMKRLRRAQGR-VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQ-CFYAMKVV 122
           Q AWEAM RLRR  GR VGL+HFRLL+RLGSGDIG+VYLCQIR    G P+  FYAMKVV
Sbjct: 65  QVAWEAMARLRRCCGRAVGLEHFRLLKRLGSGDIGSVYLCQIR----GSPETAFYAMKVV 120

Query: 123 DREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQR 182
           D+EA+A++KKL RA+MEK IL MLDHPF PTLYA FEASHYS LVMEYCPGGDLYAAR R
Sbjct: 121 DKEAVAVKKKLGRAEMEKKILGMLDHPFCPTLYAAFEASHYSFLVMEYCPGGDLYAARLR 180

Query: 183 QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY 242
           QP KRF ISS                             RFYAAETL+ALEYLHMMGIVY
Sbjct: 181 QPSKRFTISST----------------------------RFYAAETLVALEYLHMMGIVY 212

Query: 243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRP-------KLSFEAIEKYEKCSIPS 295
           RDLKPENVL+REDGH+MLSDFDLSFKCDVVP+LL         +   E I    KCS PS
Sbjct: 213 RDLKPENVLIREDGHVMLSDFDLSFKCDVVPQLLNDNDRDRGHQGDDEDISIRRKCSTPS 272

Query: 296 C-ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLD------------- 341
           C ATP+ PV+SCFS  S   + +KK V  TTI E   G  H  +  D             
Sbjct: 273 CTATPLNPVISCFSPTS--SRRRKKNVVTTTIHENAAGTSHTVKSNDVSRTFSRSPSSCS 330

Query: 342 ------------DPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE 389
                        P + AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT G+FLYE
Sbjct: 331 RVSNGLRDISGGCPSIFAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGIFLYE 390

Query: 390 MLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           M++G TPFKGENNEKTL+NILK PLTFP++ V+S KE+E++V  QDLI KLLVKNPKKR+
Sbjct: 391 MIFGRTPFKGENNEKTLVNILKAPLTFPKVIVNSPKEYEDMVNAQDLIIKLLVKNPKKRL 450

Query: 450 GSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKK-----KVYVPK---LSKQ 501
           GSLKGS+EIKRHEFF+G+NWALIRSIKPP VP  +   K K        Y+P    +S++
Sbjct: 451 GSLKGSIEIKRHEFFEGVNWALIRSIKPPWVPKEETSHKTKGDNRSVNYYLPPRFMMSRK 510

Query: 502 ERDAPYQIPTHHFDYF 517
           ERD PY +  +HFDYF
Sbjct: 511 ERDEPYHV-ANHFDYF 525

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2043813	525	PID2 "PINOID2" [Arabidopsis th	0.336	0.331	0.688	9e-147
TAIR|locus:2133837	506	D6PKL1 "D6 protein kinase like	0.450	0.460	0.489	2e-102
TAIR|locus:2160922	586	D6PKL2 "D6 protein kinase like	0.452	0.399	0.506	8.4e-102
TAIR|locus:2178388	498	D6PK "D6 protein kinase" [Arab	0.454	0.471	0.489	3.6e-101
UNIPROTKB|Q5I6E9	700	Adi3 "AvrPto-dependent Pto-int	0.477	0.352	0.476	2.3e-99
TAIR|locus:2062268	438	PID "PINOID" [Arabidopsis thal	0.263	0.310	0.594	1.6e-97
TAIR|locus:2055017	765	AT2G44830 [Arabidopsis thalian	0.473	0.320	0.488	2.9e-97
TAIR|locus:2032785	499	RSH3 "root hair specific 3" [A	0.297	0.308	0.515	1.3e-95
TAIR|locus:2085191	934	KIPK "KCBP-interacting protein	0.479	0.265	0.507	2e-95
TAIR|locus:2207470	555	AGC1.7 "AGC kinase 1.7" [Arabi	0.274	0.255	0.566	1.8e-94

TAIR|locus:2043813 PID2 "PINOID2" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 9.0e-147, Sum P(3) = 9.0e-147
 Identities = 126/183 (68%), Positives = 153/183 (83%)

Query:   343 PEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
             P + AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT G+FLYEM++G TPFKG+NN
Sbjct:   344 PSIFAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGIFLYEMIFGRTPFKGDNN 403

Query:   403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
             EKTL+NILK PLTFP++ V+S KE+E++V  QDLI KLLVKNPKKR+GSLKGS+EIKRHE
Sbjct:   404 EKTLVNILKAPLTFPKVIVNSPKEYEDMVNAQDLIIKLLVKNPKKRLGSLKGSIEIKRHE 463

Query:   463 FFKGINWALIRSIKPPEVPNNDLYCKIK---KKV--YVPK---LSKQERDAPYQIPTHHF 514
             FF+G+NWALIRSIKPP VP  +   K K   + V  Y+P    +S++ER+ PY + +++F
Sbjct:   464 FFEGVNWALIRSIKPPWVPKEETSHKTKGDNRSVNYYLPPRFMMSRKERNEPYHV-SNYF 522

Query:   515 DYF 517
             DYF
Sbjct:   523 DYF 525

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048825 "cotyledon development" evidence=IGI

TAIR|locus:2133837 D6PKL1 "D6 protein kinase like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 121/247 (48%), Positives = 163/247 (65%)

Query:   236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPK-LSFEAIEKYEKCSIP 294
             HM+GI+YRDLKPENVLVR+DGH+MLSDFDLS +C V P ++R   L+ E  +    C+ P
Sbjct:   240 HMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTVSPTVVRSTVLASEGQKNSGYCAQP 299

Query:   295 SCATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARS 354
             +C    QP  SC S+ +          +  + +++   +    ++   PE+VAEP +ARS
Sbjct:   300 ACI--QQP--SCISAPT--TCFSPRYFSSKSKKDKKMKNETGNQVSPLPELVAEPTSARS 353

Query:   355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
              SFVGTHEYLAPE+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N  TL N++ +PL
Sbjct:   354 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPL 413

Query:   415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS 474
              FP   V S          +DLI  LLVK P+ R+   +G+ E+K+H FF+G+NWAL+R 
Sbjct:   414 RFPESPVVS-------FAARDLIRSLLVKEPQHRLAYKRGATEMKQHPFFEGVNWALVRC 466

Query:   475 IKPPEVP 481
               PPE+P
Sbjct:   467 ASPPEIP 473

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2160922 D6PKL2 "D6 protein kinase like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 126/249 (50%), Positives = 165/249 (66%)

Query:   236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPK-LSFEAIEKYEKCSIP 294
             HM+GIVYRDLKPENVLVREDGHIMLSDFDLS +C V P L++   +  + + K   C  P
Sbjct:   308 HMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCLVSPTLVKSAAIESDPLRKNVYCVQP 367

Query:   295 SCATP--MQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDHHDQELLDDPEVVAEPINA 352
             +C  P  +QP  SC    +        + +    + + D  +  + L   PE+VAEP +A
Sbjct:   368 ACIEPSCIQP--SCTVPTTCFSPRLFSSKSKKDRKPKNDTANQVRPL---PELVAEPTDA 422

Query:   353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             RS SFVGTHEYLAPE+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N +TL N++ +
Sbjct:   423 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRQTLFNVVGQ 482

Query:   413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
             PL FP   V S          +DLI  LL+K P++R+G  +G+ E+K+H FF+G+NWALI
Sbjct:   483 PLRFPETPVVS-------FAARDLIRGLLMKEPQQRLGFKRGATEVKQHPFFEGVNWALI 535

Query:   473 RSIKPPEVP 481
             R   PPE+P
Sbjct:   536 RCATPPEIP 544

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2178388 D6PK "D6 protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
 Identities = 122/249 (48%), Positives = 160/249 (64%)

Query:   236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRP-KLSFEAIEKYE-KCSI 293
             HM+GI+YRDLKPENVLVR+DGH+MLSDFDLS +C V   ++R   +  E + K    CS 
Sbjct:   226 HMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCTVSLSIVRSANVGSEGLSKNSVSCSQ 285

Query:   294 -PSCATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDHHDQELLDDPEVVAEPINA 352
              P+C    QP  SC S             + +   ++   ++ + ++   PE+VAEP  A
Sbjct:   286 QPACI--QQP--SCISMAPTSCFGPRFFSSKSKKDKKPKTENGNHQVTPLPELVAEPTGA 341

Query:   353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             RS SFVGTHEYLAPE+I G+GHGSAVDWWT G+FLYE+L+G TPFKG  N  TL N++ +
Sbjct:   342 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQ 401

Query:   413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
             PL FP   V S          +DLI  LLVK P+ R+   +G+ EIK+H FF+G+NWAL+
Sbjct:   402 PLRFPESPVVS-------FAARDLIRSLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALV 454

Query:   473 RSIKPPEVP 481
             R   PPE+P
Sbjct:   455 RCASPPEIP 463

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0010540 "basipetal auxin transport" evidence=IGI

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q5I6E9 Adi3 "AvrPto-dependent Pto-interacting protein 3" [Solanum lycopersicum (taxid:4081)]

 Score = 598 (215.6 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 124/260 (47%), Positives = 155/260 (59%)

Query:   222 RFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLS 281
             RF            HM+G+VYRDLKPENVLVR+DGHIMLSDFDLS +C V P L+R    
Sbjct:   411 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRISSD 470

Query:   282 FEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDHHDQELLD 341
               +      C  P+C   ++P   C                  T + + D       +  
Sbjct:   471 DPSKRGAAFCVQPAC---IEPTTVCMQPACFLPRLFPQKSKKKTPKPRADSGFQANSM-- 525

Query:   342 DPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN 401
              PE+VAEP +ARS SFVGTHEYLAPE+I G+GHGSAVDWWT G+FL+E+LYG TPFKG  
Sbjct:   526 -PELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG 584

Query:   402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
             N  TL N++ + L FP    +S          +DLI  LLVK P+ R+G  +G+ EIK+H
Sbjct:   585 NRATLFNVVGQQLKFPDSPATSYAS-------RDLIRGLLVKEPQNRLGVKRGATEIKQH 637

Query:   462 EFFKGINWALIRSIKPPEVP 481
              FF+G+NWALIR   PPEVP
Sbjct:   638 PFFEGVNWALIRCSTPPEVP 657

GO:0005515 "protein binding" evidence=IPI

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

TAIR|locus:2062268 PID "PINOID" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 1.6e-97, Sum P(3) = 1.6e-97
 Identities = 82/138 (59%), Positives = 108/138 (78%)

Query:    57 SHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF 116
             S KPH+++  A+  ++R R+ QG    D FRL+RR+G+GDIG VYLC++          +
Sbjct:    48 SLKPHRSSDFAYAEIRR-RKKQGLTFRD-FRLMRRIGAGDIGTVYLCRLAGDEEESRSSY 105

Query:   117 YAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL 176
             +AMKVVD+EALA++KK+HRA+MEK IL MLDHPFLPTLYAEFEASH+SC+VMEYC GGDL
Sbjct:   106 FAMKVVDKEALALKKKMHRAEMEKTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDL 165

Query:   177 YAARQRQPGKRFGISSAK 194
             ++ R RQP +RF +SSA+
Sbjct:   166 HSLRHRQPHRRFSLSSAR 183

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0048825 "cotyledon development" evidence=IGI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0048827 "phyllome development" evidence=IGI

GO:0009958 "positive gravitropism" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055017 AT2G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 129/264 (48%), Positives = 160/264 (60%)

Query:   222 RFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLS 281
             RF            HM+G+VYRDLKPENVLVR+DGHIMLSDFDLS +C V P L++    
Sbjct:   466 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT-FD 524

Query:   282 FEAIEKYEKCSIPSCATPMQPVL---SCFSSVSHGXXXXXXAVTVTTIREQVDG-DHHDQ 337
              +   +   C  P+C  P    +   SCF   S          +  T   Q D    H  
Sbjct:   525 SDPSRRGAFCVQPACMEPTSACIIQPSCFLPRSIFPNKNKKNKSRKT---QADFFKSHSG 581

Query:   338 ELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
              L   PE+VAEP N RS SFVGTHEYLAPE+I G+GHGSAVDWWT G+F++E+LYG TPF
Sbjct:   582 SL---PELVAEP-NTRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFVHELLYGKTPF 637

Query:   398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE 457
             KG  N  TL N++ + L FP    +S          +DLI  LLVK+PK R+G+ +G+ E
Sbjct:   638 KGSGNRATLFNVVGEQLKFPESPATSYAG-------RDLIQALLVKDPKNRLGTKRGATE 690

Query:   458 IKRHEFFKGINWALIRSIKPPEVP 481
             IK+H FF+G+NWALIR   PPEVP
Sbjct:   691 IKQHPFFEGVNWALIRCSTPPEVP 714

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2032785 RSH3 "root hair specific 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 1.3e-95, Sum P(3) = 1.3e-95
 Identities = 84/163 (51%), Positives = 112/163 (68%)

Query:   343 PEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
             PE++AEP N +S SFVGTHEYLAPE+I  +GHGSAVDWWT G+F+YE+L+G TPFKG+ N
Sbjct:   322 PELMAEPTNVKSMSFVGTHEYLAPEIIKNEGHGSAVDWWTFGIFIYELLHGATPFKGQGN 381

Query:   403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
             + TL N++ +PL FP     SS         +DLI  LLVK P+ RI   +G+ EIK+H 
Sbjct:   382 KATLYNVIGQPLRFPEYSQVSSTA-------KDLIKGLLVKEPQNRIAYKRGATEIKQHP 434

Query:   463 FFKGINWALIRSIKPPEVPNN-DLYCKIKK-KVYVPKLSKQER 503
             FF+G+NWALIR   PP +P   D  C +KK K  +P  + +++
Sbjct:   435 FFEGVNWALIRGETPPHLPEPVDFSCYVKKEKESLPPAATEKK 477

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085191 KIPK "KCBP-interacting protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 2.0e-95, Sum P(2) = 2.0e-95
 Identities = 140/276 (50%), Positives = 168/276 (60%)

Query:   222 RFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLR---- 277
             RF            HM+GI+YRDLKPEN+LVREDGHIML+DFDLS +C V P L+R    
Sbjct:   641 RFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLVRSNSP 700

Query:   278 PKLSFEAIE-KYE--KCSIPSCATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDH 334
             P      I   Y    C  P C T     +SCFS                  R+   GDH
Sbjct:   701 PGKDPARISGPYNTSNCIQPFCITEPSCQVSCFSPRLSSNQQQG--------RKPKRGDH 752

Query:   335 --HDQELLDD--PEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM 390
                 Q+ L    P++VAEP  ARS SFVGTHEYLAPE+I G+GHG+AVDWWT GV LYE+
Sbjct:   753 LSKTQQHLSRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVLLYEL 812

Query:   391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
             LYG TPFKG NN++TL N++ + L FP   + S   F+     +DLI  LLVK P+ R+G
Sbjct:   813 LYGKTPFKGYNNDETLANVVLQNLKFPDSPLVS---FQA----KDLIRGLLVKEPENRLG 865

Query:   451 SLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLY 486
             S KGSVEIKRH FF+G+NWALIR   PPE+P  D Y
Sbjct:   866 SEKGSVEIKRHPFFEGLNWALIRCAIPPELP--DFY 899

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2207470 AGC1.7 "AGC kinase 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 1.8e-94, Sum P(3) = 1.8e-94
 Identities = 85/150 (56%), Positives = 105/150 (70%)

Query:   343 PEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
             PE++AEP N +S SFVGTHEYLAPE+I G+GHGSAVDWWT G+F+YE+LYG TPFKG+ N
Sbjct:   366 PELMAEPTNVKSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFIYELLYGATPFKGQGN 425

Query:   403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
               TL N++ + L FP +   SS         +DLI  LLVK P+KRI   +G+ EIK+H 
Sbjct:   426 RATLHNVIGQALRFPEVPHVSSAA-------RDLIKGLLVKEPQKRIAYKRGATEIKQHP 478

Query:   463 FFKGINWALIRSIKPPEVPNN-DLYCKIKK 491
             FF+G+NWALIRS  PP VP   D  C   K
Sbjct:   479 FFEGVNWALIRSATPPHVPEPVDFSCYASK 508

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94E49	PID2_ORYSJ	2, ., 7, ., 1, 1, ., 1	0.5568	0.9245	0.9695	yes	no
Q64FQ2	PID2_ARATH	2, ., 7, ., 1, 1, ., 1	0.5845	0.9071	0.8933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-159
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-65
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-65
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	6e-49
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	3e-44
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	2e-42
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-42
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	8e-40
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-39
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-38
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-36
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-35
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	1e-34
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	8e-33
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	1e-32
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-32
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-32
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-32
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-30
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-30
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-30
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-30
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	5e-30
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	3e-29
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	3e-29
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	4e-29
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	7e-29
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-28
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-28
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-27
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-27
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-27
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-26
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-26
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-26
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	5e-26
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-25
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-25
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-25
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-25
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	9e-25
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-24
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-24
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-24
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	6e-24
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	7e-24
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	8e-24
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	8e-24
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	9e-24
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	1e-23
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-23
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-23
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	6e-23
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	6e-23
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-23
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	8e-23
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	9e-23
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-22
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-22
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-22
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-22
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-22
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	3e-22
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-21
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	1e-21
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-21
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-21
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	4e-21
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	5e-21
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	5e-21
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	6e-21
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	7e-21
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-20
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-20
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-20
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-20
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-20
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	6e-20
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	6e-20
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	6e-20
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	2e-19
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	3e-19
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	3e-19
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-19
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	4e-19
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	8e-19
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-18
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-18
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	2e-18
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-18
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	3e-18
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-18
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	4e-18
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-18
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	5e-18
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	7e-18
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	1e-17
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-17
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	2e-17
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-17
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-17
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	5e-17
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	6e-17
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-16
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-16
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-16
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-16
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-16
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	1e-16
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	2e-16
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-16
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-16
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	4e-16
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	5e-16
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	5e-16
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	7e-16
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	7e-16
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	8e-16
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	8e-16
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	8e-16
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-15
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-15
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	3e-15
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-15
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-15
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	7e-15
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	1e-14
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	5e-14
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-14
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	7e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-14
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	9e-14
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-13
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	1e-13
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	2e-13
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	4e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-13
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-12
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-12
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	4e-12
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-12
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	5e-12
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	6e-12
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-11
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-11
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	2e-11
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-11
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-11
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	6e-11
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	8e-11
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-10
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-10
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-10
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	4e-10
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	5e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-09
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-09
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-09
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-09
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-09
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-09
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-09
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-09
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	7e-09
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	8e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	8e-09
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	8e-09
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	9e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-08
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-08
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-08
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	2e-08
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-08
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-08
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	4e-08
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	5e-08
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	6e-08
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	7e-08
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	8e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	9e-08
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	9e-08
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	1e-07
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-07
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-07
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-07
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-07
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	2e-07
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	2e-07
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	3e-07
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	3e-07
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	4e-07
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	4e-07
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	4e-07
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	5e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	6e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-07
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	7e-07
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	8e-07
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	9e-07
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	9e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-06
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-06
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	1e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-06
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	2e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-06
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	3e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	5e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-06
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	5e-06
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	6e-06
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	7e-06
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	8e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-05
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-05
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	2e-05
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	2e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-05
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-05
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	3e-05
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-05
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	3e-05
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	3e-05
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	3e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	4e-05
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	4e-05
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	4e-05
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	4e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	4e-05
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	5e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	5e-05
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	5e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	5e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	5e-05
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	6e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	6e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	8e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	8e-05
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	8e-05
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	8e-05
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	9e-05
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	9e-05
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	9e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	9e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-04
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	1e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-04
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	1e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	1e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	3e-04
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	3e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	3e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	3e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-04
smart00750	176	smart00750, KIND, kinase non-catalytic C-lobe doma	3e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	4e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	4e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	4e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	4e-04
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	4e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	5e-04
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	5e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	5e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	5e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	5e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	6e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	6e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	6e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	6e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	6e-04
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	6e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	6e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	7e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	7e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	8e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	8e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	8e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	8e-04
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	8e-04
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.001
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.001
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.001
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	0.001
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.001
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.001
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	0.001
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.001
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.001
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.001
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.001
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	0.001
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.001
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	0.001
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.001
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.001
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.002
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.002
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.002
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.002
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	0.002
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.002
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.002
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.002
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.002
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.002
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	0.002
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	0.002
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.003
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.003
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.003
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.003
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.003
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.003
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.004
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.004
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.004

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score =  454 bits (1170), Expect = e-159
 Identities = 181/402 (45%), Positives = 223/402 (55%), Gaps = 91/402 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            HF+ ++ LG GD+G V+L +++    G     +A+KV+D++ +  R K+ R   E+ IL
Sbjct: 1   KHFKKIKLLGKGDVGRVFLVRLKG--TGK---LFALKVLDKKEMIKRNKVKRVLTEQEIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             LDHPFLPTLYA F+   Y CLVM+YCPGG+L+   QRQPGK      A          
Sbjct: 56  ATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVA---------- 105

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                             RFYAAE LLALEYLH++GIVYRDLKPEN+L+ E GHIMLSDF
Sbjct: 106 ------------------RFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDF 147

Query: 264 DLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV 323
           DLS + DV P  +   L                              S            
Sbjct: 148 DLSKQSDVEPPPVSKALRK---------------------------GSRRSSVNSIPS-- 178

Query: 324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTL 383
                               E  +E  + RS SFVGT EY+APEVISG GHGSAVDWWTL
Sbjct: 179 --------------------ETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTL 218

Query: 384 GVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP-RIGVSSSKEFEEVVKLQDLISKLLV 442
           G+ LYEMLYGTTPFKG N ++T  NILKK +TFP    VSSS         +DLI KLLV
Sbjct: 219 GILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSS--------ARDLIRKLLV 270

Query: 443 KNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNND 484
           K+P KR+GS +G+ EIK+H FF+G+NWALIR   PP +P  D
Sbjct: 271 KDPSKRLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRPD 312

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  213 bits (545), Expect = 1e-65
 Identities = 116/385 (30%), Positives = 167/385 (43%), Gaps = 109/385 (28%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F+  + +G G    V L + +          YA+K++D+  L   KK+    +EK +L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKET--NKE---YAIKILDKRQLIKEKKVKYVKIEKEVL 55

Query: 144 TMLD-HPFLPTLYAEF--EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           T L+ HP +  LY  F  E + Y   V+EY P G+L                        
Sbjct: 56  TRLNGHPGIIKLYYTFQDEENLY--FVLEYAPNGEL------------------------ 89

Query: 201 FFFFYNNLGFVHTDVTLFFNY-RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                  L ++    +L     RFYAAE LLALEYLH  GI++RDLKPEN+L+ +D HI 
Sbjct: 90  -------LQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIK 142

Query: 260 LSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK 319
           ++DF  +       K+L P  S E+ +                        S  +KN+++
Sbjct: 143 ITDFGTA-------KVLDPNSSPESNKGDATNID-----------------SQIEKNRRR 178

Query: 320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVD 379
                                               SFVGT EY++PE+++ +  G + D
Sbjct: 179 F----------------------------------ASFVGTAEYVSPELLNEKPAGKSSD 204

Query: 380 WWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISK 439
            W LG  +Y+ML G  PF+G N   T   ILK   +FP         F    K  DLI K
Sbjct: 205 LWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPN-------FPPDAK--DLIEK 255

Query: 440 LLVKNPKKRIGSLKGSVEIKRHEFF 464
           LLV +P+ R+G  +G  E+K H FF
Sbjct: 256 LLVLDPQDRLGVNEGYDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  214 bits (548), Expect = 4e-65
 Identities = 127/404 (31%), Positives = 177/404 (43%), Gaps = 105/404 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM-EKVI 142
           D F +++ +G G  G V+L + ++         YAMKV+ R++  I++        E+ I
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRDKDT-----GQVYAMKVL-RKSDMIKRNQIAHVRAERDI 54

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L   D P++  LY  F+   +  LVMEY PGGDL                      LL  
Sbjct: 55  LADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMN--------------------LL-- 92

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                      +       RFY AE +LAL+ +H +G ++RD+KP+N+L+  DGHI L+D
Sbjct: 93  ---IRKDVFPEETA-----RFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLAD 144

Query: 263 FDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT 322
           F L  K                                              K K     
Sbjct: 145 FGLCKK--------------------------------------------MNKAKD---- 156

Query: 323 VTTIREQVDGDHHDQELLDDPEVVAEPIN---ARSKSFVGTHEYLAPEVISGQGHGSAVD 379
               RE    D H+    D+  V          R+ S VGT +Y+APEV+ G  +G   D
Sbjct: 157 ----REYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECD 212

Query: 380 WWTLGVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLI 437
           WW+LGV LYEMLYG  PF  +  ++T   I+  K+ L FP      S E        DLI
Sbjct: 213 WWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPP-VSPEA------IDLI 265

Query: 438 SKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
            +LL  +P+ R+GS +   EIK H FFKGI+W  +R  KPP VP
Sbjct: 266 CRLLC-DPEDRLGSFE---EIKSHPFFKGIDWENLRETKPPFVP 305

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  172 bits (438), Expect = 6e-49
 Identities = 113/410 (27%), Positives = 179/410 (43%), Gaps = 104/410 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F  ++ +G G  G V L Q ++         YAMK + +  +  ++++     E+ IL
Sbjct: 1   DDFESIKVIGRGAFGEVRLVQKKDT-----GHIYAMKKLRKSEMLEKEQVAHVRAERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D+P++  LY  F+  +Y  L+MEY PGGD+                           
Sbjct: 56  AEADNPWVVKLYYSFQDENYLYLIMEYLPGGDM--------------------------- 88

Query: 204 FYNNLGFVHTDVTLFFNY--------RFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                      +TL            RFY AET+LA++ +H +G ++RD+KP+N+L+   
Sbjct: 89  -----------MTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAK 137

Query: 256 GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK 315
           GHI LSDF L   C  + K  R +  +  +      +        +P+ S     +   K
Sbjct: 138 GHIKLSDFGL---CTGLKKSHRTEF-YRILSHALPSNFLD--FISKPMSS--KRKAETWK 189

Query: 316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHG 375
             ++A+  +T                                VGT +Y+APEV    G+ 
Sbjct: 190 RNRRALAYST--------------------------------VGTPDYIAPEVFLQTGYN 217

Query: 376 SAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFP-RIGVSSSKEFEEVVK 432
              DWW+LGV +YEML G  PF  +N ++T   I+  K+ L FP  + +S         +
Sbjct: 218 KECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSP--------E 269

Query: 433 LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN 482
            +DLI +L     ++R+G+  G  EIK H FFKG++W  IR    P +P 
Sbjct: 270 AKDLIKRLCC-EAERRLGN-NGVNEIKSHPFFKGVDWEHIRERPAPIIPE 317

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  160 bits (405), Expect = 3e-44
 Identities = 120/408 (29%), Positives = 184/408 (45%), Gaps = 91/408 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F  ++ +G G  G V L Q ++         YAMK + +  +  + +L     E+ +L
Sbjct: 1   EDFHTVKVIGKGAFGEVRLVQKKDT-----GKIYAMKTLLKSEMFKKDQLAHVKAERDVL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D P++ +LY  F+ + Y  L+ME+ PGGDL                   + +  F  
Sbjct: 56  AESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTM---------------LIKYDTF-- 98

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                     DVT     RFY AE +LA+E +H +G ++RD+KP+N+L+   GHI LSDF
Sbjct: 99  --------SEDVT-----RFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDF 145

Query: 264 DLS---FKCD---VVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK 317
            LS    K        KLL+ K +   I+     ++ S    M    S    ++  KKN+
Sbjct: 146 GLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTM----SSKDQIATWKKNR 201

Query: 318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSA 377
           +     T                     V  P            +Y+APE+   QG+G  
Sbjct: 202 RLMAYST---------------------VGTP------------DYIAPEIFLQQGYGQE 228

Query: 378 VDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFPR-IGVSSSKEFEEVVKLQ 434
            DWW+LG  ++E L G  PF  EN+ +T   I+  ++ L FP  I +S   E        
Sbjct: 229 CDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAE-------- 280

Query: 435 DLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN 482
           DLI +L+  N + R+G   G+ EIK H FF+G++W  IR I+ P +P 
Sbjct: 281 DLIRRLIT-NAENRLGR-GGAHEIKSHPFFRGVDWDTIRQIRAPFIPQ 326

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score =  154 bits (392), Expect = 2e-42
 Identities = 114/401 (28%), Positives = 169/401 (42%), Gaps = 84/401 (20%)

Query: 85  HFRLLRRLGSGDIGNVYL-CQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            F  ++ +G G  G V L  ++    +      YAMK + +  + +R +      E+ IL
Sbjct: 2   MFVKIKTIGIGAFGEVCLVRKVDTNAL------YAMKTLRKADVLMRNQAAHVKAERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D+ ++  LY  F+       VM+Y PGGD+ +        R GI             
Sbjct: 56  AEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLL-----IRLGI------------- 97

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           F  +L             RFY AE   A+E +H MG ++RD+KP+N+L+  DGHI L+DF
Sbjct: 98  FEEDLA------------RFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDF 145

Query: 264 DLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV 323
            L   C            +    KY +         M+P        S   + + K +  
Sbjct: 146 GL---CT--------GFRWTHDSKYYQKGDHHRQDSMEP----SEEWSEIDRCRLKPLER 190

Query: 324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTL 383
              R+      H                    S VGT  Y+APEV+   G+    DWW++
Sbjct: 191 RRKRQHQRCLAH--------------------SLVGTPNYIAPEVLLRTGYTQLCDWWSV 230

Query: 384 GVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLL 441
           GV LYEML G  PF  +   +T + ++  +  L  P      S+E        DLI + L
Sbjct: 231 GVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQA-KLSRE------ASDLILR-L 282

Query: 442 VKNPKKRIGSLKGSVEIKRHEFFKGINWA-LIRSIKPPEVP 481
               + R+G   G+ EIK H FFKGI++A LIR  K P +P
Sbjct: 283 CCGAEDRLGK-NGADEIKAHPFFKGIDFASLIRRQKAPYIP 322

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  150 bits (381), Expect = 4e-42
 Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 10/114 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            +R+ +F GT EYLAPEV+ G+G+G AVDWW+LGV LYEML G  PF  E+ ++    IL
Sbjct: 147 GSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKIL 206

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           K PL FP   +S         + +DLIS LL K+P KR+GS     EIK H FF
Sbjct: 207 KDPLRFPE-FLSP--------EARDLISGLLQKDPTKRLGSGGAE-EIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  144 bits (365), Expect = 8e-40
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 35/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L + ++         YAMKV+ ++ +  RK++     E+ IL+ ++HPF+
Sbjct: 1   LGKGSFGKVLLVRKKDT-----GKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L+  F+      LV+EY PGG+L                        F        F 
Sbjct: 56  VKLHYAFQTEEKLYLVLEYAPGGEL------------------------FSHLSKEGRFS 91

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                     RFYAAE +LALEYLH +GI+YRDLKPEN+L+  DGHI L+DF L+
Sbjct: 92  EERA------RFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  142 bits (361), Expect = 4e-39
 Identities = 66/181 (36%), Positives = 85/181 (46%), Gaps = 37/181 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           + +L +LG G  G VYL + +           A+KV+ ++   I+K   R   E  IL  
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKT-----GKLVAIKVIKKKK--IKKDRERILREIKILKK 53

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           L HP +  LY  FE      LVMEYC GGDL                         F   
Sbjct: 54  LKHPNIVRLYDVFEDEDKLYLVMEYCEGGDL-------------------------FDLL 88

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
              G +  D       RFY  + L ALEYLH  GIV+RDLKPEN+L+ EDGH+ L+DF L
Sbjct: 89  KKRGRLSEDEA-----RFYLRQILSALEYLHSKGIVHRDLKPENILLDEDGHVKLADFGL 143

Query: 266 S 266
           +
Sbjct: 144 A 144

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  141 bits (357), Expect = 3e-38
 Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 12/133 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R+ +  GT EYLAPE+I  +G+G AVDWW LG+ +YEML G  PF  +N  +    IL+ 
Sbjct: 154 RTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEG 213

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINW-A 470
            + FP         F    K  DLI  LL  +  KR+G+LK G  +IK H +F GI+W A
Sbjct: 214 KVRFP-------SFFSPDAK--DLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIA 264

Query: 471 LI-RSIKPPEVPN 482
           L+ R I+ P +P 
Sbjct: 265 LLQRKIEAPFIPK 277

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  135 bits (343), Expect = 3e-36
 Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 39/182 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL--HRADMEKV 141
           D F  ++ LG+G  G V L + +         +YA+K++ +  + ++ K   H  + EK 
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGS-----GKYYALKILSKAKI-VKLKQVEHVLN-EKR 53

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           IL  + HPFL  LY  F+      LVMEY PGG+L++  ++    RF    A        
Sbjct: 54  ILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRK--SGRFPEPVA-------- 103

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                               RFYAA+ +LALEYLH + IVYRDLKPEN+L+  DG+I ++
Sbjct: 104 --------------------RFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKIT 143

Query: 262 DF 263
           DF
Sbjct: 144 DF 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  132 bits (335), Expect = 2e-35
 Identities = 58/126 (46%), Positives = 72/126 (57%), Gaps = 8/126 (6%)

Query: 344 EVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
           ++         K  VGT +Y+APEVI GQGH   VDWW+LG  LYE L G  PF GE  E
Sbjct: 148 QINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE 207

Query: 404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
           +   NIL   + +P     S        +  DLISKLLV +P+KR+G+ K   EIK H F
Sbjct: 208 EIFQNILNGKIEWPEDVEVSD-------EAIDLISKLLVPDPEKRLGA-KSIEEIKNHPF 259

Query: 464 FKGINW 469
           FKGI+W
Sbjct: 260 FKGIDW 265

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score =  133 bits (336), Expect = 1e-34
 Identities = 109/400 (27%), Positives = 174/400 (43%), Gaps = 90/400 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F  L+ +G G  G V L Q ++         YAMK++ +  +  ++++     E+ IL
Sbjct: 1   DDFESLKVIGRGAFGEVRLVQKKDT-----GHIYAMKILRKADMLEKEQVAHIRAERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D  ++  ++  F+      L+ME+ PGGD+     ++                    
Sbjct: 56  VEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK-------------------- 95

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                     D       +FY AET+LA++ +H +G ++RD+KP+N+L+   GH+ LSDF
Sbjct: 96  ----------DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDF 145

Query: 264 DLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV 323
            L                   ++K  +       T   P    F +++    +K+KA T 
Sbjct: 146 GLC----------------TGLKKAHRTEFYRNLTHNPPSDFSFQNMN----SKRKAETW 185

Query: 324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTL 383
              R Q+                       + S VGT +Y+APEV    G+    DWW+L
Sbjct: 186 KKNRRQL-----------------------AYSTVGTPDYIAPEVFMQTGYNKLCDWWSL 222

Query: 384 GVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLL 441
           GV +YEML G  PF  E  ++T   ++  K+ L FP        E     K +DLI +  
Sbjct: 223 GVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFP-------PEVPISEKAKDLILRFC 275

Query: 442 VKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
             + + RIGS  G  EIK H FF+G++W  IR  +P  +P
Sbjct: 276 T-DSENRIGS-NGVEEIKSHPFFEGVDWGHIRE-RPAAIP 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  127 bits (320), Expect = 8e-33
 Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 12/134 (8%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
             + +F GT +Y+APE++S Q +G AVDWW LGV LYEML G +PF+G++ ++   +IL+
Sbjct: 151 VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILE 210

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWA 470
             + +PR     SKE       + ++   L KNP+KR+G L  G  +IK H FF+ I+W 
Sbjct: 211 DEVRYPR---WLSKE------AKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWD 261

Query: 471 LI--RSIKPPEVPN 482
            +  + IKPP  P 
Sbjct: 262 KLERKEIKPPFKPK 275

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score =  127 bits (321), Expect = 1e-32
 Identities = 110/400 (27%), Positives = 179/400 (44%), Gaps = 90/400 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F  L+ +G G  G V L Q ++         YAMK++ +  +  ++++     E+ IL
Sbjct: 1   EDFESLKVIGRGAFGEVRLVQKKDT-----GHVYAMKILRKADMLEKEQVGHIRAERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D  ++  ++  F+      L+ME+ PGGD+     ++                    
Sbjct: 56  VEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK-------------------- 95

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                     D       +FY AET+LA++ +H +G ++RD+KP+N+L+   GH+ LSDF
Sbjct: 96  ----------DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDF 145

Query: 264 DLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV 323
            L   C  + K  R +       +    S+PS  T        F +++    +K+KA T 
Sbjct: 146 GL---CTGLKKAHRTEFY-----RNLNHSLPSDFT--------FQNMN----SKRKAETW 185

Query: 324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTL 383
              R Q+                       + S VGT +Y+APEV    G+    DWW+L
Sbjct: 186 KRNRRQL-----------------------AFSTVGTPDYIAPEVFMQTGYNKLCDWWSL 222

Query: 384 GVFLYEMLYGTTPFKGENNEKTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLL 441
           GV +YEML G  PF  E  ++T   ++  K+ L FP        E     K +DLI +  
Sbjct: 223 GVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFP-------PEVPISEKAKDLILRFC 275

Query: 442 VKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP 481
            +  + RIG+  G  EIK + FF+G++W  IR  +P  +P
Sbjct: 276 CEW-EHRIGA-PGVEEIKTNPFFEGVDWEHIRE-RPAAIP 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  122 bits (309), Expect = 7e-32
 Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 11/115 (9%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
             +  +FVGT EY+APEV+ G+G+G AVD W+LGV LYE+L G  PF G++    L   +
Sbjct: 150 GEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKI 209

Query: 411 KKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            KP   FP      S E       +DLI KLLVK+P+KR+     + E  +H FF
Sbjct: 210 GKPKPPFPPPEWDISPEA------KDLIRKLLVKDPEKRL----TAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  123 bits (311), Expect = 7e-32
 Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 18/137 (13%)

Query: 353 RSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF--KGENNEKTLIN 408
           R+ SF GT EY+APEVI G   GH  AVDWW+LGV  +E+L G +PF   GE N ++ I+
Sbjct: 162 RAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEIS 221

Query: 409 --ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
             ILK    FP       K      +  D I KLL K+PKKR+G+  G+ EIK H FF+G
Sbjct: 222 RRILKSKPPFP-------KTMSAEAR--DFIQKLLEKDPKKRLGA-NGADEIKNHPFFQG 271

Query: 467 INWALI--RSIKPPEVP 481
           I+W  +  + I  P  P
Sbjct: 272 IDWDDLAAKRIPAPFKP 288

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  123 bits (310), Expect = 8e-32
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 35/176 (19%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           +  G  G V+L + ++         YA+KV+ +  +  + ++ +   E+ IL+    P++
Sbjct: 1   ISKGAYGRVFLAKKKST-----GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             LY  F+      LVMEY PGGDL +                    LL      N+G +
Sbjct: 56  VKLYYSFQGKKNLYLVMEYLPGGDLAS--------------------LL-----ENVGSL 90

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSF 267
             DV      R Y AE +LALEYLH  GI++RDLKP+N+L+  +GH+ L+DF LS 
Sbjct: 91  DEDVA-----RIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSK 141

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  119 bits (301), Expect = 2e-30
 Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 12/138 (8%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+ +  GT EYLAPEVI  +GH  AVDWW LG+ +YEML G  PF  +N     
Sbjct: 148 AKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIY 207

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFK 465
             IL   L FPR         +   K  DLI KLLV +  +R+G++K G+ ++K H +FK
Sbjct: 208 EKILAGKLEFPR-------HLDLYAK--DLIKKLLVVDRTRRLGNMKNGADDVKNHRWFK 258

Query: 466 GINWALI--RSIKPPEVP 481
            ++W  +  R +KPP VP
Sbjct: 259 SVDWDDVPQRKLKPPIVP 276

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  118 bits (299), Expect = 2e-30
 Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           + LLR+LGSG  G VY  + +           A+K++ +      KK   A  E  IL  
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGT-----GKIVAVKILKKR-SEKSKKDQTARREIRILRR 54

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           L HP +  L   FE   +  LVMEYC GGDL+    R  G       AK           
Sbjct: 55  LSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKK---------- 102

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                              A + L  LEYLH  GI++RDLKPEN+L+ E+G + ++DF L
Sbjct: 103 ------------------IALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGL 144

Query: 266 S 266
           +
Sbjct: 145 A 145

Length = 260

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  118 bits (299), Expect = 2e-30
 Identities = 47/122 (38%), Positives = 78/122 (63%), Gaps = 14/122 (11%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE--KTLINIL 410
           ++ +F GT EY+APE+I  +G+  +VD+W+LG+ LYE+L G  PF  ++ +  +   +IL
Sbjct: 148 KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDIL 207

Query: 411 K--KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGI 467
           K    L FP     ++K         DLI +LL +NP++R+G+LKG + +IK+H++F G 
Sbjct: 208 KGNGKLEFPNYIDKAAK---------DLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGF 258

Query: 468 NW 469
           +W
Sbjct: 259 DW 260

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  119 bits (300), Expect = 4e-30
 Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              + +F GT EY+APE++   GHG AVDWW+LG  +Y+ML G  PF  EN +KT+  IL
Sbjct: 154 GTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKIL 213

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG-SVEIKRHEFFKGINW 469
           K  L  P      ++         DL+ KLL +NP  R+G+  G + E++ H FF+ +NW
Sbjct: 214 KGKLNLPPYLTPEAR---------DLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNW 264

Query: 470 --ALIRSIKPPEVPN 482
              L R ++PP  P 
Sbjct: 265 DDLLARKVEPPFKPL 279

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  119 bits (300), Expect = 5e-30
 Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 12/135 (8%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+ +  GT EYLAPEVI  +GHG AVDWWT+GV LYE + G  PF  +   +  
Sbjct: 165 AKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIY 224

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFFK 465
             IL   L FP         F+   + +DL+  LL  +  KR+G+LKG V  +K H +F 
Sbjct: 225 EKILAGRLKFPNW-------FDG--RARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFH 275

Query: 466 GINWALI--RSIKPP 478
           G NW  +  R    P
Sbjct: 276 GANWDKLYARYYPAP 290

Length = 329

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score =  118 bits (297), Expect = 3e-29
 Identities = 109/401 (27%), Positives = 173/401 (43%), Gaps = 82/401 (20%)

Query: 86  FRLLRRLGSGDIGNVYL-CQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
           F  ++ LG G  G V L C++           YAMK + ++ +  R ++     E+ IL 
Sbjct: 3   FVKIKTLGIGAFGEVCLACKVDT------HALYAMKTLRKKDVLNRNQVAHVKAERDILA 56

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
             D+ ++  LY  F+       VM+Y PGGD+ +   R                     F
Sbjct: 57  EADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRME------------------VF 98

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
              L             RFY AE  LA+E +H MG ++RD+KP+N+L+  DGHI L+DF 
Sbjct: 99  PEVLA------------RFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFG 146

Query: 265 LSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT 324
           L                +    KY +         M+P     S +     N +    + 
Sbjct: 147 LC-----------TGFRWTHNSKYYQKGSHIRQDSMEP-----SDLWDDVSNCRCGDRLK 190

Query: 325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLG 384
           T+ ++    H  Q  L             + S VGT  Y+APEV+  +G+    DWW++G
Sbjct: 191 TLEQRATKQH--QRCL-------------AHSLVGTPNYIAPEVLLRKGYTQLCDWWSVG 235

Query: 385 VFLYEMLYGTTPFKGENNEKTLINILKKPLTF---PRIGVSSSKEFEEVVKLQDLISKLL 441
           V L+EML G  PF      +T + ++    T    P++ +S         +  DLI+KL 
Sbjct: 236 VILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSP--------EAVDLITKLC 287

Query: 442 VKNPKKRIGSLKGSVEIKRHEFFKGINWAL-IRSIKPPEVP 481
             + ++R+G   G+ +IK H FF  ++++  IR+   P VP
Sbjct: 288 C-SAEERLGR-NGADDIKAHPFFSEVDFSSDIRTQPAPYVP 326

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  117 bits (294), Expect = 3e-29
 Identities = 63/138 (45%), Positives = 89/138 (64%), Gaps = 19/138 (13%)

Query: 353 RSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPF--KGENNEKTLIN- 408
           R+ SF GT EY+APE+I G+ GHG AVDWW+LG+ ++E+L G +PF  +GE N ++ ++ 
Sbjct: 162 RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR 221

Query: 409 -ILKKPLTFP-RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFK 465
            ILK    FP  IG  +          QDL+ KLL K+PKKR+G+  +G+ EIK H FFK
Sbjct: 222 RILKCDPPFPSFIGPEA----------QDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFK 271

Query: 466 GINWALI--RSIKPPEVP 481
           G++W  +  R + PP  P
Sbjct: 272 GLDWEALALRKVNPPFRP 289

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  116 bits (292), Expect = 4e-29
 Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 35/183 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F  ++ + +G  G VYL + +       Q F AMK ++++ L +R ++ +  +E+ IL
Sbjct: 1   EDFETIKLISNGAYGAVYLVRHKETR----QRF-AMKKINKQNLILRNQIQQVFVERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           T  ++PF+ +++  FE   + C+VMEY  GGD                       LL   
Sbjct: 56  TFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCAT--------------------LL--- 92

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
              N+G +  D+      R Y AET+LALEYLH  GIV+RDLKP+N+L+   GHI L+DF
Sbjct: 93  --KNIGALPVDMA-----RMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDF 145

Query: 264 DLS 266
            LS
Sbjct: 146 GLS 148

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  115 bits (290), Expect = 7e-29
 Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 12/131 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ +F GT EYLAPE++ G G+  AVDWWTLGV LYEML G  PF  EN  +    IL++
Sbjct: 149 KTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQE 208

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA-- 470
           PL FP  G             +DL+  LL ++P +R+G   G+ EIK H FF  ++W   
Sbjct: 209 PLRFPD-GFDR--------DAKDLLIGLLSRDPTRRLGY-NGAQEIKNHPFFSQLSWKKL 258

Query: 471 LIRSIKPPEVP 481
           L++ I+PP  P
Sbjct: 259 LMKGIQPPFKP 269

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  113 bits (284), Expect = 2e-28
 Identities = 51/116 (43%), Positives = 67/116 (57%), Gaps = 6/116 (5%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K FVGT +YLAPE I G G     DWW+LG  ++E L+G  PF  E  +    NIL + 
Sbjct: 150 NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRR 209

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           + +P       KEF     + DLI++LL  +P KR+G+  G  EIK H FFK INW
Sbjct: 210 INWPE----EVKEFCSPEAV-DLINRLLCMDPAKRLGA-NGYQEIKSHPFFKSINW 259

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  114 bits (286), Expect = 4e-28
 Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 9/132 (6%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL- 410
             + S VG+ +Y+APEV+ G+G+   VD+W+LG  LYE L G  PF G    +T  N+  
Sbjct: 153 TYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKY 212

Query: 411 -KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
            K+ L  P   V     F    +  DLI+KL+  +P +R GSL+   +IK H FFK ++W
Sbjct: 213 WKETLQRP---VYDDPRFNLSDEAWDLITKLI-NDPSRRFGSLE---DIKNHPFFKEVDW 265

Query: 470 ALIRSIKPPEVP 481
             +R +KPP VP
Sbjct: 266 NELRELKPPFVP 277

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  112 bits (283), Expect = 1e-27
 Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 14/139 (10%)

Query: 348 EPINARSK--SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           E I+   K  SF GT EY+APEV++ +GH  + DWW+ GV ++EML G+ PF+G++ ++T
Sbjct: 147 ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKET 206

Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFF 464
           +  ILK  L  P+     +         Q L+  L  +NP  R+G+   G  EIKRH FF
Sbjct: 207 MTMILKAKLGMPQFLSPEA---------QSLLRALFKRNPANRLGAGPDGVEEIKRHPFF 257

Query: 465 KGINWALI--RSIKPPEVP 481
             I+W  +  R IKPP  P
Sbjct: 258 STIDWNKLYRREIKPPFKP 276

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score =  112 bits (282), Expect = 2e-27
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 12/131 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +++F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF GE+ ++   +I++  
Sbjct: 158 TRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHN 217

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINWALI 472
           +++P+   S SKE   + K       LL K+P KR+G    G  +I+ H FF+ I+W  +
Sbjct: 218 VSYPK---SLSKEAVSICK------GLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKL 268

Query: 473 --RSIKPPEVP 481
             R I+PP  P
Sbjct: 269 ERREIQPPFKP 279

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  112 bits (281), Expect = 2e-27
 Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 20/137 (14%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL-- 410
           R+ +F GT E+LAPEV++   +  AVDWW LGV +YEML G +PF G++ E+   +I+  
Sbjct: 157 RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVND 216

Query: 411 --KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGI 467
             + P    R  +S             ++ +LL +NP++R+GS  K + ++K+  FF+ I
Sbjct: 217 EVRYPRFLSREAIS-------------IMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI 263

Query: 468 NWA--LIRSIKPPEVPN 482
           NW   L R IKPP VP 
Sbjct: 264 NWDDLLARKIKPPFVPT 280

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  110 bits (276), Expect = 1e-26
 Identities = 55/135 (40%), Positives = 72/135 (53%), Gaps = 11/135 (8%)

Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
            +  + +F GT EYLAPEV+  Q +   VDWW LG  LYEMLYG  PF   +  +   NI
Sbjct: 149 HSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNI 208

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           L KPL   +  +S S         + L+  LL K+  KR+G+    +EIK H FF  INW
Sbjct: 209 LNKPLRL-KPNISVSA--------RHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINW 259

Query: 470 A--LIRSIKPPEVPN 482
              + + I PP  PN
Sbjct: 260 DDLVNKKITPPFNPN 274

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  108 bits (272), Expect = 2e-26
 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 37/181 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKVI 142
           D    ++ +G+G  G V+L + R     + + +YA+KV+   E + ++++ H  + EK +
Sbjct: 1   DDLERIKTVGTGTFGRVHLVRDR-----ISEHYYALKVMAIPEVIRLKQEQHVHN-EKRV 54

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  + HPF+  L+       +  ++MEY PGG+L++   R  G+                
Sbjct: 55  LKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFS-YLRNSGR---------------- 97

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
            F N+ G             FYA+E + ALEYLH   IVYRDLKPEN+L+ ++GHI L+D
Sbjct: 98  -FSNSTG------------LFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTD 144

Query: 263 F 263
           F
Sbjct: 145 F 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  109 bits (273), Expect = 2e-26
 Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 14/133 (10%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
            ++ +F GT +Y+APE++ GQ +  +VDWW+ GV LYEML G +PF GE+ ++   +IL 
Sbjct: 151 GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILN 210

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL 471
               FPR     SKE       +D +SKL  ++P KR+G   G  +I++H FF+GI+W  
Sbjct: 211 DRPHFPR---WISKE------AKDCLSKLFERDPTKRLGV-DG--DIRQHPFFRGIDWER 258

Query: 472 I--RSIKPPEVPN 482
           +  R I PP  P 
Sbjct: 259 LEKREIPPPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  108 bits (271), Expect = 5e-26
 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 12/134 (8%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL 
Sbjct: 150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILM 209

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINWA 470
           + + FPR     +K          L++ LL K+PK+R+G       EI  H FF  INW 
Sbjct: 210 EEIRFPRTLSPEAK---------SLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQ 260

Query: 471 LI--RSIKPPEVPN 482
            +  + ++PP  P 
Sbjct: 261 DVVQKKLEPPFKPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  103 bits (260), Expect = 2e-25
 Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 43/211 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G VYL + +           A+K++ +E       L     E  IL  L+HP +
Sbjct: 1   LGEGGFGTVYLARDKKT-----GKKVAIKIIKKEDS--SSLLEELLREIEILKKLNHPNI 53

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             LY  FE  ++  LVMEYC GG L    +   GK   +S  +                 
Sbjct: 54  VKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGK---LSEDEI---------------- 94

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-REDGHIMLSDFDLSFKCD 270
                          + L  LEYLH  GI++RDLKPEN+L+  ++G + L+DF LS    
Sbjct: 95  ----------LRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT 144

Query: 271 VVPKLLRPK------LSFEAIEKYEKCSIPS 295
               LL+        ++ E +      S  S
Sbjct: 145 SDKSLLKTIVGTPAYMAPEVLLGKGYYSEKS 175

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  105 bits (263), Expect = 2e-25
 Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 16/138 (11%)

Query: 348 EPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFK--GENNE 403
           E    R+ SF GT EY+AP+++ G   GH  AVDWW++GV +YE+L G +PF   GE N 
Sbjct: 157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNS 216

Query: 404 KTLIN--ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKR 460
           +  I+  ILK    +P       +E   + K  D+I +LL+K+PKKR+G     + EIK+
Sbjct: 217 QAEISRRILKSEPPYP-------QEMSALAK--DIIQRLLMKDPKKRLGCGPSDADEIKK 267

Query: 461 HEFFKGINWALIRSIKPP 478
           H FF+ INW  + + K P
Sbjct: 268 HPFFQKINWDDLAAKKVP 285

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  105 bits (264), Expect = 3e-25
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 12/122 (9%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K   GT EY+APEVI  QG+G  VDWW +G+ LYE L G  PF G+  E+    ++   +
Sbjct: 174 KQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDI 233

Query: 415 TFPRIGVSSSKEFEEVVKL--QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW-AL 471
            +P        E +E +    QDLIS+LL +NP +R+G+  G+ E+K+H FF G++W  L
Sbjct: 234 EWP--------EGDEALPADAQDLISRLLRQNPLERLGT-GGAFEVKQHRFFLGLDWNGL 284

Query: 472 IR 473
           +R
Sbjct: 285 LR 286

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  106 bits (265), Expect = 3e-25
 Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 35/179 (19%)

Query: 89  LRRLGSGDIGNVYLC-QIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
           L+ LG G  G V+L  +I  P  G     YAMKV+ +  L +R ++ R  ME+ IL  ++
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDAGQ---LYAMKVLKKATLKVRDRV-RTKMERDILAEVN 56

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           HPF+  L+  F+      L++++  GGDL+    ++                        
Sbjct: 57  HPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE------------------------ 92

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + F   DV      +FY AE  LAL++LH +GI+YRDLKPEN+L+ E+GHI L+DF LS
Sbjct: 93  VMFTEEDV------KFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  104 bits (261), Expect = 9e-25
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 12/133 (9%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL 
Sbjct: 150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILM 209

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINWA 470
           + + FPR   + +K          L+S LL+K+P KR+ G    + EI RH FF G+NW 
Sbjct: 210 EDIKFPRTLSADAKS---------LLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQ 260

Query: 471 LI--RSIKPPEVP 481
            +  + + PP  P
Sbjct: 261 DVYDKKLVPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score =  103 bits (258), Expect = 2e-24
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 351 NARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           N  + +F GT EYLAPEV+   +G+   VD+W+LGV ++EM  G +PF  E+ ++   NI
Sbjct: 150 NKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNI 209

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
               + FP+  +S           +  +  LL +NP+ R+G+ + +VE+K H FF  I+W
Sbjct: 210 AFGKVRFPKNVLSDEG--------RQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDW 261

Query: 470 ALI--RSIKPPEVPNND 484
            L+  + I PP  P  D
Sbjct: 262 DLLSKKQITPPFKPIVD 278

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  101 bits (253), Expect = 4e-24
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 13/118 (11%)

Query: 351 NARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE---KTL 406
           ++   +FVGT  Y+APEV+  G G+G  VD W+LGV LYE+L G  PF GEN     + +
Sbjct: 152 SSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLI 211

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
             IL  PL F     SS  E     + +DLI K L K+P KR  +     EI +H +F
Sbjct: 212 RRILGPPLEFDEPKWSSGSE-----EAKDLIKKCLNKDPSKRPTAE----EILQHPWF 260

Length = 260

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score =  102 bits (256), Expect = 4e-24
 Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 12/131 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K+F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF+GE+ ++   +I++  
Sbjct: 158 TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN 217

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI 472
           + +P+   S SKE   + K       L+ K+P KR+G   +G  +IK H FF+ I+W  +
Sbjct: 218 VAYPK---SMSKEAVAICK------GLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL 268

Query: 473 --RSIKPPEVP 481
             + ++PP  P
Sbjct: 269 ERKEVQPPYKP 279

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score =  102 bits (255), Expect = 4e-24
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 23/162 (14%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +A++ +F GT +Y+APE++ GQ + ++VDWW+ GV LYEML G +PF G + E+   +I 
Sbjct: 150 DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIR 209

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
                +PR     +K         D++ KL V+ P++R+G +KG  +I++H FF+ I+W+
Sbjct: 210 MDNPCYPRWLTREAK---------DILVKLFVREPERRLG-VKG--DIRQHPFFREIDWS 257

Query: 471 LI--RSIKPPEVPN----NDLYCKIKKKVYV---PKLSKQER 503
            +  R I+PP  P     ND  C    K ++   P+LS  +R
Sbjct: 258 ALEEREIEPPFKPKVKSAND--CSNFDKEFLNEKPRLSVTDR 297

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  100 bits (252), Expect = 6e-24
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 39/174 (22%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L ++++         +A+K V +  +    +      EK IL   +HPF+
Sbjct: 1   LGVGGFGRVELVKVKSKNR-----TFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             LY  F+   Y  ++MEYC GG+L+   +                              
Sbjct: 56  VKLYRTFKDKKYIYMLMEYCLGGELWTILR------------------------------ 85

Query: 212 HTDVTLFFNY--RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
             D  LF  Y  RFY A  +LA EYLH  GI+YRDLKPEN+L+  +G++ L DF
Sbjct: 86  --DRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDF 137

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  102 bits (255), Expect = 7e-24
 Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 35/182 (19%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
            F++L ++G G  G V+L + ++          A+K + +  L    ++     E+ ILT
Sbjct: 2   DFQILTQVGQGGYGQVFLAKKKDT-----GEIVALKRMKKSLLFKLNEVRHVLTERDILT 56

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
                +L  L   F+   Y  L MEY PGGD                             
Sbjct: 57  TTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRT-------------------------L 91

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
            NNLG +  D       RFY AE   A++ LH +G ++RDLKPEN L+   GHI L+DF 
Sbjct: 92  LNNLGVLSEDHA-----RFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFG 146

Query: 265 LS 266
           LS
Sbjct: 147 LS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score =  101 bits (253), Expect = 8e-24
 Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 13/132 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + +F GT +Y+APE++    +G +VDWW +GV LYEML G  PF+ EN +     IL   
Sbjct: 153 TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE 212

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHEFFKGINWAL 471
           + +P      S++  +++K        + KNP  R+GSL   G   I RH FFK ++W  
Sbjct: 213 VVYP---TWLSQDAVDILK------AFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEK 263

Query: 472 I--RSIKPPEVP 481
           +  R I+PP  P
Sbjct: 264 LNRRQIEPPFRP 275

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score =  101 bits (253), Expect = 8e-24
 Identities = 61/142 (42%), Positives = 75/142 (52%), Gaps = 17/142 (11%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           N  + +F GT EYLAPEV+  Q +   VDWW LG  LYEMLYG  PF   N  +   NIL
Sbjct: 150 NGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 209

Query: 411 KKPLTF-PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
            KPL   P I  S+          + L+  LL K+  KR+G+    +EIK H FF  INW
Sbjct: 210 NKPLQLKPNITNSA----------RHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINW 259

Query: 470 --ALIRSIKPPEVPN----NDL 485
              + + I PP  PN    NDL
Sbjct: 260 DDLINKKITPPFNPNVSGPNDL 281

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score =  100 bits (251), Expect = 9e-24
 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 33/175 (18%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V  CQ++          YA K +D++ L  RK    A  EK IL  +   F+
Sbjct: 1   LGKGGFGEVCACQVKAT-----GKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
            +L   FE     CLVM    GGDL          ++ I +                GF 
Sbjct: 56  VSLAYAFETKDDLCLVMTLMNGGDL----------KYHIYN------------VGEPGFP 93

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                      FYAA+ +  LE+LH   IVYRDLKPENVL+ + G++ +SD  L+
Sbjct: 94  EARA------IFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score =  101 bits (253), Expect = 1e-23
 Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 20/147 (13%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              + +F GT +Y+APE++    +G +VDWW LGV +YEM+ G  PF+ +N +    +IL
Sbjct: 150 GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESIL 209

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG---SLKGSVEIKRHEFFKGI 467
              + +P   V  SKE   ++K        + KNP KR+G   S  G   IK+H FFK I
Sbjct: 210 HDDVLYP---VWLSKEAVSILK------AFMTKNPNKRLGCVASQGGEDAIKQHPFFKEI 260

Query: 468 NWALI--RSIKPPEVPNNDLYCKIKKK 492
           +W L+  R IKPP  P      KIK K
Sbjct: 261 DWVLLEQRKIKPPFKP------KIKTK 281

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 35/182 (19%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
           HF LLR +G G  G V + Q R+      +  +AMK ++++    +  +     E+ IL 
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDT-----KKMFAMKYMNKQKCVEKGSVRNVLNERRILQ 55

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
            L+HPFL  L+  F+      LV++   GGDL          R+ +S             
Sbjct: 56  ELNHPFLVNLWYSFQDEENMYLVVDLLLGGDL----------RYHLSQKV---------- 95

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
                F    V      +F+  E +LALEYLH  GI++RD+KP+N+L+ E GH+ ++DF+
Sbjct: 96  ----KFSEEQV------KFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFN 145

Query: 265 LS 266
           ++
Sbjct: 146 IA 147

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score =  101 bits (252), Expect = 1e-23
 Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 12/131 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +++F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF GE+ ++   +I++  
Sbjct: 158 TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHN 217

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI 472
           +++P+   S SKE   + K       L+ K+P KR+G   +G  +I+ H FF+ I+W  +
Sbjct: 218 VSYPK---SLSKEAVSICK------GLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKL 268

Query: 473 --RSIKPPEVP 481
             R I+PP  P
Sbjct: 269 ENREIQPPFKP 279

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 99.0 bits (247), Expect = 6e-23
 Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 39/183 (21%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           FR L  LG G  G V L + +          YA+K + +  +  R ++     EK I   
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKT-----GELYAIKALKKGDIIARDEVESLMCEKRIFET 55

Query: 146 LD---HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
            +   HPFL  L+A F+   + C VMEY  GGDL                          
Sbjct: 56  ANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDL-------------------------- 89

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                +  +HTDV       FYAA  +L L+YLH   IVYRDLK +N+L+  +G + ++D
Sbjct: 90  -----MMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIAD 144

Query: 263 FDL 265
           F L
Sbjct: 145 FGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 99.5 bits (248), Expect = 6e-23
 Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 20/136 (14%)

Query: 354 SKSFVGTHEYLAPEV---ISGQG---HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           SK  VGT +Y+APEV   ++G G   +G   DWW+LGV  YEM+YG +PF    + KT  
Sbjct: 160 SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYN 219

Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           NI+  ++ L FP      S +F       DLI  LL    K+R+G  +G   +  H FF 
Sbjct: 220 NIMNFQRFLKFPE-DPKVSSDF------LDLIQSLLC-GQKERLG-YEG---LCCHPFFS 267

Query: 466 GINWALIRSIKPPEVP 481
            I+W  IR+  PP VP
Sbjct: 268 KIDWNNIRNSLPPFVP 283

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 97.6 bits (244), Expect = 7e-23
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 36/184 (19%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
            + +++++G G  G VYL + ++         Y +K +D   ++ +++   A  E  IL 
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSD-----GKLYVLKEIDLSNMSEKERE-DALNEVKILK 54

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA--RQRQPGKRFGISSAKFVFFLLFF 202
            L+HP +   Y  FE     C+VMEY  GGDL     +Q++ GK F     + +   L +
Sbjct: 55  KLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPF---PEEQI---LDW 108

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
           F                       +  LAL+YLH   I++RD+KP+N+ +  +G + L D
Sbjct: 109 FV----------------------QLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGD 146

Query: 263 FDLS 266
           F +S
Sbjct: 147 FGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 98.9 bits (246), Expect = 8e-23
 Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 11/131 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + +F GT EYLAPEV+  + +   VDWW LG  LYEMLYG  PF   +  +   NIL KP
Sbjct: 153 TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKP 212

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI- 472
           L  P           + V   DL+  LL K+ ++R+G+    +EIK H FF  INW  + 
Sbjct: 213 LQLPG---------GKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLY 263

Query: 473 -RSIKPPEVPN 482
            + I PP  PN
Sbjct: 264 HKRITPPYNPN 274

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 98.7 bits (246), Expect = 9e-23
 Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 35/174 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L + +         +YAMK++ +E +  + ++     E  +L    HPFL
Sbjct: 3   LGKGTFGKVILVREKAT-----GKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFL 57

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L   F+     C VMEY  GG+L                         FF  +     
Sbjct: 58  TALKYSFQTHDRLCFVMEYANGGEL-------------------------FFHLSRERVF 92

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
             D       RFY AE + AL YLH   +VYRDLK EN+++ +DGHI ++DF L
Sbjct: 93  SEDRA-----RFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 98.5 bits (245), Expect = 1e-22
 Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 11/131 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + +F GT EYLAPEVI  Q + + VDWW LG  LYEMLYG  PF   +  +   NIL KP
Sbjct: 153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKP 212

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI- 472
           L   R G S +           ++ +LL K+ ++R+G+ +  +EI+ H FF+ ++W  + 
Sbjct: 213 LVL-RPGASLTA--------WSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLE 263

Query: 473 -RSIKPPEVPN 482
            + I PP  PN
Sbjct: 264 QKKIPPPFNPN 274

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 36/178 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DH 148
           + LG G  G V L +++          YA+KV+ ++ +     +     EK +L +   H
Sbjct: 1   KVLGKGSFGKVLLAELKGT-----DELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  L++ F+       VMEY  GGDL    QR    RF    A               
Sbjct: 56  PFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS--GRFDEPRA--------------- 98

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                        RFYAAE +L L++LH  GI+YRDLK +NVL+  +GHI ++DF + 
Sbjct: 99  -------------RFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMC 143

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 97.7 bits (243), Expect = 2e-22
 Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 14/131 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R+ +F GT +Y+APE++ G  +  +VDWW+ GV LYEML G +PF G++ ++   +I   
Sbjct: 152 RASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVD 211

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
              +PR     SK         D++ KL  ++P +R+G +     I+ H FFK INW  +
Sbjct: 212 TPHYPRWITKESK---------DILEKLFERDPTRRLGVVG---NIRGHPFFKTINWTAL 259

Query: 473 --RSIKPPEVP 481
             R + PP  P
Sbjct: 260 EKRELDPPFKP 270

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 97.4 bits (242), Expect = 3e-22
 Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 12/133 (9%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL 
Sbjct: 151 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILM 210

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINWA 470
           + + FPR     +K          L+S LL K+PK+R+ G    + EI +H+FF GI W 
Sbjct: 211 EEIRFPRTLSPEAKS---------LLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQ 261

Query: 471 LI--RSIKPPEVP 481
            +  + + PP  P
Sbjct: 262 DVYEKKLVPPFKP 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score =   99 bits (249), Expect = 3e-22
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 14/129 (10%)

Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           +GT +YLAPE++ G+ HG AVDWW LGV L+E L G  PF  E  ++   NIL + + +P
Sbjct: 541 LGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPWP 600

Query: 418 RIGVSSSKEFEEVVKL--QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSI 475
                   E EE + +  Q+ I  LL  +P KR G LK   E+K+H  F G++W  +++ 
Sbjct: 601 --------EGEEKLSVNAQNAIEILLTMDPTKRAG-LK---ELKQHPLFHGVDWENLQNQ 648

Query: 476 KPPEVPNND 484
             P +P  D
Sbjct: 649 TMPFIPQPD 657

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 97.0 bits (241), Expect = 3e-22
 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 12/133 (9%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL 
Sbjct: 150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILM 209

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW- 469
           + + FPR     +K          L++ LL K+PK+R+ G    + E+  H FF  INW 
Sbjct: 210 EEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQ 260

Query: 470 -ALIRSIKPPEVP 481
             + + + PP  P
Sbjct: 261 DVVQKKLLPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 94.9 bits (236), Expect = 1e-21
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 34/183 (18%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM-EKVILT 144
           F LLR LG+G  G V+L  +R          YAMKV+ +  +  + K       E+ +L 
Sbjct: 2   FELLRVLGTGAYGKVFL--VRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLE 59

Query: 145 MLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
            +   PFL TL+  F+      L+++Y  GG+L                        F  
Sbjct: 60  AVRRCPFLVTLHYAFQTDTKLHLILDYVNGGEL------------------------FTH 95

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
            Y    F  ++V      R Y AE +LAL++LH +GI+YRD+K EN+L+  +GH++L+DF
Sbjct: 96  LYQREHFTESEV------RVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDF 149

Query: 264 DLS 266
            LS
Sbjct: 150 GLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 36/179 (20%)

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL-TMLD 147
           L+ +  G  G+VYL + R         ++A+KV+ +  +  + ++     E+ I+    +
Sbjct: 1   LKPISKGAFGSVYLAKKR-----STGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGE 55

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
            P++  LY  F++  Y  LVMEY  GGD  +  +                          
Sbjct: 56  SPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKT------------------------- 90

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           LG +  D       + Y AE +L +E LH  GI++RD+KPEN+L+ + GH+ L+DF LS
Sbjct: 91  LGGLPEDWA-----KQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLS 144

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 95.6 bits (238), Expect = 1e-21
 Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 19/138 (13%)

Query: 353 RSKSFVGTHEYLAPEVI----SGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +S   VGT +Y++PE++     G+G  G   DWW+LGV +YEMLYG TPF  E+  +T  
Sbjct: 159 QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG 218

Query: 408 NIL--KKPLTFP--RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
            I+  K+   FP     VS           +DLI +L+   P+ R+G   G  + K H F
Sbjct: 219 KIMNHKEHFQFPPDVTDVSEEA--------KDLIRRLICS-PETRLGR-NGLQDFKDHPF 268

Query: 464 FKGINWALIRSIKPPEVP 481
           F+GI+W  IR+   P VP
Sbjct: 269 FEGIDWDNIRNSTAPYVP 286

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK-VILTMLDHPF 150
           +G G  G V L + +         FYA+KV+ ++A+  +K+      E+ V+L  + HPF
Sbjct: 3   IGKGSFGKVLLAKHK-----ADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+ +     V++Y  GG+L+   QR+  + F    A                 
Sbjct: 58  LVGLHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRA----------------- 98

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                      RFYAAE   AL YLH + I+YRDLKPEN+L+   GH++L+DF L
Sbjct: 99  -----------RFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 93.7 bits (233), Expect = 4e-21
 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 22/142 (15%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF--------KGENNEKT 405
           + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDY 212

Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHE 462
           L   IL+K +  PR   S S      VK   ++   L K+PK+R+G     G  +IK H 
Sbjct: 213 LFQVILEKQIRIPR---SLS------VKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHP 263

Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ I+W L+  + + PP  PN
Sbjct: 264 FFRNIDWDLLEQKQVLPPYKPN 285

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 92.9 bits (231), Expect = 5e-21
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 16/135 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--GENNEKTLIN--IL 410
           K   GT  Y+APEV+ G+ +  +VDW+ LG  LYEM+ G +PF+   E  EK  +    L
Sbjct: 152 KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTL 211

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
           +  + +P        +F    + +DL   LL K+P+KR+G   GS  E++ H  FK +NW
Sbjct: 212 EMAVEYP-------DKFSP--EAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNW 262

Query: 470 ALIRS--IKPPEVPN 482
             + +  ++PP +P+
Sbjct: 263 RRLEAGMLEPPFIPD 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 93.7 bits (233), Expect = 5e-21
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 38/196 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F +   +G G  G V +  +R    G     YAMKV+ +  L  ++ +   + E+ IL
Sbjct: 1   KDFDVKSLVGRGHFGEVQV--VREKATG---DIYAMKVMKKSVLLAQETVSFFEEERDIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           ++ + P++P L   F+      LVMEY PGGDL +   R   +                 
Sbjct: 56  SISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQ----------------- 98

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           F  ++             +FY AE +LA+  +H MG V+RD+KPENVL+   GHI L+DF
Sbjct: 99  FDEDMA------------QFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADF 146

Query: 264 DLSFKCD----VVPKL 275
             + +      V  KL
Sbjct: 147 GSAARLTANKMVNSKL 162

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 93.3 bits (232), Expect = 6e-21
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 35/181 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L  F +   LG+G  G V + + +    G  + +YA+K + +  +   K++     EK I
Sbjct: 17  LSDFEMGETLGTGSFGRVRIAKHK----GTGE-YYAIKCLKKREILKMKQVQHVAQEKSI 71

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  L HPF+  +   F+  +    ++E+  GG+L+    R+ G+                
Sbjct: 72  LMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELF-THLRKAGR---------------- 114

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
            F N       DV      +FY AE +LA EYLH   I+YRDLKPEN+L+   GH+ ++D
Sbjct: 115 -FPN-------DVA-----KFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTD 161

Query: 263 F 263
           F
Sbjct: 162 F 162

Length = 329

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 93.5 bits (232), Expect = 7e-21
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 36/184 (19%)

Query: 86  FRLLRRLGSGDIGNVYLC-QIRNPMVGLPQCFYAMKVVDREALAIRKKL--HRADMEKVI 142
           F LL+ LG+G  G V+L  ++     G     YAMKV+ + AL  + K   H      V+
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVTGHDTGK---LYAMKVLQKAALVQKAKTVEHTRTERNVL 58

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
             +   PFL TL+  F+      L+++Y  GG++                        F 
Sbjct: 59  EHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEM------------------------FT 94

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
             Y    F   +V      RFY+ E +LALE+LH +GIVYRD+K EN+L+  +GH++L+D
Sbjct: 95  HLYQRDNFSEDEV------RFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTD 148

Query: 263 FDLS 266
           F LS
Sbjct: 149 FGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 17/137 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQGH----GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           R  + VGT +Y++PEV+  QG     G   DWW++GVFLYEML G TPF  ++   T   
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 258

Query: 409 IL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
           I+  K  LTFP        + E   + +DLI   L      R+G   G  EIK H FFK 
Sbjct: 259 IMDHKNSLTFP-------DDIEISKQAKDLICAFLTDRE-VRLGR-NGVDEIKSHPFFKN 309

Query: 467 --INWALIRSIKPPEVP 481
               +  IR    P VP
Sbjct: 310 DQWTFDNIRETVAPVVP 326

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 91.8 bits (228), Expect = 1e-20
 Identities = 63/185 (34%), Positives = 81/185 (43%), Gaps = 37/185 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           FR  R LG G  G V  CQ+R          YA K ++++ +  RK    A  EK IL  
Sbjct: 2   FRHYRVLGKGGFGEVCACQVR-----ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK 56

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           ++  F+ +L   +E     CLV+    GGDL                         F  Y
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTLMNGGDLK------------------------FHIY 92

Query: 206 N--NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           N  N GF            FYAAE    LE LH   IVYRDLKPEN+L+ + GHI +SD 
Sbjct: 93  NMGNPGFDEERAV------FYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDL 146

Query: 264 DLSFK 268
            L+ +
Sbjct: 147 GLAVE 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 91.6 bits (227), Expect = 1e-20
 Identities = 64/185 (34%), Positives = 80/185 (43%), Gaps = 37/185 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           FR  R LG G  G V  CQ+R          YA K ++++ +  RK    A  EK IL  
Sbjct: 2   FRQYRVLGKGGFGEVCACQVR-----ATGKMYACKRLEKKRIKKRKGESMALNEKQILEK 56

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           ++  F+  L   +E     CLV+    GGDL                         F  Y
Sbjct: 57  VNSQFVVNLAYAYETKDALCLVLTIMNGGDLK------------------------FHIY 92

Query: 206 N--NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           N  N GF            FYAAE L  LE LH    VYRDLKPEN+L+ + GHI +SD 
Sbjct: 93  NMGNPGFEEERAL------FYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDL 146

Query: 264 DLSFK 268
            L+ K
Sbjct: 147 GLAVK 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 35/174 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L  +R    G    +YAMK++ +E +  + ++     E  +L    HPFL
Sbjct: 3   LGKGTFGKVIL--VREKATGR---YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL 57

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L   F+     C VMEY  GG+L+    R+  + F    A                  
Sbjct: 58  TALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERA------------------ 97

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                     RFY AE + ALEYLH   +VYRD+K EN+++ +DGHI ++DF L
Sbjct: 98  ----------RFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 89.5 bits (223), Expect = 5e-20
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 42/185 (22%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD--REALAIRKKLHRADMEKVIL 143
           +     LG G  G+VYL   ++          A+K V+   ++    + L R   E  IL
Sbjct: 2   WTRGELLGRGSFGSVYLALDKDT-----GELMAVKSVELSGDSEEELEALER---EIRIL 53

Query: 144 TMLDHPFLPT-LYAEF-EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           + L HP +     +E  E  +   + +EY  GG L +       K+FG            
Sbjct: 54  SSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLL-----KKFG------------ 96

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                        +      R Y  + L  L YLH  GIV+RD+K  N+LV  DG + L+
Sbjct: 97  -------KLPEPVI------RKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLA 143

Query: 262 DFDLS 266
           DF  +
Sbjct: 144 DFGCA 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 90.2 bits (224), Expect = 6e-20
 Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 35/179 (19%)

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR--KKLHRADMEKVILTML 146
           L+ LG G  G V+  Q+R          +AMKV+ ++A  +R  K       E+ IL  +
Sbjct: 1   LKVLGKGGYGKVF--QVRKVTGADTGKIFAMKVL-KKATIVRNQKDTAHTKAERNILEAV 57

Query: 147 DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN 206
            HPF+  L   F+      L++EY  GG+L+   +R+                       
Sbjct: 58  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE----------------------- 94

Query: 207 NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
             G    D        FY +E  LALE+LH  GI+YRDLKPEN+L+   GH+ L+DF L
Sbjct: 95  --GIFMEDTA-----CFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 90.2 bits (224), Expect = 6e-20
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 36/173 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM-LDHPF 150
           LG G  G V L +++         F+A+K + ++ +     +    +E+ +L +  +HPF
Sbjct: 3   LGKGSFGKVMLAELKGT-----NEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+   +   VMEY  GGDL      Q   RF  + A                 
Sbjct: 58  LTHLFCTFQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARA----------------- 98

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                      RFYAAE +  L++LH  GI+YRDLK +NVL+ +DGHI ++DF
Sbjct: 99  -----------RFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADF 140

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 90.8 bits (225), Expect = 6e-20
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 16/140 (11%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ ++ R+ +  GT EY+APE++   GHG A DWWTLG+F+YE+L G  PF    NE  L
Sbjct: 178 AKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYA--NEPLL 235

Query: 407 I--NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEF 463
           I   IL+  + FP+   ++ K          L+ KLL  +  KR G+L KG+  +K H +
Sbjct: 236 IYQKILEGIIYFPKFLDNNCKH---------LMKKLLSHDLTKRYGNLKKGAQNVKEHPW 286

Query: 464 FKGINWA--LIRSIKPPEVP 481
           F  I+W   L ++++ P  P
Sbjct: 287 FGNIDWVSLLHKNVEVPYKP 306

Length = 340

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 20/139 (14%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK------GENNEKTLI 407
           + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF         N E  L 
Sbjct: 153 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLF 212

Query: 408 N-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRHEFF 464
             IL+KP+  PR            VK   ++   L K+PK+R+G     G  +IK H FF
Sbjct: 213 QVILEKPIRIPRF---------LSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFF 263

Query: 465 KGINWALI--RSIKPPEVP 481
           + I+W L+  + + PP  P
Sbjct: 264 RSIDWDLLEKKQVTPPFKP 282

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 88.1 bits (218), Expect = 3e-19
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 36/177 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DH 148
           + LG G  G V+L +++    G  Q F+A+K + ++ + +   +    +EK +L++  +H
Sbjct: 1   KMLGKGSFGKVFLAELK----GTNQ-FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  LY  F+       VMEY  GGDL      Q   +F +  A F             
Sbjct: 56  PFLTHLYCTFQTKENLFFVMEYLNGGDLMF--HIQSCHKFDLPRATF------------- 100

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                          YAAE +  L++LH  GIVYRDLK +N+L+  DGHI ++DF +
Sbjct: 101 ---------------YAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 88.9 bits (220), Expect = 3e-19
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 44/216 (20%)

Query: 54  LYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRN---PMV 110
           L N     K +  + +  KR    + ++  + F  +R LG+G  G V L   +N   P V
Sbjct: 4   LKNLQLHKKKDSDSTKEPKR----KNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPV 59

Query: 111 GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEY 170
                  A+K  ++  +  +K++     E+ IL  ++HPF   LY  F+   Y  LV+E+
Sbjct: 60  -------AIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEF 112

Query: 171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL 230
             GG+ +   +R   KRF                 N++G             FYAA+ +L
Sbjct: 113 VIGGEFFTFLRRN--KRFP----------------NDVGC------------FYAAQIVL 142

Query: 231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
             EYL  + IVYRDLKPEN+L+ +DG I ++DF  +
Sbjct: 143 IFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFA 178

Length = 340

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 36/173 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM-LDHPF 150
           LG G  G V L +++    G  +  YA+KV+ ++ +     +     EK IL +   HPF
Sbjct: 3   LGKGSFGKVMLAELK----GTDE-VYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+       VMEY  GGDL    Q Q  ++F    +                 
Sbjct: 58  LTALHCCFQTKDRLFFVMEYVNGGDLMF--QIQRSRKFDEPRS----------------- 98

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                      RFYAAE  LAL +LH  G++YRDLK +N+L+  +GH  L+DF
Sbjct: 99  -----------RFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADF 140

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 88.2 bits (218), Expect = 4e-19
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 22/142 (15%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--------GENNEKT 405
           + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 212

Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHE 462
           L   IL+K +  PR            VK   ++   L K+PK+R+G     G  +I+ H 
Sbjct: 213 LFQVILEKQIRIPR---------SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHP 263

Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ ++W L+  + + PP  PN
Sbjct: 264 FFRNVDWDLMEQKQVVPPFKPN 285

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 86.9 bits (215), Expect = 8e-19
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK-VILTMLDHPF 150
           +G G  G V L + ++        FYA+KV+ ++ +  +K+ +    E+ V+L  L HPF
Sbjct: 3   IGKGSFGKVLLAKRKSD-----GSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+ +     V++Y  GG+L+   QR+  + F    A                 
Sbjct: 58  LVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRA----------------- 98

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                      RFYAAE   A+ YLH + I+YRDLKPEN+L+   GH++L+DF L
Sbjct: 99  -----------RFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 85.9 bits (212), Expect = 2e-18
 Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 35/174 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L  +R    G    +YAMK++ +E +  + ++     E  +L    HPFL
Sbjct: 3   LGKGTFGKVIL--VREKASGK---YYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFL 57

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
            +L   F+     C VMEY  GG+L                         FF  +     
Sbjct: 58  TSLKYSFQTKDRLCFVMEYVNGGEL-------------------------FFHLSRERVF 92

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
             D T     RFY AE + AL+YLH   IVYRDLK EN+++ +DGHI ++DF L
Sbjct: 93  SEDRT-----RFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 86.2 bits (213), Expect = 2e-18
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK-LHRADMEKVILTMLDHPF 150
           +G G  G V L + +       + FYA+KV+ ++A+  +K+  H      V+L  + HPF
Sbjct: 3   IGKGSFGKVLLARHKAE-----EKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+ +     V++Y  GG+L+   QR+                           
Sbjct: 58  LVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--------------------------- 90

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                 L    RFYAAE   AL YLH + IVYRDLKPEN+L+   GHI+L+DF L
Sbjct: 91  ---RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 36/175 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK-VILTMLDH 148
           R +G G    V L +++       +  YAMKV+ +E +   + +     EK V  T  +H
Sbjct: 1   RVIGRGSYAKVLLVELKKT-----RRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  L++ F+       V+E+  GGDL    QRQ  ++     A               
Sbjct: 56  PFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ--RKLPEEHA--------------- 98

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                        RFY+AE  LAL +LH  GI+YRDLK +NVL+  +GHI L+D+
Sbjct: 99  -------------RFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDY 140

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 85.8 bits (212), Expect = 2e-18
 Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 15/137 (10%)

Query: 353 RSKSFVGTHEYLAPEVIS----GQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +S   VGT +Y++PE++     G G +G   DWW+LGV +YEMLYG TPF  E+  +T  
Sbjct: 159 QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG 218

Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            I+  ++   FP    S   +  E  K  DLI +L+    ++R+G   G  + K+H FF+
Sbjct: 219 KIMNHEERFQFP----SHITDVSEEAK--DLIQRLICSR-ERRLGQ-NGIEDFKKHAFFE 270

Query: 466 GINWALIRSIKPPEVPN 482
           GI+W  IR+++ P +P+
Sbjct: 271 GIDWENIRNLEAPYIPD 287

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 85.0 bits (210), Expect = 3e-18
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 40/187 (21%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL--HRADMEKVI 142
           +F LL+ LG+G  G V+L  +R          YAMKV+ +  +  + K   H     +V+
Sbjct: 1   NFELLKVLGTGAYGKVFL--VRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVL 58

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKFVFFL 199
             +   PFL TL+  F+      L+++Y  GG+L+   + R+R                 
Sbjct: 59  EHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER----------------- 101

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                     F   +V +      Y+ E +LALE+LH +GI+YRD+K EN+L+  +GH++
Sbjct: 102 ----------FKEQEVQI------YSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVV 145

Query: 260 LSDFDLS 266
           L+DF LS
Sbjct: 146 LTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V  CQ+R          YA K ++++ L  RK    A +EK IL  +   F+
Sbjct: 1   LGKGGFGEVSACQMR-----ATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
            +L   F+     CLVM    GGDL          R+ I +              N GF 
Sbjct: 56  VSLAYAFQTKTDLCLVMTIMNGGDL----------RYHIYNVD----------EENPGFP 95

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                      FY A+ +  LE+LH   I+YRDLKPENVL+  DG++ +SD  L+
Sbjct: 96  EPRAC------FYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 60/178 (33%), Positives = 83/178 (46%), Gaps = 38/178 (21%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL---TMLDH 148
           +G G  G VY  Q+R          YAMKV+ ++ +  +K++     E+ IL    + + 
Sbjct: 1   IGKGTFGQVY--QVRKKDTRR---IYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDES 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PF+  L   F+      LV +Y  GG+L+   Q++   RF    AKF             
Sbjct: 56  PFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKE--GRFSEDRAKF------------- 100

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                          Y AE +LALE+LH   IVYRDLKPEN+L+   GHI L DF LS
Sbjct: 101 ---------------YIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLS 143

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT---LINILKK 412
           S  GT  Y+APEV+  QG+  AVDWW+LGV  YE L G  P++G +              
Sbjct: 158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETA 217

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            + +P    + S E        D I+KLL ++P+KR+G      ++K H +F
Sbjct: 218 DVLYP---ATWSTE------AIDAINKLLERDPQKRLGD--NLKDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 84.1 bits (208), Expect = 5e-18
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN----E 403
           E I  R    VGT  Y+APEV+  + +  + DWW LG  +YEM+ G +PF+        E
Sbjct: 156 ETIRGR----VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKRE 211

Query: 404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHE 462
           +    + +    +       S++F E  +   +  +LL K+P  R+G   +G+ E+K H 
Sbjct: 212 EVERRVKEDQEEY-------SEKFSEAAR--SICRQLLTKDPGFRLGCRGEGAEEVKAHP 262

Query: 463 FFKGINWALIRS--IKPPEVPN 482
           FF+  N+  + +  ++PP  P+
Sbjct: 263 FFRTANFKRLEAGMLEPPFCPD 284

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 83.0 bits (206), Expect = 7e-18
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 37/182 (20%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
            F +L ++G G  G VY  + R+   G      A+KV+  E+   ++K+     E  IL 
Sbjct: 1   LFEILEKIGKGGFGEVY--KARHKRTGKE---VAIKVIKLESKEKKEKIIN---EIQILK 52

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
              HP +   Y  +       +VME+C GG L             + S            
Sbjct: 53  KCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDL----------LKSTNQTLTE----- 97

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
            + + +V               E L  LEYLH  GI++RD+K  N+L+  DG + L DF 
Sbjct: 98  -SQIAYV-------------CKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFG 143

Query: 265 LS 266
           LS
Sbjct: 144 LS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 37/182 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL-HRADMEKVILT 144
           F +++ +  G  G VYL + +N         YA+KVV ++A  I K + H+   E+  L 
Sbjct: 6   FVIVKPISRGAFGKVYLGRKKNN-----SKLYAVKVV-KKADMINKNMVHQVQAERDALA 59

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
           +   PF+  LY   ++++   LVMEY  GGD+ +                    LL  + 
Sbjct: 60  LSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKS--------------------LLHIY- 98

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
               G+   ++        Y +E  LAL+YLH  GI++RDLKP+N+L+  +GHI L+DF 
Sbjct: 99  ----GYFDEEMA-----VKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFG 149

Query: 265 LS 266
           LS
Sbjct: 150 LS 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 8/128 (6%)

Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           VGT  Y+APEV++ Q +  + D+W LG  +YEM+ G +PF+G   +     + ++ L   
Sbjct: 162 VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETE 221

Query: 418 RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIRS-- 474
                 S +F E  K   +   LL K+PK+R+G  + G+ E+KRH FF+ +N+  + +  
Sbjct: 222 E---VYSAKFSEEAK--SICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGM 276

Query: 475 IKPPEVPN 482
           + PP VP+
Sbjct: 277 LDPPFVPD 284

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 61/181 (33%), Positives = 80/181 (44%), Gaps = 33/181 (18%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           FR  R LG G  G V  CQ+R          YA K ++++ +  RK    A  EK IL  
Sbjct: 2   FRQYRVLGKGGFGEVCACQVR-----ATGKMYACKKLEKKRIKKRKGESMALNEKQILEK 56

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           ++  F+ +L   +E     CLV+    GGDL          +F I            +  
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTLMNGGDL----------KFHI------------YHM 94

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
              GF            FYAAE    LE LH   IVYRDLKPEN+L+ + GHI +SD  L
Sbjct: 95  GEAGFEEGRAV------FYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGL 148

Query: 266 S 266
           +
Sbjct: 149 A 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 81.8 bits (202), Expect = 3e-17
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 16/137 (11%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF--KGENNEKTLIN-- 408
           ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF  +GE  E   +   
Sbjct: 153 KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQR 212

Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGI 467
           IL   +T+P     +SK F E          LL K+P+KR+G   G+   ++ H  F+ +
Sbjct: 213 ILNDSVTYPDKFSPASKSFCE---------ALLAKDPEKRLGFRDGNCDGLRTHPLFRDL 263

Query: 468 NWALIRS--IKPPEVPN 482
           NW  + +  + PP VP+
Sbjct: 264 NWRQLEAGMLPPPFVPD 280

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 80.6 bits (200), Expect = 4e-17
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+ VGT  YL+PE+   + +    D W+LG  LYE+     PF+GEN  +  + ILK   
Sbjct: 161 KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKG-- 218

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            +P I    S E      L++L+S LL K+P++R
Sbjct: 219 QYPPIPSQYSSE------LRNLVSSLLQKDPEER 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 81.9 bits (202), Expect = 5e-17
 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 36/177 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DH 148
           R LG G  G V L +++          YA+KV+ ++ +     +     EK IL++  +H
Sbjct: 1   RVLGKGSFGKVMLARLKES-----GRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  LY  F+       VME+  GGDL    Q+   +RF  + A               
Sbjct: 56  PFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARA--------------- 98

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                        RFYAAE   AL +LH  GI+YRDLK +NVL+  +GH  L+DF +
Sbjct: 99  -------------RFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 81.6 bits (201), Expect = 6e-17
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 15/136 (11%)

Query: 353 RSKSFVGTHEYLAPEVIS----GQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +S   VGT +Y++PE++     G+G +G   DWW+LGV +YEMLYG TPF  E+  +T  
Sbjct: 159 QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG 218

Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            I+  K+   FP    +   +  E  K  DLI +L+    + R+G   G  + K+H FF 
Sbjct: 219 KIMNHKERFQFP----AQVTDVSEDAK--DLIRRLICSR-EHRLGQ-NGIEDFKQHPFFT 270

Query: 466 GINWALIRSIKPPEVP 481
           GI+W  IR+ + P +P
Sbjct: 271 GIDWDNIRNCEAPYIP 286

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 80.8 bits (199), Expect = 1e-16
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK-VILTMLDHPF 150
           +G G  G V L + +     L    YA+KV+ ++ +  RK+      E+ V+L  + HPF
Sbjct: 3   IGKGSFGKVLLAKRK-----LDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  L+  F+ +     V+++  GG+L+   QR+  + F    A                 
Sbjct: 58  LVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRA----------------- 98

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                      RFYAAE   AL YLH + IVYRDLKPEN+L+   GH++L+DF L
Sbjct: 99  -----------RFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 80.5 bits (198), Expect = 1e-16
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V L  ++    G    +YAMK++ +E +  + ++     E  +L    HPFL
Sbjct: 3   LGKGTFGKVIL--VKEKATGR---YYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL 57

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L   F+     C VMEY  GG+L+    R+  + F    A                  
Sbjct: 58  TALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRA------------------ 97

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPENVLVREDGHIMLSDFDL 265
                     RFY AE + AL+YLH    +VYRDLK EN+++ +DGHI ++DF L
Sbjct: 98  ----------RFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 142

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 60/206 (29%)

Query: 77  AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA 136
            + R+  + F +++ +G G  G V L + ++      +  YAMK++ +  +     + R+
Sbjct: 36  TKLRMKAEDFDVIKVIGRGAFGEVQLVRHKSS-----KQVYAMKLLSKFEM-----IKRS 85

Query: 137 DM-----EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGIS 191
           D      E+ I+   +  ++  L+  F+   Y  +VMEY PGGDL               
Sbjct: 86  DSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDL--------------- 130

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNY-------RFYAAETLLALEYLHMMGIVYRD 244
                                  V L  NY       RFY AE +LAL+ +H MG ++RD
Sbjct: 131 -----------------------VNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRD 167

Query: 245 LKPENVLVREDGHIMLSDFDLSFKCD 270
           +KP+N+L+ + GH+ L+DF    K D
Sbjct: 168 VKPDNMLLDKSGHLKLADFGTCMKMD 193

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 80.0 bits (197), Expect = 1e-16
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 24/135 (17%)

Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT+ Y+APE++  + +   VDW+ +G  +YEM+ G TPFK ++ EK     LK+      
Sbjct: 156 GTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFK-DHKEKVAKEELKR------ 208

Query: 419 IGVSSSKEFEEVVKLQ---------DLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
                 +  E+ VK +         D+    L K P+ R+GS + + + ++HEFFK IN+
Sbjct: 209 ------RTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINF 262

Query: 470 ALIRS--IKPPEVPN 482
             + +  I PP VP+
Sbjct: 263 PRLEAGLIPPPFVPD 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 62/183 (33%), Positives = 79/183 (43%), Gaps = 37/183 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           FR  R LG G  G V  CQ+R          YA K ++++ +  RK    A  EK IL  
Sbjct: 2   FRHYRVLGKGGFGEVCACQVR-----ATGKMYACKKLEKKRIKKRKGEAMALNEKRILEK 56

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           ++  F+ +L   +E     CLV+    GGDL                         F  Y
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTIMNGGDLK------------------------FHIY 92

Query: 206 N--NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           N  N GF            FYAAE    LE L    IVYRDLKPEN+L+ + GHI +SD 
Sbjct: 93  NMGNPGFDEQRAI------FYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDL 146

Query: 264 DLS 266
            L+
Sbjct: 147 GLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 80.8 bits (199), Expect = 1e-16
 Identities = 54/138 (39%), Positives = 73/138 (52%), Gaps = 17/138 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           R  + VGT +Y++PEV+  QG    +G   DWW++GVFLYEML G TPF  ++   T   
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 258

Query: 409 IL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
           I+  K  LTFP     S +        ++LI   L  + + R+G   G  EIKRH FFK 
Sbjct: 259 IMNHKNSLTFPDDNDISKEA-------KNLICAFLT-DREVRLGR-NGVEEIKRHLFFKN 309

Query: 467 INWAL--IRSIKPPEVPN 482
             WA   +R    P VP+
Sbjct: 310 DQWAWETLRDTVAPVVPD 327

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 80.8 bits (199), Expect = 2e-16
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 35/180 (19%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  ++ LG G  G V  C  R          YAMK + ++ + +R ++     E+ IL  
Sbjct: 3   FVKIKTLGIGAFGEV--CLARKVDTK---ALYAMKTLRKKDVLLRNQVAHVKAERDILAE 57

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
            D+ ++  LY  F+       VM+Y PGGD+ +   R                       
Sbjct: 58  ADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIR----------------------- 94

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
             +G    D+      RFY AE   A+E +H MG ++RD+KP+N+L+  DGHI L+DF L
Sbjct: 95  --MGIFPEDLA-----RFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 80.6 bits (197), Expect = 2e-16
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 37/184 (20%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
            +R+LR+LG G  G VYL + R           A+KV+ ++  +  K++ R   E  IL 
Sbjct: 1   SYRILRKLGEGSFGEVYLARDRKL--------VALKVLAKKLESKSKEVERFLREIQILA 52

Query: 145 MLDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
            L+HP  +  LY  F+      LVMEY  GG L     ++ G++  +S ++         
Sbjct: 53  SLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLE-DLLKKIGRKGPLSESEA-------- 103

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH-IMLSD 262
                              F  A+ L ALEYLH  GI++RD+KPEN+L+  DG  + L D
Sbjct: 104 ------------------LFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLID 145

Query: 263 FDLS 266
           F L+
Sbjct: 146 FGLA 149

Length = 384

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 35/174 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           +G G  G V   + R+      Q  YA+K + +  +  R ++     E+ +L  ++ PF+
Sbjct: 1   IGKGSFGKVMQVRKRDT-----QRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L   F++     LV+ +  GG+L+   QR+   RF +S A                  
Sbjct: 56  VPLKFSFQSPEKLYLVLAFINGGELFHHLQRE--GRFDLSRA------------------ 95

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                     RFY AE L ALE LH   ++YRDLKPEN+L+   GHI L DF L
Sbjct: 96  ----------RFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGL 139

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 78.9 bits (194), Expect = 4e-16
 Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 36/177 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-H 148
           R +G G    V L +++          YAMKVV +E +   + +     EK +      +
Sbjct: 1   RVIGRGSYAKVLLVRLKKN-----DQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSN 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  L++ F+ +    LV+EY  GGDL    QRQ                        L
Sbjct: 56  PFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ----------------------RKL 93

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
              H         RFYAAE  +AL +LH  GI+YRDLK +NVL+  DGHI L+D+ +
Sbjct: 94  PEEHA--------RFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 78.1 bits (192), Expect = 5e-16
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 33/175 (18%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G V   Q++N         YA K +D++ L  +     A +EK IL  ++ PF+
Sbjct: 1   LGKGGFGEVCAVQVKNT-----GKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFI 55

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
             L   FE+  + CLVM    GGDL                 K+  +        N+G  
Sbjct: 56  VNLAYAFESKTHLCLVMSLMNGGDL-----------------KYHIY--------NVGER 90

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
             ++        Y+A+    + +LH M IVYRD+KPENVL+ + G+  LSD  L+
Sbjct: 91  GLEMERVI---HYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 78.1 bits (192), Expect = 5e-16
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 42/187 (22%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DH 148
           +G G  G VY C  R    G     YAMK +D++ + +++    A  E+++L+++   D 
Sbjct: 2   IGRGGFGEVYGC--RKADTGK---MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDC 56

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDL-YAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           PF+  +   F        +++   GGDL Y   Q       G+ S               
Sbjct: 57  PFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH------GVFSEA------------- 97

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSF 267
                         RFYAAE +L LE++H   +VYRDLKP N+L+ E GH+ +SD  L+ 
Sbjct: 98  ------------EMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA- 144

Query: 268 KCDVVPK 274
            CD   K
Sbjct: 145 -CDFSKK 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 36/177 (20%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DH 148
           R +G G    V L +++       +  YAMKVV +E +   + +     EK +     +H
Sbjct: 1   RVIGRGSYAKVLLVRLKKT-----ERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PFL  L++ F+       V+EY  GGDL    QRQ                        L
Sbjct: 56  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ----------------------RKL 93

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
              H         RFY+AE  LAL YLH  GI+YRDLK +NVL+  +GHI L+D+ +
Sbjct: 94  PEEHA--------RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 77.7 bits (191), Expect = 7e-16
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 40/186 (21%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DH 148
           +G G  G VY C  R    G     YAMK +D++ + +++    A  E+++L+++   D 
Sbjct: 2   IGRGGFGEVYGC--RKADTGK---MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDC 56

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           PF+  +   F      C +++   GGDL+    +      G+ S K              
Sbjct: 57  PFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH-----GVFSEK-------------- 97

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFK 268
                        RFYA E +L LE++H   +VYRDLKP N+L+ E GH+ +SD  L+  
Sbjct: 98  -----------EMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA-- 144

Query: 269 CDVVPK 274
           CD   K
Sbjct: 145 CDFSKK 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 78.1 bits (192), Expect = 8e-16
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 36/175 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPF 150
           LG G  G V L +++         ++A+K + ++ + I   +    +EK +L +  ++PF
Sbjct: 3   LGKGSFGKVLLAELKGK-----GEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPF 57

Query: 151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGF 210
           L  LY  F+   +   VME+  GGDL    Q +   RF +  A F               
Sbjct: 58  LTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK--GRFDLYRATF--------------- 100

Query: 211 VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                        YAAE +  L++LH  GI+YRDLK +NV++  DGHI ++DF +
Sbjct: 101 -------------YAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 77.4 bits (190), Expect = 8e-16
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 10/153 (6%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 131 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLL 190

Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+ ++  K    I +  LT   + V     F    +L+ L+  LL ++  KR+G 
Sbjct: 191 RGHSPFR-QHKTKDKHEIDRMTLT---VNVELPDSFSP--ELKSLLEGLLQRDVSKRLGC 244

Query: 452 L-KGSVEIKRHEFFKGINW--ALIRSIKPPEVP 481
           L +G+ E+K H FFKGI+W    ++   PP +P
Sbjct: 245 LGRGAQEVKEHVFFKGIDWQQVYLQKYPPPLIP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 78.5 bits (193), Expect = 8e-16
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 52/207 (25%)

Query: 71  MKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR 130
           ++++R+ Q +   + + +++ +G G  G V L + ++      Q  YAMK++ +  +  R
Sbjct: 32  VRKIRKLQMKA--EDYDVVKVIGRGAFGEVQLVRHKSS-----QKVYAMKLLSKFEMIKR 84

Query: 131 KKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGI 190
                   E+ I+   + P++  L+  F+   Y  +VMEY PGGDL              
Sbjct: 85  SDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDL-------------- 130

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNY-------RFYAAETLLALEYLHMMGIVYR 243
                                   V L  NY       +FY AE +LAL+ +H MG+++R
Sbjct: 131 ------------------------VNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHR 166

Query: 244 DLKPENVLVREDGHIMLSDFDLSFKCD 270
           D+KP+N+L+ + GH+ L+DF    K D
Sbjct: 167 DVKPDNMLLDKHGHLKLADFGTCMKMD 193

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P     +  VGT  Y+APEVI+ + +  + DWW LG  +YEM+ G +PF+ +  E+    
Sbjct: 153 PEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFR-KRKER---- 207

Query: 409 ILKKPLTFPRIGVSS---SKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFF 464
            +K+     R+       S++F E  K   +   LL KNPK+R+G    G+  +K+H  F
Sbjct: 208 -VKREEVDRRVKEDQEEYSEKFSEDAK--SICRMLLTKNPKERLGCRGNGAAGVKQHPIF 264

Query: 465 KGINWALIRS--IKPPEVPN 482
           K IN+  + +  ++PP  P+
Sbjct: 265 KNINFKRLEANMLEPPFCPD 284

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 358 VGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           VGTH Y+APEV+  G  + S+ DW++LG  L+++L G +PF+            K     
Sbjct: 156 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--------KDKHEI 207

Query: 417 PRIGVSSSKEF--EEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI- 472
            R+ ++ + E       +L+ L+  LL ++  +R+G L +G+ E+K H FF+ ++W ++ 
Sbjct: 208 DRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVF 267

Query: 473 -RSIKPPEVP 481
            +   PP +P
Sbjct: 268 LQKYPPPLIP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 77.0 bits (189), Expect = 3e-15
 Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 17/137 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           R  + VGT +Y++PEV+  QG    +G   DWW++GVFL+EML G TPF  ++   T   
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSK 258

Query: 409 IL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
           I+  K  L FP       ++ E     ++LI   L  + + R+G   G  EIK+H FFK 
Sbjct: 259 IMDHKNSLNFP-------EDVEISKHAKNLICAFLT-DREVRLGR-NGVEEIKQHPFFKN 309

Query: 467 --INWALIRSIKPPEVP 481
              NW  IR    P VP
Sbjct: 310 DQWNWDNIRETAAPVVP 326

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
             + VGT  ++APEVI+G+ +    D W+LG+   E+  G  P+      K L  I    
Sbjct: 154 RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNG 213

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
               R     S EF      +D + K L KNP+KR  +     ++ +H F
Sbjct: 214 PPGLRNPEKWSDEF------KDFLKKCLQKNPEKRPTAE----QLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 77.1 bits (188), Expect = 4e-15
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHG---SAVDWWTLGVFLYEMLYGTTPFKGENN--- 402
            I A   + VGT  Y+APEV+ G       S+ D W+LG+ LYE+L G  PF+GE N   
Sbjct: 160 SIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSA 219

Query: 403 -EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKR 460
             +TL  IL+ P       +S S          DL+ KLL K+PK R+ S    S ++  
Sbjct: 220 TSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLA 279

Query: 461 HEFFKGINWALIRSIKPPEVPNNDLYCKIKKKV 493
           H   K  + + +            L   ++  +
Sbjct: 280 HLKLKESDLSDLLKPDDSAPLRLSLPPSLEALI 312

Length = 384

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 75.6 bits (186), Expect = 7e-15
 Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 36/179 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L  LG G  G V L + +          YA+K++ ++ +     +    +EK +L +
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGT-----DELYAIKILKKDVIIQDDDVECTMVEKRVLAL 56

Query: 146 LDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
              P FL  L++ F+       VMEY  GGDL    Q Q GK F    A F         
Sbjct: 57  PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQ-QVGK-FKEPHAVF--------- 105

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                              YAAE  + L +LH  GI+YRDLK +NV++  +GHI ++DF
Sbjct: 106 -------------------YAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADF 145

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 50/196 (25%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           R+  + + +++ +G G  G V L + ++      +  YAMK++ +  +  R        E
Sbjct: 39  RMKAEDYEVVKVIGRGAFGEVQLVRHKST-----RKVYAMKLLSKFEMIKRSDSAFFWEE 93

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           + I+   + P++  L+  F+   Y  +VMEY PGGDL                       
Sbjct: 94  RDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDL----------------------- 130

Query: 200 LFFFFYNNLGFVHTDVTLFFNY-------RFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
                          V L  NY       RFY AE +LAL+ +H MG ++RD+KP+N+L+
Sbjct: 131 ---------------VNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLL 175

Query: 253 REDGHIMLSDFDLSFK 268
            + GH+ L+DF    K
Sbjct: 176 DKSGHLKLADFGTCMK 191

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 34/180 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F +L+ +G G  G V + +++N         YAMK++++  +  R +      E+ +L
Sbjct: 1   DDFEILKVIGRGAFGEVAVVKMKNT-----GQVYAMKILNKWEMLKRAETACFREERDVL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D  ++  L+  F+  +   LVM+Y  GGDL     +    R     A          
Sbjct: 56  VNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMA---------- 104

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                             RFY AE +LA++ +H +G V+RD+KP+NVL+ ++GHI L+DF
Sbjct: 105 ------------------RFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADF 146

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 44/187 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMK---VVDREALAIRKKLHRADMEK 140
                ++ LG G  G VY  + +          YA+K   V   E    RK+L   +++ 
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHK-----PTGKIYALKKIHVDGDEE--FRKQL-LRELKT 52

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           +     + P++   Y  F       +V+EY  GG L    ++       I          
Sbjct: 53  LRSC--ESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVG----KIPE-------- 98

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIM 259
                  L ++             A + L  L+YLH    I++RD+KP N+L+   G + 
Sbjct: 99  -----PVLAYI-------------ARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVK 140

Query: 260 LSDFDLS 266
           ++DF +S
Sbjct: 141 IADFGIS 147

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 42/183 (22%), Positives = 63/183 (34%), Gaps = 36/183 (19%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
             L ++LG G  G VY            +   A+K +   A     +  R +  +    M
Sbjct: 1   LELGKKLGEGAFGEVYKG-TLKGDGEGTETKVAVKTLKEGA----SEEEREEFLEEASIM 55

Query: 146 --LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L HP +  L           +V EY PGGDL    ++   K   ++    +       
Sbjct: 56  KKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEK---LTLKDLLQM----- 107

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                A +    +EYL     V+RDL   N LV E+  + +SDF
Sbjct: 108 ---------------------ALQIAKGMEYLESKNFVHRDLAARNCLVTENLVVKISDF 146

Query: 264 DLS 266
            LS
Sbjct: 147 GLS 149

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 71.0 bits (175), Expect = 8e-14
 Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 33/181 (18%)

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTM 145
            L ++LG G  G VY   ++       +   A+K +  +A     ++  R   E  I+  
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGK-GDGKEVEVAVKTLKEDASEQQIEEFLR---EARIMRK 57

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           LDHP +  L           +VMEY PGGDL    ++   K   +S +  + F L     
Sbjct: 58  LDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKE--LSLSDLLSFAL----- 110

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                    +          A     +EYL     ++RDL   N LV E+  + +SDF L
Sbjct: 111 --------QI----------AR---GMEYLESKNFIHRDLAARNCLVGENLVVKISDFGL 149

Query: 266 S 266
           S
Sbjct: 150 S 150

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 72.0 bits (176), Expect = 9e-14
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 34/185 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F +++ +G G  G V + ++++      +  YAMK++++  +  R +      E+ +L
Sbjct: 1   DDFEIIKVIGRGAFGEVAVVKMKHT-----ERIYAMKILNKWEMLKRAETACFREERNVL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D  ++ TL+  F+  +Y  LVM+Y  GGDL                       L   
Sbjct: 56  VNGDCQWITTLHYAFQDENYLYLVMDYYVGGDL---------------------LTLLSK 94

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           F + L     D+      RFY AE +LA+  +H +  V+RD+KP+NVL+  +GHI L+DF
Sbjct: 95  FEDRLP---EDMA-----RFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADF 146

Query: 264 DLSFK 268
               K
Sbjct: 147 GSCLK 151

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 71.2 bits (174), Expect = 1e-13
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
           DH    + D    V  P     K  VGT  Y+APEV+  + +  + DWW LG  LYEM+ 
Sbjct: 137 DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 196

Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL 452
           G +PF+     K  I   +       +    S++F      + L   LL K+PK+R+G  
Sbjct: 197 GQSPFQ---QRKKKIKREEVERLVKEVQEEYSEKFSP--DARSLCKMLLCKDPKERLGCQ 251

Query: 453 -KGSVEIKRHEFFKGINWALIRS--IKPPEVPN 482
             G+ E+K H  FK IN+  + +  ++PP  P+
Sbjct: 252 GGGAREVKEHPLFKQINFKRLEAGMLEPPFKPD 284

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 34/174 (19%)

Query: 332 GDHHDQELLDDPEVVAEPINAR--------------------SKSFVGTHEYLAPEVISG 371
           GDH  Q+ +D      +P N R                    + S VGT  Y+APEV+  
Sbjct: 163 GDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLR 222

Query: 372 QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF---PRIGVSSSKEFE 428
            G+    DWW++GV LYEML G  PF  +   +T + ++    +    P+  +S      
Sbjct: 223 TGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSP----- 277

Query: 429 EVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL-IRSIKPPEVP 481
              +  DLI K L + P+ R+G   G+ EIK H FFK I+++  +R    P +P
Sbjct: 278 ---EASDLIIK-LCRGPEDRLGK-NGADEIKAHPFFKTIDFSSDLRQQSAPYIP 326

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 16/111 (14%)

Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE----KTLINILKKPL 414
           GT +Y +PE I G  +  + DWW +GV  YE+L G  PFK + +E    ++L+   +K L
Sbjct: 168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKL 227

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            F +  VS            D +  +L  N   R+ +     EI +H F K
Sbjct: 228 PFIKN-VSK--------NANDFVQSMLKYNINYRLTNYN---EIIKHPFLK 266

Length = 267

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 70.0 bits (171), Expect = 4e-13
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L  LG G  G V L + +          YA+K++ ++ +     +    +EK +L +
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGT-----DELYAIKILKKDVVIQDDDVECTMVEKRVLAL 56

Query: 146 LDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
            D P FL  L++ F+       VMEY  GGDL    Q Q GK F    A           
Sbjct: 57  QDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQ-QVGK-FKEPQAV---------- 104

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
                             FYAAE  + L +LH  GI+YRDLK +NV++  +GHI ++DF 
Sbjct: 105 ------------------FYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFG 146

Query: 265 L 265
           +
Sbjct: 147 M 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTM 145
            L ++LG G  G VY  +++    G  +   A+K +  +A     ++  R   E  I+  
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGK-GGKKKVEVAVKTLKEDASEQQIEEFLR---EARIMRK 57

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           LDHP +  L           +VMEY  GGDL +  ++   K   +S +  + F L     
Sbjct: 58  LDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPK---LSLSDLLSFAL----- 109

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                    +          A     +EYL     ++RDL   N LV E+  + +SDF L
Sbjct: 110 --------QI----------AR---GMEYLESKNFIHRDLAARNCLVGENLVVKISDFGL 148

Query: 266 S 266
           S
Sbjct: 149 S 149

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 42/189 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            H + +++LG G  G V LC+             A+K ++       ++ HR+D E+ I 
Sbjct: 4   RHLKFIKQLGEGHFGKVELCRYDPLGDN-TGEQVAVKSLNHSG----EEQHRSDFEREIE 58

Query: 144 TM--LDHPFLPTL----YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
            +  LDH  +             S    L+MEY P G L   R      R  I+  + + 
Sbjct: 59  ILRTLDHENIVKYKGVCEKPGGRSL--RLIMEYLPSGSL---RDYLQRHRDQINLKRLLL 113

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
           F                          +++    ++YL     ++RDL   N+LV  +  
Sbjct: 114 F--------------------------SSQICKGMDYLGSQRYIHRDLAARNILVESEDL 147

Query: 258 IMLSDFDLS 266
           + +SDF L+
Sbjct: 148 VKISDFGLA 156

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            S VGT  ++APEVI  + +G  VD W+LG+   EM  G  P+  E   + L  I  K +
Sbjct: 174 NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGI 233

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              +     S EF      +D ++K LVK+P+KR      + E+ +H F K
Sbjct: 234 PPLKNPEKWSPEF------KDFLNKCLVKDPEKR----PSAEELLQHPFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 67.4 bits (164), Expect = 4e-12
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 34/185 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F +L+ +G G  G V + +++N         +AMK++++  +  R +      E+ +L
Sbjct: 1   EDFEILKVIGRGAFGEVAVVKLKNA-----DKVFAMKILNKWEMLKRAETACFREERDVL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D+ ++ TL+  F+  +   LVM+Y  GGDL                       L   
Sbjct: 56  VNGDNQWITTLHYAFQDENNLYLVMDYYVGGDL---------------------LTLLSK 94

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           F + L     D+      RFY AE ++A++ +H +  V+RD+KP+N+L+  +GHI L+DF
Sbjct: 95  FEDRLP---EDMA-----RFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADF 146

Query: 264 DLSFK 268
               K
Sbjct: 147 GSCLK 151

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 47/180 (26%), Positives = 65/180 (36%), Gaps = 44/180 (24%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQ-CFYAMKVV--DREALAIRKKLHRADMEKVILT 144
              ++G G  G VY        V L      A+K +          K++     E  +L 
Sbjct: 4   RGNKIGGGTFGKVYTA------VNLDTGELMAVKEIRIQDNDPKTIKEIAD---EMKVLE 54

Query: 145 MLDHPFLPTLYA-EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           +L HP L   Y  E        + MEYC GG L      + G+   I     +       
Sbjct: 55  LLKHPNLVKYYGVEVHREKV-YIFMEYCSGGTL--EELLEHGR---ILDEHVI------- 101

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                             R Y  + L  L YLH  GIV+RD+KP N+ +  +G I L DF
Sbjct: 102 ------------------RVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDF 143

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 46/189 (24%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV--- 141
           +++L   +G G  G VY  +  N   G    F A+K +  E      K+    ++ +   
Sbjct: 1   NYQLGDLIGRGAFGVVY--KGLNLETGD---FVAIKQISLE------KIKEEALKSIMQE 49

Query: 142 --ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             +L  L HP +       E S    +++EY   G L     RQ  K+FG          
Sbjct: 50  IDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSL-----RQIIKKFG---------- 94

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                     F  + V +      Y  + L  L YLH  G+++RD+K  N+L  +DG + 
Sbjct: 95  ---------PFPESLVAV------YVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVK 139

Query: 260 LSDFDLSFK 268
           L+DF ++ K
Sbjct: 140 LADFGVATK 148

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 34/182 (18%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F++L++LG G  G+VY  + R         FYA+K VD  +++ +K+   A  E  IL  
Sbjct: 2   FKVLKKLGKGSYGSVYKVK-RLS----DNQFYALKEVDLGSMS-QKEREDAVNEIRILAS 55

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVFFLLFFFF 204
           ++HP + +    F   +  C+VMEY P GDL  A  +R+  ++       +  F+     
Sbjct: 56  VNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI----- 110

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
                                 + L  L+ LH   I++RDLK  N+L+  +  + + D  
Sbjct: 111 ----------------------QLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLG 148

Query: 265 LS 266
           +S
Sbjct: 149 IS 150

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 66.6 bits (162), Expect = 6e-12
 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L  LG G  G V L + +    G  +  YA+K++ ++ +     +    +EK +L +
Sbjct: 2   FNFLMVLGKGSFGKVMLAERK----GTDE-LYAIKILKKDVVIQDDDVECTMVEKRVLAL 56

Query: 146 LDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
              P FL  L++ F+       VMEY  GGDL    Q Q   RF    A F         
Sbjct: 57  SGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYQIQQVGRFKEPHAVF--------- 105

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD 264
                              YAAE  + L +LH  GI+YRDLK +NV++  +GHI ++DF 
Sbjct: 106 -------------------YAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFG 146

Query: 265 L 265
           +
Sbjct: 147 M 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 37/186 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKVI 142
           +    L RLG G  G+V  C+++N         +A+K +       ++K++ R   E  I
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLKNT-----GMIFALKTITTDPNPDLQKQILR---ELEI 52

Query: 143 LTMLDHPFLPTLYAEFEASHYSCL--VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
                 P++   Y  F     S +   MEYC GG L +  ++   KR G    K      
Sbjct: 53  NKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVK-KRGGRIGEKV----- 106

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                  LG +             A   L  L YLH   I++RD+KP N+L+   G + L
Sbjct: 107 -------LGKI-------------AESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKL 146

Query: 261 SDFDLS 266
            DF +S
Sbjct: 147 CDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+ +GT  Y+APEV  G+ +    D W+LG  LYEM     PF+  + +     + +   
Sbjct: 159 KTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRG-- 216

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            +P I    S++      LQ+ I  +L   PK R
Sbjct: 217 KYPPIPPIYSQD------LQNFIRSMLQVKPKLR 244

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R KS VGT  ++APEVIS   +G+ VD W+LG+ + EM+ G  P+  E   + +  I   
Sbjct: 171 RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDN 230

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
                +     S        L+  + ++LV++P +R      + E+  H F  
Sbjct: 231 LPPKLKNLHKVSPR------LRSFLDRMLVRDPAQR----ATAAELLNHPFLA 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 43/187 (22%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
            + + L++R+GSG  G+VY  + R+   G       +K+   +   I ++      E  +
Sbjct: 2   QEDYELIQRIGSGTYGDVY--KARDIATGELVAIKVIKLEPGDDFEIIQQ------EISM 53

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFL 199
           L    HP +   +  +       +VMEYC GG   D+Y    R P     I+        
Sbjct: 54  LKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQ-VTRGPLSELQIA-------- 104

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                  +   ETL  L YLH  G ++RD+K  N+L+ EDG + 
Sbjct: 105 -----------------------YVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVK 141

Query: 260 LSDFDLS 266
           L+DF +S
Sbjct: 142 LADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)

Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI-- 407
           +N+ +K+FVGT  Y+APE I G  +    D W+LG+ L E+  G  P+  EN+    I  
Sbjct: 152 VNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFE 211

Query: 408 ---NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
               I+ +P   PR+    S +F      QD ++  L+K+P++R  S K   E+  H F 
Sbjct: 212 LLQYIVNEPP--PRL---PSGKFSP--DFQDFVNLCLIKDPRER-PSYK---ELLEHPFI 260

Query: 465 KG 466
           K 
Sbjct: 261 KK 262

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 62.6 bits (153), Expect = 6e-11
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           +  +FVGT  ++APEVI   G+    D W+LG+   E+  G  P    +  + L  I K 
Sbjct: 154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKN 213

Query: 413 PLTFPRI-GVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               P + G   SK F      +D +S  L K+PK+R
Sbjct: 214 NP--PSLEGNKFSKPF------KDFVSLCLNKDPKER 242

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 45/206 (21%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           + +++++G G  G +YL + +        C   +K +D   + +++K   +  E ++L  
Sbjct: 2   YEIIKKIGEGSFGKIYLAKAK---SDSEHC--VIKEIDLTKMPVKEK-EASKKEVILLAK 55

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           + HP + T +A F+ +    +VMEYC GGDL     RQ G  F          +L +F  
Sbjct: 56  MKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQ------ILSWFVQ 109

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM-LSDF- 263
            +LG                      L+++H   I++RD+K +N+ + ++G +  L DF 
Sbjct: 110 ISLG----------------------LKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFG 147

Query: 264 ---------DLSFKCDVVPKLLRPKL 280
                    +L++ C   P  L P++
Sbjct: 148 IARQLNDSMELAYTCVGTPYYLSPEI 173

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 42/187 (22%)

Query: 84  DHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
           D + L+  +G G    VY  +C   N  V       A+K +D E           ++ K 
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEKV-------AIKRIDLEKCQTSVD----ELRKE 49

Query: 142 ILTM--LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           +  M   +HP +   Y  F       LVM Y  GG L     +    R G+  A     L
Sbjct: 50  VQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDI-MKSSYPRGGLDEAIIATVL 108

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                      E L  LEYLH  G ++RD+K  N+L+ EDG + 
Sbjct: 109 --------------------------KEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVK 142

Query: 260 LSDFDLS 266
           ++DF +S
Sbjct: 143 IADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 49/188 (26%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DREALAIRKKLHRADMEKVIL 143
           F +L +LG G  G+VY     +   G      A+KVV  + +   I K       E  IL
Sbjct: 5   FDILEKLGEGSYGSVYKA--IHKETGQV---VAIKVVPVEEDLQEIIK-------EISIL 52

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFLL 200
              D P++   Y  +  +    +VMEYC  G   D+     +       ++  +    L 
Sbjct: 53  KQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKT------LTEEEIAAIL- 105

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                     +TL  LEYLH    ++RD+K  N+L+ E+G   L
Sbjct: 106 -------------------------YQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKL 140

Query: 261 SDFDLSFK 268
           +DF +S +
Sbjct: 141 ADFGVSGQ 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 41/197 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F +L ++G G  G V+  ++           YAMK +D   +  R++    D E  +L  
Sbjct: 2   FEILNKIGKGSFGVVF--KVVRKADKR---VYAMKQIDLSKMNRREREEAID-EARVLAK 55

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           LD  ++   Y  F       +VMEY   GDL+   + Q G+                   
Sbjct: 56  LDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLP---------------E 100

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
           + +            +RF+  + LL L +LH   I++RD+K  N+ +    ++ + D   
Sbjct: 101 DQV------------WRFF-IQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLG- 146

Query: 266 SFKCDVVPKLLRPKLSF 282
                 V KLL    +F
Sbjct: 147 ------VAKLLSDNTNF 157

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K++VGT  Y++PE ++   +    D W+LG  +YE+   + PF   N  +    I +   
Sbjct: 168 KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGK- 226

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            F RI    S E      L ++I  +L  +P KR
Sbjct: 227 -FRRIPYRYSSE------LNEVIKSMLNVDPDKR 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + S  GT  ++APEVI G+ +G A D W+LG  + EM  G  P+    N    +  +   
Sbjct: 160 TGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSS 219

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
              P I    S+E       +D + K L ++PKKR      + E+ +H F 
Sbjct: 220 GEPPEIPEHLSEE------AKDFLRKCLRRDPKKR----PTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 45/187 (24%), Positives = 68/187 (36%), Gaps = 37/187 (19%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTMLDH 148
           ++LG G  G VY  +++       +   A+K +  +A    RK   +   E  ++  L H
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEV--AVKTLKEDASEEERKDFLK---EARVMKKLGH 55

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFG---ISSAKFVFFLLFFF 203
           P +  L           LV+EY  GGDL  Y  + R          +S    + F +   
Sbjct: 56  PNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAI--- 112

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                      +                +EYL     V+RDL   N LV ED  + +SDF
Sbjct: 113 ----------QIA-------------KGMEYLASKKFVHRDLAARNCLVGEDLVVKISDF 149

Query: 264 DLSFKCD 270
            LS    
Sbjct: 150 GLSRDVY 156

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           KS  GT  +++PEVISG+G+G   D W++G  + EML    P+        +  I  +P 
Sbjct: 165 KSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQP- 223

Query: 415 TFPR--IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           T P+    VS           ++ + +  V+N KKR  +     E+ RH F 
Sbjct: 224 TNPQLPSHVSPD--------ARNFLRRTFVENAKKRPSAE----ELLRHFFV 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 39/185 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
           D    L  LG+G+ G V     R           A+K +  E   AI+K++     E  I
Sbjct: 1   DDLEYLGELGAGNSGVVSKVLHRPT-----GKIMAVKTIRLEINEAIQKQIL---RELDI 52

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L   + P++   Y  F  +    + MEY  GG L    +   G R        +      
Sbjct: 53  LHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQG-RIPERILGKIAV---- 107

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLS 261
                                     L  L YLH    I++RD+KP N+LV   G I L 
Sbjct: 108 ------------------------AVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLC 143

Query: 262 DFDLS 266
           DF +S
Sbjct: 144 DFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 64/193 (33%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-KLHRADMEK-- 140
           + ++ L ++G G  G VY                A      + +AI+K +L + + E   
Sbjct: 19  ELYKNLEKIGEGASGEVYK---------------ATDRATGKEVAIKKMRLRKQNKELII 63

Query: 141 ---VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
              +I+    HP +   Y  +       +VMEY  GG L                     
Sbjct: 64  NEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSL--------------------- 102

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYR-------FYAAETLLALEYLHMMGIVYRDLKPENV 250
                          TD+      R       +   E L  LEYLH   +++RD+K +N+
Sbjct: 103 ---------------TDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNI 147

Query: 251 LVREDGHIMLSDF 263
           L+ +DG + L+DF
Sbjct: 148 LLSKDGSVKLADF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 16/117 (13%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A+  + +GT  ++APEVI   G+ +  D W+LG+   EM  G  P+   +  + +  I 
Sbjct: 153 MAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIP 212

Query: 411 KKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            KP   L+ P      S EF       D + K LVK+P++R      ++++ +H F 
Sbjct: 213 NKPPPTLSDPE---KWSPEF------NDFVKKCLVKDPEER----PSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 16/130 (12%)

Query: 339 LLDDPEVVAEPINARSK--SFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTT 395
            L D  V A      SK  +FVGT  ++APEVI+ G+ + +  D W+LG+ +YEM  G  
Sbjct: 141 KLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNP 200

Query: 396 PFKGENNEKTLINILK-KPLTFPRI-GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-- 451
           P+   +  + ++ I K KP   PR+     SK       L++ ++  L + PK+R+ +  
Sbjct: 201 PYSDVDAFRAMMLIPKSKP---PRLEDNGYSKL------LREFVAACLDEEPKERLSAEE 251

Query: 452 LKGSVEIKRH 461
           L  S  IK H
Sbjct: 252 LLKSKWIKAH 261

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 51/189 (26%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNP--MVGLPQCFYAMKVVDREALAIRKKLHRAD--ME-- 139
           ++++++LG G  G+VYL + +    +V       A+K        ++KK +  +  M   
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELV-------AIKK-------MKKKFYSWEECMNLR 46

Query: 140 --KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
             K +  + +HP +  L   F  +     V EY   G+LY   + + GK F  S  + + 
Sbjct: 47  EVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYME-GNLYQLMKDRKGKPFSESVIRSII 105

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
           +                            + L  L ++H  G  +RDLKPEN+LV     
Sbjct: 106 Y----------------------------QILQGLAHIHKHGFFHRDLKPENLLVSGPEV 137

Query: 258 IMLSDFDLS 266
           + ++DF L+
Sbjct: 138 VKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 64/195 (32%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK----- 140
           +  + ++G G  G VY                A      E +A+ KK+ R + EK     
Sbjct: 1   YEKIAQIGEGTYGQVY---------------KARNKKTGELVAL-KKI-RMENEKEGFPI 43

Query: 141 ------VILTMLDHPFLPTLY----AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGI 190
                  +L  L HP +  L     ++ + S Y  +V EY    DL       P  +F  
Sbjct: 44  TAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIY--MVFEYMDH-DL-TGLLDSPEVKFTE 99

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV 250
           S  K     L                            L  L+YLH  GI++RD+K  N+
Sbjct: 100 SQIKCYMKQL----------------------------LEGLQYLHSNGILHRDIKGSNI 131

Query: 251 LVREDGHIMLSDFDL 265
           L+  DG + L+DF L
Sbjct: 132 LINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 48/186 (25%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI--L 143
           F LL  +G G  G VY    +           A+KV+D E      +    D+++ I  L
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRT-----NQVVAIKVIDLEE----AEDEIEDIQQEIQFL 53

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFLL 200
           +    P++   Y  F       ++MEYC GG   DL          + G     ++ F+L
Sbjct: 54  SQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLL---------KPGKLDETYIAFIL 104

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                     E LL LEYLH  G ++RD+K  N+L+ E+G + L
Sbjct: 105 R-------------------------EVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKL 139

Query: 261 SDFDLS 266
           +DF +S
Sbjct: 140 ADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 50/188 (26%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL----HRADMEKV 141
           +++L R+G G  G V+  + R             + V  + +A+R+      ++A  E  
Sbjct: 2   YKILGRIGEGAHGIVFKAKDRE----------TGETVALKKVALRRLEGGIPNQALREIK 51

Query: 142 ILTMLDHPFLPTLYAEF-EASHYSCLVMEYCPGGDLYAA--RQRQPGKRFGISSAKFVFF 198
            L    HP++  L   F   S +  LVMEY P  DL      + +P      +  K    
Sbjct: 52  ALQACQHPYVVKLLDVFPHGSGFV-LVMEYMPS-DLSEVLRDEERP---LPEAQVKS--- 103

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                    Y    L  + Y+H  GI++RDLKP N+L+  DG +
Sbjct: 104 -------------------------YMRMLLKGVAYMHANGIMHRDLKPANLLISADGVL 138

Query: 259 MLSDFDLS 266
            ++DF L+
Sbjct: 139 KIADFGLA 146

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 39/186 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  LG G  G VY  Q +   +     F A K++  E+    ++L    +E  IL
Sbjct: 5   DIWEIIGELGDGAFGKVYKAQHKETGL-----FAAAKIIQIES---EEELEDFMVEIDIL 56

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           +   HP +  LY  +   +   +++E+C GG L +                         
Sbjct: 57  SECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSI------------------------ 92

Query: 204 FYNNLGFVHTDVTLFFNY-RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                  +  +  L     R+   + L AL +LH   +++RDLK  N+L+  DG + L+D
Sbjct: 93  ------MLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLAD 146

Query: 263 FDLSFK 268
           F +S K
Sbjct: 147 FGVSAK 152

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 51/182 (28%), Positives = 72/182 (39%), Gaps = 34/182 (18%)

Query: 92  LGSGDIGNVYLCQIRN--PMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP 149
           +G G  G VYL        M+ + Q      +  R     +  +     E   L  LDH 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 150 FLPTLYAEFEASH-YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
            +   Y  FE +  Y  + +EY PGG +  +  R  G+                 F   L
Sbjct: 69  NIVQ-YLGFETTEEYLSIFLEYVPGGSI-GSCLRTYGR-----------------FEEQL 109

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFK 268
                        RF+  + L  L YLH  GI++RDLK +N+LV  DG   +SDF +S K
Sbjct: 110 ------------VRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKK 157

Query: 269 CD 270
            D
Sbjct: 158 SD 159

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 49/185 (26%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNP-------MVGLPQCFYAMKVVDREALAIRKKLHRADM 138
           + +LR +G G  G   L Q  N         + LP+   A++   +EA            
Sbjct: 2   YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEA------------ 49

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
             V+L  + HP +      FEA  +  +VMEYC GGDL    + Q GK F   +      
Sbjct: 50  --VLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDT------ 101

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
           +L +F                       +  L ++++H   +++RD+K +N+ + ++G +
Sbjct: 102 ILQWF----------------------VQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKV 139

Query: 259 MLSDF 263
            L DF
Sbjct: 140 KLGDF 144

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 60/199 (30%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F L+  +G G  G VY  + R+   G      A+K++D             D E+ I 
Sbjct: 6   GIFELVEVIGEGTYGKVY--KARHKKTGQ---LVAIKIMD----------IIEDEEEEIK 50

Query: 144 T---ML----DHPFLPTLYAEFEASHYSC------LVMEYCPGG---DLYAARQRQPGKR 187
               +L    +HP + T Y  F   +         LVME C GG   DL     R+ GKR
Sbjct: 51  EEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDL-VKGLRKKGKR 109

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
             +      + L                           ETL  L YLH   +++RD+K 
Sbjct: 110 --LKEEWIAYIL--------------------------RETLRGLAYLHENKVIHRDIKG 141

Query: 248 ENVLVREDGHIMLSDFDLS 266
           +N+L+ ++  + L DF +S
Sbjct: 142 QNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 56.6 bits (136), Expect = 7e-09
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 37/185 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + + ++  LG G  G VY  + +N   G      A KV++ ++    ++L    +E  IL
Sbjct: 12  EVWEIIGELGDGAFGKVY--KAKNKETGA---LAAAKVIETKS---EEELEDYMVEIEIL 63

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              +HP++  L   F       +++E+CPGG + A                 +   L   
Sbjct: 64  ATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDA-----------------IMLEL--- 103

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
              + G     +      +    + L AL+YLH M I++RDLK  NVL+  DG I L+DF
Sbjct: 104 ---DRGLTEPQI------QVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADF 154

Query: 264 DLSFK 268
            +S K
Sbjct: 155 GVSAK 159

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 28/128 (21%)

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
           E VIL++L HP +   Y  F   +   + MEY  GG LY    RQ G+ F     + V +
Sbjct: 49  EIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLF---EEEMVLW 105

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
            LF                         + + A+ Y+H  GI++RD+K  N+ + + G I
Sbjct: 106 YLF-------------------------QIVSAVSYIHKAGILHRDIKTLNIFLTKAGLI 140

Query: 259 MLSDFDLS 266
            L DF +S
Sbjct: 141 KLGDFGIS 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 335 HDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT 394
             Q  L D  V  E IN+ + +FVGT  Y++PE I G  +    D W+LG+ + E+  G 
Sbjct: 140 RGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGK 199

Query: 395 TPF-------KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK 447
            PF        G+++   ++++L++ +  P   + SS  F E   L+D +   L+K+P +
Sbjct: 200 FPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSD-FPED--LRDFVDACLLKDPTE 256

Query: 448 R 448
           R
Sbjct: 257 R 257

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 45/185 (24%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM------EKVILTM 145
           +GSG  G+VYL    N   G      A+K V+  +++   K  +  M      E  +L  
Sbjct: 8   IGSGSFGSVYLGM--NASSGE---LMAVKQVELPSVSASSKDRKRSMLDALAREIALLKE 62

Query: 146 LDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
           L H   +  L +  +A H + + +EY PGG + A                    LL    
Sbjct: 63  LQHENIVQYLGSSLDADHLN-IFLEYVPGGSVAA--------------------LL---- 97

Query: 205 YNNLG-FVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
            NN G F  T V      R +  + L  L YLH  GI++RD+K  N+LV   G I +SDF
Sbjct: 98  -NNYGAFEETLV------RNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDF 150

Query: 264 DLSFK 268
            +S K
Sbjct: 151 GISKK 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 43/180 (23%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-----DREALAIRKKLHRADMEKVILTML 146
           LGSG  G+VY       +      F+A+K V      +      K+L +   E  +L+ L
Sbjct: 8   LGSGSFGSVYE-----GLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQ---EIALLSKL 59

Query: 147 DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN 206
            HP +              + +E  PGG L    ++     +G             F   
Sbjct: 60  QHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKK-----YGS------------FPEP 102

Query: 207 NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +             R Y  + LL LEYLH    V+RD+K  N+LV  +G + L+DF ++
Sbjct: 103 VI-------------RLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 355 KSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL- 410
           +S  GT  Y+APEVI+G    GHG A D W+LG  + EM  G  P+   +NE  ++  + 
Sbjct: 161 QSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVG 220

Query: 411 -KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
                  P     S        + +D + + L  +PKKR      + E+ +H F
Sbjct: 221 AGHKPPIPDSLQLSP-------EGKDFLDRCLESDPKKR----PTASELLQHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 355 KSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+FVGT  ++APEV+    G+    D W+ G+   E+  G  P+      K L+  L+  
Sbjct: 164 KTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQND 223

Query: 414 LTFPRIGV-SSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
              P +   +  K++ +  +   +IS  L K+P KR      + E+ +H+FF
Sbjct: 224 --PPSLETGADYKKYSKSFR--KMISLCLQKDPSKR----PTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 56.3 bits (137), Expect = 1e-08
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 42/137 (30%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           THE     Y APE++ G  H  +AVD W++G    EM+ G   F G++    L  I +  
Sbjct: 156 THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQI- 214

Query: 414 LTFPRIGVSSSKEFEEVVKLQ--------------------------DLISKLLVKNPKK 447
                +G  + + +  V KL                           DL+SK+L  NP K
Sbjct: 215 -----LGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAK 269

Query: 448 RIGSLKGSVEIKRHEFF 464
           RI +     E  +H +F
Sbjct: 270 RISAK----EALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           V E    +  +FVGT  Y++PE I G+ +  A D W+LG+ L E   G  PF     + +
Sbjct: 149 VLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLP-PGQPS 207

Query: 406 LINILKKPLTFPRIGVSS---SKEFEEVVKLQDLISKLLVKNPKKR 448
              +++     P   + +   S EF      +D IS  L K+PKKR
Sbjct: 208 FFELMQAICDGPPPSLPAEEFSPEF------RDFISACLQKDPKKR 247

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 333 DHHDQELLDDPEV--VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM 390
           D +D   + D  V  +       + + VGT  YL+PE+   + +    D W LGV LYE 
Sbjct: 135 DAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYEC 194

Query: 391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             G  PF   N    ++ I++    FP +    S++      L  LI + L K+ ++R
Sbjct: 195 CTGKHPFDANNQGALILKIIRG--VFPPVSQMYSQQ------LAQLIDQCLTKDYRQR 244

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 35/179 (19%)

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH 148
           +R +G G  G V+LC+ +       Q    +K +  E +  + +   A  E  +L +L H
Sbjct: 5   IRVVGRGAFGIVHLCRRKAD-----QKLVIIKQIPVEQMT-KDERLAAQNECQVLKLLSH 58

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           P +   Y  F       +VMEY PGG L    Q++        +      +L FF     
Sbjct: 59  PNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDT------ILHFF----- 107

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM-LSDFDLS 266
                             + LLAL ++H   I++RDLK +N+L+ +   ++ + DF +S
Sbjct: 108 -----------------VQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGIS 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL-KK 412
           + SF GT  YLAPE+   + +    D W+LGV LYE+L    PFKG +  + +  +L  K
Sbjct: 228 ASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGK 287

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
              FP   VSS         ++ L+  LL KNP  R
Sbjct: 288 YDPFP-CPVSSG--------MKALLDPLLSKNPALR 314

Length = 478

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 19/100 (19%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK--- 412
           S VGT  Y++PE I   G+    D W+LG  LYEM    +PF G+  +  L ++ KK   
Sbjct: 165 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD--KMNLYSLCKKIEK 222

Query: 413 ----PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               PL         +  + E  +L+DL+S+ +  +P+KR
Sbjct: 223 CDYPPL--------PADHYSE--ELRDLVSRCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
            + +KSF G+  ++APEVI+ QG +G A D W+LG  + EM  G  P+        +  I
Sbjct: 155 FSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKI 214

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            +     P I    S E       +D I K L ++P  R
Sbjct: 215 GRSK-ELPPIPDHLSDE------AKDFILKCLQRDPSLR 246

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 18/121 (14%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 226

Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 227 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR-GSAK---ELLQHQFL 273

Query: 465 K 465
           K
Sbjct: 274 K 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 54/191 (28%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH----------RAD 137
           L +RLG G  G VYL + +             K V  E L + K++           +A+
Sbjct: 4   LQQRLGKGSFGTVYLVKDK-------------KAVAEERLKVLKEIPVGELNPNETVQAN 50

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQ--RQPGKRFGISSAKF 195
            E  +L+ LDHP +   +A F      C++ EYC G DL    +  +  GK    S  + 
Sbjct: 51  QEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTL--SENQV 108

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
             + +                          + LL + Y+H   I++RDLK +N+ ++ +
Sbjct: 109 CEWFI--------------------------QLLLGVHYMHQRRILHRDLKAKNIFLKNN 142

Query: 256 GHIMLSDFDLS 266
             + + DF +S
Sbjct: 143 -LLKIGDFGVS 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 6/96 (6%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + KS VGT  ++APEVIS   +G+ VD W+LG+ + EM+ G  P+  +    + +  +K+
Sbjct: 173 KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD----SPVQAMKR 228

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               P   + ++ +   V  L+D + ++L + P++R
Sbjct: 229 LRDSPPPKLKNAHKISPV--LRDFLERMLTREPQER 262

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 54.0 bits (129), Expect = 6e-08
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 18/121 (14%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 167 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY- 225

Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H F 
Sbjct: 226 ---------LIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKR-GSAK---ELLQHPFL 272

Query: 465 K 465
           K
Sbjct: 273 K 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + L  +++LH   IV+RDLKP+N+LV  DG + ++DF L+
Sbjct: 115 QLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 28/195 (14%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK---- 140
           H     +LG G  G V+LC++ NP   LP   +   V     L +  K+ R D  K    
Sbjct: 6   HLLFKEKLGEGQFGEVHLCEVVNPQ-DLPTLQFPFNVRKGRPLLVAVKILRPDANKNARN 64

Query: 141 ------VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL---YAARQRQPGKRFGIS 191
                  IL+ L  P +  L          C++ EY   GDL    ++      +  G  
Sbjct: 65  DFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGND 124

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
           +      L     Y++L  V             A +    ++YL  +  V+RDL   N L
Sbjct: 125 AVPPAHCLP-AISYSSLLHV-------------ALQIASGMKYLSSLNFVHRDLATRNCL 170

Query: 252 VREDGHIMLSDFDLS 266
           V E+  I ++DF +S
Sbjct: 171 VGENLTIKIADFGMS 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 33/137 (24%)

Query: 357 FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE---KTLINILKK 412
           +V T  Y APE++ S   +  A+D W++G    E+L     F G +       ++ +L  
Sbjct: 166 YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGT 225

Query: 413 PL--TFPRIGVSSSKEFEEVVKLQ-------------------DLISKLLVKNPKKRIGS 451
           P       I    ++ +  +  L                    DL+ K+LV +PKKRI  
Sbjct: 226 PSEEDLKFITSEKARNY--LKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRI-- 281

Query: 452 LKGSV-EIKRHEFFKGI 467
              +  E   H +   +
Sbjct: 282 ---TADEALAHPYLAQL 295

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME------ 139
           + +L  LGSG  G VY  + +N      Q   A+K ++    A  K     D        
Sbjct: 2   YAVLEHLGSGAFGCVYKVRKKNN----GQNLLALKEINVHNPAFGKDKRERDKSIGDIVS 57

Query: 140 --KVILTMLDHPFLPTLYAEFEASHYSCLVMEY---CPGGDLYAARQRQPGKRFGISSAK 194
              +I   L HP +   Y  F  +    +VM+     P G+ + +  ++  +RF      
Sbjct: 58  EVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNS-LKEKKQRFTEERIW 116

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPENVLVR 253
            +F                             + +LAL YLH    IV+RDL P N+++ 
Sbjct: 117 NIFV----------------------------QMVLALRYLHKEKRIVHRDLTPNNIMLG 148

Query: 254 EDGHIMLSDFDLS 266
           ED  + ++DF L+
Sbjct: 149 EDDKVTITDFGLA 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 38/183 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F L++R+GSG  G+VY  + RN   G       +K+   E  A+ ++      E +++
Sbjct: 9   EDFELIQRIGSGTYGDVY--KARNVNTGELAAIKVIKLEPGEDFAVVQQ------EIIMM 60

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
               H  +   +  +       + ME+C GG L                           
Sbjct: 61  KDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQD------------------------- 95

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
            Y+  G +           + + ETL  L YLH  G ++RD+K  N+L+ ++GH+ L+DF
Sbjct: 96  IYHVTGPLSE-----SQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADF 150

Query: 264 DLS 266
            +S
Sbjct: 151 GVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + KS VGT  ++APEVIS   +G+ VD W+LG+ + EM+ G  P+  E   + +  I  +
Sbjct: 174 KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI--R 231

Query: 413 PLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
               PR+     K+  +V   L+  +  +LV+ P +R  +     E+ +H F K
Sbjct: 232 DNLPPRV-----KDSHKVSSVLRGFLDLMLVREPSQRATAQ----ELLQHPFLK 276

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 45/109 (41%)

Query: 354 SKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
            K+ VGT  Y+APEV+ G+G+     D W+LGV LYE+                      
Sbjct: 150 LKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---------------------- 187

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
                              +L+DLI K+L K+P+KR  +     EI  H
Sbjct: 188 ------------------PELKDLIRKMLQKDPEKRPSAK----EILEH 214

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 28/37 (75%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           E L+AL+Y+H +G+++RD+K  N+LV   G++ L DF
Sbjct: 109 EVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDF 145

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 20/119 (16%)

Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF-K 398
           L D  V  + +N+ +K++VGT+ Y+APE ISG+ +G   D W+LG+   E+  G  P+ +
Sbjct: 136 LCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQ 195

Query: 399 GENNEKTLINILKKPLTF---------PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            + N+ +L+     PL           P + V    +F E  K    I++ + K PK+R
Sbjct: 196 IQKNQGSLM-----PLQLLQCIVDEDPPVLPVG---QFSE--KFVHFITQCMRKQPKER 244

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R KS VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 172 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 230

Query: 413 PLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  P++     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 231 NLP-PKL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 41/187 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + + ++  LG G  G VY  Q +   V       A KV+D ++    ++L    +E  IL
Sbjct: 5   EFWEIIGELGDGAFGKVYKAQNKETGV-----LAAAKVIDTKS---EEELEDYMVEIDIL 56

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLF 201
              DHP +  L   F   +   +++E+C GG  D       +P     I           
Sbjct: 57  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQI----------- 105

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                               R    +TL AL YLH   I++RDLK  N+L   DG I L+
Sbjct: 106 --------------------RVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLA 145

Query: 262 DFDLSFK 268
           DF +S K
Sbjct: 146 DFGVSAK 152

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 38/160 (23%)

Query: 131 KKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGI 190
           K+   +  E  +L+ + HP +      FE +    +VM+YC GGDLY     Q G     
Sbjct: 41  KEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRG----- 95

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV 250
                            + F    +  +F       +  LAL+++H   I++RD+K +N+
Sbjct: 96  -----------------VLFPEDQILDWF------VQICLALKHVHDRKILHRDIKSQNI 132

Query: 251 LVREDGHIMLSDF----------DLSFKCDVVPKLLRPKL 280
            + +DG I L DF          +L+  C   P  L P++
Sbjct: 133 FLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEI 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 41/136 (30%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           THE     Y APEV+ G  H  + VD W++G    EM      F G++  + L++I    
Sbjct: 169 THEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHI---- 224

Query: 414 LTFPRIGVSSSKEFEEVVKLQD-------------------------LISKLLVKNPKKR 448
             F  +G  + + +  V KL+D                         L+ K+L  +P KR
Sbjct: 225 --FKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKR 282

Query: 449 IGSLKGSVEIKRHEFF 464
           I S K ++    H +F
Sbjct: 283 I-SAKAALT---HPYF 294

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 57/190 (30%)

Query: 89  LRRLGSGDIGNVYLCQ--IRNPMVGLPQCFYAMKVVDREAL-------AIRKKLHRADME 139
            ++LG G    VY  +      +V + +    +K+ +R+         A+R        E
Sbjct: 5   GKKLGEGTYAVVYKARDKETGRIVAIKK----IKLGERKEAKDGINFTALR--------E 52

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             +L  L HP +  L   F       LV E+    DL                       
Sbjct: 53  IKLLQELKHPNIIGLLDVFGHKSNINLVFEFMET-DLEK--------------------- 90

Query: 200 LFFFFYNNLGFVHTDVTLFF---NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                      V  D ++     + + Y   TL  LEYLH   I++RDLKP N+L+  DG
Sbjct: 91  -----------VIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDG 139

Query: 257 HIMLSDFDLS 266
            + L+DF L+
Sbjct: 140 VLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           V  E +N+ + +F GT  Y+APE I G+ +    D W+LG+ L E+     PF  E    
Sbjct: 151 VSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPP 210

Query: 405 T-LINILKKPLTF--------PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
              I +L   +          P  G+  S+EF      +D I + L K+P +R
Sbjct: 211 LGPIELLSYIVNMPNPELKDEPGNGIKWSEEF------KDFIKQCLEKDPTRR 257

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 12/101 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           ++F GT  Y+APE+   + +    D ++LGV LYE+L    PF GEN E+    ++ K L
Sbjct: 203 RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEE----VMHKTL 258

Query: 415 T--FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
              +  +  S S E      +Q++++ LL  +PK+R  S K
Sbjct: 259 AGRYDPLPPSISPE------MQEIVTALLSSDPKRRPSSSK 293

Length = 496

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 18/121 (14%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 167 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY- 225

Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   +L    +D +++ L  +  +R GS K   E+ +H F 
Sbjct: 226 ---------LIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRR-GSAK---ELLQHPFL 272

Query: 465 K 465
           K
Sbjct: 273 K 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 52/189 (27%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DRE-----ALAIRKKLHRADM 138
           +  L +LG G  G VY  + +           A+K +  D E     + A+R        
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKT-----GEIVALKKIRLDNEEEGIPSTALR-------- 47

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSC-LVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
           E  +L  L HP +  L  +   +     LV EYC   DL         K++ +       
Sbjct: 48  EISLLKELKHPNIVKLL-DVIHTERKLYLVFEYCDM-DL---------KKY-LDKRPGPL 95

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                    +   +          +    + L  L Y H   I++RDLKP+N+L+  DG 
Sbjct: 96  ---------SPNLI----------KSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGV 136

Query: 258 IMLSDFDLS 266
           + L+DF L+
Sbjct: 137 LKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           +F GT  Y++PE +  QG+ S  D W+LG  LYEM      F+G+N    ++ I++ P  
Sbjct: 164 TFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPT- 222

Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            P +  + S++      L  ++  +L K+P  R  +
Sbjct: 223 -PSLPETYSRQ------LNSIMQSMLNKDPSLRPSA 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 18/121 (14%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 167 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY- 225

Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR  +     E+ +H F 
Sbjct: 226 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAK----ELLQHPFL 272

Query: 465 K 465
           K
Sbjct: 273 K 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 352 ARSKSFVGTHEYLAPEVI---SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           A+ KSF+GT  ++APEV       G+    D W LG+   E+     P    +  + L  
Sbjct: 156 AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFL 215

Query: 409 ILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKR 448
           I K     P++      S  F       D I K L K+PKKR
Sbjct: 216 ISKSNFPPPKLKDKEKWSPVF------HDFIKKCLTKDPKKR 251

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 48/172 (27%)

Query: 114 QCFYAMKVVDREALAIRKKLHRADM---EKV-------ILTMLDHPFLPTLYAEF--EAS 161
                 +  D + L   K++   +M   EK        IL  L HP +   Y      ++
Sbjct: 15  TVRKVRRKSDGKILV-WKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSN 73

Query: 162 HYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFF 219
               +VMEYC GGDL     + ++  K          F                      
Sbjct: 74  QTLYIVMEYCEGGDLAQLIQKCKKERKYIEEE-----FIWRILT---------------- 112

Query: 220 NYRFYAAETLLALEYLHM-----MGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                  + LLAL   H        +++RDLKP N+ +  + ++ L DF L+
Sbjct: 113 -------QLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           R Y  + L A+ Y H   I++RD+KPEN+LV E G + L DF
Sbjct: 103 RSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 40/179 (22%)

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DREALAIRKKLHRADMEKVILTML 146
           L ++G G  G VY  + +           A+K +    E+  I K    A  E  +L  L
Sbjct: 4   LGKIGEGTYGVVYKARDKLTGE-----IVAIKKIKLRFESEGIPK---TALREIKLLKEL 55

Query: 147 DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN 206
           +HP +  L   F       LV E+    DLY   + +   + G+  +    +L       
Sbjct: 56  NHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDR---QRGLPESLIKSYLY------ 105

Query: 207 NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                               + L  L + H  GI++RDLKPEN+L+  +G + L+DF L
Sbjct: 106 --------------------QLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGL 144

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF----DLSFKCD 270
           +AAE ++AL+ LH  GIV RDL P N+L+ + GHI L+ F    ++   CD
Sbjct: 90  WAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCD 140

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 50.6 bits (122), Expect = 8e-07
 Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 70/201 (34%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV--- 141
            + LL+ +GSG  G V                 A+       +AI KK+     + +   
Sbjct: 1   RYELLKPIGSGAYGVVCS---------------AVDKRTGRKVAI-KKISNVFDDLIDAK 44

Query: 142 -------ILTMLDHP--------FLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPG 185
                  +L  L H           P    +F    Y  +V E     DL+   +  QP 
Sbjct: 45  RILREIKLLRHLRHENIIGLLDILRPPSPEDFN-DVY--IVTELMET-DLHKVIKSPQP- 99

Query: 186 KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL 245
               ++     +FL     Y                       L  L+YLH   +++RDL
Sbjct: 100 ----LTDDHIQYFL-----YQ---------------------ILRGLKYLHSANVIHRDL 129

Query: 246 KPENVLVREDGHIMLSDFDLS 266
           KP N+LV  +  + + DF L+
Sbjct: 130 KPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 35/151 (23%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           V  + I++ + SFVGT  Y++PE + G  +    D W+LG+ L EM  G  P     + K
Sbjct: 146 VSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP-DAK 204

Query: 405 TLINI---------LKKPLTFPRIGVSSSKE----FE--------EVVKL---------Q 434
            L  +          K+           S      FE           KL         Q
Sbjct: 205 ELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQ 264

Query: 435 DLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           D + K L KNPK+R   LK   E+ +H F K
Sbjct: 265 DFVDKCLKKNPKER-ADLK---ELTKHPFIK 291

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 24/191 (12%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-AIRKKLHRADM 138
            + L   R L  LG G  G VY  ++  P   L     A+K +   A   ++++  +   
Sbjct: 1   EIPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQ--- 57

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSA-KF 195
           E  +++ L HP +  L         +C++ EY   GDL  +  R   P    G  S  + 
Sbjct: 58  EAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVR-NSPHSDVGAESGDET 116

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
           V   L     +   F+H            A +    +EYL     V+RDL   N LV E 
Sbjct: 117 VKSSL-----DCSDFLHI-----------AIQIAAGMEYLSSHHFVHRDLAARNCLVGEG 160

Query: 256 GHIMLSDFDLS 266
             + +SDF LS
Sbjct: 161 LTVKISDFGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
             S VGT  ++APEVI   G  +A D W+LG  + E+L G  P+   N    L  I++  
Sbjct: 156 DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDD 215

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
              P +    S E +      D + +   K+P  R 
Sbjct: 216 --HPPLPEGISPELK------DFLMQCFQKDPNLRP 243

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +++ VGT  Y++PE+  G  +    D W LG  LYE+L     F   N    ++ I++  
Sbjct: 158 AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGN 217

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            T P + V SS       +L  L+  LL ++P+KR
Sbjct: 218 YT-PVVSVYSS-------ELISLVHSLLQQDPEKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 27/132 (20%)

Query: 357 FVGTHEYLAPEVISGQGHGS-AVDWWTLGVFLYEMLYGTTPFKGENNE---KTLINILKK 412
           +V T  Y APE++    H +  VD W++G  + E+L G T F G ++    K ++N++  
Sbjct: 175 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGT 234

Query: 413 PLTFPRIGVSSS--------------KEFEEV-----VKLQDLISKLLVKNPKKRIGSLK 453
           P       +SS               K+F+EV         DL+ K+LV +P KRI    
Sbjct: 235 PDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRI---- 290

Query: 454 GSVEIKRHEFFK 465
            + E   H +  
Sbjct: 291 TAAEALAHPYLA 302

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 22/131 (16%)

Query: 350 INARSKSFVGTHEYLAPEVI--SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           I + + S VGT  Y +PE++    + +    D W LG  +YE+  G TPF   NN   LI
Sbjct: 194 IESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLI 253

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
           + LK+    P  G   SKE      L  LI  LL  + K+R  +L            + +
Sbjct: 254 SELKRGPDLPIKG--KSKE------LNILIKNLLNLSAKERPSAL------------QCL 293

Query: 468 NWALIRSIKPP 478
            + +I+++ PP
Sbjct: 294 GYQIIKNVGPP 304

Length = 1021

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 350 INARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF 397
           IN  +++F GT +Y+APEVI    +G+G+  D W+LG  + EM  G  PF
Sbjct: 162 INPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPF 211

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 22/107 (20%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK----GENNEKTLINILKKPLTFPR 418
           Y APEV        A DWW+LG  L+E+L G T  +    G N   TL            
Sbjct: 148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGINTHTTL-----------N 196

Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFF 464
           I    S+E       + L+ +LL  NP +R+G+    VE IK H FF
Sbjct: 197 IPEWVSEE------ARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NEKTLINILKKPL 414
            +GT  ++APEV+ G+ +G + D W++G  + EM     P+  E   N   LI  +    
Sbjct: 168 LLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT 227

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           T P I    S        L+D+  + L   P+ R      S E+ +H  F+
Sbjct: 228 TAPSIPEHLSPG------LRDVTLRCLELQPEDR----PPSRELLKHPVFR 268

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 38/181 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L R+G G  G V+       +    Q   A+K++D E      ++     E  +L+ 
Sbjct: 6   FTKLERIGKGSFGEVF-----KGIDNRTQQVVAIKIIDLEE--AEDEIEDIQQEITVLSQ 58

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
            D P++   Y  +       ++MEY  GG      +  P   F I++             
Sbjct: 59  CDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATM------------ 106

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                                E L  L+YLH    ++RD+K  NVL+ E G + L+DF +
Sbjct: 107 -------------------LKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGV 147

Query: 266 S 266
           +
Sbjct: 148 A 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 353 RSKSFVGTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +  +F+GT  ++APEV+         +    D W+LG+ L E+     P    N  + L+
Sbjct: 159 KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLL 218

Query: 408 NILK-KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            ILK +P T  +    SS          D +   LVK+P  R      + E+ +H F 
Sbjct: 219 KILKSEPPTLDQPSKWSS-------SFNDFLKSCLVKDPDDRP----TAAELLKHPFV 265

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +++ +GT  YL+PE+   + + +  D W LG  LYEM      F+  N +  ++ I++  
Sbjct: 158 ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRG- 216

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            ++P +    S +      L++L+S+L  +NP+ R
Sbjct: 217 -SYPPVSSHYSYD------LRNLVSQLFKRNPRDR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 32/132 (24%)

Query: 358 VGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---INILKKP 413
           V T  Y APE++ G       VD W +G    E+L G+  F GEN+ + L      L  P
Sbjct: 161 VATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTP 220

Query: 414 ----------------LTFP-----RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL 452
                           +TFP      +         E +   DL+  LLV +P KR+   
Sbjct: 221 NEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEAL---DLLKGLLVYDPSKRL--- 274

Query: 453 KGSVEIKRHEFF 464
             + E  RH +F
Sbjct: 275 -SAAEALRHPYF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 37/183 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DREALAIRKKLHRADMEKVIL 143
           +R  + LG G  G VYLC   +    L     A+K V  D ++   +K+++  + E  +L
Sbjct: 4   WRRGKLLGQGAFGRVYLCYDVDTGREL-----AVKQVPFDPDSPETKKEVNALECEIQLL 58

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L H  +   Y          + MEY PGG +     +   K +G  +           
Sbjct: 59  KNLQHERIVQYYGCLRDDETLSIFMEYMPGGSV-----KDQLKAYGALT----------- 102

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                      VT     R Y  + L  +EYLH   IV+RD+K  N+L    G++ L DF
Sbjct: 103 ---------ETVT-----RKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDF 148

Query: 264 DLS 266
             S
Sbjct: 149 GAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           +F   + L  L+Y+H  GI++RDLKP N+ V ED  + + DF L+   D
Sbjct: 121 QFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD 169

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 211 VHTDVTL---FFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           +H+D  L      Y  Y  + L  L+Y+H   +++RDLKP N+LV ED  + + DF
Sbjct: 98  IHSDQPLTEEHIRYFLY--QLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDF 151

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 25/120 (20%)

Query: 355 KSFVGTHEYLAPEV-ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN------------ 401
             +V T  Y APE+ +S Q +  A+D W++G  L E+L     FKG++            
Sbjct: 167 TEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVL 226

Query: 402 ---NEKTLINI--------LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
              +E+TL  I        ++     P+    S       + L DL+ KLL  +P KRI 
Sbjct: 227 GTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLAL-DLLEKLLAFDPTKRIS 285

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 40/185 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
           +    +  LG+G+ G+V   +             A KVV   A  ++RK++ R   E  I
Sbjct: 5   EDLETISDLGAGNGGSVSKVKHIPTGT-----VMAKKVVHIGAKSSVRKQILR---ELQI 56

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           +     P++ + Y  F   +  C+ ME+   G L                          
Sbjct: 57  MHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDR------------------------ 92

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLS 261
             Y   G +  ++         A   +  L YL+ +  I++RD+KP N+LV   G I L 
Sbjct: 93  -IYKKGGPIPVEIL-----GKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLC 146

Query: 262 DFDLS 266
           DF +S
Sbjct: 147 DFGVS 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 45/185 (24%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
             +L   +G G+ G+V L   R   V       A+K +  ++ A +  L  A     ++T
Sbjct: 7   ELKLGATIGKGEFGDVMLGDYRGQKV-------AVKCLKDDSTAAQAFLAEAS----VMT 55

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFLLF 201
            L HP L  L       +   +V EY   G   D   +R R                   
Sbjct: 56  TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRA-----------------V 98

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                 LGF              A +    +EYL     V+RDL   NVLV ED    +S
Sbjct: 99  ITLAQQLGF--------------ALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVS 144

Query: 262 DFDLS 266
           DF L+
Sbjct: 145 DFGLA 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           +A   +A    +V T  Y APEVI    H    VD W++G  + EML G T FKG++   
Sbjct: 163 LARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD 222

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKN----PKKRIGSL 452
            L  ILK         V+     E V KL+D  +K  +K+    P+K   +L
Sbjct: 223 QLTQILK---------VTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTL 265

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           L  L++LH   IV+RDLKPEN+LV   G + L+DF L+
Sbjct: 118 LRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 46/190 (24%), Positives = 68/190 (35%), Gaps = 59/190 (31%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA--------D 137
           F  LR +G G  G VY               +A  V   E +AI+K  +          D
Sbjct: 17  FTDLREIGHGSFGAVY---------------FARDVRTNEVVAIKKMSYSGKQSNEKWQD 61

Query: 138 MEKVI--LTMLDHPFLPTLYAEFEASHYSCLVMEYCPG--GDLYAARQRQPGKRFGISSA 193
           + K +  L  L HP        +   H + LVMEYC G   D+     ++P +   I++ 
Sbjct: 62  IIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEV-HKKPLQEVEIAAI 120

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                                              L  L YLH    ++RD+K  N+L+ 
Sbjct: 121 -------------------------------CHGALQGLAYLHSHERIHRDIKAGNILLT 149

Query: 254 EDGHIMLSDF 263
           E G + L+DF
Sbjct: 150 EPGTVKLADF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 210 FVHTDVTLFF----------NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           +VHTD+  +           N + +  + L  L Y+H   I++RDLKP+N+L+ + G + 
Sbjct: 84  YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELK 143

Query: 260 LSDFDL---------SFKCDVVPKLLRPKLSFEAIEKYEKC 291
           L+DF L         ++  +VV    RP        +Y  C
Sbjct: 144 LADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTC 184

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 29/131 (22%)

Query: 358 VGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN--------------- 401
           V T  Y  PE++ G    G  VD W++G  L E+  G   F+G                 
Sbjct: 162 VITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSP 221

Query: 402 NEKT--------LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
            ++             LK    + R      K   +   L DL+ KLL  +PKKRI S  
Sbjct: 222 TDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSAL-DLLDKLLTLDPKKRI-SAD 279

Query: 454 GSVEIKRHEFF 464
            +++   HE+F
Sbjct: 280 QALQ---HEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 346 VAEPINARSKSF--VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
           +++ ++++SK++  VGT  Y++PE+  G+ +    D W LG  LYE+      F+  N  
Sbjct: 148 ISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP 207

Query: 404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             ++ I+    TF  I    S +      L+ LI  +L  +P KR
Sbjct: 208 ALVLKIMSG--TFAPISDRYSPD------LRQLILSMLNLDPSKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 219 FNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRP 278
            +++ +  + L  L+Y+H   +++RDLKP N+LV  D  + + DF L+      P     
Sbjct: 105 AHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAG 164

Query: 279 KLS 281
            ++
Sbjct: 165 FMT 167

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 37/196 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRN--PMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
              RL  +LG G  G V+LC+       +G      A +   +  L   K L RAD+ K 
Sbjct: 5   QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEG----APEFDGQPVLVAVKML-RADVTKT 59

Query: 142 ----------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGI 190
                     I++ L +P +  L     +    C++ EY   GDL     QR+    F  
Sbjct: 60  ARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTH 119

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV 250
           +              NN+  V        N  + A +    ++YL  +  V+RDL   N 
Sbjct: 120 A--------------NNIPSVS-----IANLLYMAVQIASGMKYLASLNFVHRDLATRNC 160

Query: 251 LVREDGHIMLSDFDLS 266
           LV     I ++DF +S
Sbjct: 161 LVGNHYTIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +S  GT  +++PEVISG+G+G   D W+LG  + EML    P+        +  I  +P 
Sbjct: 167 RSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQP- 225

Query: 415 TFPRIGVSSSKEFEEVVK 432
           T P++    S+   + + 
Sbjct: 226 TNPQLPSHISEHARDFLG 243

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 32/187 (17%)

Query: 91  RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK---------- 140
           +LG G  G V+LC+    M       +++ V   + + +  K+ R D  K          
Sbjct: 12  KLGEGQFGEVHLCEAEG-MEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEI 70

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQR-QPGKRFGISSAKFVFFL 199
            I++ L  P +  L A    S   C++ EY   GDL     R +P +    +    + + 
Sbjct: 71  KIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYS 130

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                  F A +    ++YL  +  V+RDL   N LV ++  I 
Sbjct: 131 --------------------TLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIK 170

Query: 260 LSDFDLS 266
           ++DF +S
Sbjct: 171 IADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-------------- 402
           +V T  Y APEVI G G+   VD W++G  + E++ G+  F+G ++              
Sbjct: 182 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 241

Query: 403 --------EKTLIN-ILKKPL--------TFPRIGVSSSKEFEEVVKLQ--DLISKLLVK 443
                   + T+ N +  +P          FP     S  E +++   Q  DL+SK+LV 
Sbjct: 242 SAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVI 301

Query: 444 NPKKRI 449
           +P KRI
Sbjct: 302 DPDKRI 307

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 39/194 (20%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
            +R +G G  G V L + R          Y +K ++    A R++   A+ E  +L+ L 
Sbjct: 4   FVRVVGKGSYGEVSLVRHRTDGKQ-----YVIKKLNLRN-ASRRERKAAEQEAQLLSQLK 57

Query: 148 HPFLPTLYAEFEASHYSC-LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN 206
           HP +      +E       +VM +C GGDLY   + Q GK            LL      
Sbjct: 58  HPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGK------------LL------ 99

Query: 207 NLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFD-- 264
                   V  +F       +  +AL+YLH   I++RDLK +NV +     I + D    
Sbjct: 100 ----PENQVVEWF------VQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIA 149

Query: 265 --LSFKCDVVPKLL 276
             L  +CD+   L+
Sbjct: 150 RVLENQCDMASTLI 163

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 56/199 (28%)

Query: 82  GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV----DREALAIRKKLHRAD 137
            +  +  L ++G G  G V+  + +       +   A+K V    ++E   I      A 
Sbjct: 10  EVSKYEKLAKIGQGTFGEVFKARHKKT-----KQIVALKKVLMENEKEGFPIT-----AL 59

Query: 138 MEKVILTMLDHP----------FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
            E  IL +L H              T Y  ++ S Y  LV E+C   DL A        +
Sbjct: 60  REIKILQLLKHENVVNLIEICRTKATPYNRYKGSFY--LVFEFCEH-DL-AGLLSNKNVK 115

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
           F +S  K V  +L                            L  L Y+H   I++RD+K 
Sbjct: 116 FTLSEIKKVMKML----------------------------LNGLYYIHRNKILHRDMKA 147

Query: 248 ENVLVREDGHIMLSDFDLS 266
            N+L+ +DG + L+DF L+
Sbjct: 148 ANILITKDGILKLADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           R+   + L AL+Y+H   +++RDLKP N+L+  D  + L+DF L+
Sbjct: 110 RYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLA 154

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + + VGT  YL+PE+   + + +  D W+LG  LYE+     PF+G N  + ++ I +  
Sbjct: 159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQG- 217

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             F  I  + S++      L+ LIS+L   +P+ R
Sbjct: 218 -YFAPISPNFSRD------LRSLISQLFKVSPRDR 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           +F   + L  L+Y+H  GI++RDLKP NV V ED  + + DF L+ + D
Sbjct: 121 QFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD 169

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAV-----DWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            R  +F+GT  ++APEVI+   +  A      D W+LG+   EM  G  P    +  + L
Sbjct: 166 GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL 225

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
             I + P   PR+    SK++ +  K Q  I   LVKN  +R      + ++ +H F
Sbjct: 226 FLIPRNPA--PRL---KSKKWSK--KFQSFIESCLVKNHSQR----PTTEQLMKHPF 271

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           KS  GT  +++PEVISG+G+G   D W++   + EML    P+        +  I  +P 
Sbjct: 167 KSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQP- 225

Query: 415 TFPRI--GVSSS 424
           T P +  GVS +
Sbjct: 226 TKPMLPDGVSDA 237

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 31/45 (68%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           +++  + L  L+Y+H  G+V+RDLKP N+L+ E+  + + DF L+
Sbjct: 111 QYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLA 155

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 50/189 (26%), Positives = 70/189 (37%), Gaps = 45/189 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D   +L  LG G+ G+VY    R   V +     AMK +  E      K ++  ME  IL
Sbjct: 1   DEIEVLDELGKGNYGSVYKVLHRPTGVTM-----AMKEIRLEL--DESKFNQIIMELDIL 53

Query: 144 TMLDHPFLPTLYAEF--EASHYSCLVMEYCPGGD---LYAARQRQPGKRFGISSAKFVFF 198
                P++   Y  F  E + Y C  MEY   G    LYA      G    +        
Sbjct: 54  HKAVSPYIVDFYGAFFIEGAVYMC--MEYMDAGSLDKLYAGGVATEGIPEDV-------- 103

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL-HMMGIVYRDLKPENVLVREDGH 257
                                  R      +  L++L     I++RD+KP NVLV  +G 
Sbjct: 104 ----------------------LRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQ 141

Query: 258 IMLSDFDLS 266
           + L DF +S
Sbjct: 142 VKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 21/121 (17%)

Query: 351 NARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             R  +F+GT  ++APEVI+        + +  D W+LG+   E+  G  P    +  + 
Sbjct: 167 LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRA 226

Query: 406 LINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
           L  I + P   L  P    + SK+F       D IS+ L+KN ++R        E+  H 
Sbjct: 227 LFKIPRNPPPTLKSPE---NWSKKF------NDFISECLIKNYEQR----PFMEELLEHP 273

Query: 463 F 463
           F
Sbjct: 274 F 274

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 30/131 (22%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP-FKGENNEKTLINILK--- 411
           S V T  Y APEV+    + + VD W++G    E+ +   P F+G +    L  I     
Sbjct: 165 SVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAEL-FRRRPLFRGTSEADQLDKIFDVIG 223

Query: 412 -------------KPLTFPRIGVSSSKEFEEVVK-----LQDLISKLLVKNPKKRIGSLK 453
                           +FP     + + F+  V        DL+ K+L  NP KRI + +
Sbjct: 224 LPSEEEWPRNVSLPRSSFPS---YTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFE 280

Query: 454 GSVEIKRHEFF 464
                 +H +F
Sbjct: 281 A----LQHPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 30/151 (19%)

Query: 356 SFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI----- 409
           S V T  Y APE++ G + +  AVD W++G    E+L G   F GEN    L  I     
Sbjct: 192 SKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLG 251

Query: 410 ----------LKKPLTFPRIGVSSSKEFEEVVKLQ-----DLISKLLVKNPKKRIGSLKG 454
                      K PL          K+ + +         DL+  LL  NP +RI S K 
Sbjct: 252 TPNEDNWPQAKKLPLYTE-FTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERI-SAKE 309

Query: 455 SVEIKRHEFFKGINWALIRSIKPPEVPNNDL 485
           +++   HE+FK  +  L     P ++P N L
Sbjct: 310 ALK---HEYFK--SDPL--PCDPSQLPFNFL 333

Length = 335

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           + L  L  LH +GIV+RD+KPEN+LV  DG + + DF
Sbjct: 317 QVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDF 353

Length = 507

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 10/67 (14%)

Query: 210 FVHTDVTLF----------FNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           ++HTD+  +          +N R +  + L  L Y+H   I++RDLKP+N+L+   G + 
Sbjct: 84  YMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELK 143

Query: 260 LSDFDLS 266
           L+DF L+
Sbjct: 144 LADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 38/181 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L R+G G  G VY       +    +   A+K++D E      ++     E  +L+ 
Sbjct: 6   FTKLERIGKGSFGEVY-----KGIDNRTKEVVAIKIIDLEE--AEDEIEDIQQEITVLSQ 58

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
            D P++   Y  +       ++MEY  GG   A    +PG    +        L      
Sbjct: 59  CDSPYITRYYGSYLKGTKLWIIMEYLGGGS--ALDLLKPGP---LEETYIATIL------ 107

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                                E L  L+YLH    ++RD+K  NVL+ E G + L+DF +
Sbjct: 108 --------------------REILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGV 147

Query: 266 S 266
           +
Sbjct: 148 A 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK- 412
           + S VGT  Y++PE I   G+    D W+LG  LYEM    +PF G+  +  L ++ +K 
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD--KMNLFSLCQKI 220

Query: 413 -PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               +P +      E     KL++L+S  +  +P +R
Sbjct: 221 EQCDYPPLPTEHYSE-----KLRELVSMCIYPDPDQR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           L AL +LH  G+++RD+K +++L+  DG + LSDF
Sbjct: 125 LKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 34/121 (28%)

Query: 357 FVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL----- 410
           +V T  Y APE++ G +G+ + VD W++G    E+L     F G++    L  I      
Sbjct: 158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGT 217

Query: 411 ----------------------KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
                                 K  +  P++  ++S +        DL+S++L  +P KR
Sbjct: 218 PDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQ------ALDLLSQMLHYDPHKR 271

Query: 449 I 449
           I
Sbjct: 272 I 272

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 201 FFFFYNNLGFVHTDVTLFFNY-------RFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           F  FY  + ++ TD+     +       ++   + L  L+Y+H  GI++RDLKP N+ V 
Sbjct: 92  FQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVN 151

Query: 254 EDGHIMLSDFDLSFKCD 270
           ED  + + DF L+   D
Sbjct: 152 EDCELKILDFGLARHAD 168

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 38/181 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F  L ++G G  G V+       +    Q   A+K++D E      ++     E  +L+ 
Sbjct: 6   FTKLEKIGKGSFGEVF-----KGIDNRTQKVVAIKIIDLEE--AEDEIEDIQQEITVLSQ 58

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
            D P++   Y  +       ++MEY  GG   A    +PG                    
Sbjct: 59  CDSPYVTKYYGSYLKDTKLWIIMEYLGGGS--ALDLLEPGP------------------- 97

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
                  T +           E L  L+YLH    ++RD+K  NVL+ E G + L+DF +
Sbjct: 98  ----LDETQIATILR------EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGV 147

Query: 266 S 266
           +
Sbjct: 148 A 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 30/119 (25%)

Query: 358 VGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---INIL--- 410
           V T  Y APE++ G  H  SAVD W++G    E+L     F+ ++  + L    ++L   
Sbjct: 165 VVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTP 224

Query: 411 --------------------KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                                KP + P +   SS+   E V    L+ ++LV +P KRI
Sbjct: 225 SLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAV---HLLCRMLVFDPDKRI 280

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           Y  + L  L + H   +++RDLKP+N+L+  +G I L+DF L+
Sbjct: 105 YLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 220 NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           N + +  + L  L Y H   I++RDLKP+N+L+ E G + L+DF L+
Sbjct: 104 NVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           KS  GT  +++PEVISG+G+G   D W++G  + EML    P+        +  I  +P 
Sbjct: 167 KSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQP- 225

Query: 415 TFPRIGVSSSKEFEEVVK 432
           T P +    S    + +K
Sbjct: 226 TNPVLPPHVSDHCRDFLK 243

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 43/179 (24%)

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-DREALAIRKKLHRADMEKVILTMLD 147
           + R+GSG  G VY  ++ +   G     YA+KV+       +R+++ R   E  IL  ++
Sbjct: 79  VNRIGSGAGGTVY--KVIHRPTGRL---YALKVIYGNHEDTVRRQICR---EIEILRDVN 130

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           HP +   +  F+ +    +++E+  GG L             I+  +F+           
Sbjct: 131 HPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTH---------IADEQFL----------- 170

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                 DV         A + L  + YLH   IV+RD+KP N+L+    ++ ++DF +S
Sbjct: 171 -----ADV---------ARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           E L ALE+LH   +++RD+K +N+L+  DG + L+DF
Sbjct: 123 ECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           R Y  + L  +E+ H   I++RD+KPEN+LV + G + L DF
Sbjct: 103 RKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 36/180 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + +  L ++G G  G V+ C  RN   G  Q     K V+ E   + KK+  A  E  +L
Sbjct: 1   EKYEKLSKIGEGSYGVVFKC--RNRETG--QIVAIKKFVESEDDPVIKKI--ALREIRML 54

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L HP L  L   F       LV EYC    L    +   G                  
Sbjct: 55  KQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRG------------------ 96

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                  V   +     +     +TL A+ + H    ++RD+KPEN+L+ + G I L DF
Sbjct: 97  -------VPEHLIKKIIW-----QTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 201 FFFFYNNLGFVHTDVTLFFNY--------RFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
           F  FY  + F+ TD+     +        +F   + L  L+Y+H  GI++RDLKP N+ V
Sbjct: 92  FHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAV 151

Query: 253 REDGHIMLSDFDLSFKCD 270
            ED  + + DF L+ + D
Sbjct: 152 NEDCELKILDFGLARQTD 169

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           L AL YLH  G+++RD+K +++L+  DG I LSDF
Sbjct: 128 LRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDF 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVRE-DGHIMLSDF----DLSFKCDVVPK--LLRPK 279
           + L AL+ LH  GIV+RD+KP+N++  E  G   + D     DL    + +PK  LL P+
Sbjct: 263 QILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPR 322

Query: 280 LSFEAIEKYEKCSIPSCATPMQPVL 304
             + A E+Y    I S  TP  P  
Sbjct: 323 --YAAPEQY----IMSTQTPSAPSA 341

Length = 566

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 26/124 (20%)

Query: 349 PINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           P+N  S   V T  Y AP+V+ G + + +++D W++G  + EM+ G   F G NNE  L+
Sbjct: 153 PVNTFSNEVV-TLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLL 211

Query: 408 NILK-----KPLTFPRIGVSSSKEFE------EVVKLQ-----------DLISKLLVKNP 445
            I +        T+P  G+S   E++          LQ           DL+ +LL  NP
Sbjct: 212 KIFRIMGTPTESTWP--GISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNP 269

Query: 446 KKRI 449
           + RI
Sbjct: 270 ELRI 273

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + L  L++LH   +V+RDLKP+N+LV   G I L+DF L+
Sbjct: 118 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           +  +FVGT  ++APEVI    + S  D W+LG+   E+  G  P    +  + L  I K 
Sbjct: 157 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKN 216

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
               P +    SK F+E       I   L K+P  R      + E+ +H+F
Sbjct: 217 NP--PTLTGEFSKPFKE------FIDACLNKDPSFR----PTAKELLKHKF 255

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 23/116 (19%)

Query: 357 FVGTHEYLAPEVISGQGHGS-AVDWWTLGVFLYEMLYGTTPFKGENN----EKTL----- 406
           +V T  Y APE++ G    +  VD W++G  L EML G   F G +     EK +     
Sbjct: 172 YVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGP 231

Query: 407 -----INILKKPLT---FPRIGVSSSKEFEEVVKLQ-----DLISKLLVKNPKKRI 449
                I  +K P        +     K  +E++        DL+ KLLV NP KR+
Sbjct: 232 PSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRL 287

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK- 412
           + S VGT  Y++PE I   G+    D W+LG  LYEM    +PF G+  +  L ++ KK 
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD--KMNLYSLCKKI 220

Query: 413 -PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               +P +    S  + E  +L+ L++  +  +P+KR
Sbjct: 221 EQCDYPPL---PSDHYSE--ELRQLVNMCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 1/35 (2%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           L +L+++H  GI +RD+KPEN+L+++D  + L+DF
Sbjct: 110 LKSLDHMHRNGIFHRDIKPENILIKDD-ILKLADF 143

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 220 NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           N + +  + L  L Y H   +++RDLKP+N+L+ E G + L+DF L+
Sbjct: 105 NVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           ++E  NA    +V T  Y +PE++ G  +G AVD W++G  L E+  G   F GE+    
Sbjct: 150 LSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQ 209

Query: 406 LINILK 411
           L  I K
Sbjct: 210 LFTIQK 215

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 220 NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           N + +  + L  L Y H   +++RDLKP+N+L+ E G + L+DF L+
Sbjct: 105 NVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           KS  GT  ++APEVI+  G+G   D W++G  ++EM  G  P 
Sbjct: 166 KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPL 208

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 29/128 (22%)

Query: 139 EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
           E  I+  LDH  L  LY     +H   +V E  P G L   R R+               
Sbjct: 46  EAAIMHSLDHENLIRLYG-VVLTHPLMMVTELAPLGSLLD-RLRKDALG----------- 92

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                        H  ++   +Y   A +    + YL     ++RDL   N+L+  D  +
Sbjct: 93  -------------HFLISTLCDY---AVQIANGMRYLESKRFIHRDLAARNILLASDDKV 136

Query: 259 MLSDFDLS 266
            + DF L 
Sbjct: 137 KIGDFGLM 144

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 38/135 (28%)

Query: 360 THE-----YLAPEVISGQGHGS-AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           THE     Y APE++ G    S  VD W++G    EM+     F G++    L  I +  
Sbjct: 157 THEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTL 216

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVVKL-----QDLISKLLVKNPKKRI 449
                            KP TFP+    + ++  +VV        DL+SK+LV +P KRI
Sbjct: 217 GTPDEDVWPGVTSLPDYKP-TFPKW---ARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRI 272

Query: 450 GSLKGSVEIKRHEFF 464
            S K +++   H +F
Sbjct: 273 -SAKAALQ---HPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           N    S  G+  ++APEV+    +    D W+LG  + EML G  PF      + +  I 
Sbjct: 166 NGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIG 225

Query: 411 KKPL-TFPRIGVSSSKEFEE 429
           +      P    S + +F E
Sbjct: 226 ENASPEIPSNISSEAIDFLE 245

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 357 FVGTHEYLAPEVISGQGHGS-AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           +V T  Y APEVI    H +  VD W++G  + EML G   FKG ++   L+ I+K    
Sbjct: 175 YVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMK---- 230

Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKN----PKKRIGSL 452
              +  + SKEF  V KLQ   +K  VK      KK   SL
Sbjct: 231 ---VTGTPSKEF--VQKLQSEDAKNYVKKLPRFRKKDFRSL 266

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 34/127 (26%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-------------- 402
           +V T  Y APEVI G G+   VD W++G  + EM+ GT  F G ++              
Sbjct: 177 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTP 236

Query: 403 --------EKTLINILK-----KPLTFPRI--GVSSSKEFEEVVKL-----QDLISKLLV 442
                   + T+ N ++        +F  +   V    + E   KL     +DL+SK+LV
Sbjct: 237 SDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLV 296

Query: 443 KNPKKRI 449
            +P+KRI
Sbjct: 297 IDPEKRI 303

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 43/182 (23%)

Query: 86  FRLLRRLGSGDIGNVYLCQ-IR-NPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           F  LR +G G  G VY  + +R + +V + +  Y+ K  + +   I K++         L
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVR-------FL 69

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLF 201
             L HP        +   H + LVMEYC G   DL     ++P +   I++         
Sbjct: 70  QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAA--------- 119

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                     H                L  L YLH   +++RD+K  N+L+ E G + L 
Sbjct: 120 --------VTHG--------------ALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLG 157

Query: 262 DF 263
           DF
Sbjct: 158 DF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 231 ALEYLH-MMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           ALEYLH  + +++RD+KP NVL+  +G + L DF +S
Sbjct: 115 ALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           +F   + L  L+Y+H   I++RDLKP N+ V ED  + + DF L+   D
Sbjct: 123 QFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD 171

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           L AL YLH  G+++RD+K +++L+  DG + LSDF
Sbjct: 127 LQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDF 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 50/189 (26%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD------ME 139
           + L++R+GSG  G+VY  + RN   G      A+K++         KL   D       E
Sbjct: 11  YELIQRVGSGTYGDVY--KARNLHTGE---LAAVKII---------KLEPGDDFSLIQQE 56

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             ++    H  +   +  + +     + MEYC GG L                       
Sbjct: 57  IFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQD--------------------- 95

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                Y+  G +           +   ETL  L YLH  G ++RD+K  N+L+ ++G + 
Sbjct: 96  ----IYHVTGPLSE-----LQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVK 146

Query: 260 LSDFDLSFK 268
           L+DF ++ K
Sbjct: 147 LADFGVAAK 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 220 NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           N R +  + L  L Y H   +++RDLKP+N+L+ E G + L+DF L+
Sbjct: 104 NVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSA----VDWWTLGVFLYEMLYGTTPFKGENNE-KTL 406
           A+++S  G   Y+APE I             D W+LG+ L E+  G  P+K    E + L
Sbjct: 170 AKTRS-AGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVL 228

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             IL++           S +F         +   L K+ +KR
Sbjct: 229 TKILQEEPPSLPPNEGFSPDF------CSFVDLCLTKDHRKR 264

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 30/134 (22%)

Query: 360 THE-----YLAPEVISGQGHGSA-VDWWTLGVFLYEMLYGTTPFKGENNEKTLINI---L 410
           THE     Y APE++ G  H S  VD W++G    EM+     F G++    L  I   L
Sbjct: 161 THEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRIL 220

Query: 411 KKPLTFPRIGVSSSKEFEE-------------VVKLQ----DLISKLLVKNPKKRIGSLK 453
             P      GV+S  +++              V  L+    DL+SK+L  +P KRI + +
Sbjct: 221 GTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITA-R 279

Query: 454 GSVEIKRHEFFKGI 467
            ++E   HE+FK +
Sbjct: 280 AALE---HEYFKDL 290

Length = 294

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP 396
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P
Sbjct: 145 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYP 201

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           ++F+  + L AL+Y+H   + +RDLKP+N+L   D  + + DF L+
Sbjct: 105 HQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLA 150

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 13/80 (16%)

Query: 364 LAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR----- 418
           +APEVI GQ +    D ++LG+ LYE L    P    N E+ L  IL+  L         
Sbjct: 71  MAPEVIQGQSYTEKADIYSLGITLYEALDYELP---YNEERELSAILEILLNGMPADDPR 127

Query: 419 -----IGVSSSKEFEEVVKL 433
                 GVS+++ FE+ ++L
Sbjct: 128 DRSNLEGVSAARSFEDFMRL 147

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features. Length = 176

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 21/120 (17%)

Query: 332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML 391
           GD     LL  P        A + ++VGT  Y+ PE+     + +  D W+LG  LYE+ 
Sbjct: 142 GDFGSARLLTSP-------GAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELC 194

Query: 392 YGTTPFKGENNEKTLINILK---KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               PF+  + +  ++ + +   KPL        S   +E    L+ LI ++  +NP+ R
Sbjct: 195 TLKHPFQANSWKNLILKVCQGSYKPL-------PSHYSYE----LRSLIKQMFKRNPRSR 243

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPK 274
           E L ALE+LH   +++RD+K +N+L+  DG + L+DF   F   + P+
Sbjct: 124 ECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPE 169

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 29/132 (21%)

Query: 357 FVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK--- 412
           +V T  Y APE++ G   +G AVD W +G  + EML G   F G+++   L +I+K    
Sbjct: 160 YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGN 219

Query: 413 ------------PLTFPRIGVSSSKEFEEVVK--------LQDLISKLLVKNPKKRIGSL 452
                       PL F  + +   KE E + K        + DL  + L  +P  R    
Sbjct: 220 LIPRHQEIFQKNPL-FAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRP--- 275

Query: 453 KGSVEIKRHEFF 464
             S ++  HEFF
Sbjct: 276 -SSSQLLHHEFF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 128 LCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 165

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 18/187 (9%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALA-IRKKLHRADMEK 140
           ++   +R +G G  G V+  Q R P +    P    A+K++  EA A ++    R   E 
Sbjct: 5   NNIEYVRDIGQGAFGRVF--QARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR---EA 59

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFL 199
            ++   DHP +  L          CL+ EY   GDL    R R P       S       
Sbjct: 60  ALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSP---RAQCSLSHSTSS 116

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                 N L    T+          A +    + YL     V+RDL   N LV E+  + 
Sbjct: 117 ARKCGLNPLPLSCTEQLCI------AKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVK 170

Query: 260 LSDFDLS 266
           ++DF LS
Sbjct: 171 IADFGLS 177

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L E+  G  P   
Sbjct: 145 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP- 203

Query: 400 ENNEKTLINILKKPL 414
             + K L  I  +P+
Sbjct: 204 PPDAKELEAIFGRPV 218

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 35/122 (28%)

Query: 357 FVGTHEYLAPEV-ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           +V T  Y APE+ ++ +G+  A+D W++G  L EML     F G++    L  IL     
Sbjct: 169 YVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGV--- 225

Query: 416 FPRIGVSSSKEFEEVVKLQ----------------------------DLISKLLVKNPKK 447
              +G  S ++   ++ L+                            DL+ K+L  NP K
Sbjct: 226 ---LGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHK 282

Query: 448 RI 449
           RI
Sbjct: 283 RI 284

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 352 ARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           A+ KSF+GT  ++APEV + +   G+    D W +G+   E+     P    +  + L  
Sbjct: 161 AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFL 220

Query: 409 ILKKPLTFPRI--GVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           + K     P++   +  S  F   VK+       L KNPKKR
Sbjct: 221 MTKSNFQPPKLKDKMKWSNSFHHFVKMA------LTKNPKKR 256

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 33/126 (26%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 237

Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297

Query: 444 NPKKRI 449
           +P KRI
Sbjct: 298 DPAKRI 303

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           + L AL+Y+H  G ++R +K  ++L+  DG ++LS  
Sbjct: 109 DVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGL 145

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 34/194 (17%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-DREALAIRKKLHRADME 139
           + L   R +  LG    G VY   +     G      A+K + D+    +R++      E
Sbjct: 2   INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKH---E 58

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
            ++ + L HP +  L           ++  YC   DL+                    FL
Sbjct: 59  AMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHE-------------------FL 99

Query: 200 LFFFFYNNLGFVHTDVTL--------FFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
           +    ++++G    D T+        F +      +    +E+L    +V++DL   NVL
Sbjct: 100 VMRSPHSDVGSTDDDKTVKSTLEPADFVH---IVTQIAAGMEFLSSHHVVHKDLATRNVL 156

Query: 252 VREDGHIMLSDFDL 265
           V +  ++ +SD  L
Sbjct: 157 VFDKLNVKISDLGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPK 279
           + L  L+YLH   I++RDLK  N+L+ + G + ++DF L+    +  K + PK
Sbjct: 116 QLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPK 168

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 33/199 (16%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH-------RAD 137
               + +LG G  G V+LC+         + F      D   L   K L        R D
Sbjct: 6   PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNARED 65

Query: 138 MEK--VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAK 194
             K   IL+ L  P +  L          C++MEY   GDL    ++          ++K
Sbjct: 66  FLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSK 125

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            + F       + L ++             A +    + YL  +  V+RDL   N LV +
Sbjct: 126 SLSF-------STLLYM-------------ATQIASGMRYLESLNFVHRDLATRNCLVGK 165

Query: 255 DGHIMLSDFDLS---FKCD 270
           +  I ++DF +S   +  D
Sbjct: 166 NYTIKIADFGMSRNLYSSD 184

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 45/190 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           L +F++ +++G G    VY  +C +   +V       A+K V    +   K       E 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVV-------ALKKVQIFEMMDAKARQDCLKEI 53

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL-----YAARQRQPGKRFGISSAKF 195
            +L  LDHP +    A F  ++   +V+E    GDL     +  +Q++            
Sbjct: 54  DLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRL----------- 102

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                             + T++     Y  +   ALE++H   I++RD+KP NV +   
Sbjct: 103 ----------------IPERTIWK----YFVQLCSALEHMHSKRIMHRDIKPANVFITAT 142

Query: 256 GHIMLSDFDL 265
           G + L D  L
Sbjct: 143 GVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 47/178 (26%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLDHPF 150
           LG G+ G VY          L +   A+KV+    L I  +L +  M ++ IL   D P+
Sbjct: 9   LGHGNGGTVY-----KAYHLLTRRILAVKVI---PLDITVELQKQIMSELEILYKCDSPY 60

Query: 151 LPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           +   Y  F   +   +  E+  GG  D+Y         R  ++  K              
Sbjct: 61  IIGFYGAFFVENRISICTEFMDGGSLDVYRKIPEHVLGRIAVAVVK-------------- 106

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                                  L YL  + I++RD+KP N+LV   G + L DF +S
Sbjct: 107 ----------------------GLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVS 142

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 40/185 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-AIRKKLHRADMEKVI 142
           D F  L  LG+G+ G V   ++ +   GL     A K++  E   AIR ++ R   E  +
Sbjct: 1   DDFEKLGELGAGNGGVV--TKVLHRPSGL---IMARKLIHLEIKPAIRNQIIR---ELKV 52

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L   + P++   Y  F +     + ME+  GG L      Q  K+ G             
Sbjct: 53  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL-----DQVLKKAGRIPENI------- 100

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLS 261
                LG +   V             L  L YL     I++RD+KP N+LV   G I L 
Sbjct: 101 -----LGKISIAV-------------LRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLC 142

Query: 262 DFDLS 266
           DF +S
Sbjct: 143 DFGVS 147

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 13/107 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG-----------EN 401
           +  +FVGT  ++APEVI    + S  D W+LG+   E+  G  P              +N
Sbjct: 157 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKN 216

Query: 402 NEKTLINILKKPLT-FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK 447
           N  TL     KPL  F    ++    F    K + L  K +V+  KK
Sbjct: 217 NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK-ELLKHKFIVRFAKK 262

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 356 SFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN------------- 401
           + V T  Y  PE++ G + + +AVD W +G    EM       +G++             
Sbjct: 185 NLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCG 244

Query: 402 --NEKTLINILKKP-----LTFPRIGVSSSKEFEEVVKLQ-DLISKLLVKNPKKRIGSLK 453
              E+T       P      +F     +  + F ++     DL+SKLL  +P KR+ +  
Sbjct: 245 TPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASD 304

Query: 454 GSVEIKRHEFF 464
                  H +F
Sbjct: 305 A----LEHPYF 311

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           A + L A++Y+H  GI++RD+K ENVLV     I L DF
Sbjct: 266 ARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDF 304

Length = 461

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 46/187 (24%), Positives = 67/187 (35%), Gaps = 55/187 (29%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
            L+ LGSG  G V+L + R       +   A+K++   A++    +  A     ++  L 
Sbjct: 8   FLKELGSGQFGVVHLGKWRG------KIDVAIKMIREGAMSEDDFIEEAK----VMMKLS 57

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           HP L  LY          +V EY   G L    + + GK                     
Sbjct: 58  HPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGK--------------------- 96

Query: 208 LGFVHTDVTLFFNYRFYAAETLL--------ALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                              E LL        A+EYL   G ++RDL   N LV ED  + 
Sbjct: 97  ----------------LGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVK 140

Query: 260 LSDFDLS 266
           +SDF L+
Sbjct: 141 VSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 38/135 (28%)

Query: 360 THE-----YLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           THE     Y APE++ G + + +AVD W+LG    EM+     F G++    L  I +  
Sbjct: 158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTL 217

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVVKL-----QDLISKLLVKNPKKRI 449
                            KP +FP+    + ++F +VV       +DL+S++L  +P KRI
Sbjct: 218 GTPDEVVWPGVTSLPDYKP-SFPKW---ARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRI 273

Query: 450 GSLKGSVEIKRHEFF 464
            S K ++    H FF
Sbjct: 274 -SAKAALA---HPFF 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 39/163 (23%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244

Query: 414 LT------FPRI-----------GVSSSKEFEEVV-------------KLQDLISKLLVK 443
                    P +           G S  K F +V+             + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304

Query: 444 NPKKRIGSLKGSV-EIKRHEFFKGINWALIRSIKPPEVPNNDL 485
           +  KRI     SV E  +H +             PP++P+  L
Sbjct: 305 DASKRI-----SVDEALQHPYINVWYDPSEAEAPPPKIPDKQL 342

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 223 FYAAETLLALEYLHMMGIVYRDLKPENVLVRE-DGHIMLSDFDLS 266
           FY  + L  L+YLH   IV+RD+K +NVLV    G + +SDF  S
Sbjct: 112 FYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTS 156

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           V E     + + +GT  Y++PE+ S + +    D W LG  +YEM      F  ++    
Sbjct: 151 VLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSL 210

Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +  I++  L  P +    S E      L +LI+ +L K P+KR
Sbjct: 211 VYRIIEGKL--PPMPKDYSPE------LGELIATMLSKRPEKR 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           +  +FVGT  ++APEVI    +    D W+LG+   E+  G  P    +  + L  I K 
Sbjct: 157 KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKN 216

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
             + P +    SK F      ++ +   L K+P+ R      + E+ +H+F
Sbjct: 217 --SPPTLEGQYSKPF------KEFVEACLNKDPRFR----PTAKELLKHKF 255

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 39/186 (20%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DREALAIRKKLHRADMEKVI 142
           ++RL + LG G  G VYLC   +    L     A+K V  D E+    K+++  + E  +
Sbjct: 3   NWRLGKLLGQGAFGRVYLCYDADTGREL-----AVKQVQFDPESPETSKEVNALECEIQL 57

Query: 143 LTMLDHPFLPTLYAEFEASHYSCL--VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           L  L H  +   Y          L   ME+ PGG +     +   K +G  +        
Sbjct: 58  LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSI-----KDQLKSYGALTENVT---- 108

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                R Y  + L  + YLH   IV+RD+K  N+L    G++ L
Sbjct: 109 ---------------------RKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKL 147

Query: 261 SDFDLS 266
            DF  S
Sbjct: 148 GDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 365 APEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINI 409
           APE  S     +  D W+ G+ LYEM  YG  P+ G NN +    I
Sbjct: 172 APEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQI 217

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 9/59 (15%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL---------SFKCDVVPKLLRP 278
           L  L + H   +++RDLKP+N+L+ ++G + L+DF L          +  +VV    RP
Sbjct: 109 LKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRP 167

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 44/199 (22%), Positives = 63/199 (31%), Gaps = 44/199 (22%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADME 139
           V  D   L R LG G  G V+L +  +      +   A+K +   A    RK   R   E
Sbjct: 2   VQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFER---E 58

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL------------YAARQRQPGKR 187
             +LT   H  +   Y          +V EY   GDL            +      P   
Sbjct: 59  AELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGE 118

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
             +S                   +   V +       A+     + YL     V+RDL  
Sbjct: 119 LTLSQ-----------------LLQIAVQI-------AS----GMVYLASQHFVHRDLAT 150

Query: 248 ENVLVREDGHIMLSDFDLS 266
            N LV  D  + + DF +S
Sbjct: 151 RNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 351 NARSKSFVGTHEYLAPEVIS--GQGHGSAVDWWTLGVFLYEMLYGTTPFKGE 400
           N ++ S  G+  ++APEVI    QG+ + VD W+LG  + EM  G  P+  E
Sbjct: 164 NDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE 215

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSA-----VDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           R  SF+GT  ++APEV+  +           D W+LG+ L EM     P    N  + L+
Sbjct: 166 RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL 225

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
            I K     P      SK     ++ +D +   L K+P+ R      + ++  H F   +
Sbjct: 226 KIAKSE---PPTLSQPSK---WSMEFRDFLKTALDKHPETR----PSAAQLLEHPFVSSV 275

Query: 468 N 468
            
Sbjct: 276 T 276

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 33/144 (22%)

Query: 123 DREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQR 182
           +R+A   R +LH        L   DH  +   + +F++     L+MEY  GGDL     +
Sbjct: 106 ERQAAYARSELH-------CLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDL----NK 154

Query: 183 QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY 242
           Q  +R                   +L F   +V L F       + +LAL+ +H   +++
Sbjct: 155 QIKQRLK----------------EHLPFQEYEVGLLF------YQIVLALDEVHSRKMMH 192

Query: 243 RDLKPENVLVREDGHIMLSDFDLS 266
           RDLK  N+ +   G I L DF  S
Sbjct: 193 RDLKSANIFLMPTGIIKLGDFGFS 216

Length = 478

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPK 274
           E L ALE+LH   +++RD+K +NVL+  DG + L+DF   F   + P+
Sbjct: 123 ECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDF--GFCAQITPE 168

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPK 274
           E L AL++LH   +++RD+K +N+L+  DG + L+DF   F   + P+
Sbjct: 123 ECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDF--GFCAQITPE 168

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 33/137 (24%)

Query: 356 SFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN---NEKTLINILK 411
            +V T  Y APE++ S   + +A+D W++G    EML     F G+N     K ++++L 
Sbjct: 170 EYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLG 229

Query: 412 KPLT-----------------FPRIGVSSSKEFEEVV-----KLQDLISKLLVKNPKKRI 449
            P                    PR        + ++      +  DL+S++L  +P++RI
Sbjct: 230 SPSEEVLNRIGSDRVRKYIQNLPRK---QPVPWSKIFPKASPEALDLLSQMLQFDPEERI 286

Query: 450 GSLKGSVEIKRHEFFKG 466
                  +  +H F   
Sbjct: 287 ----TVEQALQHPFLAQ 299

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 220 NYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           +Y  Y  + L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 126 SYLLY--QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 29/130 (22%)

Query: 346 VAEPINARSKSFVGTHEYLAPEV-ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--N 402
           +A   + +   +V T  Y APE+ ++ Q +   VD W+ G    EML G   F G++  N
Sbjct: 154 LARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN 213

Query: 403 EKTLI------------------NILKKPLTFPRIGVSSSKEFEEVVK-----LQDLISK 439
           + ++I                  N L+   + P+        F E  K       DL+ K
Sbjct: 214 QFSIITDLLGTPPDDVINTICSENTLRFVQSLPK---REPVPFSEKFKNADPSAIDLLEK 270

Query: 440 LLVKNPKKRI 449
           +LV +P+KRI
Sbjct: 271 MLVFDPQKRI 280

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 333 DHHDQELLDDPEVVAEPINA---RSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVF 386
           D+ D +L D    VA  I A   + KSF+GT  ++APEV + +   G+    D W +G+ 
Sbjct: 141 DNGDVKLADFG--VAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGIT 198

Query: 387 LYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKN 444
             E+     P    +  + L  + K     P++   +  S  F   VK+       L KN
Sbjct: 199 AIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKIS------LTKN 252

Query: 445 PKKR 448
           PKKR
Sbjct: 253 PKKR 256

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 127 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 134 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 41/183 (22%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
           F L R+LGSG  G V+    +N +        A+K++  +       L + D +K +  +
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVR------VAIKILKSD-----DLLKQQDFQKEVQAL 56

Query: 146 --LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L H  L +L+A         ++ E    G L A  +   G+   ++S      L+   
Sbjct: 57  KRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVAS------LIDM- 109

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                A +    + YL     ++RDL   N+LV ED    ++DF
Sbjct: 110 ---------------------ACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADF 148

Query: 264 DLS 266
            L+
Sbjct: 149 GLA 151

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 22/187 (11%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EK 140
           L   R +  LG    G +Y   +      LP   +A  V  +    I       +   E 
Sbjct: 4   LSAVRFMEELGECAFGKIYKGHLY-----LPGMDHAQLVAIKTLKDINNPQQWGEFQQEA 58

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAAR-QRQPGKRFGISSAKFVFFL 199
            ++  L HP +  L          C++ EY   GDL+     R P    G SS       
Sbjct: 59  SLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSS------- 111

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                 +  G V + +    ++   A +    +EYL     V++DL   N+L+ E  H+ 
Sbjct: 112 ------DEDGTVKSSLD-HGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVK 164

Query: 260 LSDFDLS 266
           +SD  LS
Sbjct: 165 ISDLGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 45/191 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  +G G  G VY  ++ N   G      A+K++D     I       + E  IL
Sbjct: 22  DTWEIIETIGKGTYGKVY--KVTNKKDG---SLAAVKILD----PISDVDEEIEAEYNIL 72

Query: 144 TML-DHPFLPTLYAEF-EASHYS----CLVMEYCPGGDLYAARQ--RQPGKRFGISSAKF 195
             L +HP +   Y  F +A         LV+E C GG +    +     G+R   +    
Sbjct: 73  QSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEA---- 128

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                                   +Y  Y A  LL L++LH   I++RD+K  N+L+  +
Sbjct: 129 ----------------------MISYILYGA--LLGLQHLHNNRIIHRDVKGNNILLTTE 164

Query: 256 GHIMLSDFDLS 266
           G + L DF +S
Sbjct: 165 GGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 57/195 (29%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-----KLHRADME 139
           H + +++LG G+ G+V LC            +  ++    E +A++K       H  D E
Sbjct: 5   HLKFIQQLGKGNFGSVELC-----------RYDPLQDNTGEVVAVKKLQHSTAEHLRDFE 53

Query: 140 KVI--LTMLDHPFLPTLYAEFEASHYSC------LVMEYCPGGDLYAARQRQPGKRFGIS 191
           + I  L  L H  +     +++   YS       LVMEY P G L    Q+   +     
Sbjct: 54  REIEILKSLQHDNI----VKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRK 109

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
                  LL                       YA++    +EYL     V+RDL   N+L
Sbjct: 110 ------LLL-----------------------YASQICKGMEYLGSKRYVHRDLATRNIL 140

Query: 252 VREDGHIMLSDFDLS 266
           V  +  + + DF L+
Sbjct: 141 VESENRVKIGDFGLT 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 226 AETLLALEYLHMMGIVYRDLKPENVLVREDG---HIMLSDFDLS 266
            + L AL   H  GIV+RDLKP+N++V + G   H  + DF + 
Sbjct: 86  LQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIG 129

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 43/182 (23%)

Query: 86  FRLLRRLGSGDIGNVYLCQ-IR-NPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           F  LR +G G  G VY  + +R N +V + +  Y+ K  + +   I K++         L
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVK-------FL 79

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLF 201
             + HP        +   H + LVMEYC G   DL     ++P +   I++         
Sbjct: 80  QRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAA--------- 129

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                     H                L  L YLH   +++RD+K  N+L+ E G + L+
Sbjct: 130 --------ITHG--------------ALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLA 167

Query: 262 DF 263
           DF
Sbjct: 168 DF 169

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 225 AAETLLALEYL-HMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           A  T+ AL YL   + I++RD+KP N+L+  +G+I L DF +S
Sbjct: 113 AVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN 401
            ++  S VGT  Y  PE++  + +G   D W  G  LY+M     PF   N
Sbjct: 167 ESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN 217

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           L AL  LH  G+++RD+K +++L+  DG + LSDF
Sbjct: 126 LKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 56/185 (30%), Positives = 78/185 (42%), Gaps = 40/185 (21%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP 149
           R LGSG  G V LC  R   V   + F A+KVVD E ++   K  RA  E   L   D  
Sbjct: 38  RVLGSGATGTV-LCAKR---VSDGEPF-AVKVVDMEGMSEADKN-RAQAEVCCLLNCDFF 91

Query: 150 FLPTLYAEF--------EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
            +   + +F        E      LV++Y   GDL     RQ  K    S AK       
Sbjct: 92  SIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDL-----RQEIK----SRAK------- 135

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                N  F   +  L F       + LLA+ ++H   +++RD+K  N+L+  +G + L 
Sbjct: 136 ----TNRTFREHEAGLLF------IQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLG 185

Query: 262 DFDLS 266
           DF  S
Sbjct: 186 DFGFS 190

Length = 496

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 47/187 (25%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA------LAIRKKLHRADME 139
           F+ L +LG G    VY  + RN   G      A+K +  +A       AIR        E
Sbjct: 2   FKQLEKLGEGTYATVY--KGRNRTTGE---IVALKEIHLDAEEGTPSTAIR--------E 48

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             ++  L H  +  L+      +   LV EY    DL         K++  +        
Sbjct: 49  ISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK-DL---------KKYMDT-------- 90

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                +   G +  +    F Y+      L  + + H   +++RDLKP+N+L+ + G + 
Sbjct: 91  -----HGVRGALDPNTVKSFTYQL-----LKGIAFCHENRVLHRDLKPQNLLINKRGELK 140

Query: 260 LSDFDLS 266
           L+DF L+
Sbjct: 141 LADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 41/188 (21%)

Query: 83  LDHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           L +FR+ +++G G    VY   C +    V L +      ++D +A        RAD  K
Sbjct: 1   LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKK-VQIFDLMDAKA--------RADCIK 51

Query: 141 VI--LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVF 197
            I  L  L+HP +   YA F   +   +V+E    GDL    +  +  KR       + +
Sbjct: 52  EIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKY 111

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
           F+                           +   ALE++H   +++RD+KP NV +   G 
Sbjct: 112 FV---------------------------QLCSALEHMHSRRVMHRDIKPANVFITATGV 144

Query: 258 IMLSDFDL 265
           + L D  L
Sbjct: 145 VKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 231 ALEYL---HMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           AL YL   H  G+++RD+KP N+L+   G++ L DF +S
Sbjct: 126 ALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVP 273
           L AL YLH  GI++RD+K EN+ + E  + +L DF  + K D  P
Sbjct: 195 LEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHP 239

Length = 392

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 23/116 (19%)

Query: 357 FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKK 412
           +V T  Y APE++ +   + +A+D W++G    E+L     F G+   +  K +  +L  
Sbjct: 168 YVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGS 227

Query: 413 P----LTF-------------PRI-GVSSSKEFEEVVKLQ-DLISKLLVKNPKKRI 449
           P    L F             P     S ++ F     L  DL+ K+LV +P KRI
Sbjct: 228 PSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRI 283

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 43/179 (24%)

Query: 89  LRRLGSGDIGNVYLC--QIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML 146
           L  +G G  G VY       N +V + +  Y+ K  + +   I K++         L  L
Sbjct: 26  LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVK-------FLQQL 78

Query: 147 DHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
            HP        +   H + LVMEYC G   DL     ++P +   I++            
Sbjct: 79  KHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAA------------ 125

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                  H                L  L YLH   +++RD+K  N+L+ E G + L+DF
Sbjct: 126 -----ITHG--------------ALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADF 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 28/131 (21%)

Query: 358 VGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK----- 411
           V T  Y APE++ G     +A+D W++G    E+L     F G++    L  I K     
Sbjct: 167 VVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTP 226

Query: 412 --------------KPLTFPR-IGVSSSKEFEEVVKLQ---DLISKLLVKNPKKRIGSLK 453
                         K  TF +       K+F  +       DL+++LL  +P KRI +  
Sbjct: 227 TEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAE- 285

Query: 454 GSVEIKRHEFF 464
              +  +H +F
Sbjct: 286 ---DALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           Y  + L  + + H   +++RDLKP+N+L+   G I L+DF L+
Sbjct: 106 YLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
           F L+ F Y+   F   D  L    R    + L A+EY+H   +++RD+K EN+ +  DG 
Sbjct: 247 FDLYSFMYDE-AFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGK 305

Query: 258 IMLSDF 263
           I+L DF
Sbjct: 306 IVLGDF 311

Length = 501

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           VGT +Y+APE + G     + D + LGV LY+ML  + P++ +   K      +  +  P
Sbjct: 192 VGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI---SYRDVILSP 248

Query: 418 RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
            I V+  +E      L  +  K L  +P +R  S++
Sbjct: 249 -IEVAPYREIPPF--LSQIAMKALAVDPAERYSSVQ 281

Length = 932

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 41/177 (23%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD--REALAIRKKLHRADMEKV-ILTMLDH 148
           LG+G   + Y  Q R+   G      A+K V   R   + ++++  A  +++ ++  L+H
Sbjct: 8   LGTGAFSSCY--QARDVKTG---TLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNH 62

Query: 149 PFLPTLY-AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           P +  +  A  E SH++ L +E+  GG               +S       LL     + 
Sbjct: 63  PHIIRMLGATCEDSHFN-LFVEWMAGG--------------SVSH------LL-----SK 96

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM-LSDF 263
            G     V +      Y  + L  L YLH   I++RD+K  N+L+   G  + ++DF
Sbjct: 97  YGAFKEAVIIN-----YTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADF 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           E L  L +LH   +++RD+K +NVL+ E+  + L DF +S + D
Sbjct: 119 EILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD 162

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           L  L+YLH  GI++RD+KP N+LV  +  + + DF L+
Sbjct: 113 LRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLA 150

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
           Y  + L  + Y H   +++RDLKP+N+L+  +G + L+DF L
Sbjct: 104 YLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAV-----DWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            R  +F+GT  ++APEVI+   +  A      D W+LG+   EM  G  P    +  + L
Sbjct: 176 GRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRAL 235

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             I + P   P++    SK++ +  K  D I   LVKN   R
Sbjct: 236 FLIPRNPP--PKL---KSKKWSK--KFIDFIEGCLVKNYLSR 270

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           E L  L +LH   +++RD+K +NVL+ E+  + L DF +S + D
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD 172

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 41/187 (21%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV--DREALAIRKKLHRADMEKVI 142
           ++RL + LG G  G VYLC   +    L     A+K V  D ++    K+++  + E  +
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYDADTGREL-----AVKQVPFDPDSQETSKEVNALECEIQL 57

Query: 143 LTMLDHPFLPTLYA---EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           L  L H  +   Y    + E    S  V EY PGG +     +   K +G  +       
Sbjct: 58  LKNLRHDRIVQYYGCLRDPEEKKLSIFV-EYMPGGSI-----KDQLKAYGALTENVT--- 108

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 R Y  + L  + YLH   IV+RD+K  N+L    G++ 
Sbjct: 109 ----------------------RRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVK 146

Query: 260 LSDFDLS 266
           L DF  S
Sbjct: 147 LGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 27/109 (24%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAV------DWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +K+ +G   Y+APE I   G           D W+LG+ + EM  G  P+  E    T  
Sbjct: 158 AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPE----TYA 213

Query: 408 NILKK--------PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           NI  +        P T P  G S           QD ++K L K P +R
Sbjct: 214 NIFAQLSAIVDGDPPTLPS-GYSDDA--------QDFVAKCLNKIPNRR 253

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 26/181 (14%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
           L+R LG G  G VY    +  + G P+   A+K V+ E  ++R+++     E  ++   +
Sbjct: 10  LIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN-ENASMRERIEFL-NEASVMKEFN 67

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLLFFFFY 205
              +  L         + +VME    GDL  Y  R R+P                     
Sbjct: 68  CHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYL-RSRRPEAENN---------------- 110

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
             LG        F      AAE    + YL     V+RDL   N +V ED  + + DF +
Sbjct: 111 PGLGPPTLQ--KFIQM---AAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGM 165

Query: 266 S 266
           +
Sbjct: 166 T 166

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.97
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.96
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.94
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.94
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.94
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.93
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.93
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.91
PRK12274	218	serine/threonine protein kinase; Provisional	99.9
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.9
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.89
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.89
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.89
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.88
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.87
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
PRK10345	210	hypothetical protein; Provisional	99.85
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.83
smart00090	237	RIO RIO-like kinase.	99.81
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.81
PRK14879	211	serine/threonine protein kinase; Provisional	99.8
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.8
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.79
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.78
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.75
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.72
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.71
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.65
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.57
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.51
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.47
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.46
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.42
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.42
KOG1243	690	consensus Protein kinase [General function predict	99.39
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.32
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.32
KOG3087	229	consensus Serine/threonine protein kinase [General	99.23
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.11
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.06
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.01
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.97
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.82
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.77
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.76
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.74
COG4248	637	Uncharacterized protein with protein kinase and he	98.68
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.59
PRK09902	216	hypothetical protein; Provisional	98.52
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.43
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.43
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.36
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.34
PF01636	239	APH: Phosphotransferase enzyme family This family	98.3
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.27
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.2
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.1
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.01
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.91
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.88
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.88
PLN02876	822	acyl-CoA dehydrogenase	97.86
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.83
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.82
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.74
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.68
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.66
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.59
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.58
PRK10593	297	hypothetical protein; Provisional	97.58
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.51
PRK05231	319	homoserine kinase; Provisional	97.46
PLN02236	344	choline kinase	97.37
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	97.22
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.98
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.93
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.9
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.9
PLN02756	418	S-methyl-5-thioribose kinase	96.75
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.36
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.34
PTZ00384	383	choline kinase; Provisional	96.3
PRK12396	409	5-methylribose kinase; Reviewed	96.09
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	95.98
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	95.89
COG2334	331	Putative homoserine kinase type II (protein kinase	95.87
KOG2270	520	consensus Serine/threonine protein kinase involved	95.79
PTZ00296	442	choline kinase; Provisional	95.26
PRK06148	1013	hypothetical protein; Provisional	95.25
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	95.12
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	95.06
PRK11768	325	serine/threonine protein kinase; Provisional	94.97
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.39

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.1e-68  Score=505.78  Aligned_cols=369  Identities=62%  Similarity=1.077  Sum_probs=306.3

Q ss_pred             cCCCCCCccHHHHHHHHHHH-hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHh
Q 010140           56 NSHKPHKANQAAWEAMKRLR-RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH  134 (517)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~  134 (517)
                      ...++|..+...|+++..++ .....+.+++|++++.||.|.-|+||+|+.++     +++.+|+|++.++.+..++++.
T Consensus        48 ~~~kph~~~d~~w~a~~~~~~~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~-----t~~~fAmKVmdK~~l~~rkKl~  122 (459)
T KOG0610|consen   48 SGNKPHKGNDVRWEAISSIRNSKDGSLGLRHFRLLKRLGCGDIGTVYLVELRG-----TNCLFAMKVMDKESLASRKKLK  122 (459)
T ss_pred             ccCCCCCCCchhhhhhccccccCCCccCHHHHHHHHHcCCCCceeEEEEEecC-----CCceEEEEEecHHHHhhhhHHH
Confidence            34567777777888877766 46678899999999999999999999999998     6799999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCcccccc
Q 010140          135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTD  214 (517)
Q Consensus       135 ~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  214 (517)
                      +++.|.+||+.++||.++.||..|+.+++.|||||||+||||..++++++.+.+++..++                    
T Consensus       123 Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aR--------------------  182 (459)
T KOG0610|consen  123 RAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAAR--------------------  182 (459)
T ss_pred             HHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHH--------------------
Confidence            999999999999999999999999999999999999999999999999999988887765                    


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCC
Q 010140          215 VTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIP  294 (517)
Q Consensus       215 ~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (517)
                              +|+++++.||+|||-.|||.||||||||||.++|+|.|+||.|+..+...+.........      .....+
T Consensus       183 --------FYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~------~~~~~~  248 (459)
T KOG0610|consen  183 --------FYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPR------SSGSQP  248 (459)
T ss_pred             --------HHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCC------CCCCCc
Confidence                    899999999999999999999999999999999999999999998886655554321100      001123


Q ss_pred             CCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC
Q 010140          295 SCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH  374 (517)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~  374 (517)
                      +|..   .-.+|+.+.......+++.....           ..  ...++..+++.+.+..+++||-.|+|||++.|.++
T Consensus       249 ~~~~---~~~s~f~~r~~~~~~~~~k~~~~-----------~~--~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GH  312 (459)
T KOG0610|consen  249 SCRS---RQPSCFSPRCLSSSKKRKKKDES-----------AS--RSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGH  312 (459)
T ss_pred             cccc---ccccccccchhcccccccccccc-----------cc--ccchhhhcCCCCccccccccccccccceeeecCCC
Confidence            3332   11233333322221111110000           00  12233456778889999999999999999999999


Q ss_pred             CccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          375 GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       375 ~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      +.++|+|+|||++|||+.|.+||.|.+..+.+.+|+..+..+|......       ..++|||+++|.+||.+|++...+
T Consensus       313 gsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs-------~~akDLIr~LLvKdP~kRlg~~rG  385 (459)
T KOG0610|consen  313 GSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVS-------SAAKDLIRKLLVKDPSKRLGSKRG  385 (459)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcch-------hHHHHHHHHHhccChhhhhccccc
Confidence            9999999999999999999999999999999999999999998765222       358999999999999999998888


Q ss_pred             hHHhhcCCCcCCCCcccccCCCCCCCCCCccc
Q 010140          455 SVEIKRHEFFKGINWALIRSIKPPEVPNNDLY  486 (517)
Q Consensus       455 ~~ell~hp~f~~~~~~~~~~~~p~~~~~~~~~  486 (517)
                      +.||++||||++++|+.|+...||++|.....
T Consensus       386 A~eIK~HpFF~gVnWaLir~~~PP~iP~~~d~  417 (459)
T KOG0610|consen  386 AAEIKRHPFFEGVNWALIRCARPPEIPKPVDG  417 (459)
T ss_pred             hHHhhcCccccCCChhheeccCCCcCCCcccc
Confidence            89999999999999999999999999886443

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.8e-65  Score=502.57  Aligned_cols=349  Identities=35%  Similarity=0.630  Sum_probs=269.8

Q ss_pred             HHHhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcc
Q 010140           73 RLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        73 ~~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv  152 (517)
                      .++.+..++..++|++++.||+|+||.||+|+.+.     ++..||+|++++..+....++..+..|..||...++|+||
T Consensus       130 ~lR~~R~r~~~~DFe~Lk~IgkGAfGeVrLarKk~-----Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vV  204 (550)
T KOG0605|consen  130 YLRLRRTRLSLDDFELLKVIGKGAFGEVRLARKKD-----TGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVV  204 (550)
T ss_pred             HHHhccccCCcccchhheeeccccceeEEEEEEcc-----CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEE
Confidence            45667778999999999999999999999999998     8999999999999999999999999999999999999999


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      +||..|++..++||||||++|||+..+|.+.  ..+++..                            .|+|+.+++.|+
T Consensus       205 KLyYsFQD~~~LYLiMEylPGGD~mTLL~~~--~~L~e~~----------------------------arfYiaE~vlAI  254 (550)
T KOG0605|consen  205 KLYYSFQDKEYLYLIMEYLPGGDMMTLLMRK--DTLTEDW----------------------------ARFYIAETVLAI  254 (550)
T ss_pred             EEEEEecCCCeeEEEEEecCCccHHHHHHhc--CcCchHH----------------------------HHHHHHHHHHHH
Confidence            9999999999999999999999999998765  3333333                            358999999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      +-||+.|+|||||||+|+|||..|++||+|||||..+.......          .+.      ....++..++....   
T Consensus       255 ~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~----------~~~------~~~~~~~~~~~~~~---  315 (550)
T KOG0605|consen  255 ESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIE----------SYR------LDEQMQINLSEAKP---  315 (550)
T ss_pred             HHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhh----------hhc------chhhhhhhhccCCC---
Confidence            99999999999999999999999999999999995443211100          000      00000000000000   


Q ss_pred             ccccccccccccccccccCCCCCCccccCCcccc---ccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVV---AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                              ......       .......+.....   .........+.+|||.|||||++.+.+|+..+|+|||||||||
T Consensus       316 --------~~~~~~-------~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyE  380 (550)
T KOG0605|consen  316 --------SDFPKF-------NTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYE  380 (550)
T ss_pred             --------cccccc-------ccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHH
Confidence                    000000       0000000000000   0111122346799999999999999999999999999999999


Q ss_pred             HhhCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          390 MLYGTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       390 lltG~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||.|.+||.+.++.+.+.+|+...  +.+|.....+       .+++|||.+||. ||++|++ ..+++||++||||+++
T Consensus       381 mLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s-------~eA~DLI~rll~-d~~~RLG-~~G~~EIK~HPfF~~v  451 (550)
T KOG0605|consen  381 MLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLS-------DEAKDLITRLLC-DPENRLG-SKGAEEIKKHPFFKGV  451 (550)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCccc-------HHHHHHHHHHhc-CHHHhcC-cccHHHHhcCCccccC
Confidence            999999999999999999999765  5666554443       358999999999 9999999 4789999999999999


Q ss_pred             CcccccCCCCCCCCCCccccccccccccCCCCccc
Q 010140          468 NWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQE  502 (517)
Q Consensus       468 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  502 (517)
                      +|+.|+...||++|...   .+....+..++...+
T Consensus       452 ~W~~l~~~~apfvP~v~---~~~DT~yFddF~e~~  483 (550)
T KOG0605|consen  452 DWDHLREMPAPFVPQVN---SELDTQYFDDFPEED  483 (550)
T ss_pred             CcchhhcCCCCCCCCCC---CcccccccccCcccc
Confidence            99999999999998743   334444555555443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-64  Score=479.24  Aligned_cols=282  Identities=43%  Similarity=0.784  Sum_probs=250.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|+++++||+|+||+||+++.++     +++.||+|++++......+...+...|..||..++||+||+++..|++
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~d-----t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt   96 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKD-----TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT   96 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcc-----cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc
Confidence            456899999999999999999999997     889999999999988888888999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+.+|||+||+.||+|+..|++.  ..+.+..+                            |+|+.+|+.||.|||++||
T Consensus        97 ~~kLylVld~~~GGeLf~hL~~e--g~F~E~~a----------------------------rfYlaEi~lAL~~LH~~gI  146 (357)
T KOG0598|consen   97 EEKLYLVLDYLNGGELFYHLQRE--GRFSEDRA----------------------------RFYLAEIVLALGYLHSKGI  146 (357)
T ss_pred             CCeEEEEEeccCCccHHHHHHhc--CCcchhHH----------------------------HHHHHHHHHHHHHHHhCCe
Confidence            99999999999999999999875  44554444                            4889999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||||||||+.+|+++|+|||+|+....                                                 
T Consensus       147 iyRDlKPENILLd~~GHi~LtDFgL~k~~~~-------------------------------------------------  177 (357)
T KOG0598|consen  147 IYRDLKPENILLDEQGHIKLTDFGLCKEDLK-------------------------------------------------  177 (357)
T ss_pred             eeccCCHHHeeecCCCcEEEeccccchhccc-------------------------------------------------
Confidence            9999999999999999999999999843110                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                   .+....++|||+.|||||++.+.+|+..+|+|||||++|||++|.+||.+.
T Consensus       178 -----------------------------~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~  228 (357)
T KOG0598|consen  178 -----------------------------DGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE  228 (357)
T ss_pred             -----------------------------CCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc
Confidence                                         122345689999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPP  478 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~~p~  478 (517)
                      +....+.+|..+....+.....        .++++||.++|..||++|+++...+.++.+||||++++|+.+  +.+.||
T Consensus       229 ~~~~~~~~I~~~k~~~~p~~ls--------~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~Pp  300 (357)
T KOG0598|consen  229 DVKKMYDKILKGKLPLPPGYLS--------EEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLSPP  300 (357)
T ss_pred             cHHHHHHHHhcCcCCCCCccCC--------HHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCCCC
Confidence            9999999999988444433211        148999999999999999987777889999999999999966  778899


Q ss_pred             CCCCC
Q 010140          479 EVPNN  483 (517)
Q Consensus       479 ~~~~~  483 (517)
                      +.|+.
T Consensus       301 F~P~~  305 (357)
T KOG0598|consen  301 FKPNV  305 (357)
T ss_pred             eecCC
Confidence            88874

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-63  Score=451.43  Aligned_cols=276  Identities=43%  Similarity=0.805  Sum_probs=254.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ..+++|++++.||.|+||.|.+++.+.     ++..||+|++.+......++.++...|..+|+.+.||++++|++.|.+
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~-----~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d  115 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKH-----SGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD  115 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEcc-----CCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc
Confidence            778999999999999999999999998     789999999999999888899999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+++||||||++||.|..++++.  ++++++.++                            +|++||+.||+|||+++|
T Consensus       116 ~~~lymvmeyv~GGElFS~Lrk~--~rF~e~~ar----------------------------FYAAeivlAleylH~~~i  165 (355)
T KOG0616|consen  116 NSNLYMVMEYVPGGELFSYLRKS--GRFSEPHAR----------------------------FYAAEIVLALEYLHSLDI  165 (355)
T ss_pred             CCeEEEEEeccCCccHHHHHHhc--CCCCchhHH----------------------------HHHHHHHHHHHHHHhcCe
Confidence            99999999999999999999875  566665554                            899999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ++|||||||||||.+|++||+|||+|+...                                                  
T Consensus       166 iYRDLKPENiLlD~~G~iKitDFGFAK~v~--------------------------------------------------  195 (355)
T KOG0616|consen  166 IYRDLKPENLLLDQNGHIKITDFGFAKRVS--------------------------------------------------  195 (355)
T ss_pred             eeccCChHHeeeccCCcEEEEeccceEEec--------------------------------------------------
Confidence            999999999999999999999999996533                                                  


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .++-+.||||.|+|||++...+|+.++|+|||||++|||+.|.+||.+.
T Consensus       196 -------------------------------~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~  244 (355)
T KOG0616|consen  196 -------------------------------GRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDD  244 (355)
T ss_pred             -------------------------------CcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCC
Confidence                                           2345779999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      +...++.+|+.+...+|.....         +++|||.++|+.|-.+|.+..+ +..+|++||||++++|..+  +.+.|
T Consensus       245 ~~~~iY~KI~~~~v~fP~~fs~---------~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r~ie~  315 (355)
T KOG0616|consen  245 NPIQIYEKILEGKVKFPSYFSS---------DAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQRKIEP  315 (355)
T ss_pred             ChHHHHHHHHhCcccCCcccCH---------HHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccccHHHHhhccccC
Confidence            9999999999999999976554         4899999999999999977654 7789999999999999977  67889


Q ss_pred             CCCC
Q 010140          478 PEVP  481 (517)
Q Consensus       478 ~~~~  481 (517)
                      |++|
T Consensus       316 P~~p  319 (355)
T KOG0616|consen  316 PFEP  319 (355)
T ss_pred             CCCC
Confidence            9888

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-62  Score=482.15  Aligned_cols=288  Identities=37%  Similarity=0.603  Sum_probs=252.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .....+|.+++.||.|+|++|++|+.+.     +++.|||||+.+..+...++...+.+|..+|.+| +||.|++||..|
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~-----t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TF  143 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKA-----TGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTF  143 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecC-----CCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEe
Confidence            5667899999999999999999999998     7899999999999998888899999999999999 899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      +++..+|+|+||+++|+|.++|.+.  +.+.+                            ...|+|++||+.||+|||++
T Consensus       144 QD~~sLYFvLe~A~nGdll~~i~K~--Gsfde----------------------------~caR~YAAeIldAleylH~~  193 (604)
T KOG0592|consen  144 QDEESLYFVLEYAPNGDLLDLIKKY--GSFDE----------------------------TCARFYAAEILDALEYLHSN  193 (604)
T ss_pred             ecccceEEEEEecCCCcHHHHHHHh--CcchH----------------------------HHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999886  33333                            23368999999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||||||||||+.+|++||+|||.|+.++........                 |                      
T Consensus       194 GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~-----------------~----------------------  234 (604)
T KOG0592|consen  194 GIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQEN-----------------P----------------------  234 (604)
T ss_pred             CceeccCChhheeEcCCCcEEEeeccccccCChhhccccC-----------------c----------------------
Confidence            9999999999999999999999999999776532211000                 0                      


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                ........+..+++||..|.+||+|.....++.+|||+||||||+|+.|.+||.
T Consensus       235 --------------------------~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFr  288 (604)
T KOG0592|consen  235 --------------------------VDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFR  288 (604)
T ss_pred             --------------------------cCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCc
Confidence                                      000011222467999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      +.++..++++|+...+.||.....         .++|||.++|..||.+|+|+.    ||++||||.++||+.+..+.||
T Consensus       289 a~NeyliFqkI~~l~y~fp~~fp~---------~a~dLv~KLLv~dp~~Rlt~~----qIk~HpFF~~Vdw~nlw~~~PP  355 (604)
T KOG0592|consen  289 AANEYLIFQKIQALDYEFPEGFPE---------DARDLIKKLLVRDPSDRLTSQ----QIKAHPFFEGVDWENLWQQTPP  355 (604)
T ss_pred             cccHHHHHHHHHHhcccCCCCCCH---------HHHHHHHHHHccCccccccHH----HHhhCcccccCChhhhhhcCCC
Confidence            999999999999999998875542         489999999999999999997    9999999999999999999888


Q ss_pred             CC
Q 010140          479 EV  480 (517)
Q Consensus       479 ~~  480 (517)
                      .+
T Consensus       356 ~l  357 (604)
T KOG0592|consen  356 KL  357 (604)
T ss_pred             cc
Confidence            65

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-59  Score=475.14  Aligned_cols=282  Identities=41%  Similarity=0.760  Sum_probs=251.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~  157 (517)
                      ..+.+++|.++++||+|+||+|+++..+.     +++.||||+++++....++.++....|.+|+.... ||.++.|+.+
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~-----~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~  437 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKG-----TNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSC  437 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcC-----CCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccc
Confidence            56889999999999999999999999998     78899999999998888888999999999999885 9999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |+..+++|+||||+.|||+..+.+.   ..+.+.                            ..++|++.|+.||+|||+
T Consensus       438 fQT~~~l~fvmey~~Ggdm~~~~~~---~~F~e~----------------------------rarfyaAev~l~L~fLH~  486 (694)
T KOG0694|consen  438 FQTKEHLFFVMEYVAGGDLMHHIHT---DVFSEP----------------------------RARFYAAEVVLGLQFLHE  486 (694)
T ss_pred             cccCCeEEEEEEecCCCcEEEEEec---ccccHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence            9999999999999999996443322   334333                            345899999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||+||||.+|||+|.+|++||+|||+++.-.                                               
T Consensus       487 ~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m-----------------------------------------------  519 (694)
T KOG0694|consen  487 NGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM-----------------------------------------------  519 (694)
T ss_pred             cCceeeecchhheEEcccCcEEecccccccccC-----------------------------------------------
Confidence            999999999999999999999999999984311                                               


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     ..+.+++++||||.|||||++.+..|+.++|+|||||+||||+.|..||
T Consensus       520 -------------------------------~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF  568 (694)
T KOG0694|consen  520 -------------------------------GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPF  568 (694)
T ss_pred             -------------------------------CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCC
Confidence                                           1234678899999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RS  474 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~  474 (517)
                      .|+++++++..|+.....+|.....         ++.++|++||.+||++|+++. ..+.+|++||||++|+|+.+  +.
T Consensus       569 ~gddEee~FdsI~~d~~~yP~~ls~---------ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L~~r~  639 (694)
T KOG0694|consen  569 PGDDEEEVFDSIVNDEVRYPRFLSK---------EAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDDLLNRR  639 (694)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCcccH---------HHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHHHhhcc
Confidence            9999999999999999988875533         589999999999999999983 34579999999999999977  77


Q ss_pred             CCCCCCCCC
Q 010140          475 IKPPEVPNN  483 (517)
Q Consensus       475 ~~p~~~~~~  483 (517)
                      +.||+.|..
T Consensus       640 i~PPf~P~i  648 (694)
T KOG0694|consen  640 IKPPFVPTI  648 (694)
T ss_pred             CCCCCCccc
Confidence            999999874

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-60  Score=455.46  Aligned_cols=277  Identities=29%  Similarity=0.437  Sum_probs=228.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH----HHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI----RKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..+.|.+.+.||+|+||.|-+|..+.     +++.||||++.+.....    ......+.+|++||++|+|||||+++++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~-----tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~  244 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKK-----TGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDF  244 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcc-----cCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeee
Confidence            34679999999999999999999998     88999999998876543    2234556789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |+..+..||||||++||+|.+.+-.+.  .+.+...                            +.+++||+.||.|||+
T Consensus       245 f~~~ds~YmVlE~v~GGeLfd~vv~nk--~l~ed~~----------------------------K~~f~Qll~avkYLH~  294 (475)
T KOG0615|consen  245 FEVPDSSYMVLEYVEGGELFDKVVANK--YLREDLG----------------------------KLLFKQLLTAVKYLHS  294 (475)
T ss_pred             eecCCceEEEEEEecCccHHHHHHhcc--ccccchh----------------------------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999987763  3333333                            3567999999999999


Q ss_pred             cCceeccCCCCceEEccC---CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          238 MGIVYRDLKPENVLVRED---GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~---~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      +||+||||||+|||+..+   -.+||+|||+|+...                                            
T Consensus       295 ~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g--------------------------------------------  330 (475)
T KOG0615|consen  295 QGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG--------------------------------------------  330 (475)
T ss_pred             cCcccccCCcceEEeccCCcceEEEecccchhhccc--------------------------------------------
Confidence            999999999999999866   689999999995432                                            


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC---CccchHHHHHHHHHHHh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH---GSAVDWWTLGVFLYEML  391 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~---~~~~DiWSlGvil~ell  391 (517)
                                                         ......++||||.|.|||++.+..+   ..++|||||||+||-++
T Consensus       331 -----------------------------------~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcL  375 (475)
T KOG0615|consen  331 -----------------------------------EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCL  375 (475)
T ss_pred             -----------------------------------cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEe
Confidence                                               1234567899999999999987753   45889999999999999


Q ss_pred             hCCCCCCCCChHH-HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          392 YGTTPFKGENNEK-TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       392 tG~~Pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +|.+||.+..... +..+|.++.+.+-...     +.+...+.++||.+||..||++||++.    |+|+||||+.++..
T Consensus       376 sG~pPFS~~~~~~sl~eQI~~G~y~f~p~~-----w~~Iseea~dlI~~mL~VdP~~R~s~~----eaL~hpW~~~~~~~  446 (475)
T KOG0615|consen  376 SGYPPFSEEYTDPSLKEQILKGRYAFGPLQ-----WDRISEEALDLINWMLVVDPENRPSAD----EALNHPWFKDAPCL  446 (475)
T ss_pred             ccCCCcccccCCccHHHHHhcCcccccChh-----hhhhhHHHHHHHHHhhEeCcccCcCHH----HHhcChhhhccccc
Confidence            9999999877655 7888888887765332     234455799999999999999999998    99999999987643


Q ss_pred             c----ccCCCCCCCC
Q 010140          471 L----IRSIKPPEVP  481 (517)
Q Consensus       471 ~----~~~~~p~~~~  481 (517)
                      .    +..+.|+...
T Consensus       447 s~~~~l~~~~~l~~~  461 (475)
T KOG0615|consen  447 SKQDILKKLQPLSIE  461 (475)
T ss_pred             chHHHHhhcCccccc
Confidence            2    2444454443

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-58  Score=460.40  Aligned_cols=256  Identities=32%  Similarity=0.518  Sum_probs=233.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      .+|...+.||+|||+.||.+++..     ++..||+|++.+..+......+.+.+|++|.+.|+|||||+++++|++.++
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~-----tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~n   92 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLD-----TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNN   92 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcC-----CCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCc
Confidence            469999999999999999999977     789999999999888888888899999999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||+|+|+.++|..++++.  +.+.+.+++                            +|++||+.||.|||+++||||
T Consensus        93 VYivLELC~~~sL~el~Krr--k~ltEpEar----------------------------y~l~QIv~GlkYLH~~~IiHR  142 (592)
T KOG0575|consen   93 VYIVLELCHRGSLMELLKRR--KPLTEPEAR----------------------------YFLRQIVEGLKYLHSLGIIHR  142 (592)
T ss_pred             eEEEEEecCCccHHHHHHhc--CCCCcHHHH----------------------------HHHHHHHHHHHHHHhcCceec
Confidence            99999999999999998854  556665554                            889999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||..|+||+++.+|||+|||||..+..                                                    
T Consensus       143 DLKLGNlfL~~~~~VKIgDFGLAt~le~----------------------------------------------------  170 (592)
T KOG0575|consen  143 DLKLGNLFLNENMNVKIGDFGLATQLEY----------------------------------------------------  170 (592)
T ss_pred             ccchhheeecCcCcEEecccceeeeecC----------------------------------------------------
Confidence            9999999999999999999999954432                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                ...+..+.||||.|.|||++....++..+||||+||+||.||+|++||...+..
T Consensus       171 --------------------------~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vk  224 (592)
T KOG0575|consen  171 --------------------------DGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVK  224 (592)
T ss_pred             --------------------------cccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHH
Confidence                                      124566889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +.+.+|....+.+|....         .+++|||.+||+.||.+||++.    ++|.|+||+
T Consensus       225 ety~~Ik~~~Y~~P~~ls---------~~A~dLI~~lL~~~P~~Rpsl~----~vL~h~Ff~  273 (592)
T KOG0575|consen  225 ETYNKIKLNEYSMPSHLS---------AEAKDLIRKLLRPNPSERPSLD----EVLDHPFFK  273 (592)
T ss_pred             HHHHHHHhcCcccccccC---------HHHHHHHHHHhcCCcccCCCHH----HHhcCHhhh
Confidence            999999999999887332         2489999999999999999998    999999993

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-56  Score=423.18  Aligned_cols=260  Identities=30%  Similarity=0.436  Sum_probs=220.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++.+.++.||+|..|+||+|+++.     +++.+|+|++..+.  .....+++.+|+++++.++||+||++|+.|.+
T Consensus        76 i~~~dle~~~~lG~G~gG~V~kv~Hk~-----t~~i~AlK~I~~~~--~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~  148 (364)
T KOG0581|consen   76 ISLSDLERLGVLGSGNGGTVYKVRHKP-----TGKIYALKVILLNI--DPALQKQILRELEILRSCQSPYIVGFYGAFYS  148 (364)
T ss_pred             cCHHHhhhhhhcccCCCcEEEEEEEcC-----CCeEEEEEeecccC--CHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe
Confidence            556788999999999999999999998     78999999994331  23455678889999999999999999999999


Q ss_pred             Cce-eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-c
Q 010140          161 SHY-SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-M  238 (517)
Q Consensus       161 ~~~-~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~  238 (517)
                      ++. .+|+||||.||+|..++...  +++++...                            ..++.+|++||.|||+ +
T Consensus       149 ~~~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L----------------------------~~ia~~VL~GL~YLh~~~  198 (364)
T KOG0581|consen  149 NGEEISICMEYMDGGSLDDILKRV--GRIPEPVL----------------------------GKIARAVLRGLSYLHEER  198 (364)
T ss_pred             CCceEEeehhhcCCCCHHHHHhhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHhhcc
Confidence            884 99999999999999988764  33333322                            3788999999999995 9


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      +||||||||+||||+..|.|||||||.|+.+.                                                
T Consensus       199 ~IIHRDIKPsNlLvNskGeVKicDFGVS~~lv------------------------------------------------  230 (364)
T KOG0581|consen  199 KIIHRDIKPSNLLVNSKGEVKICDFGVSGILV------------------------------------------------  230 (364)
T ss_pred             CeeeccCCHHHeeeccCCCEEeccccccHHhh------------------------------------------------
Confidence            99999999999999999999999999984332                                                


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      +....+++||..|||||.+.+..|+.++||||||+.++||++|++||.
T Consensus       231 --------------------------------nS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~  278 (364)
T KOG0581|consen  231 --------------------------------NSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYP  278 (364)
T ss_pred             --------------------------------hhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCC
Confidence                                            224567899999999999999999999999999999999999999998


Q ss_pred             CC-----ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          399 GE-----NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       399 ~~-----~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ..     ...+++..|+.++.+..+..       ..++++++||..||++||.+|+++.    |+++|||++...
T Consensus       279 ~~~~~~~~~~~Ll~~Iv~~ppP~lP~~-------~fS~ef~~FV~~CL~Kdp~~R~s~~----qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  279 PPNPPYLDIFELLCAIVDEPPPRLPEG-------EFSPEFRSFVSCCLRKDPSERPSAK----QLLQHPFIKKFE  342 (364)
T ss_pred             CcCCCCCCHHHHHHHHhcCCCCCCCcc-------cCCHHHHHHHHHHhcCCcccCCCHH----HHhcCHHHhhcc
Confidence            75     55788888888654332222       1233599999999999999999998    999999998643

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=5e-56  Score=424.15  Aligned_cols=261  Identities=31%  Similarity=0.506  Sum_probs=223.5

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+.++||+|+||+||+|+++.     ++..||||.+.+..+. .+..+.+..|+.||+.++|||||.|++++..+
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~-----~~~~VAIK~i~~~~l~-~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~   81 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKK-----SGTEVAIKCIAKKKLN-KKLVELLLSEIKILKELKHPNIVRLLDCIEDD   81 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEecc-----CCceEEeeeehhhccC-HHHHHHHHHHHHHHHhcCCcceeeEEEEEecC
Confidence            35789999999999999999999998     6689999999887653 45567778899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +++|||||||.||||..++++..  ++++..+                            |.++.||+.||++||+++||
T Consensus        82 ~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~----------------------------r~Fm~QLA~alq~L~~~~Ii  131 (429)
T KOG0595|consen   82 DFIYLVMEYCNGGDLSDYIRRRG--RLPEATA----------------------------RHFMQQLASALQFLHENNII  131 (429)
T ss_pred             CeEEEEEEeCCCCCHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999998863  4444333                            47889999999999999999


Q ss_pred             eccCCCCceEEccC------CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          242 YRDLKPENVLVRED------GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       242 HrDLKp~NILl~~~------~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      ||||||+||||+..      -.+||+|||+|+.+..                                            
T Consensus       132 HRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~--------------------------------------------  167 (429)
T KOG0595|consen  132 HRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQP--------------------------------------------  167 (429)
T ss_pred             eccCCcceEEeccCCCCCCCceEEecccchhhhCCc--------------------------------------------
Confidence            99999999999864      4689999999976542                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         .....+.||+|.|||||++..+.|+.|+|+||+|+|+|+|++|++
T Consensus       168 -----------------------------------~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~  212 (429)
T KOG0595|consen  168 -----------------------------------GSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKP  212 (429)
T ss_pred             -----------------------------------hhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCC
Confidence                                               122356799999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||...+..+++..+.++....|........      .+.+|+..+|..+|..|.+..    +-+.|++...-
T Consensus       213 Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~------~~~~Ll~~ll~~~~~~~~~~~----~~~~~~~l~~~  274 (429)
T KOG0595|consen  213 PFDAETPKELLLYIKKGNEIVPVLPAELSN------PLRELLISLLQRNPKDRISFE----DFFDHPFLAAN  274 (429)
T ss_pred             CccccCHHHHHHHHhccccccCchhhhccC------chhhhhhHHHhcCccccCchH----HhhhhhhcccC
Confidence            999999999999888776555543332222      367999999999999999987    88888887653

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.7e-55  Score=401.90  Aligned_cols=279  Identities=26%  Similarity=0.394  Sum_probs=218.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|+.+.++|+|+||+||+|++++     +++.||||.+..... .....+-..+|+++|++|+|||+|.|+++|.....
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~-----TgqIVAIKkF~Esed-d~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrk   75 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKD-----TGQIVAIKKFVESED-DPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRK   75 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCC-----cccEEEEEeeccCCc-cHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcce
Confidence            579999999999999999999998     899999999864322 12233445679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      ++||+|||+. ++.+.+++.+ ...+...                            ++.|+.|++.|+.|+|+++||||
T Consensus        76 lhLVFE~~dh-TvL~eLe~~p-~G~~~~~----------------------------vk~~l~Q~l~ai~~cHk~n~IHR  125 (396)
T KOG0593|consen   76 LHLVFEYCDH-TVLHELERYP-NGVPSEL----------------------------VKKYLYQLLKAIHFCHKNNCIHR  125 (396)
T ss_pred             eEEEeeecch-HHHHHHHhcc-CCCCHHH----------------------------HHHHHHHHHHHhhhhhhcCeecc
Confidence            9999999955 6666676654 2233222                            24789999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||||||||+.+|.+||||||+|+.+...                                                   
T Consensus       126 DIKPENILit~~gvvKLCDFGFAR~L~~p---------------------------------------------------  154 (396)
T KOG0593|consen  126 DIKPENILITQNGVVKLCDFGFARTLSAP---------------------------------------------------  154 (396)
T ss_pred             cCChhheEEecCCcEEeccchhhHhhcCC---------------------------------------------------
Confidence            99999999999999999999999654321                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 +...+.++.|++|+|||.+.| ..|+..+||||+||++.||++|.+.|+|.++
T Consensus       155 ---------------------------gd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SD  207 (396)
T KOG0593|consen  155 ---------------------------GDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSD  207 (396)
T ss_pred             ---------------------------cchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcch
Confidence                                       123456789999999999998 5699999999999999999999999999999


Q ss_pred             HHHHHHHhcCC-------------------CCCCCCCCCCchh---HHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          403 EKTLINILKKP-------------------LTFPRIGVSSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       403 ~~~~~~i~~~~-------------------~~~p~~~~~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+.+..|....                   ..+|......+-+   .....-+.||+.+||..||.+|++.+    |+|.
T Consensus       208 iDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~----qll~  283 (396)
T KOG0593|consen  208 IDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCE----QLLH  283 (396)
T ss_pred             HHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHH----HHhc
Confidence            88877775411                   1222222221111   12223578999999999999999998    9999


Q ss_pred             CCCcCCCCcccccCCCCCCC
Q 010140          461 HEFFKGINWALIRSIKPPEV  480 (517)
Q Consensus       461 hp~f~~~~~~~~~~~~p~~~  480 (517)
                      ||||.+.--..+..-.+...
T Consensus       284 H~yFd~~~er~~~~k~~~~~  303 (396)
T KOG0593|consen  284 HPYFDGFIERELKAKKPNEA  303 (396)
T ss_pred             ChHHHHHHHHHHHHhcccch
Confidence            99997643333333333333

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-55  Score=402.68  Aligned_cols=282  Identities=40%  Similarity=0.735  Sum_probs=250.1

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .++.+++|..+++||+|.||.|-+|+.+.     +++.||||+++++....+..+.+-..|-++|+..+||.+..|...|
T Consensus       163 ~kvTm~dFdfLKvLGkGTFGKVIL~rEKa-----t~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsF  237 (516)
T KOG0690|consen  163 NKVTMEDFDFLKVLGKGTFGKVILCREKA-----TGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSF  237 (516)
T ss_pred             ceeccchhhHHHHhcCCccceEEEEeecc-----cCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhh
Confidence            45678999999999999999999999887     7899999999999887778888888899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      +..+++|+||||+.||.|+-.+.+.  ..+.+.                            ..|+|..+|+.||.|||++
T Consensus       238 Qt~drlCFVMeyanGGeLf~HLsre--r~FsE~----------------------------RtRFYGaEIvsAL~YLHs~  287 (516)
T KOG0690|consen  238 QTQDRLCFVMEYANGGELFFHLSRE--RVFSED----------------------------RTRFYGAEIVSALGYLHSR  287 (516)
T ss_pred             ccCceEEEEEEEccCceEeeehhhh--hcccch----------------------------hhhhhhHHHHHHhhhhhhC
Confidence            9999999999999999998776653  233333                            3368999999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      +||.||||.+|+|+|.+|++||+|||+++.-.                                                
T Consensus       288 ~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I------------------------------------------------  319 (516)
T KOG0690|consen  288 NIVYRDLKLENLLLDKDGHIKITDFGLCKEEI------------------------------------------------  319 (516)
T ss_pred             CeeeeechhhhheeccCCceEeeecccchhcc------------------------------------------------
Confidence            99999999999999999999999999984211                                                


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                    .......++||||.|+|||++....|+.++|+|.+||+||||++|+.||.
T Consensus       320 ------------------------------~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFy  369 (516)
T KOG0690|consen  320 ------------------------------KYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFY  369 (516)
T ss_pred             ------------------------------cccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccc
Confidence                                          01234568899999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSI  475 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~  475 (517)
                      ..+...++..|+...+.||....+         +++.|+..+|.+||.+|++.. +.++|+.+|+||.+++|...  +.+
T Consensus       370 n~dh~kLFeLIl~ed~kFPr~ls~---------eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki  440 (516)
T KOG0690|consen  370 NKDHEKLFELILMEDLKFPRTLSP---------EAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKKI  440 (516)
T ss_pred             ccchhHHHHHHHhhhccCCccCCH---------HHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhcc
Confidence            999999999999999999876544         489999999999999999976 46789999999999999965  778


Q ss_pred             CCCCCCC
Q 010140          476 KPPEVPN  482 (517)
Q Consensus       476 ~p~~~~~  482 (517)
                      .||+.|+
T Consensus       441 ~PPfKPq  447 (516)
T KOG0690|consen  441 EPPFKPQ  447 (516)
T ss_pred             CCCCCCC
Confidence            9998876

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.5e-54  Score=383.18  Aligned_cols=262  Identities=36%  Similarity=0.595  Sum_probs=237.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ....+++|++++.||+|.||.||+|+.+.     ++-.||+|++.+.........+++.+|++|.+.|+||||+++|++|
T Consensus        17 ~~~~l~dfeigr~LgkgkFG~vYlarekk-----s~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~f   91 (281)
T KOG0580|consen   17 KTWTLDDFEIGRPLGKGKFGNVYLAREKK-----SLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYF   91 (281)
T ss_pred             cccchhhccccccccCCccccEeEeeecc-----CCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhhe
Confidence            45678999999999999999999999987     7789999999998887777788899999999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+....||++||.++|+|+..++..+..++.+..+.                            .|++|++.||.|+|.+
T Consensus        92 hd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a----------------------------~Yi~q~A~Al~y~h~k  143 (281)
T KOG0580|consen   92 HDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAA----------------------------TYIKQLANALLYCHLK  143 (281)
T ss_pred             eccceeEEEEEecCCchHHHHHHhcccccccccchh----------------------------HHHHHHHHHHHHhccC
Confidence            999999999999999999999998777777776665                            6889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      +||||||||+|+|++.+|.+||+|||.+-.-+                                                
T Consensus       144 ~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p------------------------------------------------  175 (281)
T KOG0580|consen  144 RVIHRDIKPENLLLGSAGELKIADFGWSVHAP------------------------------------------------  175 (281)
T ss_pred             CcccCCCCHHHhccCCCCCeeccCCCceeecC------------------------------------------------
Confidence            99999999999999999999999999972211                                                


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      ..+..+.|||..|.+||+..+..++..+|+|++|++.||++.|.+||.
T Consensus       176 --------------------------------~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFe  223 (281)
T KOG0580|consen  176 --------------------------------SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFE  223 (281)
T ss_pred             --------------------------------CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchh
Confidence                                            234567899999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .....+.+.+|.+....+|.....         .++|||.+||.++|.+|++..    |++.|||+..
T Consensus       224 s~~~~etYkrI~k~~~~~p~~is~---------~a~dlI~~ll~~~p~~r~~l~----~v~~hpwI~a  278 (281)
T KOG0580|consen  224 SQSHSETYKRIRKVDLKFPSTISG---------GAADLISRLLVKNPIERLALT----EVMDHPWIVA  278 (281)
T ss_pred             hhhhHHHHHHHHHccccCCcccCh---------hHHHHHHHHhccCccccccHH----HHhhhHHHHh
Confidence            999999999999998888843322         489999999999999999988    9999999853

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4e-54  Score=453.10  Aligned_cols=286  Identities=39%  Similarity=0.680  Sum_probs=247.2

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ...+...++|.++++||+|+||.|.+++.+.     +++.||+|++++-.+..+.....|..|..||...+.+.|+.|+.
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~-----t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~Lhy  142 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKS-----TEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHY  142 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeec-----cccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHH
Confidence            3456778999999999999999999999998     78999999999987766666777888999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .|+++.++||||||++||||..++.+..  .+++..+                            |+|+..|+.||+-||
T Consensus       143 AFQD~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~A----------------------------rFY~aEiVlAldslH  192 (1317)
T KOG0612|consen  143 AFQDERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWA----------------------------RFYTAEIVLALDSLH  192 (1317)
T ss_pred             HhcCccceEEEEecccCchHHHHHhhcC--CChHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999998763  5555555                            489999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +.|+|||||||+|||||..|++||+|||.+-+++...                                           
T Consensus       193 ~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG-------------------------------------------  229 (1317)
T KOG0612|consen  193 SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADG-------------------------------------------  229 (1317)
T ss_pred             hccceeccCCcceeEecccCcEeeccchhHHhcCCCC-------------------------------------------
Confidence            9999999999999999999999999999884443211                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc----C-CCCCccchHHHHHHHHHHHh
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS----G-QGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~----~-~~~~~~~DiWSlGvil~ell  391 (517)
                                                        .......+|||.|.+||++.    + ..|+..+|+||+||++|||+
T Consensus       230 ----------------------------------~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMl  275 (1317)
T KOG0612|consen  230 ----------------------------------TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEML  275 (1317)
T ss_pred             ----------------------------------cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHH
Confidence                                              11234568999999999995    2 45899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcC--CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          392 YGTTPFKGENNEKTLINILKK--PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      +|.+||+.++..+.+.+|+.-  .+.||....       .+.++++||.+++. +|+.|++- .+++++.+||||.+++|
T Consensus       276 yG~TPFYadslveTY~KIm~hk~~l~FP~~~~-------VSeeakdLI~~ll~-~~e~RLgr-ngiedik~HpFF~g~~W  346 (1317)
T KOG0612|consen  276 YGETPFYADSLVETYGKIMNHKESLSFPDETD-------VSEEAKDLIEALLC-DREVRLGR-NGIEDIKNHPFFEGIDW  346 (1317)
T ss_pred             cCCCcchHHHHHHHHHHHhchhhhcCCCcccc-------cCHHHHHHHHHHhc-Chhhhccc-ccHHHHHhCccccCCCh
Confidence            999999999999999999975  566773322       33469999999987 79999994 45569999999999999


Q ss_pred             ccccCCCCCCCCCC
Q 010140          470 ALIRSIKPPEVPNN  483 (517)
Q Consensus       470 ~~~~~~~p~~~~~~  483 (517)
                      +.|+...||++|.-
T Consensus       347 ~~iR~~~pP~vPev  360 (1317)
T KOG0612|consen  347 DNIRESVPPVVPEV  360 (1317)
T ss_pred             hhhhhcCCCCCCcC
Confidence            99999999999873

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-53  Score=428.70  Aligned_cols=263  Identities=29%  Similarity=0.494  Sum_probs=230.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+-|++++.||.|+.|.|-+|++..     +++.+|||++.+...........+++|+.||+.+.||||+++|++|++..
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~-----TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~   85 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAE-----TGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ   85 (786)
T ss_pred             ccceeccccccCCCCceehhhhccc-----ccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCc
Confidence            4679999999999999999999887     89999999998774333445567778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++|||+||++||.|++++.+.  +.+++.++.                            ++.+||+.||.|+|..+|+|
T Consensus        86 ~lylvlEyv~gGELFdylv~k--G~l~e~eaa----------------------------~ff~QIi~gv~yCH~~~icH  135 (786)
T KOG0588|consen   86 HLYLVLEYVPGGELFDYLVRK--GPLPEREAA----------------------------HFFRQILDGVSYCHAFNICH  135 (786)
T ss_pred             eEEEEEEecCCchhHHHHHhh--CCCCCHHHH----------------------------HHHHHHHHHHHHHhhhccee
Confidence            999999999999999999876  456666555                            67799999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|+||+..+++||+|||+|..                                                      
T Consensus       136 RDLKpENlLLd~~~nIKIADFGMAsL------------------------------------------------------  161 (786)
T KOG0588|consen  136 RDLKPENLLLDVKNNIKIADFGMASL------------------------------------------------------  161 (786)
T ss_pred             ccCCchhhhhhcccCEeeeccceeec------------------------------------------------------
Confidence            99999999999999999999999821                                                      


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                               +..+....+.||+|+|.|||++.|.+| +.++||||+|||||.||+|+.||++.+
T Consensus       162 -------------------------e~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN  216 (786)
T KOG0588|consen  162 -------------------------EVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN  216 (786)
T ss_pred             -------------------------ccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc
Confidence                                     111233456699999999999999998 889999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      -..++.++.++.+.+|.....         ++++||.+||..||++|+|.+    ||++|||+.+..-...
T Consensus       217 ir~LLlKV~~G~f~MPs~Is~---------eaQdLLr~ml~VDp~~RiT~~----eI~kHP~l~g~~~~~~  274 (786)
T KOG0588|consen  217 IRVLLLKVQRGVFEMPSNISS---------EAQDLLRRMLDVDPSTRITTE----EILKHPFLSGYTSLPS  274 (786)
T ss_pred             HHHHHHHHHcCcccCCCcCCH---------HHHHHHHHHhccCccccccHH----HHhhCchhhcCCCCCh
Confidence            999999999999998854332         589999999999999999998    9999999998654433

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-53  Score=410.67  Aligned_cols=272  Identities=33%  Similarity=0.540  Sum_probs=222.4

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH-----------HHHhHHHHHHHHHH
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR-----------KKLHRADMEKVILT  144 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~-----------~~~~~~~~E~~il~  144 (517)
                      ..+.+..+++|++++.||+|.||.|-+|++..     +++.||||++.+......           ...+++.+|+.||+
T Consensus        89 ~~~~~k~lNqy~l~~eiG~G~yGkVkLar~~~-----~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailK  163 (576)
T KOG0585|consen   89 DDQDRKQLNQYELIKEIGSGQYGKVKLARDEV-----DGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILK  163 (576)
T ss_pred             CcccceehhheehhhhhcCCccceEEEEeecC-----CCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHH
Confidence            34566778999999999999999999999886     789999999987765322           12457889999999


Q ss_pred             hcCCCCccceeeeeec--CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhh
Q 010140          145 MLDHPFLPTLYAEFEA--SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYR  222 (517)
Q Consensus       145 ~l~HpnIv~l~~~~~~--~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (517)
                      +|+|||||+|+++..+  .+.+|||+|||..|.+...-..   +.                           .+.+.+.|
T Consensus       164 kl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d---~~---------------------------els~~~Ar  213 (576)
T KOG0585|consen  164 KLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPD---KP---------------------------ELSEQQAR  213 (576)
T ss_pred             hcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCCCC---cc---------------------------cccHHHHH
Confidence            9999999999999975  5689999999999887542111   11                           12334457


Q ss_pred             HHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCC
Q 010140          223 FYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQP  302 (517)
Q Consensus       223 ~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (517)
                      .|+++++.||+|||.+|||||||||+|+||+.+|+|||+|||.+.......                             
T Consensus       214 ~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~-----------------------------  264 (576)
T KOG0585|consen  214 KYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGS-----------------------------  264 (576)
T ss_pred             HHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeeccceeeecccCC-----------------------------
Confidence            899999999999999999999999999999999999999999983322100                             


Q ss_pred             ccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---C-CCccc
Q 010140          303 VLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---G-HGSAV  378 (517)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~-~~~~~  378 (517)
                                                                  .+.........+|||.|+|||.+.+.   . .+.+.
T Consensus       265 --------------------------------------------~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~  300 (576)
T KOG0585|consen  265 --------------------------------------------DEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFAL  300 (576)
T ss_pred             --------------------------------------------ccccHHHHhhcCCCccccchHhhcCCCCccccchhh
Confidence                                                        00001112335899999999999873   2 37899


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHh
Q 010140          379 DWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI  458 (517)
Q Consensus       379 DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~el  458 (517)
                      ||||+||+||.|+.|+.||.+....+++.+|+..++.+|....       +...++|||.+||.+||++|++..    +|
T Consensus       301 DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe-------~~e~~kDli~~lL~KdP~~Ri~l~----~i  369 (576)
T KOG0585|consen  301 DIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPE-------INEDLKDLIKRLLEKDPEQRITLP----DI  369 (576)
T ss_pred             hhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCccc-------ccHHHHHHHHHHhhcChhheeehh----hh
Confidence            9999999999999999999999999999999999999987652       223589999999999999999998    99


Q ss_pred             hcCCCcCC
Q 010140          459 KRHEFFKG  466 (517)
Q Consensus       459 l~hp~f~~  466 (517)
                      +.|||...
T Consensus       370 k~Hpwvt~  377 (576)
T KOG0585|consen  370 KLHPWVTR  377 (576)
T ss_pred             eecceecc
Confidence            99999753

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-52  Score=420.45  Aligned_cols=262  Identities=37%  Similarity=0.580  Sum_probs=226.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH--HHHHhHHHHHHHHHHhcC-CCCccceeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI--RKKLHRADMEKVILTMLD-HPFLPTLYAE  157 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~-HpnIv~l~~~  157 (517)
                      ...+.|.+++.||+|+||.|++|++..     ++..||+|++.+.....  ......+.+|+.+++.+. ||||++++++
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~-----t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev   88 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRL-----TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEV   88 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeecc-----CCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEE
Confidence            456789999999999999999999987     67899999887752221  133456668999999998 9999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.....+|+|||||.||+|++++...  .++.+.+++                            .+++||+.||+|||+
T Consensus        89 ~~t~~~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar----------------------------~~F~Qlisav~y~H~  138 (370)
T KOG0583|consen   89 FATPTKIYIVMEYCSGGDLFDYIVNK--GRLKEDEAR----------------------------KYFRQLISAVAYCHS  138 (370)
T ss_pred             EecCCeEEEEEEecCCccHHHHHHHc--CCCChHHHH----------------------------HHHHHHHHHHHHHHh
Confidence            99999999999999999999999883  455554444                            678999999999999


Q ss_pred             cCceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +||+||||||||||++.+ +++||+|||++....                                              
T Consensus       139 ~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~----------------------------------------------  172 (370)
T KOG0583|consen  139 RGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP----------------------------------------------  172 (370)
T ss_pred             CCEeeCCCCHHHEEecCCCCCEEEeccccccccC----------------------------------------------
Confidence            999999999999999999 999999999984331                                              


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-C-CccchHHHHHHHHHHHhhCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-H-GSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~-~~~~DiWSlGvil~elltG~  394 (517)
                                                      .......++|||+.|+|||++.+.. | +.++||||+||+||.|++|.
T Consensus       173 --------------------------------~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~  220 (370)
T KOG0583|consen  173 --------------------------------GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGR  220 (370)
T ss_pred             --------------------------------CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCC
Confidence                                            0122346779999999999999987 8 58999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .||...+...++.+|..+...+|....  +      .++++||.+||..||.+|+++.    +++.||||+.-
T Consensus       221 ~PF~d~~~~~l~~ki~~~~~~~p~~~~--S------~~~~~Li~~mL~~~P~~R~t~~----~i~~h~w~~~~  281 (370)
T KOG0583|consen  221 LPFDDSNVPNLYRKIRKGEFKIPSYLL--S------PEARSLIEKMLVPDPSTRITLL----EILEHPWFQKE  281 (370)
T ss_pred             CCCCCccHHHHHHHHhcCCccCCCCcC--C------HHHHHHHHHHcCCCcccCCCHH----HHhhChhhccC
Confidence            999999999999999999998887653  2      2489999999999999999998    99999999963

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-53  Score=412.82  Aligned_cols=266  Identities=27%  Similarity=0.427  Sum_probs=218.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~  160 (517)
                      ..++|.++++||.|+||.||+|+.+.     ++..||||.+++....-.+.  .-.+|+..|++|+ |||||+|.+++.+
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~-----~~~~VAIK~MK~Kf~s~ee~--~nLREvksL~kln~hpniikL~Evi~d   80 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKE-----TGELVAIKKMKKKFYSWEEC--MNLREVKSLRKLNPHPNIIKLKEVIRD   80 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecC-----CCceeeHHHHHhhhccHHHH--HHHHHHHHHHhcCCCCcchhhHHHhhc
Confidence            45789999999999999999999987     67889999998765442221  2246999999998 9999999999988


Q ss_pred             Cc-eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 SH-YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 ~~-~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .+ .+|+||||| ..+|+++++.+ .+.++++.+                            +.|+.||++||+|+|.+|
T Consensus        81 ~~~~L~fVfE~M-d~NLYqLmK~R-~r~fse~~i----------------------------rnim~QilqGL~hiHk~G  130 (538)
T KOG0661|consen   81 NDRILYFVFEFM-DCNLYQLMKDR-NRLFSESDI----------------------------RNIMYQILQGLAHIHKHG  130 (538)
T ss_pred             cCceEeeeHHhh-hhhHHHHHhhc-CCcCCHHHH----------------------------HHHHHHHHHHHHHHHhcC
Confidence            87 999999999 67999999886 455555444                            488999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +.||||||||||+..+..+||+|||+|+.+...+                                              
T Consensus       131 fFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp----------------------------------------------  164 (538)
T KOG0661|consen  131 FFHRDLKPENILISGNDVIKIADFGLAREVRSKP----------------------------------------------  164 (538)
T ss_pred             cccccCChhheEecccceeEecccccccccccCC----------------------------------------------
Confidence            9999999999999988999999999997654322                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                       ..+.++.|++|+|||++.... |+.++||||+|||++|+.+-++.|.
T Consensus       165 ---------------------------------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFP  211 (538)
T KOG0661|consen  165 ---------------------------------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFP  211 (538)
T ss_pred             ---------------------------------CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCC
Confidence                                             235568999999999998765 8999999999999999999999999


Q ss_pred             CCChHHHHHHHhcC-------------------CCCCCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          399 GENNEKTLINILKK-------------------PLTFPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       399 ~~~~~~~~~~i~~~-------------------~~~~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      |.++.+.+.+|..-                   .+.+|.........  .....++.+||.+||.+||.+||||.    |
T Consensus       212 G~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~----~  287 (538)
T KOG0661|consen  212 GASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTAS----Q  287 (538)
T ss_pred             CCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHH----H
Confidence            99999988888641                   12222222111111  02345688999999999999999998    9


Q ss_pred             hhcCCCcCCC
Q 010140          458 IKRHEFFKGI  467 (517)
Q Consensus       458 ll~hp~f~~~  467 (517)
                      +|+||||+.-
T Consensus       288 al~~pffq~~  297 (538)
T KOG0661|consen  288 ALQHPFFQVG  297 (538)
T ss_pred             HhcCcccccc
Confidence            9999999854

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=2.2e-53  Score=418.21  Aligned_cols=256  Identities=30%  Similarity=0.523  Sum_probs=225.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|.+.+.||+|+||.||+|+.+.     +.+.||||.+.+.... .+.++.+.+|++|++.++|||||.++++|+...
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~-----t~~~vAik~i~K~gr~-~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~   74 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKY-----TIQVVAIKFIDKSGRN-EKELKNLRQEVRILRSLKHPNIVEMLESFETSA   74 (808)
T ss_pred             CcchhHHHHhcCCccceeeeccccc-----ceeEEEEEEehhcCCc-hHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc
Confidence            3689999999999999999999987     7899999999876433 456778888999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++|+|.|||.| +|..++...  ..++++.+                            +.++.|++.||.|||+++|+|
T Consensus        75 ~~~vVte~a~g-~L~~il~~d--~~lpEe~v----------------------------~~~a~~LVsaL~yLhs~rilh  123 (808)
T KOG0597|consen   75 HLWVVTEYAVG-DLFTILEQD--GKLPEEQV----------------------------RAIAYDLVSALYYLHSNRILH  123 (808)
T ss_pred             eEEEEehhhhh-hHHHHHHhc--cCCCHHHH----------------------------HHHHHHHHHHHHHHHhcCccc
Confidence            99999999966 999999875  44555444                            477899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||+||.|||+...|++|+||||+|+.+....                                                 
T Consensus       124 rd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t-------------------------------------------------  154 (808)
T KOG0597|consen  124 RDMKPQNILLEKGGTLKLCDFGLARAMSTNT-------------------------------------------------  154 (808)
T ss_pred             ccCCcceeeecCCCceeechhhhhhhcccCc-------------------------------------------------
Confidence            9999999999999999999999996544211                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   ...+++.|||.|||||++.+.+|+..+|+||||||+|||++|++||....-
T Consensus       155 -----------------------------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si  205 (808)
T KOG0597|consen  155 -----------------------------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSI  205 (808)
T ss_pred             -----------------------------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHH
Confidence                                         123556799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .++...|..++..+|....         ..+.+||..+|.+||.+|++..    +++.|||+++
T Consensus       206 ~~Lv~~I~~d~v~~p~~~S---------~~f~nfl~gLL~kdP~~RltW~----~Ll~HpF~k~  256 (808)
T KOG0597|consen  206 TQLVKSILKDPVKPPSTAS---------SSFVNFLQGLLIKDPAQRLTWT----DLLGHPFWKG  256 (808)
T ss_pred             HHHHHHHhcCCCCCccccc---------HHHHHHHHHHhhcChhhcccHH----HHhcChHHhh
Confidence            9999999999888776322         2489999999999999999998    9999999986

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-54  Score=382.45  Aligned_cols=263  Identities=28%  Similarity=0.451  Sum_probs=224.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.++||+|.|+.||+|.++.     +++.+|+|++........ ..+.+.+|++|.+.|+|||||+|.+.+...
T Consensus         9 f~d~y~l~e~igkG~FSvVrRc~~~~-----tg~~fa~kiin~~k~~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~   82 (355)
T KOG0033|consen    9 FSDNYDVKEELGKGAFSVVRRCVHKT-----TGLEFAAKIINTKKLSAR-DFQKLEREARICRKLQHPNIVRLHDSIQEE   82 (355)
T ss_pred             cchhhhHHHHHccCchHHHHHHHhcc-----chHHHHHHHhhhhhhccc-cHHHHHHHHHHHHhcCCCcEeehhhhhccc
Confidence            34789999999999999999998886     788999999987766544 667888899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|||+|++.|++|..-+-..    +-.                          .+....++++||+.||.|+|.+|||
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R----~~y--------------------------SEa~aSH~~rQiLeal~yCH~n~Iv  132 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVAR----EFY--------------------------SEADASHCIQQILEALAYCHSNGIV  132 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHH----HHH--------------------------HHHHHHHHHHHHHHHHHHHHhcCce
Confidence            9999999999999997655432    111                          2222347999999999999999999


Q ss_pred             eccCCCCceEEccC---CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLVRED---GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl~~~---~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||+||+|+|+...   .-+||+|||+|.....                                               
T Consensus       133 HRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~-----------------------------------------------  165 (355)
T KOG0033|consen  133 HRDLKPENLLLASKAKGAAVKLADFGLAIEVND-----------------------------------------------  165 (355)
T ss_pred             eccCChhheeeeeccCCCceeecccceEEEeCC-----------------------------------------------
Confidence            99999999999533   3699999999843321                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      ......++|||.|||||++...+|+..+|||+.|||||-|+.|.+||.
T Consensus       166 --------------------------------g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~  213 (355)
T KOG0033|consen  166 --------------------------------GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  213 (355)
T ss_pred             --------------------------------ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCC
Confidence                                            122346789999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      +.+...++..|..+.+.++...+....     +++++||++||..||.+|+|+.    |+|+|||+.+.+
T Consensus       214 ~~~~~rlye~I~~g~yd~~~~~w~~is-----~~Ak~LvrrML~~dP~kRIta~----EAL~HpWi~~r~  274 (355)
T KOG0033|consen  214 DEDQHRLYEQIKAGAYDYPSPEWDTVT-----PEAKSLIRRMLTVNPKKRITAD----EALKHPWICNRE  274 (355)
T ss_pred             CccHHHHHHHHhccccCCCCcccCcCC-----HHHHHHHHHHhccChhhhccHH----HHhCCchhcchH
Confidence            999999999999998888765444332     3589999999999999999998    999999998754

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.1e-53  Score=386.65  Aligned_cols=255  Identities=27%  Similarity=0.393  Sum_probs=210.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee-eee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA-EFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~-~~~  159 (517)
                      ..+.+|+++++||+|.||+||++.+..     +++.+|.|.+.-+.+. .+.......|+.+|++|+|||||++++ .|.
T Consensus        16 ~~l~~y~Il~~IG~GsFg~vykv~~~~-----~g~l~a~K~i~f~~md-~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~   89 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFGEVYKVQCLL-----DGKLVALKKIQFGMMD-AKARQDCVKEISLLKQLNHPNIVQYYAHSFI   89 (375)
T ss_pred             ccHHHHHHHHHHcCCcchheEEeeecc-----Ccchhhhhhcchhhcc-HHHHHHHHHHHHHHHhcCCchHHHHHHHhhh
Confidence            445689999999999999999999987     7899999999855443 455667778999999999999999998 565


Q ss_pred             cCce-eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-
Q 010140          160 ASHY-SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-  237 (517)
Q Consensus       160 ~~~~-~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-  237 (517)
                      .+.. ++||||||.+|||.+.+++.+...-.+++...|                          +|..|++.||..+|+ 
T Consensus        90 ~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vw--------------------------k~f~QL~~AL~~cH~~  143 (375)
T KOG0591|consen   90 EDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVW--------------------------KYFVQLCRALYHCHSK  143 (375)
T ss_pred             ccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHH--------------------------HHHHHHHHHHHHHhcc
Confidence            5555 899999999999999998765444333333322                          677899999999999 


Q ss_pred             -cC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          238 -MG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       238 -~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                       ..  |+||||||.||+|+.+|.|||+|||+++.+...                                          
T Consensus       144 ~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~------------------------------------------  181 (375)
T KOG0591|consen  144 IPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSK------------------------------------------  181 (375)
T ss_pred             ccccceeeccCcchheEEcCCCceeeccchhHhHhcch------------------------------------------
Confidence             44  999999999999999999999999999654421                                          


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          ..-..+++|||+||+||.+.+.+|+.++||||+||++|||+.-+
T Consensus       182 ------------------------------------~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~  225 (375)
T KOG0591|consen  182 ------------------------------------TTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQ  225 (375)
T ss_pred             ------------------------------------hHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcC
Confidence                                                11235679999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +||.|.+-.++..+|.++..+  +....     .-+.++..||..|+..||+.||+.-
T Consensus       226 ~PF~g~n~~~L~~KI~qgd~~--~~p~~-----~YS~~l~~li~~ci~vd~~~RP~t~  276 (375)
T KOG0591|consen  226 SPFYGDNLLSLCKKIEQGDYP--PLPDE-----HYSTDLRELINMCIAVDPEQRPDTV  276 (375)
T ss_pred             CCcccccHHHHHHHHHcCCCC--CCcHH-----HhhhHHHHHHHHHccCCcccCCCcc
Confidence            999999888999999888543  21111     1223589999999999999999853

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=6.9e-51  Score=408.32  Aligned_cols=268  Identities=37%  Similarity=0.711  Sum_probs=227.5

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ....++|++.+.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+|+.++||||+++++++.
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~   88 (329)
T PTZ00263         14 SWKLSDFEMGETLGTGSFGRVRIAKHKG-----TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQ   88 (329)
T ss_pred             CCCchheEEEEEEEecCCeEEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            3456899999999999999999999886     67899999998776554455677888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +++..|+||||++||+|.+++...  ..++...+                            +.++.||+.||+|||++|
T Consensus        89 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~aL~~LH~~~  138 (329)
T PTZ00263         89 DENRVYFLLEFVVGGELFTHLRKA--GRFPNDVA----------------------------KFYHAELVLAFEYLHSKD  138 (329)
T ss_pred             cCCEEEEEEcCCCCChHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            999999999999999999988764  22332222                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.+|.+||+|||+++....                                                
T Consensus       139 ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~------------------------------------------------  170 (329)
T PTZ00263        139 IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD------------------------------------------------  170 (329)
T ss_pred             eeecCCCHHHEEECCCCCEEEeeccCceEcCC------------------------------------------------
Confidence            99999999999999999999999999843210                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                       .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+
T Consensus       171 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  217 (329)
T PTZ00263        171 ---------------------------------RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFD  217 (329)
T ss_pred             ---------------------------------CcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCC
Confidence                                             01234699999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+..+.+..+..+...+|...         ...+++||.+||+.||.+|+++. ..+.++++||||++.+|..+
T Consensus       218 ~~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~~~~~~  282 (329)
T PTZ00263        218 DTPFRIYEKILAGRLKFPNWF---------DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKL  282 (329)
T ss_pred             CCHHHHHHHHhcCCcCCCCCC---------CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCCCHHHH
Confidence            888888888887766655421         12489999999999999999853 34569999999999999976

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=6.4e-51  Score=409.81  Aligned_cols=281  Identities=36%  Similarity=0.685  Sum_probs=232.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .++..++|.+.+.||+|+||.||+|+++..    ....||+|++.+...........+.+|+.+++.++||||+++++++
T Consensus        25 ~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~  100 (340)
T PTZ00426         25 NKMKYEDFNFIRTLGTGSFGRVILATYKNE----DFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSF  100 (340)
T ss_pred             CCCChhhcEEEEEEeecCCeEEEEEEEECC----CCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEE
Confidence            445678999999999999999999987652    3368999999876655455567788899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++.+|+||||++||+|.+++....  .++...+                            +.++.||+.||+|||++
T Consensus       101 ~~~~~~~lv~Ey~~~g~L~~~i~~~~--~~~~~~~----------------------------~~~~~qi~~aL~~LH~~  150 (340)
T PTZ00426        101 KDESYLYLVLEFVIGGEFFTFLRRNK--RFPNDVG----------------------------CFYAAQIVLIFEYLQSL  150 (340)
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987642  2332222                            36789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.+|.+||+|||+++....                                               
T Consensus       151 ~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~-----------------------------------------------  183 (340)
T PTZ00426        151 NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT-----------------------------------------------  183 (340)
T ss_pred             CeEccCCCHHHEEECCCCCEEEecCCCCeecCC-----------------------------------------------
Confidence            999999999999999999999999999843210                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                        .....+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       184 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~  229 (340)
T PTZ00426        184 ----------------------------------RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFY  229 (340)
T ss_pred             ----------------------------------CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCC
Confidence                                              0123469999999999999889999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCC-CCChHHhhcCCCcCCCCccccc--CC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINWALIR--SI  475 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~-~~~~~ell~hp~f~~~~~~~~~--~~  475 (517)
                      +.+....+..+......+|....         ..+.+||.+||+.||++|++. ...++++++||||++++|..+.  .+
T Consensus       230 ~~~~~~~~~~i~~~~~~~p~~~~---------~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~~~~~~  300 (340)
T PTZ00426        230 ANEPLLIYQKILEGIIYFPKFLD---------NNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNV  300 (340)
T ss_pred             CCCHHHHHHHHhcCCCCCCCCCC---------HHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCC
Confidence            98888888888877666554321         248999999999999999743 2345699999999999999764  45


Q ss_pred             CCCCCCCC
Q 010140          476 KPPEVPNN  483 (517)
Q Consensus       476 ~p~~~~~~  483 (517)
                      .+|..|..
T Consensus       301 ~~~~~p~~  308 (340)
T PTZ00426        301 EVPYKPKY  308 (340)
T ss_pred             CCCcCCCC
Confidence            67776653

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-51  Score=403.19  Aligned_cols=265  Identities=40%  Similarity=0.722  Sum_probs=223.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||+|++.............+.+|+.+++.++||||+++++++.+++.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRI-----SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcC-----CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCe
Confidence            479999999999999999999886     678999999987654444456677889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||+++|+|.+++....  .+.....                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~i~H~  125 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRNSG--RFSNSTG----------------------------LFYASEIVCALEYLHSKEIVYR  125 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeeec
Confidence            999999999999999887642  2332222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+++....                                                    
T Consensus       126 dlkp~NIli~~~~~~kl~Dfg~~~~~~~----------------------------------------------------  153 (291)
T cd05612         126 DLKPENILLDKEGHIKLTDFGFAKKLRD----------------------------------------------------  153 (291)
T ss_pred             CCCHHHeEECCCCCEEEEecCcchhccC----------------------------------------------------
Confidence            9999999999999999999999743210                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                   .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       154 -----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~  204 (291)
T cd05612         154 -----------------------------RTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPF  204 (291)
T ss_pred             -----------------------------CcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                         012346899999999999988999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~  473 (517)
                      +.+..+......+|...         ...+++||.+||+.||.+|++.. ..+.++++||||+.++|....
T Consensus       205 ~~~~~i~~~~~~~~~~~---------~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~~~  266 (291)
T cd05612         205 GIYEKILAGKLEFPRHL---------DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVP  266 (291)
T ss_pred             HHHHHHHhCCcCCCccC---------CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCCHHHHh
Confidence            88888888776655432         12489999999999999999732 245599999999999998653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-51  Score=391.03  Aligned_cols=277  Identities=27%  Similarity=0.368  Sum_probs=230.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +....++|++..+||.|..++||+|++..     ++..||||++.-+....  .+..+.+|+..|+.++||||++++..|
T Consensus        21 ~p~n~~~YeL~e~IG~G~sa~V~~A~c~p-----~~e~VAIK~inLEkc~~--~ld~l~kE~~~msl~~HPNIv~~~~sF   93 (516)
T KOG0582|consen   21 FPLNAKDYELQEVIGVGASAVVYLARCIP-----TNEVVAIKIINLEKCNN--DLDALRKEVQTMSLIDHPNIVTYHCSF   93 (516)
T ss_pred             CCCCccceeEEEEEeccceeEeeeeeecc-----cCCEEEEEEeehhhhhh--hHHHHHHHHHHhhhcCCCCcceEEEEE
Confidence            44566899999999999999999999997     67899999998876553  377788899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..+..+|+||.||.+|++.+++.......+.+..+.                            .+.+++++||.|||.+
T Consensus        94 vv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia----------------------------~iLre~LkaL~YLH~~  145 (516)
T KOG0582|consen   94 VVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIA----------------------------TILREVLKALDYLHQN  145 (516)
T ss_pred             EecceeEEeehhhcCCcHHHHHHHHccccccHHHHH----------------------------HHHHHHHHHHHHHHhc
Confidence            999999999999999999999988765555544333                            5679999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |.||||||+.||||+.+|.|||+|||.+..+....                                        .    
T Consensus       146 G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G----------------------------------------~----  181 (516)
T KOG0582|consen  146 GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG----------------------------------------D----  181 (516)
T ss_pred             CceecccccccEEEcCCCcEEEcCceeeeeecccC----------------------------------------c----
Confidence            99999999999999999999999999873322100                                        0    


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                    ....+..+++||+.|||||++..+  +|+.|+||||||++..||.+|..|
T Consensus       182 ------------------------------R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aP  231 (516)
T KOG0582|consen  182 ------------------------------RQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAP  231 (516)
T ss_pred             ------------------------------eeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCC
Confidence                                          001112577999999999997553  599999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhH-HhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEF-EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |....+.+++...+++.++.+.......++. .....++.+|..||++||.+|||+.    ++|+|+||+...
T Consensus       232 f~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAs----kLlkh~FFk~~k  300 (516)
T KOG0582|consen  232 FSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTAS----KLLKHAFFKKAK  300 (516)
T ss_pred             cccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHH----HHhccHHHhhcc
Confidence            9999999988888887766555333322222 2234689999999999999999998    999999998753

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.3e-50  Score=398.22  Aligned_cols=277  Identities=35%  Similarity=0.566  Sum_probs=220.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++.+.||+|+||.||+|.+..     +++.||+|++.+...........+.+|+.+++.++|+||+++++++.+++.+
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~   75 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEec-----CCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeE
Confidence            38899999999999999999887     6789999999876554444445667899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++|+|..++.......++....                            ..++.||+.||+|||++||+|||
T Consensus        76 ~lv~e~~~~g~L~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~iiH~d  127 (285)
T cd05631          76 CLVLTIMNGGDLKFHIYNMGNPGFDEQRA----------------------------IFYAAELCCGLEDLQRERIVYRD  127 (285)
T ss_pred             EEEEEecCCCcHHHHHHhhCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCEEeCC
Confidence            99999999999988776543223333222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+|||++.++.+||+|||++......                                                    
T Consensus       128 ikp~Nill~~~~~~kl~Dfg~~~~~~~~----------------------------------------------------  155 (285)
T cd05631         128 LKPENILLDDRGHIRISDLGLAVQIPEG----------------------------------------------------  155 (285)
T ss_pred             CCHHHEEECCCCCEEEeeCCCcEEcCCC----------------------------------------------------
Confidence            9999999999999999999998432100                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.....
T Consensus       156 ---------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~  208 (285)
T cd05631         156 ---------------------------ETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV  208 (285)
T ss_pred             ---------------------------CeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch
Confidence                                       01123468999999999999899999999999999999999999998765432


Q ss_pred             H----HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccccC--CCC
Q 010140          405 T----LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIRS--IKP  477 (517)
Q Consensus       405 ~----~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~~--~~p  477 (517)
                      .    ...+......++..         ...++.+||.+||+.||.+||++.. .++++++||||++++|..+..  .+|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~---------~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~  279 (285)
T cd05631         209 KREEVDRRVKEDQEEYSEK---------FSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEP  279 (285)
T ss_pred             hHHHHHHHhhcccccCCcc---------CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHHHHhCcCCc
Confidence            2    22222222222211         1225899999999999999998532 356999999999999998854  477


Q ss_pred             CCCCC
Q 010140          478 PEVPN  482 (517)
Q Consensus       478 ~~~~~  482 (517)
                      |+.|.
T Consensus       280 ~~~~~  284 (285)
T cd05631         280 PFCPD  284 (285)
T ss_pred             CCCCC
Confidence            87764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.2e-51  Score=383.67  Aligned_cols=287  Identities=26%  Similarity=0.319  Sum_probs=226.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +-...++|+.+.+|++|+||.||+|+++.     +++.||+|.++.+... ...--...+|+.+|.+++|||||.+-++.
T Consensus        71 gCrsv~efe~lnrI~EGtyGiVYRakdk~-----t~eIVALKr~kmekek-~GFPItsLREIniLl~~~H~NIV~vkEVV  144 (419)
T KOG0663|consen   71 GCRSVEEFEKLNRIEEGTYGVVYRAKDKK-----TDEIVALKRLKMEKEK-EGFPITSLREINILLKARHPNIVEVKEVV  144 (419)
T ss_pred             CcccHHHHHHHhhcccCcceeEEEeccCC-----cceeEEeeeccccccc-CCCcchhHHHHHHHHhcCCCCeeeeEEEE
Confidence            34567899999999999999999999998     7899999999866421 11122345699999999999999999987


Q ss_pred             e--cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          159 E--ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       159 ~--~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .  +-+.+|||||||+. ||..++..-+ .++...+++                            .++.|++.||+|||
T Consensus       145 vG~~~d~iy~VMe~~Eh-DLksl~d~m~-q~F~~~evK----------------------------~L~~QlL~glk~lH  194 (419)
T KOG0663|consen  145 VGSNMDKIYIVMEYVEH-DLKSLMETMK-QPFLPGEVK----------------------------TLMLQLLRGLKHLH  194 (419)
T ss_pred             eccccceeeeeHHHHHh-hHHHHHHhcc-CCCchHHHH----------------------------HHHHHHHHHHHHHh
Confidence            5  34579999999954 9999887754 455555554                            67899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      .+.|+||||||+|+|++..|.+||+|||+|+.+....                                           
T Consensus       195 ~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~-------------------------------------------  231 (419)
T KOG0663|consen  195 DNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL-------------------------------------------  231 (419)
T ss_pred             hceeEecccchhheeeccCCcEEecccchhhhhcCCc-------------------------------------------
Confidence            9999999999999999999999999999997665321                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         ...+..+-|.+|+|||.+.|.. |++++|+||+|||+.||+++++
T Consensus       232 -----------------------------------k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kP  276 (419)
T KOG0663|consen  232 -----------------------------------KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKP  276 (419)
T ss_pred             -----------------------------------ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCC
Confidence                                               1234567899999999999976 9999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCC-----CCCCCCCC---------------chhHH---hhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLT-----FPRIGVSS---------------SKEFE---EVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~-----~p~~~~~~---------------~~~~~---~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .|.|..+.+.+.+|......     +|......               ...|.   ......+|+..+|.+||.+|.|+.
T Consensus       277 lf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~  356 (419)
T KOG0663|consen  277 LFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAE  356 (419)
T ss_pred             CCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHH
Confidence            99999999988888652111     11110000               00111   113467999999999999999998


Q ss_pred             CChHHhhcCCCcCCCCcccccCCCCCCCCCC
Q 010140          453 KGSVEIKRHEFFKGINWALIRSIKPPEVPNN  483 (517)
Q Consensus       453 ~~~~ell~hp~f~~~~~~~~~~~~p~~~~~~  483 (517)
                          |.|+|+||.......-....|.++...
T Consensus       357 ----~~L~h~~F~e~P~p~~P~~~Pt~P~k~  383 (419)
T KOG0663|consen  357 ----DGLKHEYFRETPLPIDPSMFPTWPAKS  383 (419)
T ss_pred             ----HhhcccccccCCCCCChhhcCCCcccc
Confidence                999999999877665566666655443

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.6e-52  Score=403.76  Aligned_cols=283  Identities=28%  Similarity=0.355  Sum_probs=220.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+.|+.+++||+|+||.||+|++..     +++.||+|.+..+... ........+|+.||++|+||||++|.+...+
T Consensus       114 r~~~~feki~kIGeGTyg~VYkAr~~~-----tgkivALKKvr~d~~~-~~~~~t~~REI~ILr~l~HpNIikL~eivt~  187 (560)
T KOG0600|consen  114 RRADSFEKIEKIGEGTYGQVYKARDLE-----TGKIVALKKVRFDNEK-EGFPITAIREIKILRRLDHPNIIKLEEIVTS  187 (560)
T ss_pred             cchHHHHHHHHhcCcchhheeEeeecc-----cCcEEEEEEeecccCC-CcchHHHHHHHHHHHhcCCCcccceeeEEEe
Confidence            456789999999999999999999987     8899999999866432 2334456679999999999999999998876


Q ss_pred             C--ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 S--HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 ~--~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .  ..+|||+|||+ -||.-++... .-.|.+                            .+++.|+.||+.||+|||++
T Consensus       188 ~~~~siYlVFeYMd-hDL~GLl~~p-~vkft~----------------------------~qIKc~mkQLl~Gl~~cH~~  237 (560)
T KOG0600|consen  188 KLSGSIYLVFEYMD-HDLSGLLSSP-GVKFTE----------------------------PQIKCYMKQLLEGLEYCHSR  237 (560)
T ss_pred             cCCceEEEEEeccc-chhhhhhcCC-CcccCh----------------------------HHHHHHHHHHHHHHHHHhhc
Confidence            5  78999999995 4887766542 223333                            34568999999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+|||||.+|||||.+|.+||+|||||+.+....                                             
T Consensus       238 gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~---------------------------------------------  272 (560)
T KOG0600|consen  238 GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSG---------------------------------------------  272 (560)
T ss_pred             CeeeccccccceEEcCCCCEEeccccceeeccCCC---------------------------------------------
Confidence            99999999999999999999999999996544211                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ....++.+-|.+|+|||.+.|.. |+.++|+||+||||.||+.|++.|
T Consensus       273 --------------------------------~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~  320 (560)
T KOG0600|consen  273 --------------------------------SAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPIL  320 (560)
T ss_pred             --------------------------------CcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCc
Confidence                                            11245567899999999999975 999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCC-----CCCCCCCC----------chh----H-HhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          398 KGENNEKTLINILKKPLT-----FPRIGVSS----------SKE----F-EEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~-----~p~~~~~~----------~~~----~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      .|.++.+.+.+|.+.-..     ++....+.          ...    + .......+|+..||..||.+|.|+.    +
T Consensus       321 ~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~----~  396 (560)
T KOG0600|consen  321 QGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTAS----S  396 (560)
T ss_pred             CCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHH----H
Confidence            999999999888652111     11000000          000    1 1123568999999999999999998    9


Q ss_pred             hhcCCCcCCCCcccccCCCCCCC
Q 010140          458 IKRHEFFKGINWALIRSIKPPEV  480 (517)
Q Consensus       458 ll~hp~f~~~~~~~~~~~~p~~~  480 (517)
                      +|+|+||.......-....|-+.
T Consensus       397 aL~seyF~t~p~~~~p~~Lp~y~  419 (560)
T KOG0600|consen  397 ALQSEYFTTEPLPCDPSSLPKYP  419 (560)
T ss_pred             HhcCcccccCCCCCCcccCCCCC
Confidence            99999996544443334444433

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.5e-51  Score=405.29  Aligned_cols=307  Identities=33%  Similarity=0.609  Sum_probs=243.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      +....-|..++.||-|+||+|.+++..+     +...||+|.+++.....++++..+..|..||...+.+.||+||..|+
T Consensus       625 KMdKSmFvkik~iGvGAFGeV~Lv~KvD-----T~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQ  699 (1034)
T KOG0608|consen  625 KMDKSMFVKIKTIGVGAFGEVCLVRKVD-----TRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQ  699 (1034)
T ss_pred             hccccceEEEeeecccccceeEEEeecc-----hhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEec
Confidence            3445679999999999999999999887     68899999999999999999999999999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+.+|+||+|++|||+..+|-+.  .-|.+..                            .|+|+++|..|+++.|..|
T Consensus       700 DkdnLYFVMdYIPGGDmMSLLIrm--gIFeE~L----------------------------ARFYIAEltcAiesVHkmG  749 (1034)
T KOG0608|consen  700 DKDNLYFVMDYIPGGDMMSLLIRM--GIFEEDL----------------------------ARFYIAELTCAIESVHKMG  749 (1034)
T ss_pred             cCCceEEEEeccCCccHHHHHHHh--ccCHHHH----------------------------HHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999887653  2233322                            2589999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccc--cccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDV--VPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||+|||||.+|++||+||||+.-+-.  ..++..                                        
T Consensus       750 FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq----------------------------------------  789 (1034)
T KOG0608|consen  750 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ----------------------------------------  789 (1034)
T ss_pred             ceecccCccceEEccCCceeeeeccccccceecccccccc----------------------------------------
Confidence            99999999999999999999999999853321  111110                                        


Q ss_pred             cccccccccccccCCCCCCccccCCcccc---------------ccccccCCcccCCCCCcccchhhcCCCCCccchHHH
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVV---------------AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT  382 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWS  382 (517)
                                   .|++..+..++-....               ..-..-.....+||+.|+|||++....|+..+|+||
T Consensus       790 -------------~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws  856 (1034)
T KOG0608|consen  790 -------------EGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWS  856 (1034)
T ss_pred             -------------CCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhH
Confidence                         1111111111111000               001112245679999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          383 LGVFLYEMLYGTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       383 lGvil~elltG~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .|||||||+.|++||...++.+...+++...  +.++.....       +.++.+||.++.. +++.|++- .+..|++.
T Consensus       857 ~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~l-------s~e~~~li~kLc~-sad~RLGk-ng~d~vKa  927 (1034)
T KOG0608|consen  857 VGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNL-------SKEALDLIQKLCC-SADSRLGK-NGADQVKA  927 (1034)
T ss_pred             hhHHHHHHhhCCCCccCCCCCcceeeeeehhhcccccccccc-------CHHHHHHHHHHhc-Chhhhhcc-cchhhhhc
Confidence            9999999999999999988877766665533  233332222       2357899988664 79999986 45668999


Q ss_pred             CCCcCCCCcccccCCCCCCCCCC
Q 010140          461 HEFFKGINWALIRSIKPPEVPNN  483 (517)
Q Consensus       461 hp~f~~~~~~~~~~~~p~~~~~~  483 (517)
                      ||||++|||..++.+..|++|..
T Consensus       928 HpfFkgIDfsslRkq~ApYIP~I  950 (1034)
T KOG0608|consen  928 HPFFKGIDFSSLRKQRAPYIPRI  950 (1034)
T ss_pred             CccccccchHhhhhccCCcCccc
Confidence            99999999999999999988763

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.6e-50  Score=408.62  Aligned_cols=306  Identities=32%  Similarity=0.563  Sum_probs=224.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++.+...........+..|+.++..++||||+++++.+.+...
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKD-----TGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECC-----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCe
Confidence            479999999999999999999886     678999999987665555566778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~l~~~~~----------------------------~~~~~qi~~aL~~lH~~givHr  125 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMKK--DTLTEEET----------------------------QFYIAETVLAIDSIHQLGFIHR  125 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeEec
Confidence            99999999999999998764  23333322                            4678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+++.+...........        .....++.       .. .  ....  ....    
T Consensus       126 DlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~--------~~~~~~~~-------~~-~--~~~~--~~~~----  181 (363)
T cd05628         126 DIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRN--------LNHSLPSD-------FT-F--QNMN--SKRK----  181 (363)
T ss_pred             CCCHHHeEECCCCCEEEeeccCccccccccccccccc--------cccccccc-------cc-c--cccc--cccc----
Confidence            9999999999999999999999865432110000000        00000000       00 0  0000  0000    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                         ...............+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..
T Consensus       182 -------------------~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~  242 (363)
T cd05628         182 -------------------AETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ  242 (363)
T ss_pred             -------------------cchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHH
Confidence                               0000000011224568999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhcC--CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCC
Q 010140          404 KTLINILKK--PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIK  476 (517)
Q Consensus       404 ~~~~~i~~~--~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~  476 (517)
                      +.+.++...  ...+|....       ...++++||.+|+. +|.+|++. ..+.||++||||++++|+.++...
T Consensus       243 ~~~~~i~~~~~~~~~p~~~~-------~s~~~~~li~~l~~-~~~~r~~r-~~~~ei~~hp~f~~~~~~~~~~~~  308 (363)
T cd05628         243 ETYKKVMNWKETLIFPPEVP-------ISEKAKDLILRFCC-EWEHRIGA-PGVEEIKTNPFFEGVDWEHIRERP  308 (363)
T ss_pred             HHHHHHHcCcCcccCCCcCC-------CCHHHHHHHHHHcC-ChhhcCCC-CCHHHHhCCCCCCCCCHHHHHhCC
Confidence            888888763  233443221       12258999999885 66666432 223499999999999999886543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-50  Score=409.76  Aligned_cols=317  Identities=33%  Similarity=0.576  Sum_probs=231.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++.+...........+.+|+.+|..++||||++++++|.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKD-----TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCe
Confidence            479999999999999999999987     678999999987655545566777889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+|||||+||+|.+++....  .+++..                            ++.|+.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~~g~L~~~l~~~~--~l~~~~----------------------------~~~~~~qi~~aL~~lH~~~ivH~  125 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMKKD--TFTEEE----------------------------TRFYIAETILAIDSIHKLGYIHR  125 (364)
T ss_pred             EEEEECCCCCcHHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEec
Confidence            999999999999999886642  233322                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+++.+............    ...           .............           
T Consensus       126 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~-----------  179 (364)
T cd05599         126 DIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRIL----SHA-----------LPSNFLDFISKPM-----------  179 (364)
T ss_pred             cCCHHHeEECCCCCEEEeecccceeccccccccccccc----ccc-----------ccccccccccccc-----------
Confidence            99999999999999999999998654321100000000    000           0000000000000           


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                            ....        ................+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..
T Consensus       180 ------~~~~--------~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~  245 (364)
T cd05599         180 ------SSKR--------KAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQ  245 (364)
T ss_pred             ------cccc--------cccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHH
Confidence                  0000        00000000011223468999999999999989999999999999999999999999998888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN  482 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~~  482 (517)
                      +.+..+.......+.....     ....++.+||.+||. +|.+|++. ..+.|+++||||++++|..+....+|.+|.
T Consensus       246 ~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~ll~-~p~~R~~~-~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~  317 (364)
T cd05599         246 ETYRKIINWKETLQFPDEV-----PLSPEAKDLIKRLCC-EAERRLGN-NGVNEIKSHPFFKGVDWEHIRERPAPIIPE  317 (364)
T ss_pred             HHHHHHHcCCCccCCCCCC-----CCCHHHHHHHHHHcc-CHhhcCCC-CCHHHHhcCCCcCCCCHHHHhhcCCCCCCC
Confidence            8777776543222111111     112358999999997 99999984 234599999999999999887777776654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.6e-51  Score=369.01  Aligned_cols=266  Identities=28%  Similarity=0.384  Sum_probs=213.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|..+++||+|.||.||+|++..     +++.||||.++..... ........+|+++|+.++|+||+.|+++|...+.
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~-----t~~~VAIKKIkl~~~k-dGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~   75 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTE-----TGKRVAIKKIKLGNAK-DGINRTALREIKLLQELKHPNIIELIDVFPHKSN   75 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecC-----CCcEEEEEEeeccccc-cCccHHHHHHHHHHHHccCcchhhhhhhccCCCc
Confidence            578899999999999999999887     7899999999866432 1223445679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +.||+||+ ..||...++...                             -.+...+++.|+.++++||+|||++.|+||
T Consensus        76 l~lVfEfm-~tdLe~vIkd~~-----------------------------i~l~pa~iK~y~~m~LkGl~y~H~~~IlHR  125 (318)
T KOG0659|consen   76 LSLVFEFM-PTDLEVVIKDKN-----------------------------IILSPADIKSYMLMTLKGLAYCHSKWILHR  125 (318)
T ss_pred             eEEEEEec-cccHHHHhcccc-----------------------------cccCHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            99999999 569998887642                             122334557899999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||.|+||+.+|.+||+|||+|+.+.....                                                 
T Consensus       126 DlKPnNLLis~~g~lKiADFGLAr~f~~p~~-------------------------------------------------  156 (318)
T KOG0659|consen  126 DLKPNNLLISSDGQLKIADFGLARFFGSPNR-------------------------------------------------  156 (318)
T ss_pred             cCCccceEEcCCCcEEeecccchhccCCCCc-------------------------------------------------
Confidence            9999999999999999999999966542111                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   .....+-|.+|+|||.+.|.. |+..+||||.|||+.||+.|.+-|.|.++
T Consensus       157 -----------------------------~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sD  207 (318)
T KOG0659|consen  157 -----------------------------IQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD  207 (318)
T ss_pred             -----------------------------ccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCch
Confidence                                         112226799999999999975 99999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-----CCCCCCCC-Cch------------h-HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          403 EKTLINILKKPL-----TFPRIGVS-SSK------------E-FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       403 ~~~~~~i~~~~~-----~~p~~~~~-~~~------------~-~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      .+.+..|...-.     .+|..... ...            - ..+..++.||+.+||..||.+|+++.    |+|+|+|
T Consensus       208 idQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~----qaL~~~y  283 (318)
T KOG0659|consen  208 IDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITAS----QALKHPY  283 (318)
T ss_pred             HHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHH----HHhcchh
Confidence            998888865211     11111000 000            0 01233578999999999999999998    9999999


Q ss_pred             cCCC
Q 010140          464 FKGI  467 (517)
Q Consensus       464 f~~~  467 (517)
                      |++.
T Consensus       284 f~~~  287 (318)
T KOG0659|consen  284 FKSL  287 (318)
T ss_pred             hhcC
Confidence            9863

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.4e-50  Score=403.43  Aligned_cols=270  Identities=40%  Similarity=0.710  Sum_probs=221.7

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+++.     +++.||||++.+..........++.+|+.+|+.++||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKA-----TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEe
Confidence            469999999999999886     678999999987765555556677789999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |++||+|.+++...  ..+.+..                            ++.++.||+.||+|||++||+||||||+|
T Consensus        76 ~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~~L~~lH~~~ivHrDlkp~N  125 (323)
T cd05571          76 YANGGELFFHLSRE--RVFSEDR----------------------------ARFYGAEIVSALGYLHSCDVVYRDLKLEN  125 (323)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeEeCCCCHHH
Confidence            99999999888654  2233222                            23678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.....                                                         
T Consensus       126 Ill~~~~~~kl~DfG~a~~~~~~---------------------------------------------------------  148 (323)
T cd05571         126 LMLDKDGHIKITDFGLCKEGISD---------------------------------------------------------  148 (323)
T ss_pred             EEECCCCCEEEeeCCCCcccccC---------------------------------------------------------
Confidence            99999999999999998421100                                                         


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                           .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+.......+
T Consensus       149 ---------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~  207 (323)
T cd05571         149 ---------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELI  207 (323)
T ss_pred             ---------------------CCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHH
Confidence                                 01122457999999999999999999999999999999999999999988888877777


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEVP  481 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~~  481 (517)
                      ......+|...         ..++.+||.+||+.||++||+.. ..+.++++||||++++|..+.  ...||..|
T Consensus       208 ~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~~~~~~~~~~~~~~~~  273 (323)
T cd05571         208 LMEEIRFPRTL---------SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLEPPFKP  273 (323)
T ss_pred             HcCCCCCCCCC---------CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCC
Confidence            77666555321         22589999999999999999532 234599999999999999774  44455443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-50  Score=411.33  Aligned_cols=321  Identities=34%  Similarity=0.621  Sum_probs=229.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+++.++||||++++++|.+..+
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKD-----TGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECC-----CCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCe
Confidence            479999999999999999999886     678999999987655555566778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||||||+||+|.+++...  ..+.+..                            ++.|+.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~~~~ql~~aL~~LH~~givHr  125 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIKY--DTFSEDV----------------------------TRFYMAECVLAIEAVHKLGFIHR  125 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecc
Confidence            99999999999999988653  2233222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++.+.......          .+..........         .  .   .........
T Consensus       126 Dlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~----------~~~~~~~~~~~~---------~--~---~~~~~~~~~  181 (377)
T cd05629         126 DIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSA----------YYQKLLQGKSNK---------N--R---IDNRNSVAV  181 (377)
T ss_pred             CCCHHHEEECCCCCEEEeecccccccccccccc----------cccccccccccc---------c--c---ccccccccc
Confidence            999999999999999999999985432111000          000000000000         0  0   000000000


Q ss_pred             cccccccCCCCCCccccCCcccc---ccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVV---AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                      .....          ...+....   ...........+||+.|+|||++.+..++.++|||||||++|||++|.+||.+.
T Consensus       182 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (377)
T cd05629         182 DSINL----------TMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             ccccc----------cccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCC
Confidence            00000          00000000   000001122468999999999999988999999999999999999999999988


Q ss_pred             ChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCC
Q 010140          401 NNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       401 ~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      +..+.+..+....  ..+|...       ....++.+||.+||. +|.+|++. ..+.|+++||||++++|+.++.+.+|
T Consensus       252 ~~~~~~~~i~~~~~~~~~p~~~-------~~s~~~~dli~~lL~-~~~~r~~r-~~~~~~l~hp~~~~~~~~~~~~~~~~  322 (377)
T cd05629         252 NSHETYRKIINWRETLYFPDDI-------HLSVEAEDLIRRLIT-NAENRLGR-GGAHEIKSHPFFRGVDWDTIRQIRAP  322 (377)
T ss_pred             CHHHHHHHHHccCCccCCCCCC-------CCCHHHHHHHHHHhc-CHhhcCCC-CCHHHHhcCCCcCCCCHHHHccCCCC
Confidence            8877777776532  2233211       112358999999997 88887632 12349999999999999999988888


Q ss_pred             CCCC
Q 010140          479 EVPN  482 (517)
Q Consensus       479 ~~~~  482 (517)
                      .+|.
T Consensus       323 ~~~~  326 (377)
T cd05629         323 FIPQ  326 (377)
T ss_pred             cccC
Confidence            8765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-51  Score=391.83  Aligned_cols=284  Identities=37%  Similarity=0.622  Sum_probs=244.4

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..+.|+.-++||+|+||.||-|+.+.     +++.||+|.+.+.....+........|..||.+++.+.||.|-..|+
T Consensus       181 pvt~n~F~~~RvlGkGGFGEV~acqvra-----TGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfe  255 (591)
T KOG0986|consen  181 PVTKNTFRVYRVLGKGGFGEVCACQVRA-----TGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFE  255 (591)
T ss_pred             hccccceeeeEEEecccccceeEEEEec-----chhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeec
Confidence            3567889999999999999999999987     88999999999998887777778888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      ..+.+||||..|+||||.-+|...+...+.+..+.                            +|+++|+.||++||.++
T Consensus       256 Tkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~----------------------------FYAAEi~cGLehlH~~~  307 (591)
T KOG0986|consen  256 TKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRAR----------------------------FYAAEIICGLEHLHRRR  307 (591)
T ss_pred             CCCceEEEEEeecCCceeEEeeccCCCCCchHHHH----------------------------HHHHHHHhhHHHHHhcc
Confidence            99999999999999999887777665555555443                            89999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||.|||||+|||+|+.|++.|+|.|+|..+..                                                
T Consensus       308 iVYRDLKPeNILLDd~GhvRISDLGLAvei~~------------------------------------------------  339 (591)
T KOG0986|consen  308 IVYRDLKPENILLDDHGHVRISDLGLAVEIPE------------------------------------------------  339 (591)
T ss_pred             eeeccCChhheeeccCCCeEeeccceEEecCC------------------------------------------------
Confidence            99999999999999999999999999944331                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .......+||.+|||||++.+..|+...|+|||||+||||+.|+.||..
T Consensus       340 -------------------------------g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~  388 (591)
T KOG0986|consen  340 -------------------------------GKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ  388 (591)
T ss_pred             -------------------------------CCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh
Confidence                                           1122344899999999999999999999999999999999999999986


Q ss_pred             CCh----HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--
Q 010140          400 ENN----EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--  472 (517)
Q Consensus       400 ~~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--  472 (517)
                      ..+    +++-++++..+..++..-         +.++++|++.+|.+||.+|++.. +.+.++++||||++++|..+  
T Consensus       389 ~KeKvk~eEvdrr~~~~~~ey~~kF---------S~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rlea  459 (591)
T KOG0986|consen  389 RKEKVKREEVDRRTLEDPEEYSDKF---------SEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEA  459 (591)
T ss_pred             hhhhhhHHHHHHHHhcchhhccccc---------CHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhc
Confidence            533    355566666666665322         23589999999999999999987 67889999999999999977  


Q ss_pred             cCCCCCCCCCCc
Q 010140          473 RSIKPPEVPNND  484 (517)
Q Consensus       473 ~~~~p~~~~~~~  484 (517)
                      .-+.||++|...
T Consensus       460 gml~PPfiPdp~  471 (591)
T KOG0986|consen  460 GMLEPPFIPDPG  471 (591)
T ss_pred             cCCCCCCCCCcc
Confidence            557899998753

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-50  Score=402.74  Aligned_cols=276  Identities=35%  Similarity=0.588  Sum_probs=229.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++.+...........+..|+.++..++||||+++++++..++.
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKD-----TGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCE
Confidence            479999999999999999999886     678999999987765544556777889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .||||||++||+|.+++....  .+....                            .+.++.||+.||.|||++||+||
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~--~l~~~~----------------------------~~~~~~qi~~~l~~lH~~~ivH~  125 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNNLG--VLSEDH----------------------------ARFYMAEMFEAVDALHELGYIHR  125 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcccc
Confidence            999999999999999986542  222222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||++.....                                                    
T Consensus       126 dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----------------------------------------------------  153 (333)
T cd05600         126 DLKPENFLIDASGHIKLTDFGLSKGIVT----------------------------------------------------  153 (333)
T ss_pred             CCCHHHEEECCCCCEEEEeCcCCccccc----------------------------------------------------
Confidence            9999999999999999999999843210                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                   .....+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..
T Consensus       154 -----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~  204 (333)
T cd05600         154 -----------------------------YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN  204 (333)
T ss_pred             -----------------------------ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHH
Confidence                                         122346999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHhcCCCC--CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCC
Q 010140          404 KTLINILKKPLT--FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP  481 (517)
Q Consensus       404 ~~~~~i~~~~~~--~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~  481 (517)
                      +.+..+......  .|.....   ......++.+||.+||..+|.+||++.    ++++||||++++|..+....||.+|
T Consensus       205 ~~~~~i~~~~~~~~~~~~~~~---~~~~s~~~~~li~~~l~~~~~rr~s~~----~ll~h~~~~~~~~~~~~~~~~~~~~  277 (333)
T cd05600         205 ETWENLKYWKETLQRPVYDDP---RFNLSDEAWDLITKLINDPSRRFGSLE----DIKNHPFFKEVDWNELRELKPPFVP  277 (333)
T ss_pred             HHHHHHHhccccccCCCCCcc---ccccCHHHHHHHHHHhhChhhhcCCHH----HHHhCcccCCCCHHHHhhCCCCCCC
Confidence            777766543221  1211110   012234589999999999999999987    9999999999999999888888776


Q ss_pred             C
Q 010140          482 N  482 (517)
Q Consensus       482 ~  482 (517)
                      .
T Consensus       278 ~  278 (333)
T cd05600         278 E  278 (333)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-51  Score=390.66  Aligned_cols=282  Identities=36%  Similarity=0.669  Sum_probs=244.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      ++...+|.++.+||+|+||.|.+|..++     +.+.||||+++++........+--..|.++|... +-|.+++|+.+|
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkg-----tdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScF  419 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKG-----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCF  419 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccC-----cchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHh
Confidence            4556789999999999999999999887     7889999999988766566666666788888877 578999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      +.-+.+|+||||+.||||.-.++..  .++.++.+.                            +|+.+|+-||-|||++
T Consensus       420 QTmDRLyFVMEyvnGGDLMyhiQQ~--GkFKEp~Av----------------------------FYAaEiaigLFFLh~k  469 (683)
T KOG0696|consen  420 QTMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPVAV----------------------------FYAAEIAIGLFFLHSK  469 (683)
T ss_pred             hhhhheeeEEEEecCchhhhHHHHh--cccCCchhh----------------------------hhhHHHHHHhhhhhcC
Confidence            9999999999999999998888765  455555554                            7899999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||.||||.+|||++.+|++||+|||+++.-.                                                
T Consensus       470 gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni------------------------------------------------  501 (683)
T KOG0696|consen  470 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI------------------------------------------------  501 (683)
T ss_pred             CeeeeeccccceEeccCCceEeeecccccccc------------------------------------------------
Confidence            99999999999999999999999999983210                                                


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                    .....+.++||||.|+|||++..++|+.++|+||+||+||||+.|++||+
T Consensus       502 ------------------------------~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFd  551 (683)
T KOG0696|consen  502 ------------------------------FDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD  551 (683)
T ss_pred             ------------------------------cCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCC
Confidence                                          11234568899999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSI  475 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~  475 (517)
                      ++++.++++.|......+|....         .++.+++..+|.+.|.+|++.. .+-.++..||||+.|||+.+  +.+
T Consensus       552 GeDE~elF~aI~ehnvsyPKslS---------kEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~ei  622 (683)
T KOG0696|consen  552 GEDEDELFQAIMEHNVSYPKSLS---------KEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERREI  622 (683)
T ss_pred             CCCHHHHHHHHHHccCcCccccc---------HHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHHhhccC
Confidence            99999999999999988886432         2588999999999999999975 33468999999999999988  668


Q ss_pred             CCCCCCCC
Q 010140          476 KPPEVPNN  483 (517)
Q Consensus       476 ~p~~~~~~  483 (517)
                      .||+.|..
T Consensus       623 qPPfkPk~  630 (683)
T KOG0696|consen  623 QPPFKPKI  630 (683)
T ss_pred             CCCCCCcc
Confidence            89987764

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.8e-51  Score=388.03  Aligned_cols=257  Identities=30%  Similarity=0.536  Sum_probs=228.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      -+|++.+.||+|+||.|-+|..+.     .++.||||.++++.......+-++.+|++||..|+||||+.+|++|++.+.
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~-----sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdK  127 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHK-----SGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDK  127 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhcc-----CCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCce
Confidence            479999999999999999999876     789999999999998888888899999999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      ..|||||..+|+|++|+...  ..+++.++                            |++.+||+.|+.|+|.++++||
T Consensus       128 IvivMEYaS~GeLYDYiSer--~~LsErEa----------------------------RhfFRQIvSAVhYCHknrVvHR  177 (668)
T KOG0611|consen  128 IVIVMEYASGGELYDYISER--GSLSEREA----------------------------RHFFRQIVSAVHYCHKNRVVHR  177 (668)
T ss_pred             EEEEEEecCCccHHHHHHHh--ccccHHHH----------------------------HHHHHHHHHHHHHHhhccceec
Confidence            99999999999999999875  45555555                            4778999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||.+|||+|.++++||+|||++..+..                                                    
T Consensus       178 DLKLENILLD~N~NiKIADFGLSNly~~----------------------------------------------------  205 (668)
T KOG0611|consen  178 DLKLENILLDQNNNIKIADFGLSNLYAD----------------------------------------------------  205 (668)
T ss_pred             ccchhheeecCCCCeeeeccchhhhhcc----------------------------------------------------
Confidence            9999999999999999999999843321                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 .....++||+|.|.+||++.|.+| ++.+|.|||||+||.|+.|..||+|.+.
T Consensus       206 ---------------------------~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh  258 (668)
T KOG0611|consen  206 ---------------------------KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH  258 (668)
T ss_pred             ---------------------------ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH
Confidence                                       123467899999999999999998 8899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      ..+..+|..+.+..|....          ++.-||+.||..||++|.|++    ++-.|=|   ++|..
T Consensus       259 k~lvrQIs~GaYrEP~~PS----------dA~gLIRwmLmVNP~RRATie----DiAsHWW---vNwgy  310 (668)
T KOG0611|consen  259 KRLVRQISRGAYREPETPS----------DASGLIRWMLMVNPERRATIE----DIASHWW---VNWGY  310 (668)
T ss_pred             HHHHHHhhcccccCCCCCc----------hHHHHHHHHHhcCcccchhHH----HHhhhhe---eeccc
Confidence            9999999988776664332          378999999999999999998    8999966   45553

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.7e-49  Score=396.01  Aligned_cols=274  Identities=39%  Similarity=0.720  Sum_probs=223.3

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHH---HhcCCCCccceeeeeecCc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL---TMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il---~~l~HpnIv~l~~~~~~~~  162 (517)
                      |++++.||+|+||.||+|+++.     +++.||||++++...........+..|+.++   +.++||||+++++++...+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKK-----TGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTED   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC
Confidence            7899999999999999999886     6789999999876544444555666676655   4568999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++||+|..++..   ..+.+...                            +.++.||+.||+|||++||+|
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~---~~l~~~~~----------------------------~~~~~qi~~al~~lH~~~ivH  124 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHT---DVFSEPRA----------------------------VFYAACVVLGLQYLHENKIVY  124 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhc---CCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeEe
Confidence            99999999999999877653   22333222                            367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++....                                                   
T Consensus       125 rdlkp~Nill~~~~~~kL~Dfg~~~~~~~---------------------------------------------------  153 (324)
T cd05589         125 RDLKLDNLLLDTEGFVKIADFGLCKEGMG---------------------------------------------------  153 (324)
T ss_pred             cCCCHHHeEECCCCcEEeCcccCCccCCC---------------------------------------------------
Confidence            99999999999999999999998732110                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 ........+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.
T Consensus       154 ---------------------------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~  206 (324)
T cd05589         154 ---------------------------FGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE  206 (324)
T ss_pred             ---------------------------CCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH
Confidence                                       00112345799999999999998899999999999999999999999999888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc--cCCCCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI--RSIKPPE  479 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~--~~~~p~~  479 (517)
                      .+.+..+......+|...         ...+.+||.+||+.||.+||+..+ .+.++++||||++++|...  +.+.||.
T Consensus       207 ~~~~~~i~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~  277 (324)
T cd05589         207 EEVFDSIVNDEVRYPRFL---------SREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARKIKPPF  277 (324)
T ss_pred             HHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCCCHHHHHhCCCCcCc
Confidence            888888877766555322         124899999999999999997653 4679999999999999865  4455666


Q ss_pred             CCC
Q 010140          480 VPN  482 (517)
Q Consensus       480 ~~~  482 (517)
                      .|.
T Consensus       278 ~~~  280 (324)
T cd05589         278 VPT  280 (324)
T ss_pred             cCC
Confidence            554

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.8e-49  Score=396.54  Aligned_cols=272  Identities=39%  Similarity=0.722  Sum_probs=222.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||||++.+...........+..|..++..+ +||||+++++++...+.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKE-----SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcC-----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEE
Confidence            469999999999999886     6789999999876554445556667788888876 7999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+.+...                            +.++.||+.||+|||++||+||||||+
T Consensus        76 Ey~~~g~L~~~i~~~--~~l~~~~~----------------------------~~~~~ql~~~L~~lH~~~ivH~dlkp~  125 (320)
T cd05590          76 EFVNGGDLMFHIQKS--RRFDEARA----------------------------RFYAAEITSALMFLHDKGIIYRDLKLD  125 (320)
T ss_pred             cCCCCchHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEeCCCCHH
Confidence            999999999888654  22333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 NIli~~~~~~kL~DfG~~~~~~~~--------------------------------------------------------  149 (320)
T cd05590         126 NVLLDHEGHCKLADFGMCKEGIFN--------------------------------------------------------  149 (320)
T ss_pred             HeEECCCCcEEEeeCCCCeecCcC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~  207 (320)
T cd05590         150 ----------------------GKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEA  207 (320)
T ss_pred             ----------------------CCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHH
Confidence                                  0012234699999999999998899999999999999999999999999998888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC--ChHHhhcCCCcCCCCcccc--cCCCCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHEFFKGINWALI--RSIKPPEVPNN  483 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~--~~~ell~hp~f~~~~~~~~--~~~~p~~~~~~  483 (517)
                      +......+|...         ..++.+||.+||+.||.+|+++.+  ..+++++||||++++|..+  +.+.||+.|..
T Consensus       208 i~~~~~~~~~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~  277 (320)
T cd05590         208 ILNDEVVYPTWL---------SQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNRRQIEPPFRPRI  277 (320)
T ss_pred             HhcCCCCCCCCC---------CHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCC
Confidence            887766554321         124899999999999999999832  2359999999999999876  34566666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.1e-49  Score=405.91  Aligned_cols=323  Identities=31%  Similarity=0.518  Sum_probs=228.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+++.++||||+++++.|.+++.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~   76 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVD-----TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNL   76 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECC-----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEE
Confidence            69999999999999999999886     6789999999877655556677888899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+|||||+||+|.+++.+.  ..++...                            ++.++.||+.||+|||++||+|||
T Consensus        77 ~lv~E~~~gg~L~~~l~~~--~~~~e~~----------------------------~~~~~~qi~~al~~lH~~~ivHrD  126 (382)
T cd05625          77 YFVMDYIPGGDMMSLLIRM--GIFPEDL----------------------------ARFYIAELTCAVESVHKMGFIHRD  126 (382)
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecCC
Confidence            9999999999999988654  2222222                            246789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+|||++.+|.+||+|||++..+.........           ...        ..........+.    ......  
T Consensus       127 lKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~-----------~~~--------~~~~~~~~~~~~----~~~~~~--  181 (382)
T cd05625         127 IKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY-----------QSG--------DHVRQDSMDFSN----EWGDPA--  181 (382)
T ss_pred             CCHHHEEECCCCCEEEeECCCCcccccccccccc-----------ccc--------cccccccccccc----cccccc--
Confidence            9999999999999999999998543211100000           000        000000000000    000000  


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                            .....+...................+.+||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~  255 (382)
T cd05625         182 ------NCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLE  255 (382)
T ss_pred             ------cccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHH
Confidence                  00000000000000000011112345689999999999999999999999999999999999999999988877


Q ss_pred             HHHHHhcCCC--CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc-ccCCCCCCCC
Q 010140          405 TLINILKKPL--TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL-IRSIKPPEVP  481 (517)
Q Consensus       405 ~~~~i~~~~~--~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~-~~~~~p~~~~  481 (517)
                      ...++.....  .+|....       ...++.+||.+|+ .||.+|++. ..+.|+++||||++++|.. +....+|..|
T Consensus       256 ~~~~i~~~~~~~~~p~~~~-------~s~~~~~li~~l~-~~p~~R~~~-~~~~ei~~hp~f~~~~~~~~~~~~~~~~~~  326 (382)
T cd05625         256 TQMKVINWQTSLHIPPQAK-------LSPEASDLIIKLC-RGPEDRLGK-NGADEIKAHPFFKTIDFSSDLRQQSAPYIP  326 (382)
T ss_pred             HHHHHHccCCCcCCCCccc-------CCHHHHHHHHHHc-cCHhHcCCC-CCHHHHhcCCCcCCcChHHHHhcCCCCccC
Confidence            7777765332  2222111       1235889999987 599999983 3455999999999999985 4555666655


Q ss_pred             C
Q 010140          482 N  482 (517)
Q Consensus       482 ~  482 (517)
                      .
T Consensus       327 ~  327 (382)
T cd05625         327 K  327 (382)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3e-49  Score=395.56  Aligned_cols=276  Identities=36%  Similarity=0.677  Sum_probs=227.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  163 (517)
                      +|++++.||+|+||.||+|+++.     +++.||||++.+..............|..++..+ +|++|+++++++...+.
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKG-----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDR   75 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCE
Confidence            58999999999999999999886     6789999999876554444555666788888877 68999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||+++|+|..++....  .+.+..                            ++.++.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~~--~~~~~~----------------------------~~~~~~qi~~aL~~LH~~~ivHr  125 (323)
T cd05616          76 LYFVMEYVNGGDLMYQIQQVG--RFKEPH----------------------------AVFYAAEIAIGLFFLHSKGIIYR  125 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEEec
Confidence            999999999999998886542  233222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++.....                                                   
T Consensus       126 Dlkp~Nill~~~~~~kL~DfG~~~~~~~~---------------------------------------------------  154 (323)
T cd05616         126 DLKLDNVMLDSEGHIKIADFGMCKENMWD---------------------------------------------------  154 (323)
T ss_pred             CCCHHHeEECCCCcEEEccCCCceecCCC---------------------------------------------------
Confidence            99999999999999999999998421100                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       155 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~  207 (323)
T cd05616         155 ---------------------------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED  207 (323)
T ss_pred             ---------------------------CCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH
Confidence                                       01122457999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      ..+..+......+|...         ..++.+||.+||+.||.+|++.. ....++++||||+.++|..+.  .+.||+.
T Consensus       208 ~~~~~i~~~~~~~p~~~---------s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~  278 (323)
T cd05616         208 ELFQSIMEHNVAYPKSM---------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPYK  278 (323)
T ss_pred             HHHHHHHhCCCCCCCcC---------CHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcC
Confidence            88888887766655421         22589999999999999999974 235699999999999999774  4556665


Q ss_pred             CC
Q 010140          481 PN  482 (517)
Q Consensus       481 ~~  482 (517)
                      |.
T Consensus       279 ~~  280 (323)
T cd05616         279 PK  280 (323)
T ss_pred             Cc
Confidence            54

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2e-49  Score=396.97  Aligned_cols=276  Identities=36%  Similarity=0.685  Sum_probs=225.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC-CCccceeeeeecCce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH-PFLPTLYAEFEASHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~~~  163 (517)
                      +|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|+.++..+.| ++|+++++++...+.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKG-----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   75 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCE
Confidence            58999999999999999999886     678899999987755444556677789999999976 468899999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++||+|..++....  .+.+...                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~~--~~~~~~~----------------------------~~~~~qi~~al~~lH~~~ivH~  125 (324)
T cd05587          76 LYFVMEYVNGGDLMYHIQQVG--KFKEPHA----------------------------VFYAAEIAIGLFFLHSKGIIYR  125 (324)
T ss_pred             EEEEEcCCCCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEec
Confidence            999999999999998886542  2332222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+++.....                                                   
T Consensus       126 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~---------------------------------------------------  154 (324)
T cd05587         126 DLKLDNVMLDAEGHIKIADFGMCKENIFG---------------------------------------------------  154 (324)
T ss_pred             CCCHHHeEEcCCCCEEEeecCcceecCCC---------------------------------------------------
Confidence            99999999999999999999997321100                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..
T Consensus       155 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (324)
T cd05587         155 ---------------------------GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED  207 (324)
T ss_pred             ---------------------------CCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence                                       00112346999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      +.+..+......+|...         ..++.+||.+||+.||.+|++.. ....++++||||+.++|..+.  .+.+|..
T Consensus       208 ~~~~~i~~~~~~~~~~~---------~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~  278 (324)
T cd05587         208 ELFQSIMEHNVSYPKSL---------SKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLERREIQPPFK  278 (324)
T ss_pred             HHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcc
Confidence            88888887766555422         12489999999999999999974 234699999999999998773  3445544


Q ss_pred             CC
Q 010140          481 PN  482 (517)
Q Consensus       481 ~~  482 (517)
                      |.
T Consensus       279 ~~  280 (324)
T cd05587         279 PK  280 (324)
T ss_pred             Cc
Confidence            43

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-49  Score=395.85  Aligned_cols=267  Identities=41%  Similarity=0.741  Sum_probs=220.2

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||+|+||.||+|++..     +++.||+|++.+...........+.+|+.+|.+++||||+++++++...+..|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRD-----TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCC
Confidence            7999999999999886     67889999998765544555667788999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      +||+|.+++...  ..+.+...                            +.++.||+.||.|||++||+||||||+|||
T Consensus        76 ~~g~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~i~HrDlkp~Nil  125 (312)
T cd05585          76 NGGELFHHLQRE--GRFDLSRA----------------------------RFYTAELLCALENLHKFNVIYRDLKPENIL  125 (312)
T ss_pred             CCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeEeCCCCHHHeE
Confidence            999999988654  22333222                            367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.+||+|||+++.....                                                           
T Consensus       126 i~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------------------  146 (312)
T cd05585         126 LDYQGHIALCDFGLCKLNMKD-----------------------------------------------------------  146 (312)
T ss_pred             ECCCCcEEEEECcccccCccC-----------------------------------------------------------
Confidence            999999999999998421100                                                           


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhc
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK  411 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~  411 (517)
                                         .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.+..+..
T Consensus       147 -------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~  207 (312)
T cd05585         147 -------------------DDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQ  207 (312)
T ss_pred             -------------------CCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHc
Confidence                               0112345799999999999999999999999999999999999999999888888888887


Q ss_pred             CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCCCCCCCC
Q 010140          412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPPEVP  481 (517)
Q Consensus       412 ~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~~p~~~~  481 (517)
                      ....+|...         ..++.+||.+||..||.+||+. ..+.|+++||||+..+|..+  +...++..|
T Consensus       208 ~~~~~~~~~---------~~~~~~li~~~L~~dp~~R~~~-~~~~e~l~hp~~~~~~~~~~~~~~~~~~~~~  269 (312)
T cd05585         208 EPLRFPDGF---------DRDAKDLLIGLLSRDPTRRLGY-NGAQEIKNHPFFSQLSWKKLLMKGIQPPFKP  269 (312)
T ss_pred             CCCCCCCcC---------CHHHHHHHHHHcCCCHHHcCCC-CCHHHHHcCCCcCCCCHHHHHhCCCCCCcCC
Confidence            766655422         1248999999999999999986 34569999999999999755  333444433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.4e-49  Score=406.47  Aligned_cols=322  Identities=31%  Similarity=0.527  Sum_probs=226.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||+++++.|.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~   75 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVD-----TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDN   75 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECC-----CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCE
Confidence            479999999999999999999886     678999999987665545556778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+|||||+||+|.+++....  .++...                            ++.++.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~~g~L~~~i~~~~--~~~~~~----------------------------~~~~~~qi~~al~~lH~~~ivHr  125 (376)
T cd05598          76 LYFVMDYIPGGDMMSLLIRLG--IFEEDL----------------------------ARFYIAELTCAIESVHKMGFIHR  125 (376)
T ss_pred             EEEEEeCCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEeC
Confidence            999999999999999986642  222222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+|..+........          + ............       .....          
T Consensus       126 Dlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~----------~-~~~~~~~~~~~~-------~~~~~----------  177 (376)
T cd05598         126 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKY----------Y-QKGDHHRQDSME-------PSEEW----------  177 (376)
T ss_pred             CCCHHHEEECCCCCEEEEeCCCCccccccccccc----------c-cccccccccccc-------ccccc----------
Confidence            9999999999999999999999854321100000          0 000000000000       00000          


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                            ..........+... .............+||+.|||||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       178 ------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  250 (376)
T cd05598         178 ------SEIDRCRLKPLERR-RKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPA  250 (376)
T ss_pred             ------cccccccccchhhh-hhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHH
Confidence                  00000000000000 00000111234568999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc-cCCCCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI-RSIKPPEVPN  482 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~-~~~~p~~~~~  482 (517)
                      +....+.......+.....     ....++.+||.+|+ .+|.+|++. ..+.|+++||||++++|..+ +...+|.+|.
T Consensus       251 ~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~l~-~~p~~R~~~-~t~~ell~h~~~~~~~~~~~~~~~~~~~~~~  323 (376)
T cd05598         251 ETQLKVINWETTLHIPSQA-----KLSREASDLILRLC-CGAEDRLGK-NGADEIKAHPFFKGIDFASLIRRQKAPYIPK  323 (376)
T ss_pred             HHHHHHhccCccccCCCCC-----CCCHHHHHHHHHHh-cCHhhcCCC-CCHHHHhCCCCcCCCCHHHHhhcCCCCCCCc
Confidence            7766665433222111111     12235889999977 599999932 12339999999999999977 5566666554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-50  Score=388.92  Aligned_cols=262  Identities=31%  Similarity=0.473  Sum_probs=209.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      .++...+.||+|+||.||++.+.+     ++..+|||.+......   ..+.+.+|+.+|++++|||||+++|...... 
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~-----~g~~~AvK~v~~~~~~---~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~   88 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKK-----TGELMAVKSVELEDSP---TSESLEREIRILSRLNHPNIVQYYGSSSSREN   88 (313)
T ss_pred             chhhhhccccCccceEEEEEEecC-----CCcceeeeeeecccch---hHHHHHHHHHHHHhCCCCCEEeeCCccccccC
Confidence            457888999999999999999987     5788999999765222   1566778999999999999999999754444 


Q ss_pred             -eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          163 -YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       163 -~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                       .++++|||++||+|.+++....+ .++++.++                            .|++||++||+|||++|||
T Consensus        89 ~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~----------------------------~ytr~iL~GL~ylHs~g~v  139 (313)
T KOG0198|consen   89 DEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVR----------------------------RYTRQILEGLAYLHSKGIV  139 (313)
T ss_pred             eeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHH----------------------------HHHHHHHHHHHHHHhCCEe
Confidence             69999999999999999998765 56655444                            7899999999999999999


Q ss_pred             eccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||+|||++. +|.+||+|||+++......                                               
T Consensus       140 H~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~-----------------------------------------------  172 (313)
T KOG0198|consen  140 HCDIKPANILLDPSNGDVKLADFGLAKKLESKG-----------------------------------------------  172 (313)
T ss_pred             ccCcccceEEEeCCCCeEEeccCcccccccccc-----------------------------------------------
Confidence            9999999999999 7999999999985433100                                               


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                  ........+.||+.|||||++... ....++|||||||++.||+||.+||..
T Consensus       173 ----------------------------~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~  224 (313)
T KOG0198|consen  173 ----------------------------TKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSE  224 (313)
T ss_pred             ----------------------------ccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchh
Confidence                                        001122346799999999999953 234599999999999999999999987


Q ss_pred             -CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          400 -ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       400 -~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                       ....+.+..+.... ..|......+      .++++||.+||..||++|||+.    ++|+|||.+...
T Consensus       225 ~~~~~~~~~~ig~~~-~~P~ip~~ls------~~a~~Fl~~C~~~~p~~Rpta~----eLL~hpf~~~~~  283 (313)
T KOG0198|consen  225 FFEEAEALLLIGRED-SLPEIPDSLS------DEAKDFLRKCFKRDPEKRPTAE----ELLEHPFLKQNS  283 (313)
T ss_pred             hcchHHHHHHHhccC-CCCCCCcccC------HHHHHHHHHHhhcCcccCcCHH----HHhhChhhhccc
Confidence             45555555665544 2232222222      2589999999999999999998    999999997644

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=6.4e-49  Score=399.10  Aligned_cols=306  Identities=32%  Similarity=0.583  Sum_probs=227.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|+.++..++||||+++++.+.+.+.
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   75 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKD-----TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRN   75 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            479999999999999999999887     678999999987655555566778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||||||+||+|.+++...  ..+++..                            ++.|+.||+.||+|||++||+||
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~~L~~lH~~givHr  125 (360)
T cd05627          76 LYLIMEFLPGGDMMTLLMKK--DTLSEEA----------------------------TQFYIAETVLAIDAIHQLGFIHR  125 (360)
T ss_pred             EEEEEeCCCCccHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEcc
Confidence            99999999999999988654  2233222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+++.+........          +......      .+....+.....     .     
T Consensus       126 DLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~-----~-----  179 (360)
T cd05627         126 DIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEF----------YRNLTHN------PPSDFSFQNMNS-----K-----  179 (360)
T ss_pred             CCCHHHEEECCCCCEEEeeccCCccccccccccc----------ccccccC------Cccccccccccc-----c-----
Confidence            9999999999999999999999864431110000          0000000      000000000000     0     


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                       .................+||+.|+|||++.+..++.++|||||||++|||++|.+||.+.+..
T Consensus       180 -----------------~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~  242 (360)
T cd05627         180 -----------------RKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ  242 (360)
T ss_pred             -----------------cccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHH
Confidence                             000000000111223568999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCC
Q 010140          404 KTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIK  476 (517)
Q Consensus       404 ~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~  476 (517)
                      ..+.++....  ..+|....       ...++++||.+|+. ||.+|++. ..+.|+++||||++++|..+....
T Consensus       243 ~~~~~i~~~~~~~~~p~~~~-------~s~~~~~li~~l~~-~p~~R~~~-~~~~ei~~hp~f~~~~~~~~~~~~  308 (360)
T cd05627         243 ETYRKVMNWKETLVFPPEVP-------ISEKAKDLILRFCT-DSENRIGS-NGVEEIKSHPFFEGVDWGHIRERP  308 (360)
T ss_pred             HHHHHHHcCCCceecCCCCC-------CCHHHHHHHHHhcc-ChhhcCCC-CCHHHHhcCCCCCCCCHHHHhcCC
Confidence            8887777532  23332211       12258999999874 99999986 356699999999999999886544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3e-49  Score=404.40  Aligned_cols=321  Identities=31%  Similarity=0.500  Sum_probs=225.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++++.||+|+||+||+|+++.     +++.||||++.+...........+..|+.+|+.++||||+++++++.+.+++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~   76 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVD-----THALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNL   76 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEE
Confidence            69999999999999999999887     6789999999877665556677888899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+|||||+||+|.+++....  .+++..                            ++.++.||+.||+|||++||+|||
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~--~~~e~~----------------------------~~~~~~qi~~aL~~LH~~givHrD  126 (381)
T cd05626          77 YFVMDYIPGGDMMSLLIRME--VFPEVL----------------------------ARFYIAELTLAIESVHKMGFIHRD  126 (381)
T ss_pred             EEEEecCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeeecC
Confidence            99999999999999886642  222222                            246789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||||+.+|++||+|||+++.+.........           ..........+.+...+            ......
T Consensus       127 lKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~~~~~  183 (381)
T cd05626         127 IKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYY-----------QKGSHIRQDSMEPSDLW------------DDVSNC  183 (381)
T ss_pred             CcHHHEEECCCCCEEEeeCcCCcccccccccccc-----------cccccccccccCccccc------------cccccc
Confidence            9999999999999999999998543211100000           00000000000000000            000000


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                      ......       ..+.. ............+.+||+.|+|||++.+..++.++|||||||++|||++|..||...+..+
T Consensus       184 ~~~~~~-------~~~~~-~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~  255 (381)
T cd05626         184 RCGDRL-------KTLEQ-RATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTE  255 (381)
T ss_pred             cccccc-------chhhc-cccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHH
Confidence            000000       00000 0000001112345689999999999999889999999999999999999999999888777


Q ss_pred             HHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhcc--CCcccccCCCCChHHhhcCCCcCCCCcccc-cCCCCCC
Q 010140          405 TLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLV--KNPKKRIGSLKGSVEIKRHEFFKGINWALI-RSIKPPE  479 (517)
Q Consensus       405 ~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~--~dP~~R~t~~~~~~ell~hp~f~~~~~~~~-~~~~p~~  479 (517)
                      ....+....  ..+|....       ...++.+||.+||.  .++..|+++.    ++++||||++++|... +...+|.
T Consensus       256 ~~~~i~~~~~~~~~~~~~~-------~s~~~~dli~~ll~~~~~~~~R~~~~----~~l~hp~f~~~~~~~~~~~~~~~~  324 (381)
T cd05626         256 TQLKVINWENTLHIPPQVK-------LSPEAVDLITKLCCSAEERLGRNGAD----DIKAHPFFSEVDFSSDIRTQPAPY  324 (381)
T ss_pred             HHHHHHccccccCCCCCCC-------CCHHHHHHHHHHccCcccccCCCCHH----HHhcCcccCCCChhHHhhcCCCCc
Confidence            666665432  22332111       12358999999664  4555599987    9999999999999864 4555566


Q ss_pred             CCC
Q 010140          480 VPN  482 (517)
Q Consensus       480 ~~~  482 (517)
                      .|.
T Consensus       325 ~p~  327 (381)
T cd05626         325 VPK  327 (381)
T ss_pred             cCc
Confidence            554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-49  Score=402.42  Aligned_cols=303  Identities=38%  Similarity=0.650  Sum_probs=233.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++.+...........+..|+.++..++||||+++++++.++++
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKD-----TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECC-----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCe
Confidence            479999999999999999999886     678999999987765554566778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++||+|.+++...  ..++....                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~----------------------------~~i~~qi~~aL~~LH~~giiH~  125 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRK--DVFPEETA----------------------------RFYIAELVLALDSVHKLGFIHR  125 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeecc
Confidence            99999999999999998764  23333222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||++...............         .....+   ..               .      
T Consensus       126 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~---------~~~~~~---~~---------------~------  172 (350)
T cd05573         126 DIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLND---------SHNLLF---RD---------------N------  172 (350)
T ss_pred             CCCHHHeEECCCCCEEeecCCCCccCcccCcccccccc---------cccccc---cc---------------c------
Confidence            99999999999999999999998654322110000000         000000   00               0      


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                   ....   ...............||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       173 -------------~~~~---~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~  236 (350)
T cd05573         173 -------------VLVR---RRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQ  236 (350)
T ss_pred             -------------cccc---ccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHH
Confidence                         0000   000000011233457999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhc--CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccC-CCCChHHhhcCCCcCCCCcccccCCCCCCC
Q 010140          404 KTLINILK--KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALIRSIKPPEV  480 (517)
Q Consensus       404 ~~~~~i~~--~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t-~~~~~~ell~hp~f~~~~~~~~~~~~p~~~  480 (517)
                      ....++..  ....+|....       ...++.+||.+||. ||.+|++ +.    ++++||||++++|+......||.+
T Consensus       237 ~~~~~i~~~~~~~~~p~~~~-------~~~~~~~li~~ll~-dp~~R~~s~~----~ll~hp~~~~~~~~~~~~~~~~~~  304 (350)
T cd05573         237 ETYNKIINWKESLRFPPDPP-------VSPEAIDLICRLLC-DPEDRLGSFE----EIKSHPFFKGIDWENLRETKPPFV  304 (350)
T ss_pred             HHHHHHhccCCcccCCCCCC-------CCHHHHHHHHHHcc-ChhhcCCCHH----HHhcCCCcCCCCHHHHhhCCCCcC
Confidence            77777776  3333333221       12358999999997 9999999 77    999999999999998888778776


Q ss_pred             CC
Q 010140          481 PN  482 (517)
Q Consensus       481 ~~  482 (517)
                      |.
T Consensus       305 ~~  306 (350)
T cd05573         305 PE  306 (350)
T ss_pred             CC
Confidence            65

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-50  Score=401.11  Aligned_cols=257  Identities=26%  Similarity=0.415  Sum_probs=215.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ...|....+||+|+.|.||.|+...     +++.||||.+......   ..+-+..|+.+|+..+|+|||++++.|-..+
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~-----~~~~VaiK~m~l~~Q~---~keLilnEi~Vm~~~~H~NiVnfl~Sylv~d  343 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKIS-----TKQEVAIKRMDLRKQP---KKELLLNEILVMRDLHHPNIVNFLDSYLVGD  343 (550)
T ss_pred             hhhhcchhhhccccccceeeeeecc-----CCceEEEEEEEeccCC---chhhhHHHHHHHHhccchHHHHHHHHhcccc
Confidence            4679999999999999999999887     6778999999766433   2345667999999999999999999999889


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++||+|.+.+....                               +.+.++..++++++.||+|||.+||||
T Consensus       344 eLWVVMEym~ggsLTDvVt~~~-------------------------------~~E~qIA~Icre~l~aL~fLH~~gIiH  392 (550)
T KOG0578|consen  344 ELWVVMEYMEGGSLTDVVTKTR-------------------------------MTEGQIAAICREILQGLKFLHARGIIH  392 (550)
T ss_pred             eeEEEEeecCCCchhhhhhccc-------------------------------ccHHHHHHHHHHHHHHHHHHHhcceee
Confidence            9999999999999988776531                               223344578899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||||.+|||++.+|.+||+|||++..+...                                                  
T Consensus       393 rDIKSDnILL~~~g~vKltDFGFcaqi~~~--------------------------------------------------  422 (550)
T KOG0578|consen  393 RDIKSDNILLTMDGSVKLTDFGFCAQISEE--------------------------------------------------  422 (550)
T ss_pred             eccccceeEeccCCcEEEeeeeeeeccccc--------------------------------------------------
Confidence            999999999999999999999998543311                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ..+..+.+|||+|||||++....|++++||||||++++||+-|++||..+++
T Consensus       423 ----------------------------~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P  474 (550)
T KOG0578|consen  423 ----------------------------QSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP  474 (550)
T ss_pred             ----------------------------cCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh
Confidence                                        1234567899999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ...+..|.............      .+..++|||.+||+.|+++|+++.    |||+||||+.
T Consensus       475 lrAlyLIa~ng~P~lk~~~k------lS~~~kdFL~~cL~~dv~~RasA~----eLL~HpFl~~  528 (550)
T KOG0578|consen  475 LRALYLIATNGTPKLKNPEK------LSPELKDFLDRCLVVDVEQRASAK----ELLEHPFLKM  528 (550)
T ss_pred             HHHHHHHhhcCCCCcCCccc------cCHHHHHHHHHHhhcchhcCCCHH----HHhcChhhhh
Confidence            88887777644322222222      223599999999999999999998    9999999953

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.4e-49  Score=396.84  Aligned_cols=269  Identities=41%  Similarity=0.722  Sum_probs=218.9

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+|+.++||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKA-----SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEe
Confidence            469999999999999886     678999999987655545556777889999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|..++...  ..+.+..                            ++.++.||+.||+|||++||+||||||+|
T Consensus        76 y~~~g~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~aL~~LH~~~ivHrDikp~N  125 (328)
T cd05593          76 YVNGGELFFHLSRE--RVFSEDR----------------------------TRFYGAEIVSALDYLHSGKIVYRDLKLEN  125 (328)
T ss_pred             CCCCCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeEecccCHHH
Confidence            99999998887653  2232222                            23678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.....                                                         
T Consensus       126 Ill~~~~~~kL~DfG~~~~~~~~---------------------------------------------------------  148 (328)
T cd05593         126 LMLDKDGHIKITDFGLCKEGITD---------------------------------------------------------  148 (328)
T ss_pred             eEECCCCcEEEecCcCCccCCCc---------------------------------------------------------
Confidence            99999999999999997421100                                                         


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                           .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+
T Consensus       149 ---------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~  207 (328)
T cd05593         149 ---------------------AATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELI  207 (328)
T ss_pred             ---------------------ccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHh
Confidence                                 00112347999999999999888999999999999999999999999988887777777


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      ......+|...         ..++.+||.+||+.||++|++.. ..+.|+++||||.+++|..+.  ...||..
T Consensus       208 ~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~~~~~~~~~~~~  272 (328)
T cd05593         208 LMEDIKFPRTL---------SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVYDKKLVPPFK  272 (328)
T ss_pred             ccCCccCCCCC---------CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcC
Confidence            66665555321         22589999999999999998432 234599999999999998663  3344443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-49  Score=397.90  Aligned_cols=263  Identities=35%  Similarity=0.572  Sum_probs=229.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~  161 (517)
                      .+.|++.+.||+|.||.||+|+.+.     +++.||+|++.+...........+.+|+.||+++. |||||.++++|++.
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~-----tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~  108 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKS-----TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDP  108 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecC-----CCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcC
Confidence            4679999999999999999999997     68899999999887655555677888999999998 99999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ..+|+|||+|.||+|++.+...   .+++..+.                            .+++||+.|+.|||+.||+
T Consensus       109 ~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~----------------------------~~~~~il~av~~lH~~gvv  157 (382)
T KOG0032|consen  109 DSVYLVMELCEGGELFDRIVKK---HYSERDAA----------------------------GIIRQILEAVKYLHSLGVV  157 (382)
T ss_pred             CeEEEEEEecCCchHHHHHHHc---cCCHHHHH----------------------------HHHHHHHHHHHHHHhCCce
Confidence            9999999999999999998775   24443333                            6789999999999999999


Q ss_pred             eccCCCCceEEcc----CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          242 YRDLKPENVLVRE----DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       242 HrDLKp~NILl~~----~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ||||||+|+|+..    ++.+|++|||++.....                                              
T Consensus       158 HrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~----------------------------------------------  191 (382)
T KOG0032|consen  158 HRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP----------------------------------------------  191 (382)
T ss_pred             eccCCHHHeeeccccCCCCcEEEeeCCCceEccC----------------------------------------------
Confidence            9999999999963    35799999999854331                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       .......+||+.|+|||++.+..|+..+||||+||++|.|++|.+||
T Consensus       192 ---------------------------------~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF  238 (382)
T KOG0032|consen  192 ---------------------------------GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPF  238 (382)
T ss_pred             ---------------------------------CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCC
Confidence                                             22345679999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      .+.+......+|..+.+.++...+....     ..+++||.+||..||.+|+++.    ++|+|||+++..-
T Consensus       239 ~~~~~~~~~~~i~~~~~~f~~~~w~~is-----~~akd~i~~ll~~dp~~R~ta~----~~L~HpWi~~~~~  301 (382)
T KOG0032|consen  239 WGETEFEIFLAILRGDFDFTSEPWDDIS-----ESAKDFIRKLLEFDPRKRLTAA----QALQHPWIKSIGE  301 (382)
T ss_pred             cCCChhHHHHHHHcCCCCCCCCCccccC-----HHHHHHHHHhcccCcccCCCHH----HHhcCccccCCcc
Confidence            9999999999999998877766655433     3599999999999999999998    9999999987543

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=7.2e-49  Score=399.66  Aligned_cols=281  Identities=36%  Similarity=0.617  Sum_probs=226.9

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..++..++|++.+.||+|+||.||+|+++.     +++.||+|++.+...........+..|+.+++.++||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~  111 (370)
T cd05596          37 KLRMKAEDFDVIKVIGRGAFGEVQLVRHKS-----SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYA  111 (370)
T ss_pred             cCCCCHHHcEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEE
Confidence            455677899999999999999999999886     678999999987655444455567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+++.+|+|||||+||+|.+++...   .+++...                            +.++.||+.||+|||+
T Consensus       112 ~~~~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~----------------------------~~~~~qi~~aL~~LH~  160 (370)
T cd05596         112 FQDDKYLYMVMEYMPGGDLVNLMSNY---DIPEKWA----------------------------RFYTAEVVLALDAIHS  160 (370)
T ss_pred             EecCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653   2322222                            3677899999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.+|.+||+|||++.......                                            
T Consensus       161 ~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~--------------------------------------------  196 (370)
T cd05596         161 MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANG--------------------------------------------  196 (370)
T ss_pred             CCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCC--------------------------------------------
Confidence            999999999999999999999999999984322100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC----CCCccchHHHHHHHHHHHhhC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ----GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~----~~~~~~DiWSlGvil~elltG  393 (517)
                                                       .......+||+.|+|||++.+.    .++.++|||||||++|||++|
T Consensus       197 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG  243 (370)
T cd05596         197 ---------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVG  243 (370)
T ss_pred             ---------------------------------cccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhC
Confidence                                             0011234799999999999754    378899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCCCCc
Q 010140          394 TTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      .+||.+.+....+.++....  ..+|...       ..+.++.+||.+||+.+|.+  |+++.    |+++||||++.+|
T Consensus       244 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~-------~~s~~~~~li~~~L~~~p~r~~R~s~~----ell~h~~~~~~~~  312 (370)
T cd05596         244 DTPFYADSLVGTYSKIMDHKNSLTFPDDI-------EISKQAKDLICAFLTDREVRLGRNGVD----EIKSHPFFKNDQW  312 (370)
T ss_pred             CCCcCCCCHHHHHHHHHcCCCcCCCCCcC-------CCCHHHHHHHHHHccChhhccCCCCHH----HHhcCcccCCCCh
Confidence            99999988888888887643  2333211       12235899999999999987  99887    9999999999888


Q ss_pred             cc--ccCCCCCCCCC
Q 010140          470 AL--IRSIKPPEVPN  482 (517)
Q Consensus       470 ~~--~~~~~p~~~~~  482 (517)
                      ..  ++...+|.+|.
T Consensus       313 ~~~~~~~~~~~~~p~  327 (370)
T cd05596         313 TFDNIRETVAPVVPE  327 (370)
T ss_pred             hhHHhcCCCcCccCc
Confidence            73  45556666554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=8e-49  Score=398.97  Aligned_cols=281  Identities=35%  Similarity=0.637  Sum_probs=223.1

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ......++|++.+.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+++.++||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~  111 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKS-----SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCA  111 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            445667899999999999999999999986     678999999987554444445567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.++..+|+|||||+||+|.+++...   .++....                            +.++.||+.||+|||+
T Consensus       112 ~~~~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~----------------------------~~~~~qil~aL~~LH~  160 (370)
T cd05621         112 FQDDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWA----------------------------KFYTAEVVLALDAIHS  160 (370)
T ss_pred             EEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653   2332222                            3678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++......                                            
T Consensus       161 ~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~--------------------------------------------  196 (370)
T cd05621         161 MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETG--------------------------------------------  196 (370)
T ss_pred             CCeEecCCCHHHEEECCCCCEEEEecccceecccCC--------------------------------------------
Confidence            999999999999999999999999999984322100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----CCccchHHHHHHHHHHHhhC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----~~~~~DiWSlGvil~elltG  393 (517)
                                                       .......+||+.|+|||++.+..    ++.++|||||||++|+|++|
T Consensus       197 ---------------------------------~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G  243 (370)
T cd05621         197 ---------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVG  243 (370)
T ss_pred             ---------------------------------ceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhC
Confidence                                             00113457999999999997643    78899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCCCCc
Q 010140          394 TTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      ..||.+.+....+.++....  ..+|...       .....+++||.+||..++.+  |+++.    |+++||||+..+|
T Consensus       244 ~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~-------~~s~~~~~li~~~L~~~~~r~~R~~~~----e~l~hp~~~~~~~  312 (370)
T cd05621         244 DTPFYADSLVGTYSKIMDHKNSLNFPEDV-------EISKHAKNLICAFLTDREVRLGRNGVE----EIKQHPFFKNDQW  312 (370)
T ss_pred             CCCCCCCCHHHHHHHHHhCCcccCCCCcc-------cCCHHHHHHHHHHccCchhccCCCCHH----HHhcCcccCCCCc
Confidence            99999988888888887643  2333211       12235899999999855433  66776    9999999998655


Q ss_pred             c--cccCCCCCCCCC
Q 010140          470 A--LIRSIKPPEVPN  482 (517)
Q Consensus       470 ~--~~~~~~p~~~~~  482 (517)
                      .  .++...+|..|.
T Consensus       313 ~~~~~~~~~~~~~p~  327 (370)
T cd05621         313 NWDNIRETAAPVVPE  327 (370)
T ss_pred             ChHhcCCCCCCcCCC
Confidence            4  555666676665

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.9e-48  Score=389.65  Aligned_cols=276  Identities=36%  Similarity=0.689  Sum_probs=226.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  163 (517)
                      +|++.+.||+|+||.||+|+++.     +++.||||++.+...........+..|..++..+. |++|+++++++...+.
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKG-----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDR   75 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCE
Confidence            47899999999999999999886     67899999998765544455566777888988885 6788899999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++||+|..++...  ..+++..+                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~----------------------------~~i~~qi~~al~~lH~~~ivHr  125 (323)
T cd05615          76 LYFVMEYVNGGDLMYHIQQV--GKFKEPQA----------------------------VFYAAEISVGLFFLHRRGIIYR  125 (323)
T ss_pred             EEEEEcCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeecc
Confidence            99999999999999888654  22333222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++.....                                                   
T Consensus       126 Dikp~Nill~~~~~ikL~Dfg~~~~~~~~---------------------------------------------------  154 (323)
T cd05615         126 DLKLDNVMLDSEGHIKIADFGMCKEHMVD---------------------------------------------------  154 (323)
T ss_pred             CCCHHHeEECCCCCEEEeccccccccCCC---------------------------------------------------
Confidence            99999999999999999999997421100                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       155 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (323)
T cd05615         155 ---------------------------GVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED  207 (323)
T ss_pred             ---------------------------CccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence                                       00122346999999999999988999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      .....+......+|...         ..++.+|+.+||+.||.+|++..+ ...++++||||+.++|..+.  .+.+|+.
T Consensus       208 ~~~~~i~~~~~~~p~~~---------~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~  278 (323)
T cd05615         208 ELFQSIMEHNVSYPKSL---------SKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKLENREIQPPFK  278 (323)
T ss_pred             HHHHHHHhCCCCCCccC---------CHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCCCHHHHhcCCCCcCcc
Confidence            88888887766555322         124899999999999999999753 45799999999999999774  3556665


Q ss_pred             CC
Q 010140          481 PN  482 (517)
Q Consensus       481 ~~  482 (517)
                      |.
T Consensus       279 ~~  280 (323)
T cd05615         279 PK  280 (323)
T ss_pred             Cc
Confidence            54

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=4.7e-49  Score=393.98  Aligned_cols=269  Identities=39%  Similarity=0.696  Sum_probs=219.3

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+++.++||||++++++|...+.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEe
Confidence            469999999999999876     678999999987755545556677789999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|..++...  ..+.+..                            ++.++.||+.||+|||++||+||||||+|
T Consensus        76 ~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~aL~~LH~~~ivH~Dlkp~N  125 (323)
T cd05595          76 YANGGELFFHLSRE--RVFTEER----------------------------ARFYGAEIVSALEYLHSRDVVYRDIKLEN  125 (323)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEecCCCHHH
Confidence            99999998887653  2232222                            24678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.....                                                         
T Consensus       126 Ill~~~~~~kL~Dfg~~~~~~~~---------------------------------------------------------  148 (323)
T cd05595         126 LMLDKDGHIKITDFGLCKEGISD---------------------------------------------------------  148 (323)
T ss_pred             EEEcCCCCEEecccHHhccccCC---------------------------------------------------------
Confidence            99999999999999987321100                                                         


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                           ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+.......+
T Consensus       149 ---------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~  207 (323)
T cd05595         149 ---------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI  207 (323)
T ss_pred             ---------------------CCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                                 00112346999999999999988999999999999999999999999988888887777


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      ......+|...         ..++.+||.+||+.||.+|++.. ..+.++++||||.+++|..+.  ...||..
T Consensus       208 ~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~  272 (323)
T cd05595         208 LMEEIRFPRTL---------SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK  272 (323)
T ss_pred             hcCCCCCCCCC---------CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcC
Confidence            76665555321         22589999999999999999542 235699999999999998663  2344443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=5.5e-49  Score=394.90  Aligned_cols=276  Identities=38%  Similarity=0.647  Sum_probs=226.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|.+.+.||+|+||.||+|+++.     +++.||||++++...........+..|+.+++.++||||+++++++.+.+.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKA-----TGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCe
Confidence            479999999999999999999886     678999999987765445566677889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++||+|.+++.... ..+++...                            +.++.||+.||.|||++||+||
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~----------------------------~~~~~qi~~aL~~lH~~~i~H~  126 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRYE-DQFDEDMA----------------------------QFYLAELVLAIHSVHQMGYVHR  126 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHhc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEcc
Confidence            999999999999999987642 22332222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||++..+.....                                                 
T Consensus       127 Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~-------------------------------------------------  157 (330)
T cd05601         127 DIKPENVLIDRTGHIKLADFGSAARLTANKM-------------------------------------------------  157 (330)
T ss_pred             cCchHheEECCCCCEEeccCCCCeECCCCCc-------------------------------------------------
Confidence            9999999999999999999999843321000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc------CCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS------GQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~------~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                  .......||+.|+|||++.      +..++.++|||||||++|||++|..||
T Consensus       158 ----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf  209 (330)
T cd05601         158 ----------------------------VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPF  209 (330)
T ss_pred             ----------------------------eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCC
Confidence                                        0012236899999999987      455789999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCC
Q 010140          398 KGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSI  475 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~  475 (517)
                      ...+....+.++....  ..+|...       ....++.+||.+||. ||.+||++.    ++++||||+.++|..+...
T Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~li~~ll~-~p~~R~t~~----~l~~h~~~~~~~~~~~~~~  277 (330)
T cd05601         210 HEGTSAKTYNNIMNFQRFLKFPEDP-------KVSSDFLDLIQSLLC-GQKERLGYE----GLCCHPFFSKIDWNNIRNS  277 (330)
T ss_pred             CCCCHHHHHHHHHcCCCccCCCCCC-------CCCHHHHHHHHHHcc-ChhhCCCHH----HHhCCCCcCCCCHHHHhhC
Confidence            9888877777776543  2222211       112358999999998 999999998    9999999999999999887


Q ss_pred             CCCCCCC
Q 010140          476 KPPEVPN  482 (517)
Q Consensus       476 ~p~~~~~  482 (517)
                      .||..|.
T Consensus       278 ~~~~~~~  284 (330)
T cd05601         278 LPPFVPT  284 (330)
T ss_pred             CCCccCc
Confidence            7776665

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.2e-51  Score=370.68  Aligned_cols=271  Identities=29%  Similarity=0.444  Sum_probs=226.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH-----HHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-----AIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.|.-.+.||+|..++|.+|.++.     +++.+|+|++.....     ......+.-..|+.||+++ .||+|+++.++
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~-----t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~   91 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKE-----TGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDV   91 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcc-----cccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeee
Confidence            467888899999999999999887     677889998853211     1234455566799999998 79999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |+.+..+++|+|.|+.|.|++++...  -.                            +++...|.+|+||+.|++|||.
T Consensus        92 yes~sF~FlVFdl~prGELFDyLts~--Vt----------------------------lSEK~tR~iMrqlfegVeylHa  141 (411)
T KOG0599|consen   92 YESDAFVFLVFDLMPRGELFDYLTSK--VT----------------------------LSEKETRRIMRQLFEGVEYLHA  141 (411)
T ss_pred             ccCcchhhhhhhhcccchHHHHhhhh--ee----------------------------ecHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998763  11                            2334456899999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ++||||||||+|||++++.++||+|||+|..+..                                              
T Consensus       142 ~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~----------------------------------------------  175 (411)
T KOG0599|consen  142 RNIVHRDLKPENILLDDNMNIKISDFGFACQLEP----------------------------------------------  175 (411)
T ss_pred             hhhhhcccChhheeeccccceEEeccceeeccCC----------------------------------------------
Confidence            9999999999999999999999999999955432                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC------CCCCccchHHHHHHHHHHHh
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~------~~~~~~~DiWSlGvil~ell  391 (517)
                                                       +.+....||||+|+|||.+..      .+|+..+|+||+|||||.|+
T Consensus       176 ---------------------------------GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLL  222 (411)
T KOG0599|consen  176 ---------------------------------GEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLL  222 (411)
T ss_pred             ---------------------------------chhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHH
Confidence                                             233456799999999999864      25888999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      .|.+||......-++..|+.+.+.|....+..     .+.+.+|||.+||+.||.+|+|+.    |+|+||||..+-...
T Consensus       223 aGcpPFwHRkQmlMLR~ImeGkyqF~speWad-----is~~~KdLIsrlLqVdp~~Ritak----e~LaHpff~q~~~~~  293 (411)
T KOG0599|consen  223 AGCPPFWHRKQMLMLRMIMEGKYQFRSPEWAD-----ISATVKDLISRLLQVDPTKRITAK----EALAHPFFIQIAQQQ  293 (411)
T ss_pred             cCCCchhHHHHHHHHHHHHhcccccCCcchhh-----ccccHHHHHHHHHeeCchhcccHH----HHhcChHHHHHHHhc
Confidence            99999999888888999999998886544333     334689999999999999999998    999999998776666


Q ss_pred             ccCCCC
Q 010140          472 IRSIKP  477 (517)
Q Consensus       472 ~~~~~p  477 (517)
                      .+.+.|
T Consensus       294 ~r~msP  299 (411)
T KOG0599|consen  294 ARQMSP  299 (411)
T ss_pred             ccccCC
Confidence            666655

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.1e-48  Score=391.35  Aligned_cols=271  Identities=40%  Similarity=0.695  Sum_probs=219.8

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHH-HHHhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||+||+|+++.     +++.||||++.+...........+..|.. +++.++||||+++++++...+..|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKA-----DGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEE
Confidence            469999999999999886     67899999998765544444445555554 567799999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+.+..                            .+.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~g~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~givH~dikp~  125 (323)
T cd05575          76 DYVNGGELFFHLQRE--RSFPEPR----------------------------ARFYAAEIASALGYLHSLNIIYRDLKPE  125 (323)
T ss_pred             cCCCCCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEeCCCCHH
Confidence            999999999888653  2232222                            2367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.+|.+||+|||+++.....                                                        
T Consensus       126 NIll~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  149 (323)
T cd05575         126 NILLDSQGHVVLTDFGLCKEGIEH--------------------------------------------------------  149 (323)
T ss_pred             HeEECCCCcEEEeccCCCcccccC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~  207 (323)
T cd05575         150 ----------------------SKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDN  207 (323)
T ss_pred             ----------------------CCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHH
Confidence                                  0112234699999999999998999999999999999999999999999888888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc--CCCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR--SIKPPEVPN  482 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~--~~~p~~~~~  482 (517)
                      +.......+...         ...+.+||.+||+.||.+||++...+.++++||||+.++|..+.  .+.+|..|.
T Consensus       208 i~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~  274 (323)
T cd05575         208 ILNKPLRLKPNI---------SVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPFNPN  274 (323)
T ss_pred             HHcCCCCCCCCC---------CHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCCCHHHHhhccCCCCcCCC
Confidence            877655444321         12489999999999999999998788899999999999998773  345555443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=8.1e-49  Score=392.07  Aligned_cols=270  Identities=37%  Similarity=0.724  Sum_probs=220.3

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||||++.+...........+..|..++..+ +||||++++++|..++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKG-----TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECC-----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEE
Confidence            469999999999999876     6789999999876554445556667788888876 8999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+++|+|..++...  ..+.+...                            +.++.||+.||.|||++||+||||||+
T Consensus        76 E~~~~~~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~aL~~LH~~~ivHrDikp~  125 (321)
T cd05591          76 EYVNGGDLMFQIQRS--RKFDEPRS----------------------------RFYAAEVTLALMFLHRHGVIYRDLKLD  125 (321)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeeccCCCHH
Confidence            999999999888654  22332222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.+|.+||+|||+++.....                                                        
T Consensus       126 Nill~~~~~~kL~Dfg~~~~~~~~--------------------------------------------------------  149 (321)
T cd05591         126 NILLDAEGHCKLADFGMCKEGILN--------------------------------------------------------  149 (321)
T ss_pred             HeEECCCCCEEEeecccceecccC--------------------------------------------------------
Confidence            999999999999999997421100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~  207 (321)
T cd05591         150 ----------------------GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFES  207 (321)
T ss_pred             ----------------------CccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHH
Confidence                                  0112234699999999999998899999999999999999999999999998888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC---ChHHhhcCCCcCCCCcccccC--CCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK---GSVEIKRHEFFKGINWALIRS--IKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~---~~~ell~hp~f~~~~~~~~~~--~~p~~~~  481 (517)
                      +......+|...         ..++.+||.+||+.||++|++...   .+.++++||||++++|..+..  ..||..|
T Consensus       208 i~~~~~~~p~~~---------~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~~  276 (321)
T cd05591         208 ILHDDVLYPVWL---------SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLLEQRKIKPPFKP  276 (321)
T ss_pred             HHcCCCCCCCCC---------CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCCCHHHHHhCCCCCCCCC
Confidence            888766555321         124899999999999999996543   456999999999999997743  3444433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-49  Score=368.20  Aligned_cols=319  Identities=35%  Similarity=0.624  Sum_probs=255.7

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      ..+.+.+++|.++++||+|+|+.|.+++.+.     +.+.||+|+++++.....+.+.-++.|..+.... +||.+|.|+
T Consensus       243 ~~~~l~l~df~ll~vigrgsyakvl~~~~~~-----t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglh  317 (593)
T KOG0695|consen  243 ISQGLGLQDFDLLRVIGRGSYAKVLLVRLKK-----TDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLH  317 (593)
T ss_pred             cccccccccceeeeeecCcchhhhhheehcc-----cceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehh
Confidence            4456788999999999999999999999987     7899999999998877777777778888888876 799999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      .+|+.+..+++|.||++||+|.-.++++  ..++++.+                            |+|..+|+.||.||
T Consensus       318 scfqtesrlffvieyv~ggdlmfhmqrq--rklpeeha----------------------------rfys~ei~lal~fl  367 (593)
T KOG0695|consen  318 SCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHA----------------------------RFYSAEICLALNFL  367 (593)
T ss_pred             hhhcccceEEEEEEEecCcceeeehhhh--hcCcHHHh----------------------------hhhhHHHHHHHHHH
Confidence            9999999999999999999998777665  44555544                            47889999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++|||.||||.+|+|++..|++||+|+|+++.--.                                            
T Consensus       368 h~rgiiyrdlkldnvlldaeghikltdygmcke~l~--------------------------------------------  403 (593)
T KOG0695|consen  368 HERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG--------------------------------------------  403 (593)
T ss_pred             hhcCeeeeeccccceEEccCCceeecccchhhcCCC--------------------------------------------
Confidence            999999999999999999999999999999832100                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                        ....++++||||.|.|||+++|..|+..+|+|+|||+|+||+.|+.
T Consensus       404 ----------------------------------~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrs  449 (593)
T KOG0695|consen  404 ----------------------------------PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRS  449 (593)
T ss_pred             ----------------------------------CCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCC
Confidence                                              0123568899999999999999999999999999999999999999


Q ss_pred             CCCC--------CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcC
Q 010140          396 PFKG--------ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFK  465 (517)
Q Consensus       396 Pf~~--------~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~  465 (517)
                      ||+-        .++.-+++-|+..+...|.....         .+..+++..|++||.+|++..  -+..++..|+||+
T Consensus       450 pfdivgm~n~d~ntedylfqvilekqiriprslsv---------kas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr  520 (593)
T KOG0695|consen  450 PFDIVGMDNPDMNTEDYLFQVILEKQIRIPRSLSV---------KASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFR  520 (593)
T ss_pred             CcceecCCCcccchhHHHHHHHhhhcccccceeeh---------hhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhh
Confidence            9972        12334566677777777765433         367899999999999999864  3567999999999


Q ss_pred             CCCcccc--cCCCCCCCCCCccccccc-----cccccCCCCccccCCCCCCCCCCCCCC
Q 010140          466 GINWALI--RSIKPPEVPNNDLYCKIK-----KKVYVPKLSKQERDAPYQIPTHHFDYF  517 (517)
Q Consensus       466 ~~~~~~~--~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (517)
                      .+||+.+  +.+.||+-|+..--....     -..-.+++.++..|+--.|-++.||-|
T Consensus       521 ~idwd~leqk~v~ppf~p~i~~d~~l~~fd~qft~e~~qltpdd~d~i~ridqsefegf  579 (593)
T KOG0695|consen  521 SIDWDLLEQKQVLPPFQPQITDDYGLDNFDTQFTSEPVQLTPDDEDAIKRIDQSEFEGF  579 (593)
T ss_pred             hCCHHHHhhcccCCCCCCccccccCccccccccccCCcccCCCCHHHHHhcchhhcCcc
Confidence            9999977  668899887632111110     012234555555555555555555543

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.8e-48  Score=388.66  Aligned_cols=267  Identities=39%  Similarity=0.758  Sum_probs=215.2

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|++..     +++.||||++++..............|..++..+ +||||+++++++..++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKG-----TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEE
Confidence            469999999999999886     6788999999876544344445555677777654 8999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+++...                            +.|+.||+.||+|||++||+||||||+
T Consensus        76 e~~~gg~L~~~~~~~--~~~~~~~~----------------------------~~~~~qi~~al~~LH~~~ivH~dlkp~  125 (316)
T cd05592          76 EYLNGGDLMFHIQSS--GRFDEARA----------------------------RFYAAEIICGLQFLHKKGIIYRDLKLD  125 (316)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCEEeCCCCHH
Confidence            999999999888654  22333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nill~~~~~~kL~Dfg~a~~~~~~--------------------------------------------------------  149 (316)
T cd05592         126 NVLLDKDGHIKIADFGMCKENMNG--------------------------------------------------------  149 (316)
T ss_pred             HeEECCCCCEEEccCcCCeECCCC--------------------------------------------------------
Confidence            999999999999999998432100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~  207 (316)
T cd05592         150 ----------------------EGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDS  207 (316)
T ss_pred             ----------------------CCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                                  0112345799999999999998899999999999999999999999999888888887


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc--CCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR--SIKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~--~~~p~~~~  481 (517)
                      +......+|...         ..++.+||.+||+.||.+||++.   .++++||||+.++|..+.  ...|+..|
T Consensus       208 i~~~~~~~~~~~---------~~~~~~ll~~~l~~~P~~R~~~~---~~l~~h~~~~~~~~~~~~~~~~~~~~~~  270 (316)
T cd05592         208 ILNDRPHFPRWI---------SKEAKDCLSKLFERDPTKRLGVD---GDIRQHPFFRGIDWERLEKREIPPPFKP  270 (316)
T ss_pred             HHcCCCCCCCCC---------CHHHHHHHHHHccCCHHHcCCCh---HHHHcCcccCCCCHHHHHhCCCCCCcCC
Confidence            776554444321         12489999999999999999874   378899999999998763  34444444

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.1e-48  Score=388.06  Aligned_cols=268  Identities=36%  Similarity=0.729  Sum_probs=215.7

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||+|++++..............|..++..+ +||||+++++++.+.+++|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKG-----KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEE
Confidence            469999999999999886     6789999999876543334445566688888764 8999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+.+..+                            +.++.||+.||+|||++||+||||||+
T Consensus        76 E~~~~g~L~~~i~~~--~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~ivHrDlkp~  125 (316)
T cd05620          76 EFLNGGDLMFHIQDK--GRFDLYRA----------------------------TFYAAEIVCGLQFLHSKGIIYRDLKLD  125 (316)
T ss_pred             CCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEecCCCHH
Confidence            999999999888653  22333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++....                                                         
T Consensus       126 Nil~~~~~~~kl~Dfg~~~~~~~---------------------------------------------------------  148 (316)
T cd05620         126 NVMLDRDGHIKIADFGMCKENVF---------------------------------------------------------  148 (316)
T ss_pred             HeEECCCCCEEeCccCCCeeccc---------------------------------------------------------
Confidence            99999999999999998732110                                                         


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                           ........+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..+....
T Consensus       149 ---------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~  207 (316)
T cd05620         149 ---------------------GDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFES  207 (316)
T ss_pred             ---------------------CCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                                 00112345799999999999999999999999999999999999999998888877777


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc--CCCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR--SIKPPEVPN  482 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~--~~~p~~~~~  482 (517)
                      +......+|...         ..++++||.+||+.||++|+++.   .++++||||++++|..+.  .+.+|..|.
T Consensus       208 ~~~~~~~~~~~~---------~~~~~~li~~~l~~dP~~R~~~~---~~~~~h~~f~~~~~~~~~~~~~~~~~~~~  271 (316)
T cd05620         208 IRVDTPHYPRWI---------TKESKDILEKLFERDPTRRLGVV---GNIRGHPFFKTINWTALEKRELDPPFKPK  271 (316)
T ss_pred             HHhCCCCCCCCC---------CHHHHHHHHHHccCCHHHcCCCh---HHHHcCCCcCCCCHHHHHhCCCCCCcCCC
Confidence            766554444321         12489999999999999999984   278999999999998753  344555443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.8e-48  Score=389.39  Aligned_cols=270  Identities=37%  Similarity=0.696  Sum_probs=214.3

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||||++++...........+..|..++..+ +||||++++++|.+.+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKK-----TRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEE
Confidence            469999999999999887     6789999999877655445566677899999988 7999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      |||+||+|..++...  ..+++..+                            +.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~g~L~~~~~~~--~~l~~~~~----------------------------~~~~~qi~~~l~~lH~~~ivH~dlkp~  125 (329)
T cd05588          76 EFVSGGDLMFHMQRQ--RKLPEEHA----------------------------RFYSAEISLALNFLHERGIIYRDLKLD  125 (329)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEecCCCHH
Confidence            999999998887654  23333332                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++....                                                         
T Consensus       126 Nili~~~~~~kL~Dfg~~~~~~~---------------------------------------------------------  148 (329)
T cd05588         126 NVLLDAEGHIKLTDYGMCKEGIR---------------------------------------------------------  148 (329)
T ss_pred             HeEECCCCCEEECcCcccccccc---------------------------------------------------------
Confidence            99999999999999999732100                                                         


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-------
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-------  401 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-------  401 (517)
                                           ........+||+.|+|||++.+..++.++|||||||++|+|++|+.||....       
T Consensus       149 ---------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~  207 (329)
T cd05588         149 ---------------------PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQ  207 (329)
T ss_pred             ---------------------CCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccc
Confidence                                 0011234579999999999999999999999999999999999999996321       


Q ss_pred             --hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCCCCcccccC--C
Q 010140          402 --NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKGINWALIRS--I  475 (517)
Q Consensus       402 --~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~~~~~~~~~--~  475 (517)
                        .......+.......|...         ..++.+||.+||+.||.+|+++.  ..+.++++||||+.++|..+..  .
T Consensus       208 ~~~~~~~~~~~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~~~~~~~~~~~  278 (329)
T cd05588         208 NTEDYLFQVILEKQIRIPRSL---------SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDWDLLEQKQV  278 (329)
T ss_pred             cchHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHhCCC
Confidence              1223444555554444321         12489999999999999999863  2366999999999999987743  3


Q ss_pred             CCCCCC
Q 010140          476 KPPEVP  481 (517)
Q Consensus       476 ~p~~~~  481 (517)
                      .|+..|
T Consensus       279 ~~~~~~  284 (329)
T cd05588         279 LPPYKP  284 (329)
T ss_pred             CCCccc
Confidence            444433

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.4e-48  Score=393.87  Aligned_cols=284  Identities=36%  Similarity=0.650  Sum_probs=224.7

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ...++..++|++.+.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+++.++||||+++++
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~-----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~  110 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKS-----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFY  110 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECC-----CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3456677999999999999999999999987     67899999998755444445566778999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+++.+|+|||||+||+|.+++...   .++....                            +.++.||+.||+|||
T Consensus       111 ~~~~~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~----------------------------~~~~~qi~~aL~~LH  159 (371)
T cd05622         111 AFQDDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWA----------------------------RFYTAEVVLALDAIH  159 (371)
T ss_pred             EEEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            999999999999999999999988653   2222222                            367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.+|.+||+|||+++......                                           
T Consensus       160 ~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~-------------------------------------------  196 (371)
T cd05622         160 SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG-------------------------------------------  196 (371)
T ss_pred             HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCC-------------------------------------------
Confidence            9999999999999999999999999999984322100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----CCccchHHHHHHHHHHHhh
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----~~~~~DiWSlGvil~ellt  392 (517)
                                                        .......+||+.|+|||++.+..    ++.++|||||||++|||++
T Consensus       197 ----------------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~  242 (371)
T cd05622         197 ----------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV  242 (371)
T ss_pred             ----------------------------------cccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHh
Confidence                                              00112457999999999997643    7889999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC--
Q 010140          393 GTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN--  468 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~--  468 (517)
                      |..||.+.+....+..+....  ..+|...       .....+++||.+||. +|..|++. ..+.|+++||||++.+  
T Consensus       243 G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~-------~~s~~~~~li~~~L~-~~~~r~~r-~~~~ei~~h~~~~~~~~~  313 (371)
T cd05622         243 GDTPFYADSLVGTYSKIMNHKNSLTFPDDN-------DISKEAKNLICAFLT-DREVRLGR-NGVEEIKRHLFFKNDQWA  313 (371)
T ss_pred             CCCCCCCCCHHHHHHHHHcCCCcccCCCcC-------CCCHHHHHHHHHHcC-ChhhhcCC-CCHHHHhcCcccCCCChh
Confidence            999999988888888887644  2333221       112348999999998 66665432 2334999999999855  


Q ss_pred             cccccCCCCCCCCC
Q 010140          469 WALIRSIKPPEVPN  482 (517)
Q Consensus       469 ~~~~~~~~p~~~~~  482 (517)
                      |..++...+|.+|.
T Consensus       314 ~~~~~~~~~~~~~~  327 (371)
T cd05622         314 WETLRDTVAPVVPD  327 (371)
T ss_pred             HHhcCCCCCCCCCC
Confidence            45667777777665

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.3e-48  Score=380.07  Aligned_cols=271  Identities=33%  Similarity=0.587  Sum_probs=211.3

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||+|+||+||+|.++.     +++.||+|.+.+...........+..|+.+++.++||||+++++++..+...|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRA-----TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEcc-----CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCC
Confidence            7999999999999886     67899999998766554455567778999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      +||+|..++...........+.                          .++.++.||+.||+|||++||+||||||+|||
T Consensus        76 ~~g~L~~~~~~~~~~~~~l~~~--------------------------~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil  129 (280)
T cd05608          76 NGGDLRYHIYNVDEENPGFPEP--------------------------RACFYTAQIISGLEHLHQRRIIYRDLKPENVL  129 (280)
T ss_pred             CCCCHHHHHHhccccCCCCCHH--------------------------HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE
Confidence            9999988775432211112111                          22367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.+||+|||++..+...                                                           
T Consensus       130 i~~~~~~~l~dfg~~~~~~~~-----------------------------------------------------------  150 (280)
T cd05608         130 LDNDGNVRISDLGLAVELKDG-----------------------------------------------------------  150 (280)
T ss_pred             ECCCCCEEEeeCccceecCCC-----------------------------------------------------------
Confidence            999999999999998432210                                                           


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH----HHHH
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE----KTLI  407 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~----~~~~  407 (517)
                                         ........||+.|+|||++.+..++.++|||||||++|+|++|+.||......    ....
T Consensus       151 -------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~  211 (280)
T cd05608         151 -------------------QSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ  211 (280)
T ss_pred             -------------------CccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHH
Confidence                               00112346899999999999999999999999999999999999999865432    2223


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccccC--CCCCCC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIRS--IKPPEV  480 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~~--~~p~~~  480 (517)
                      .+......++.         ..+..+.+|+.+||+.||++||+++. .++++++||||++++|..+..  ..+|+.
T Consensus       212 ~~~~~~~~~~~---------~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~  278 (280)
T cd05608         212 RILNDSVTYPD---------KFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEAGMLPPPFV  278 (280)
T ss_pred             hhcccCCCCcc---------cCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCCHhHHhhccCCCCCC
Confidence            33333222221         12235899999999999999997653 566999999999999997633  344443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.2e-48  Score=386.70  Aligned_cols=268  Identities=38%  Similarity=0.778  Sum_probs=216.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh-cCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM-LDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||||++++..............|..++.. ++||||+++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKG-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEE
Confidence            469999999999999886     678899999987654433444556668888876 49999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+.+...                            +.++.||+.||+|||++||+||||||+
T Consensus        76 ey~~~g~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~al~~LH~~~ivHrdikp~  125 (316)
T cd05619          76 EYLNGGDLMFHIQSC--HKFDLPRA----------------------------TFYAAEIICGLQFLHSKGIVYRDLKLD  125 (316)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeEeCCCCHH
Confidence            999999999988653  22333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  149 (316)
T cd05619         126 NILLDTDGHIKIADFGMCKENMLG--------------------------------------------------------  149 (316)
T ss_pred             HEEECCCCCEEEccCCcceECCCC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~  207 (316)
T cd05619         150 ----------------------DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQS  207 (316)
T ss_pred             ----------------------CCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                                  0011234699999999999998899999999999999999999999999888877777


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCCCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPPEVPN  482 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~~p~~~~~  482 (517)
                      +......+|..   .      ..++++||.+||+.||++||++.   .++++||||+.++|..+  +.+.||..|.
T Consensus       208 i~~~~~~~~~~---~------~~~~~~li~~~l~~~P~~R~~~~---~~l~~h~~~~~~~~~~~~~~~~~~~~~~~  271 (316)
T cd05619         208 IRMDNPCYPRW---L------TREAKDILVKLFVREPERRLGVK---GDIRQHPFFREIDWSALEEREIEPPFKPK  271 (316)
T ss_pred             HHhCCCCCCcc---C------CHHHHHHHHHHhccCHhhcCCCh---HHHHcCcccCCCCHHHHHhCCCCCCcCCC
Confidence            76655444321   1      12489999999999999999984   38999999999999976  3455665554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.1e-48  Score=391.82  Aligned_cols=269  Identities=40%  Similarity=0.708  Sum_probs=218.2

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+++.     +++.||+|++.+...........+..|+.++..++||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKA-----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEe
Confidence            469999999999999876     678999999987765544556677789999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCceeccCCCC
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPE  248 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~iiHrDLKp~  248 (517)
                      |++||+|..++...  ..+++..                            ++.++.||+.||+|||+ +||+||||||+
T Consensus        76 ~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~aL~~lH~~~~ivHrDikp~  125 (325)
T cd05594          76 YANGGELFFHLSRE--RVFSEDR----------------------------ARFYGAEIVSALDYLHSEKNVVYRDLKLE  125 (325)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhcCCEEecCCCCC
Confidence            99999998887653  2233222                            23678999999999997 79999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.+|.+||+|||+++.....                                                        
T Consensus       126 NIll~~~~~~kL~Dfg~~~~~~~~--------------------------------------------------------  149 (325)
T cd05594         126 NLMLDKDGHIKITDFGLCKEGIKD--------------------------------------------------------  149 (325)
T ss_pred             eEEECCCCCEEEecCCCCeecCCC--------------------------------------------------------
Confidence            999999999999999997421100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+.......
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~  207 (325)
T cd05594         150 ----------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL  207 (325)
T ss_pred             ----------------------CcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHH
Confidence                                  0011234699999999999998899999999999999999999999998888877777


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      +......+|...         ..++.+||.+||+.||++|++.. ..+.++++||||+++.|....  ...||..
T Consensus       208 i~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~~~~~~~~~~~~  273 (325)
T cd05594         208 ILMEEIRFPRTL---------SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVYEKKLVPPFK  273 (325)
T ss_pred             HhcCCCCCCCCC---------CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcC
Confidence            776666555422         22589999999999999998432 234599999999999999663  3334443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=5.5e-48  Score=385.52  Aligned_cols=270  Identities=40%  Similarity=0.766  Sum_probs=219.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||+||+|+++.     +++.||||++.+...........+..|..++..+ +||||+++++++...+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKG-----TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEE
Confidence            469999999999999886     6788999999877655445566677788999888 7999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+++...                            +.++.||+.||.|||++||+||||||+
T Consensus        76 e~~~~~~L~~~~~~~--~~l~~~~~----------------------------~~~~~qi~~~l~~LH~~~ivH~dlkp~  125 (318)
T cd05570          76 EYVNGGDLMFHIQRS--GRFDEPRA----------------------------RFYAAEIVLGLQFLHERGIIYRDLKLD  125 (318)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeEccCCCHH
Confidence            999999998887654  23333322                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nill~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  149 (318)
T cd05570         126 NVLLDSEGHIKIADFGMCKEGILG--------------------------------------------------------  149 (318)
T ss_pred             HeEECCCCcEEecccCCCeecCcC--------------------------------------------------------
Confidence            999999999999999987321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......
T Consensus       150 ----------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~  207 (318)
T cd05570         150 ----------------------GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQS  207 (318)
T ss_pred             ----------------------CCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHH
Confidence                                  0111234689999999999999999999999999999999999999999888888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSIKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~~p~~~~  481 (517)
                      +......+|...         ...+.+||.+||+.||.+||++. ....++++||||+.++|...  +...||..+
T Consensus       208 i~~~~~~~~~~~---------~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  274 (318)
T cd05570         208 ILEDEVRYPRWL---------SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKEIKPPFKP  274 (318)
T ss_pred             HHcCCCCCCCcC---------CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCC
Confidence            877665554321         12489999999999999999982 22349999999999999865  334455443

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=4.5e-48  Score=386.73  Aligned_cols=270  Identities=40%  Similarity=0.703  Sum_probs=218.4

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHH-HHHhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|++..     +++.||+|++.+...........+..|.. +++.++||||+++++++.+.+..|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKS-----DGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEE
Confidence            469999999999999886     67899999998765443344445555554 678899999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      |||+||+|...+...  ..+....                            ++.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~~L~~lH~~~ivH~Dlkp~  125 (321)
T cd05603          76 DYVNGGELFFHLQRE--RCFLEPR----------------------------ARFYAAEVASAIGYLHSLNIIYRDLKPE  125 (321)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEeccCCHH
Confidence            999999998877653  2222222                            2367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.+|.+||+|||+++.....                                                        
T Consensus       126 NIll~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  149 (321)
T cd05603         126 NILLDSQGHVVLTDFGLCKEGVEP--------------------------------------------------------  149 (321)
T ss_pred             HeEECCCCCEEEccCCCCccCCCC--------------------------------------------------------
Confidence            999999999999999987321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+....+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~  207 (321)
T cd05603         150 ----------------------EETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDN  207 (321)
T ss_pred             ----------------------CCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHH
Confidence                                  0011234799999999999988899999999999999999999999999888888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc--CCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR--SIKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~--~~~p~~~~  481 (517)
                      +......+|...         ...+.++|.+||+.||.+|+++...+.++++|+||..++|..+.  ...||..+
T Consensus       208 i~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T cd05603         208 ILHKPLQLPGGK---------TVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLYHKRITPPYNP  273 (321)
T ss_pred             HhcCCCCCCCCC---------CHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCCCHHHHhcCCCCCCcCC
Confidence            877765554321         12489999999999999999998788899999999999998763  34455443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.7e-48  Score=378.39  Aligned_cols=270  Identities=34%  Similarity=0.557  Sum_probs=211.5

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||+|+||.||+++.+.     +++.||+|.+................|+.++++++||||++++++++.+.+.|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKN-----TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEcc-----CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecC
Confidence            7999999999999887     67899999997665443333444556999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      +||+|..++.......+.....                            ..++.||+.||+|||++||+||||||+|||
T Consensus        76 ~g~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~al~~lH~~~ivH~dikp~Nil  127 (277)
T cd05607          76 NGGDLKYHIYNVGERGLEMERV----------------------------IHYSAQITCGILHLHSMDIVYRDMKPENVL  127 (277)
T ss_pred             CCCCHHHHHHhccccCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCEEEccCChHhEE
Confidence            9999988876543222322222                            257899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.++|+|||++......                                                           
T Consensus       128 i~~~~~~~l~Dfg~~~~~~~~-----------------------------------------------------------  148 (277)
T cd05607         128 LDDQGNCRLSDLGLAVELKDG-----------------------------------------------------------  148 (277)
T ss_pred             EcCCCCEEEeeceeeeecCCC-----------------------------------------------------------
Confidence            999999999999997432210                                                           


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh----HHHHH
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN----EKTLI  407 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~----~~~~~  407 (517)
                                          .......||+.|+|||++.+..++.++|||||||++|||++|..||.+...    .+...
T Consensus       149 --------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~  208 (277)
T cd05607         149 --------------------KTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKR  208 (277)
T ss_pred             --------------------ceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHH
Confidence                                001123589999999999988899999999999999999999999976533    23333


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC--CCCCCCC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS--IKPPEVP  481 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~--~~p~~~~  481 (517)
                      .+.......+..  .      ...++++||.+||+.||++||++.+.++++++||||++++|..++.  ..||++|
T Consensus       209 ~~~~~~~~~~~~--~------~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~  276 (277)
T cd05607         209 RTLEDEVKFEHQ--N------FTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPRLEAGLIPPPFVP  276 (277)
T ss_pred             Hhhccccccccc--c------CCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCCCHHHHhcCcCCCCCCC
Confidence            333333222111  1      1225899999999999999999977777999999999999998864  4555443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-48  Score=379.57  Aligned_cols=276  Identities=34%  Similarity=0.571  Sum_probs=216.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++.+.||+|+||.||++.+..     +++.||+|++.............+.+|+.+++.++||||+++++++..++.+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcC-----CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeE
Confidence            48999999999999999999876     6789999999876554444445667799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++|+|..++.......++....                            +.++.||+.||.|||++||+|||
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~ivH~d  127 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNMGNPGFDEERA----------------------------VFYAAEITCGLEDLHRERIVYRD  127 (285)
T ss_pred             EEEEeccCCCcHHHHHHhcCcCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcEecC
Confidence            99999999999998876543333333332                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||+++....                                                     
T Consensus       128 lkp~Nil~~~~~~~~l~Dfg~~~~~~~-----------------------------------------------------  154 (285)
T cd05605         128 LKPENILLDDYGHIRISDLGLAVEIPE-----------------------------------------------------  154 (285)
T ss_pred             CCHHHEEECCCCCEEEeeCCCceecCC-----------------------------------------------------
Confidence            999999999999999999999743210                                                     


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                .......+|++.|+|||++.+..++.++||||+||++|||++|..||.+.....
T Consensus       155 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~  208 (285)
T cd05605         155 --------------------------GETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV  208 (285)
T ss_pred             --------------------------CCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh
Confidence                                      001123368999999999998889999999999999999999999998866543


Q ss_pred             HHHHH----hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccccC--CCC
Q 010140          405 TLINI----LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIRS--IKP  477 (517)
Q Consensus       405 ~~~~i----~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~~--~~p  477 (517)
                      ....+    ......++.         .....+.+||.+||+.||++||+.. ..+.++++||||...+|..+..  +.|
T Consensus       209 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  279 (285)
T cd05605         209 KREEVERRVKEDQEEYSE---------KFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEP  279 (285)
T ss_pred             HHHHHHHHhhhcccccCc---------ccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCCCHHHHhhCCCCC
Confidence            32222    222222221         1122489999999999999999532 1344999999999999997744  345


Q ss_pred             CCCC
Q 010140          478 PEVP  481 (517)
Q Consensus       478 ~~~~  481 (517)
                      |+.|
T Consensus       280 ~~~~  283 (285)
T cd05605         280 PFCP  283 (285)
T ss_pred             CCCC
Confidence            5544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=5.9e-48  Score=386.55  Aligned_cols=270  Identities=41%  Similarity=0.696  Sum_probs=216.7

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHH-HHHHhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK-VILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~-~il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||+||+|+++.     +++.||+|++.+...........+..|. .+++.++||||+++++++...+.+|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKA-----EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEE
Confidence            469999999999999886     6788999999876543333333444444 4567889999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+...                            .++.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~~~L~~~~~~~--~~~~~~----------------------------~~~~~~~qi~~~L~~lH~~giiHrDlkp~  125 (325)
T cd05602          76 DYINGGELFYHLQRE--RCFLEP----------------------------RARFYAAEIASALGYLHSLNIVYRDLKPE  125 (325)
T ss_pred             eCCCCCcHHHHHHhc--CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeEecCCCHH
Confidence            999999999888653  222222                            22367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nili~~~~~~kl~DfG~a~~~~~~--------------------------------------------------------  149 (325)
T cd05602         126 NILLDSQGHIVLTDFGLCKENIEH--------------------------------------------------------  149 (325)
T ss_pred             HeEECCCCCEEEccCCCCcccccC--------------------------------------------------------
Confidence            999999999999999998421100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~  207 (325)
T cd05602         150 ----------------------NGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDN  207 (325)
T ss_pred             ----------------------CCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHH
Confidence                                  0112345799999999999999999999999999999999999999999888888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc--CCCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR--SIKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~--~~~p~~~~  481 (517)
                      +.......+..         ....+.+||.+||+.||.+|+++.+.+.++++|+||..++|..+.  ...||..+
T Consensus       208 i~~~~~~~~~~---------~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  273 (325)
T cd05602         208 ILNKPLQLKPN---------ITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDDLINKKITPPFNP  273 (325)
T ss_pred             HHhCCcCCCCC---------CCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCCCHHHHHhCCCCcCcCC
Confidence            77665443321         112489999999999999999998888899999999999999774  33444333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3.9e-48  Score=387.85  Aligned_cols=270  Identities=38%  Similarity=0.673  Sum_probs=218.2

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHH-HHHhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||+||+|+++.     +++.||+|++.+...........+..|.. +++.++||||+++++++..++.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKL-----DGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEE
Confidence            469999999999999876     67899999998765443344445555654 567789999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+++..                            ++.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~al~~lH~~givH~Dlkp~  125 (325)
T cd05604          76 DFVNGGELFFHLQRE--RSFPEPR----------------------------ARFYAAEIASALGYLHSINIVYRDLKPE  125 (325)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeeecCCCHH
Confidence            999999998887653  2233222                            2367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.+|.+||+|||+++.....                                                        
T Consensus       126 NIll~~~~~~kL~DfG~~~~~~~~--------------------------------------------------------  149 (325)
T cd05604         126 NILLDSQGHVVLTDFGLCKEGIAQ--------------------------------------------------------  149 (325)
T ss_pred             HeEECCCCCEEEeecCCcccCCCC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.+..
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~  207 (325)
T cd05604         150 ----------------------SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDN  207 (325)
T ss_pred             ----------------------CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHH
Confidence                                  0012245799999999999999999999999999999999999999999888888888


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC--CCCCCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS--IKPPEVP  481 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~--~~p~~~~  481 (517)
                      +.......+..   .      ...+.++|.+||+.||.+||++...+.++++||||++++|..+..  +.+|..|
T Consensus       208 ~~~~~~~~~~~---~------~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~  273 (325)
T cd05604         208 ILHKPLVLRPG---A------SLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQKKIPPPFNP  273 (325)
T ss_pred             HHcCCccCCCC---C------CHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCC
Confidence            87765544321   1      124889999999999999999988888999999999999987643  3444444

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=8e-48  Score=386.69  Aligned_cols=278  Identities=33%  Similarity=0.600  Sum_probs=221.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+++.+.     +++.||+|++.+...........+..|+.++..++|+||+++++++.+.+.
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKN-----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECC-----CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCE
Confidence            479999999999999999999886     678899999987654444555567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||+++|+|.+++.... ..++...                            ++.|+.||+.||+|||++||+||
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~-~~l~~~~----------------------------~~~~~~qi~~al~~lH~~~iiHr  126 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDM----------------------------ARFYLAEMVIAIDSVHQLHYVHR  126 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEec
Confidence            999999999999999987532 1222222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||++.......                                                  
T Consensus       127 Dlkp~Nili~~~~~~kL~DfG~a~~~~~~~--------------------------------------------------  156 (332)
T cd05623         127 DIKPDNILMDMNGHIRLADFGSCLKLMEDG--------------------------------------------------  156 (332)
T ss_pred             CCCHHHEEECCCCCEEEeecchheecccCC--------------------------------------------------
Confidence            999999999999999999999974321100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                 .......+||+.|+|||++.+     ..++.++|||||||++|||++|+.||.
T Consensus       157 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~  209 (332)
T cd05623         157 ---------------------------TVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFY  209 (332)
T ss_pred             ---------------------------cceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCC
Confidence                                       001123469999999999863     357899999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCC--CCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          399 GENNEKTLINILKKPLT--FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~--~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      +.+..+.+.++......  +|.....      ...++++||.+||..++..  |+++.    |+++||||.+++|..+..
T Consensus       210 ~~~~~~~~~~i~~~~~~~~~p~~~~~------~s~~~~~li~~ll~~~~~r~~r~~~~----~~~~h~~f~~~~~~~~~~  279 (332)
T cd05623         210 AESLVETYGKIMNHKERFQFPAQVTD------VSEDAKDLIRRLICSREHRLGQNGIE----DFKQHPFFTGIDWDNIRN  279 (332)
T ss_pred             CCCHHHHHHHHhCCCccccCCCcccc------CCHHHHHHHHHHccChhhhcCCCCHH----HHhCCCCcCCCCHHHHhh
Confidence            98888888888765432  2222111      2235899999999765443  45555    999999999999999987


Q ss_pred             CCCCCCCC
Q 010140          475 IKPPEVPN  482 (517)
Q Consensus       475 ~~p~~~~~  482 (517)
                      ..+|.+|.
T Consensus       280 ~~~~~~~~  287 (332)
T cd05623         280 CEAPYIPE  287 (332)
T ss_pred             CCCCccCC
Confidence            77776655

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.8e-48  Score=386.14  Aligned_cols=278  Identities=35%  Similarity=0.615  Sum_probs=220.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||+|++.+...........+..|+.++..++|+||++++++|.++++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKN-----TGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECC-----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCe
Confidence            479999999999999999999887     678999999987655445556667889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++||+|.+++.... ..+++..                            ++.++.||+.||+|||++||+||
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~ivH~  126 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDM----------------------------ARFYLAEMVLAIDSVHQLGYVHR  126 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeEEC
Confidence            999999999999999886532 2233222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||++..+....                                                  
T Consensus       127 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------------  156 (331)
T cd05597         127 DIKPDNVLLDKNGHIRLADFGSCLRLLADG--------------------------------------------------  156 (331)
T ss_pred             CCCHHHEEECCCCCEEEEECCceeecCCCC--------------------------------------------------
Confidence            999999999999999999999974322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                 .......+||+.|+|||++.+     ..++.++|||||||++|+|++|+.||.
T Consensus       157 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~  209 (331)
T cd05597         157 ---------------------------TVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             ---------------------------CccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCC
Confidence                                       000112369999999999973     347889999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCC--CCCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          399 GENNEKTLINILKKPL--TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~--~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      +.+..+.+..+.....  .++.....      .+..+++||.+||..+++.  |+++.    ++++||||++++|..+..
T Consensus       210 ~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~li~~ll~~~~~r~~r~~~~----~~l~hp~~~~~~~~~~~~  279 (331)
T cd05597         210 AESLVETYGKIMNHKEHFQFPPDVTD------VSEEAKDLIRRLICSPETRLGRNGLQ----DFKDHPFFEGIDWDNIRN  279 (331)
T ss_pred             CCCHHHHHHHHHcCCCcccCCCccCC------CCHHHHHHHHHHccCcccccCCCCHH----HHhcCCCCCCCCHHHHhh
Confidence            8887777777765432  22222111      2235899999999753332  55665    999999999999998887


Q ss_pred             CCCCCCCC
Q 010140          475 IKPPEVPN  482 (517)
Q Consensus       475 ~~p~~~~~  482 (517)
                      ..+|..|.
T Consensus       280 ~~~~~~~~  287 (331)
T cd05597         280 STAPYVPE  287 (331)
T ss_pred             CCCCccCc
Confidence            77776554

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=4.6e-48  Score=387.78  Aligned_cols=271  Identities=38%  Similarity=0.702  Sum_probs=212.8

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     +++.||+|++.+...........+..|+.++..+ +||||+++++++...+..|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKK-----TERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEE
Confidence            469999999999999887     6789999999876544444556677788888776 8999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+++|+|..++...  ..++....                            +.++.||+.||+|||++||+||||||+
T Consensus        76 E~~~~~~L~~~~~~~--~~l~~~~~----------------------------~~i~~qi~~~l~~lH~~~ivH~Dikp~  125 (329)
T cd05618          76 EYVNGGDLMFHMQRQ--RKLPEEHA----------------------------RFYSAEISLALNYLHERGIIYRDLKLD  125 (329)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeeeCCCCHH
Confidence            999999998887654  22333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nili~~~~~~kL~DfG~~~~~~~~--------------------------------------------------------  149 (329)
T cd05618         126 NVLLDSEGHIKLTDYGMCKEGLRP--------------------------------------------------------  149 (329)
T ss_pred             HEEECCCCCEEEeeCCccccccCC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC--------
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE--------  400 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~--------  400 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|||++|..||...        
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~  207 (329)
T cd05618         150 ----------------------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ  207 (329)
T ss_pred             ----------------------CCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCccc
Confidence                                  00122357999999999999999999999999999999999999999531        


Q ss_pred             -ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCCCCccccc--CC
Q 010140          401 -NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKGINWALIR--SI  475 (517)
Q Consensus       401 -~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~~~~~~~~--~~  475 (517)
                       ........+......+|...         ...+.+||.+||+.||++|+++.  ..+.++++||||++++|....  .+
T Consensus       208 ~~~~~~~~~i~~~~~~~p~~~---------~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~  278 (329)
T cd05618         208 NTEDYLFQVILEKQIRIPRSL---------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQV  278 (329)
T ss_pred             ccHHHHHHHHhcCCCCCCCCC---------CHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHcCCC
Confidence             11223444555555444321         12488999999999999999963  235699999999999998663  34


Q ss_pred             CCCCCCC
Q 010140          476 KPPEVPN  482 (517)
Q Consensus       476 ~p~~~~~  482 (517)
                      .||..|.
T Consensus       279 ~~~~~~~  285 (329)
T cd05618         279 VPPFKPN  285 (329)
T ss_pred             CcCccCC
Confidence            5554443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=9.1e-48  Score=386.03  Aligned_cols=281  Identities=35%  Similarity=0.646  Sum_probs=223.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||+|++.+...........+..|+.++..++|+||+++++++.+.+.
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKH-----TERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            579999999999999999999886     678899999987554444455667779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++||+|.+++.... ..+++..+                            +.++.||+.||+|||++||+||
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~----------------------------~~~~~qi~~~L~~lH~~~iiHr  126 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMA----------------------------RFYIAEMVLAIHSIHQLHYVHR  126 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHhc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeeec
Confidence            999999999999999987632 22332222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++.+....                                                  
T Consensus       127 Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~--------------------------------------------------  156 (331)
T cd05624         127 DIKPDNVLLDMNGHIRLADFGSCLKMNQDG--------------------------------------------------  156 (331)
T ss_pred             cCchHHEEEcCCCCEEEEeccceeeccCCC--------------------------------------------------
Confidence            999999999999999999999984322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                 .......+||+.|+|||++.+     ..++.++|||||||++|+|++|+.||.
T Consensus       157 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~  209 (331)
T cd05624         157 ---------------------------TVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             ---------------------------ceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCcc
Confidence                                       001123469999999999976     457889999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCC--CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLT--FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIK  476 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~--~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~  476 (517)
                      +.+..+.+..+......  +|.....      .+.++++||.+||..++ +|+.. ..++++++||||++++|..++...
T Consensus       210 ~~~~~~~~~~i~~~~~~~~~p~~~~~------~~~~~~~li~~ll~~~~-~~~~~-~~~~~~~~h~~f~~~~~~~~~~~~  281 (331)
T cd05624         210 AESLVETYGKIMNHEERFQFPSHITD------VSEEAKDLIQRLICSRE-RRLGQ-NGIEDFKKHAFFEGIDWENIRNLE  281 (331)
T ss_pred             CCCHHHHHHHHHcCCCcccCCCcccc------CCHHHHHHHHHHccCch-hhcCC-CCHHHHhcCCCcCCCCHHHHhhCC
Confidence            88888877777664322  2222111      12358999999999655 55432 344599999999999999998888


Q ss_pred             CCCCCCC
Q 010140          477 PPEVPNN  483 (517)
Q Consensus       477 p~~~~~~  483 (517)
                      +|..|..
T Consensus       282 ~~~~p~~  288 (331)
T cd05624         282 APYIPDV  288 (331)
T ss_pred             CCccCCC
Confidence            8877763

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=6.9e-49  Score=397.00  Aligned_cols=261  Identities=28%  Similarity=0.444  Sum_probs=214.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-C-----CCccceeeee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-H-----PFLPTLYAEF  158 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H-----pnIv~l~~~~  158 (517)
                      +|.+++.||+|+||.|.+|.+..     +++.||||+++.+.    ....+...|+.||..|+ |     -|||+++++|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~-----T~e~VAIKIiKN~k----~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F  257 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHK-----TGEIVAIKIIKNKK----RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYF  257 (586)
T ss_pred             EEEEEEEecccccceeEEEEecC-----CCcEEEEEeeccCh----HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecc
Confidence            68999999999999999999998     78999999998764    44566677999999996 4     3799999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ...+++|||+|++ +.+|+++++.+...++++..+                            |.++.||+.||.+||+.
T Consensus       258 ~fr~HlciVfELL-~~NLYellK~n~f~Glsl~~i----------------------------r~~~~Qil~~L~~L~~l  308 (586)
T KOG0667|consen  258 YFRNHLCIVFELL-STNLYELLKNNKFRGLSLPLV----------------------------RKFAQQILTALLFLHEL  308 (586)
T ss_pred             ccccceeeeehhh-hhhHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhC
Confidence            9999999999999 779999999987776666544                            47889999999999999


Q ss_pred             CceeccCCCCceEEccCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ||||+|||||||||...+  .|||+|||.|....                                              
T Consensus       309 ~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~----------------------------------------------  342 (586)
T KOG0667|consen  309 GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES----------------------------------------------  342 (586)
T ss_pred             CeeeccCChhheeeccCCcCceeEEecccccccC----------------------------------------------
Confidence            999999999999997544  79999999873211                                              


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         ....+++.++.|+|||++.|.+|+.+.||||||||++||++|.+.
T Consensus       343 -----------------------------------q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PL  387 (586)
T KOG0667|consen  343 -----------------------------------QRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPL  387 (586)
T ss_pred             -----------------------------------CcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccc
Confidence                                               112366889999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCC--------------C---------------------------------CCC-CchhH-
Q 010140          397 FKGENNEKTLINILKKPLTFPR--------------I---------------------------------GVS-SSKEF-  427 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~--------------~---------------------------------~~~-~~~~~-  427 (517)
                      |.|.++.+.+..|++-....|.              .                                 ..+ ..+.+ 
T Consensus       388 fpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~  467 (586)
T KOG0667|consen  388 FPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLE  467 (586)
T ss_pred             cCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccc
Confidence            9999999988888541111000              0                                 000 00000 


Q ss_pred             -----HhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          428 -----EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       428 -----~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                           ..-..+.|||.+||.+||.+|+|+.    |+|+||||.+..
T Consensus       468 ~~~~~~~~~~F~dflk~~L~~dP~~R~tp~----qal~Hpfl~~~~  509 (586)
T KOG0667|consen  468 SGLPKADDKLFIDFLKRCLEWDPAERITPA----QALNHPFLTGTS  509 (586)
T ss_pred             hhcccccHHHHHHHHHHHhccCchhcCCHH----HHhcCccccccc
Confidence                 1122478999999999999999998    999999999643

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=6.7e-48  Score=385.75  Aligned_cols=265  Identities=38%  Similarity=0.691  Sum_probs=214.4

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      ++.||+|+||.||+|+.....  ..++.||+|++.+..... ......+..|+.+|+.++||||++++++|..++.+|+|
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~--~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv   78 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGA--DTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLI   78 (323)
T ss_pred             CceeeecCCeEEEEEEEcccC--CCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEE
Confidence            367999999999999875321  257889999998764422 23345567799999999999999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||++||+|.+++....  .+...                            ..+.++.||+.||+|||++||+||||||
T Consensus        79 ~e~~~~~~L~~~~~~~~--~~~~~----------------------------~~~~~~~qi~~~l~~lH~~~ivH~dlkp  128 (323)
T cd05584          79 LEYLSGGELFMHLEREG--IFMED----------------------------TACFYLSEISLALEHLHQQGIIYRDLKP  128 (323)
T ss_pred             EeCCCCchHHHHHHHcC--CCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeecCCCCH
Confidence            99999999999886542  22221                            1235789999999999999999999999


Q ss_pred             CceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccc
Q 010140          248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIR  327 (517)
Q Consensus       248 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      +|||++.+|.+||+|||+++.....                                                       
T Consensus       129 ~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------------  153 (323)
T cd05584         129 ENILLDAQGHVKLTDFGLCKESIHE-------------------------------------------------------  153 (323)
T ss_pred             HHeEECCCCCEEEeeCcCCeecccC-------------------------------------------------------
Confidence            9999999999999999997421100                                                       


Q ss_pred             cccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHH
Q 010140          328 EQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI  407 (517)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~  407 (517)
                                             .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.
T Consensus       154 -----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~  210 (323)
T cd05584         154 -----------------------GTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTID  210 (323)
T ss_pred             -----------------------CCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHH
Confidence                                   011223469999999999999889999999999999999999999999988888888


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+.......|...         ..++.+||.+||+.||++||+.. ..+.++++||||+..+|..+
T Consensus       211 ~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~~~~~~  267 (323)
T cd05584         211 KILKGKLNLPPYL---------TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDL  267 (323)
T ss_pred             HHHcCCCCCCCCC---------CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCCCHHHH
Confidence            8887766554322         12489999999999999999432 23459999999999999866

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.7e-47  Score=383.43  Aligned_cols=271  Identities=38%  Similarity=0.700  Sum_probs=215.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+++.     .++.||+|++.+...........+..|+.++.++ +||||+++++++...+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKK-----NDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEE
Confidence            479999999999999887     6789999999887655555667778899999888 6999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++||+|..++...  ..+++..                            ++.|+.||+.||+|||++||+||||||+
T Consensus        76 e~~~~~~L~~~~~~~--~~l~~~~----------------------------~~~~~~qi~~al~~lH~~~ivHrDlkp~  125 (327)
T cd05617          76 EYVNGGDLMFHMQRQ--RKLPEEH----------------------------ARFYAAEICIALNFLHERGIIYRDLKLD  125 (327)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeeccCCCHH
Confidence            999999998887654  2233322                            2467899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nili~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  149 (327)
T cd05617         126 NVLLDADGHIKLTDYGMCKEGLGP--------------------------------------------------------  149 (327)
T ss_pred             HEEEeCCCCEEEeccccceeccCC--------------------------------------------------------
Confidence            999999999999999987421100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-------
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-------  401 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-------  401 (517)
                                            .......+||+.|+|||++.+..++.++|||||||++|+|++|..||....       
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~  207 (327)
T cd05617         150 ----------------------GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNT  207 (327)
T ss_pred             ----------------------CCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCccccc
Confidence                                  011224579999999999999999999999999999999999999996421       


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCCCCccccc--CCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKGINWALIR--SIKP  477 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~~~~~~~~--~~~p  477 (517)
                      .......+......+|...         ...+.++|.+||+.||.+|+++.  ..+.++++||||++++|..+.  ...|
T Consensus       208 ~~~~~~~~~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~  278 (327)
T cd05617         208 EDYLFQVILEKPIRIPRFL---------SVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWDLLEKKQVTP  278 (327)
T ss_pred             HHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCCHHHHHhCCCCC
Confidence            2233444445444444321         12489999999999999999964  346799999999999999774  3445


Q ss_pred             CCCCC
Q 010140          478 PEVPN  482 (517)
Q Consensus       478 ~~~~~  482 (517)
                      |+.|.
T Consensus       279 ~~~~~  283 (327)
T cd05617         279 PFKPQ  283 (327)
T ss_pred             CccCC
Confidence            54443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3e-47  Score=379.92  Aligned_cols=311  Identities=56%  Similarity=0.965  Sum_probs=239.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|.+..     +++.||+|.+.............+..|+.+++.++||||+++++.+..+..
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKG-----TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcC-----CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCE
Confidence            479999999999999999999886     678999999987655444566778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+.|++|.+++.......++....                            +.++.||+.||+|||++|++||
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~----------------------------~~~~~qi~~~l~~lH~~~i~H~  127 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQPGKCLSEEVA----------------------------RFYAAEVLLALEYLHLLGIVYR  127 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhCCCCccCHHHH----------------------------HHHHHHHHHHHHHHHHCCeecc
Confidence            999999999999999987654344433322                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++................                     .     ......        
T Consensus       128 dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~---------------------~-----~~~~~~--------  173 (316)
T cd05574         128 DLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRK---------------------G-----SRRSSV--------  173 (316)
T ss_pred             CCChHHeEEcCCCCEEEeecchhhccccccccccccccc---------------------c-----cccccc--------
Confidence            999999999999999999999985443211100000000                     0     000000        


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                     ..................++||..|+|||++.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       174 ---------------~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~  238 (316)
T cd05574         174 ---------------NSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD  238 (316)
T ss_pred             ---------------cccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence                           00000000111122334568999999999999888999999999999999999999999988888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNN  483 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~~~  483 (517)
                      ..+..+......++....       ....+.+||.+||+.||++||+....++|+++||||++++|..+....||.+|..
T Consensus       239 ~~~~~~~~~~~~~~~~~~-------~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  311 (316)
T cd05574         239 ETFSNILKKEVTFPGSPP-------VSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRP  311 (316)
T ss_pred             HHHHHHhcCCccCCCccc-------cCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhhcccCCCCCCCCc
Confidence            877777765555443221       2235899999999999999999666666999999999999999999998887654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6e-48  Score=387.37  Aligned_cols=269  Identities=39%  Similarity=0.687  Sum_probs=217.4

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeeecCceeEEEE
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      ||+|+||+||+|+++.     +++.||||++.+..............|..++..+   +||||+++++++.....+|+||
T Consensus         1 lG~G~~g~Vy~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~   75 (330)
T cd05586           1 IGKGTFGQVYQVRKKD-----TRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVT   75 (330)
T ss_pred             CCCCCceEEEEEEECC-----CCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEE
Confidence            7999999999999886     6789999999876554444455555677777665   7999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+++|+|..++...  ..+++..+                            +.++.||+.||+|||++||+||||||+
T Consensus        76 e~~~~g~L~~~l~~~--~~~~~~~~----------------------------~~~~~qil~al~~LH~~~ivHrDlkp~  125 (330)
T cd05586          76 DYMSGGELFWHLQKE--GRFSEDRA----------------------------KFYIAELVLALEHLHKYDIVYRDLKPE  125 (330)
T ss_pred             cCCCCChHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeEeccCCHH
Confidence            999999999888653  23333222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++.....                                                        
T Consensus       126 Nili~~~~~~kl~Dfg~a~~~~~~--------------------------------------------------------  149 (330)
T cd05586         126 NILLDATGHIALCDFGLSKANLTD--------------------------------------------------------  149 (330)
T ss_pred             HeEECCCCCEEEecCCcCcCCCCC--------------------------------------------------------
Confidence            999999999999999997321100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI  407 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~  407 (517)
                                            .......+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.+..+.+.
T Consensus       150 ----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~  207 (330)
T cd05586         150 ----------------------NKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYR  207 (330)
T ss_pred             ----------------------CCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHH
Confidence                                  0112345799999999999765 48999999999999999999999999988888888


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC--CCCCCCC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS--IKPPEVP  481 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~--~~p~~~~  481 (517)
                      .+..+...++....        ..++.+||.+||+.||.+||++...+.++++||||+..+|..+..  +.||..|
T Consensus       208 ~i~~~~~~~~~~~~--------~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~  275 (330)
T cd05586         208 NIAFGKVRFPKNVL--------SDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQITPPFKP  275 (330)
T ss_pred             HHHcCCCCCCCccC--------CHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCccC
Confidence            88777665554221        124899999999999999998877788999999999999997633  4444444

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.4e-47  Score=385.00  Aligned_cols=280  Identities=41%  Similarity=0.753  Sum_probs=215.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      +|++++.||+|+||.||+|+.....  .+++.||+|++.+..... ......+..|+.++..+ +||||+++++++..++
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~   78 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGH--DTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA   78 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccC--CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC
Confidence            5899999999999999999875321  257899999998654322 23445677899999999 5999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++||+|.+++...  ..++....                            +.++.||+.||+|||++||+|
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~ivH  128 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQR--DNFSEDEV----------------------------RFYSGEIILALEHLHKLGIVY  128 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcEe
Confidence            999999999999999988653  22333222                            367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.+|.+||+|||+++.+....                                                 
T Consensus       129 rDlkp~Nili~~~~~~kl~DfG~~~~~~~~~-------------------------------------------------  159 (332)
T cd05614         129 RDIKLENILLDSEGHVVLTDFGLSKEFLSEE-------------------------------------------------  159 (332)
T ss_pred             cCCCHHHeEECCCCCEEEeeCcCCccccccC-------------------------------------------------
Confidence            9999999999999999999999984321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .......+||+.|+|||++.+.. ++.++|||||||++|||++|..||....
T Consensus       160 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  211 (332)
T cd05614         160 ----------------------------KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEG  211 (332)
T ss_pred             ----------------------------CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCC
Confidence                                        01122357999999999998764 7899999999999999999999997532


Q ss_pred             ----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--C
Q 010140          402 ----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--S  474 (517)
Q Consensus       402 ----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~  474 (517)
                          .......+......++..         ....+.+||.+||+.||++||++. ..++++++||||++.+|..+.  .
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~~~~~~  282 (332)
T cd05614         212 ERNTQSEVSRRILKCDPPFPSF---------IGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALALRK  282 (332)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCC---------CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCC
Confidence                233344444444333321         112489999999999999999763 245699999999999998663  3


Q ss_pred             CCCCCCCC
Q 010140          475 IKPPEVPN  482 (517)
Q Consensus       475 ~~p~~~~~  482 (517)
                      ..+|+.|.
T Consensus       283 ~~~~~~~~  290 (332)
T cd05614         283 VNPPFRPS  290 (332)
T ss_pred             CCCCcCCC
Confidence            44554443

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-48  Score=383.59  Aligned_cols=252  Identities=26%  Similarity=0.429  Sum_probs=203.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..+++.+.+.||+|+||+||+|.+++.      ..||||++......... ...+.+|+.+|.+++|||||+++|++.+
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~~g~------~~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~  110 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKWRGT------DVVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTS  110 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEeCCc------eeEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            4455667777899999999999999862      33999999876544333 7788889999999999999999999998


Q ss_pred             Cc-eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 SH-YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 ~~-~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .. .++|||||+++|+|..++.......++....                            ..|+.||+.||.|||+++
T Consensus       111 ~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~----------------------------l~~aldiArGm~YLH~~~  162 (362)
T KOG0192|consen  111 PPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVR----------------------------LRIALDIARGMEYLHSEG  162 (362)
T ss_pred             CCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHH----------------------------HHHHHHHHHHHHHHhcCC
Confidence            87 7999999999999999997742233433322                            267899999999999999


Q ss_pred             -ceeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          240 -IVYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       240 -iiHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                       ||||||||+|||++.++ ++||+|||+++......                                            
T Consensus       163 ~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--------------------------------------------  198 (362)
T KOG0192|consen  163 PIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--------------------------------------------  198 (362)
T ss_pred             CeeecccChhhEEEcCCCCEEEECCCccceeecccc--------------------------------------------
Confidence             99999999999999998 99999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc--CCCCCccchHHHHHHHHHHHhhCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS--GQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~--~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                        ...+...||+.|||||++.  ...|+.++||||||++||||+||+.
T Consensus       199 ----------------------------------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~  244 (362)
T KOG0192|consen  199 ----------------------------------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEI  244 (362)
T ss_pred             ----------------------------------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCC
Confidence                                              1122357999999999999  5589999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||.+....+....+.......+... ...      ..+..||.+||..||..||+..
T Consensus       245 Pf~~~~~~~~~~~v~~~~~Rp~~p~-~~~------~~l~~l~~~CW~~dp~~RP~f~  294 (362)
T KOG0192|consen  245 PFEDLAPVQVASAVVVGGLRPPIPK-ECP------PHLSSLMERCWLVDPSRRPSFL  294 (362)
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCc-cCC------HHHHHHHHHhCCCCCCcCCCHH
Confidence            9999998776666664433322211 122      2489999999999999999996

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-49  Score=370.38  Aligned_cols=267  Identities=27%  Similarity=0.340  Sum_probs=210.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec---
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA---  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~---  160 (517)
                      ..|..++.||+|+||.|+.+.++.     +++.||||.+.... ......++..+|+.+|++++|+||+.+++++..   
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~-----t~~~VAIKKi~~~F-~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~   95 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKR-----TGEKVAIKKILNPF-ENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSR   95 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcC-----CCCEeehhhhhhhh-hchHHHHHHHHHHHHHHHhcCCCcceEEeecccccc
Confidence            456668999999999999999998     67999999987432 334556788889999999999999999999965   


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        -+.+|+|+|+| +.||.+.++...  .+                            ...+++.++.||+.||.|+|+.
T Consensus        96 ~~f~DvYiV~elM-etDL~~iik~~~--~L----------------------------~d~H~q~f~YQiLrgLKyiHSA  144 (359)
T KOG0660|consen   96 DKFNDVYLVFELM-ETDLHQIIKSQQ--DL----------------------------TDDHAQYFLYQILRGLKYIHSA  144 (359)
T ss_pred             cccceeEEehhHH-hhHHHHHHHcCc--cc----------------------------cHHHHHHHHHHHHHhcchhhcc
Confidence              45689999999 789999887642  12                            2334457889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||.|+|++.+..+||||||+|+.....                                              
T Consensus       145 nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~----------------------------------------------  178 (359)
T KOG0660|consen  145 NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKF----------------------------------------------  178 (359)
T ss_pred             cccccccchhheeeccCCCEEeccccceeecccc----------------------------------------------
Confidence            9999999999999999999999999999654321                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                    ......+.++.|.+|+|||++... .|+.+.||||+|||+.||++|++.|
T Consensus       179 ------------------------------~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplF  228 (359)
T KOG0660|consen  179 ------------------------------FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLF  228 (359)
T ss_pred             ------------------------------CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCC
Confidence                                          011223567899999999998654 5999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCC--------------------CCCC-CCCchhH-HhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLTF--------------------PRIG-VSSSKEF-EEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~--------------------p~~~-~~~~~~~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .|.+..+.+..|+.-....                    |... .+....+ ...+.+.||+.+||..||.+|+|++   
T Consensus       229 pG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~---  305 (359)
T KOG0660|consen  229 PGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAE---  305 (359)
T ss_pred             CCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHH---
Confidence            9988777766665421111                    1000 0000111 2234688999999999999999998   


Q ss_pred             HHhhcCCCcCCC
Q 010140          456 VEIKRHEFFKGI  467 (517)
Q Consensus       456 ~ell~hp~f~~~  467 (517)
                       |+|+||||...
T Consensus       306 -eAL~hPYl~~~  316 (359)
T KOG0660|consen  306 -EALAHPYLAPY  316 (359)
T ss_pred             -HHhcChhhhhh
Confidence             99999999864

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-49  Score=383.60  Aligned_cols=257  Identities=27%  Similarity=0.435  Sum_probs=214.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|+.++.||+|+||.||+|.+..     +++.||||++.-+..  ....+.+++|+.+|..++++||.++|+.|-.+..
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~-----t~k~vAiKii~Le~~--~deIediqqei~~Ls~~~~~~it~yygsyl~g~~   85 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNK-----TKKVVAIKIIDLEEA--EDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTK   85 (467)
T ss_pred             cccccchhccccccceeeeeeecc-----ccceEEEEEechhhc--chhhHHHHHHHHHHHhcCcchHHhhhhheeeccc
Confidence            458888999999999999999987     789999999987644  3556778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      ++++||||.||++.+.++..+.  +.+.+..                            .++++++.||.|||.++.+||
T Consensus        86 LwiiMey~~gGsv~~lL~~~~~--~~E~~i~----------------------------~ilre~l~~l~ylH~~~kiHr  135 (467)
T KOG0201|consen   86 LWIIMEYCGGGSVLDLLKSGNI--LDEFEIA----------------------------VILREVLKGLDYLHSEKKIHR  135 (467)
T ss_pred             HHHHHHHhcCcchhhhhccCCC--Cccceee----------------------------eehHHHHHHhhhhhhcceecc
Confidence            9999999999999998876432  1222222                            356999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||+.|||+..+|.+||+|||++-.+..                                                    
T Consensus       136 DIKaanil~s~~g~vkl~DfgVa~ql~~----------------------------------------------------  163 (467)
T KOG0201|consen  136 DIKAANILLSESGDVKLADFGVAGQLTN----------------------------------------------------  163 (467)
T ss_pred             cccccceeEeccCcEEEEecceeeeeec----------------------------------------------------
Confidence            9999999999999999999999833221                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                ...+..+++|||.|||||++.+..|+.++||||||++.+||++|.+||....++
T Consensus       164 --------------------------~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm  217 (467)
T KOG0201|consen  164 --------------------------TVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM  217 (467)
T ss_pred             --------------------------hhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcc
Confidence                                      112336789999999999999889999999999999999999999999988886


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..+..|-+..++  .......      +.+++||..||++||+.||+|.    +||+|+|++..
T Consensus       218 rvlflIpk~~PP--~L~~~~S------~~~kEFV~~CL~k~P~~RpsA~----~LLKh~FIk~a  269 (467)
T KOG0201|consen  218 RVLFLIPKSAPP--RLDGDFS------PPFKEFVEACLDKNPEFRPSAK----ELLKHKFIKRA  269 (467)
T ss_pred             eEEEeccCCCCC--ccccccC------HHHHHHHHHHhhcCcccCcCHH----HHhhhHHHHhc
Confidence            555555444322  2222222      2489999999999999999998    99999999863

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-49  Score=381.85  Aligned_cols=289  Identities=36%  Similarity=0.661  Sum_probs=251.3

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccce
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTL  154 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l  154 (517)
                      ......+.+.+++++..||-|+||.|-+++.+.     ....+|+|++++......++.+++..|..||..++.|.||+|
T Consensus       411 ~~e~a~v~l~dl~~iaTLGvGgFGRVELV~~~~-----~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrL  485 (732)
T KOG0614|consen  411 AEEFAQVKLSDLKRIATLGVGGFGRVELVKVNS-----QKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRL  485 (732)
T ss_pred             HhhhcccchhhhhhhhhcccCccceEEEEEecc-----cchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHH
Confidence            334556778899999999999999999999876     334699999999988888888999999999999999999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      |-.|.++.++|++||-|-||+|...++..  ..+....+                            |+|+.-+++|++|
T Consensus       486 YrTfrd~kyvYmLmEaClGGElWTiLrdR--g~Fdd~ta----------------------------rF~~acv~EAfeY  535 (732)
T KOG0614|consen  486 YRTFRDSKYVYMLMEACLGGELWTILRDR--GSFDDYTA----------------------------RFYVACVLEAFEY  535 (732)
T ss_pred             HHHhccchhhhhhHHhhcCchhhhhhhhc--CCcccchh----------------------------hhhHHHHHHHHHH
Confidence            99999999999999999999999988765  33444333                            4788999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++|||.|||||+|+|++.+|-+||.|||+|+.+..                                           
T Consensus       536 LH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~-------------------------------------------  572 (732)
T KOG0614|consen  536 LHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGS-------------------------------------------  572 (732)
T ss_pred             HHhcCceeccCChhheeeccCCceEEeehhhHHHhcc-------------------------------------------
Confidence            9999999999999999999999999999999966542                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          +.++-++||||.|.|||++....++.++|.||||+++|||++|.
T Consensus       573 ------------------------------------g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~  616 (732)
T KOG0614|consen  573 ------------------------------------GRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGS  616 (732)
T ss_pred             ------------------------------------CCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCC
Confidence                                                33566899999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccc
Q 010140          395 TPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~  471 (517)
                      +||.+.++...+..|+++.  +.+|.....         .+.+||+++...+|.+|++.. .++.+|.+|-||.+.||+-
T Consensus       617 pPFs~~dpmktYn~ILkGid~i~~Pr~I~k---------~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweg  687 (732)
T KOG0614|consen  617 PPFSGVDPMKTYNLILKGIDKIEFPRRITK---------TATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGFDWEG  687 (732)
T ss_pred             CCCCCCchHHHHHHHHhhhhhhhcccccch---------hHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcCChhh
Confidence            9999999999999999864  445543322         378999999999999999954 5788999999999999996


Q ss_pred             c--cCCCCCCCCCCccc
Q 010140          472 I--RSIKPPEVPNNDLY  486 (517)
Q Consensus       472 ~--~~~~p~~~~~~~~~  486 (517)
                      +  +.+.||++|....+
T Consensus       688 lr~~~L~pPi~~~va~p  704 (732)
T KOG0614|consen  688 LRSRTLPPPIIPSVANP  704 (732)
T ss_pred             hhhccCCCCccccCCCc
Confidence            6  56788888875443

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2e-48  Score=368.96  Aligned_cols=271  Identities=28%  Similarity=0.394  Sum_probs=213.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~  161 (517)
                      ...|..+++||+|+||+||+|+.+.     +++.||+|.++-+... +..-....+|+.+|+.|+|+| ||.|++++...
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~-----~g~~VALKkirl~~~~-EG~P~taiREisllk~L~~~~~iv~L~dv~~~~   83 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKR-----TGKFVALKKIRLEFEE-EGVPSTAIREISLLKRLSHANHIVRLHDVIHTS   83 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEec-----CCCEEEEEEEeccccc-cCCCchhhHHHHHHHHhCCCcceEEEEeeeeec
Confidence            3568888899999999999999997     7799999999765332 123345567999999999999 99999999877


Q ss_pred             c------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          162 H------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       162 ~------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +      .++||+||+ .-||..++...+......+.                          ..++.+++||+.||+||
T Consensus        84 ~~~~~~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~--------------------------~~ik~~m~Qll~gl~~~  136 (323)
T KOG0594|consen   84 NNHRGIGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPP--------------------------RLIKSFMRQLLRGLAFL  136 (323)
T ss_pred             ccccccceEEEEEEee-cccHHHHHHhccccccCCCH--------------------------HHHHHHHHHHHHHHHHH
Confidence            7      899999999 67999999886532111111                          23468899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |+++|+||||||+||||+.+|.+||+|||+|+.+....                                          
T Consensus       137 H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~------------------------------------------  174 (323)
T KOG0594|consen  137 HSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPM------------------------------------------  174 (323)
T ss_pred             HhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCc------------------------------------------
Confidence            99999999999999999999999999999995432110                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          ...+.-++|.+|+|||++.|. .|+..+||||+|||++||++++
T Consensus       175 ------------------------------------~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~  218 (323)
T KOG0594|consen  175 ------------------------------------RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRR  218 (323)
T ss_pred             ------------------------------------ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCC
Confidence                                                113345789999999999998 5999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCC-----CCCCCC-----------CCCchhH-----HhhhhHHHHHHHhccCCcccccCCCC
Q 010140          395 TPFKGENNEKTLINILKKPL-----TFPRIG-----------VSSSKEF-----EEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~-----~~p~~~-----------~~~~~~~-----~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      +.|.+..+.+.+.+|.+...     .+|...           ......+     ....+..+|+.+||+.+|.+|.++. 
T Consensus       219 ~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~-  297 (323)
T KOG0594|consen  219 PLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAK-  297 (323)
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHH-
Confidence            99999999888888864211     111110           0000000     0113678999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCC
Q 010140          454 GSVEIKRHEFFKGIN  468 (517)
Q Consensus       454 ~~~ell~hp~f~~~~  468 (517)
                         .++.||||...+
T Consensus       298 ---~al~h~yf~~~~  309 (323)
T KOG0594|consen  298 ---GALTHPYFSELP  309 (323)
T ss_pred             ---HHhcChhhcccc
Confidence               999999999763

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-49  Score=370.64  Aligned_cols=260  Identities=32%  Similarity=0.507  Sum_probs=204.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC---
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS---  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~---  161 (517)
                      .|.-.+++|.|+||.||+|....     +++.||||.+-.+.    ..   -.+|+.+|++++|||||+|..+|...   
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e-----~~~~vAIKKv~~d~----r~---knrEl~im~~l~HpNIV~L~~~f~~~~~~   92 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRE-----TEEEVAIKKVLQDK----RY---KNRELQIMRKLDHPNIVRLLYFFSSSTES   92 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcC-----CCceeEEEEecCCC----Cc---CcHHHHHHHhcCCcCeeeEEEEEEecCCC
Confidence            58899999999999999999997     57889999986552    11   22499999999999999999988532   


Q ss_pred             --ceeEEEEEecCCCchhHHHHhCC--CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 --HYSCLVMEYCPGGDLYAARQRQP--GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 --~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                        -++.|||||++ .+|.++++...  ..+++.-                            .++.|+.||++||.|||+
T Consensus        93 d~~~lnlVleymP-~tL~~~~r~~~~~~~~mp~~----------------------------~iKLYt~Qlfrgl~yLh~  143 (364)
T KOG0658|consen   93 DEVYLNLVLEYMP-ETLYRVIRHYTRANQRMPLL----------------------------EIKLYTYQLFRGLAYLHS  143 (364)
T ss_pred             chhHHHHHHHhch-HHHHHHHHHHhhcCCCCcee----------------------------eeHHHHHHHHHHHHHHHh
Confidence              25679999995 49999887632  2233332                            235788999999999999


Q ss_pred             cCceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      .||+||||||.|||+|.+ |.+||||||.|+.+...                                            
T Consensus       144 ~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~--------------------------------------------  179 (364)
T KOG0658|consen  144 HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKG--------------------------------------------  179 (364)
T ss_pred             cCcccCCCChheEEEcCCCCeEEeccCCcceeeccC--------------------------------------------
Confidence            999999999999999976 89999999999654421                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         ....++..|+.|+|||.+.|.. |+.+.||||.||++.||+-|++
T Consensus       180 -----------------------------------epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~p  224 (364)
T KOG0658|consen  180 -----------------------------------EPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQP  224 (364)
T ss_pred             -----------------------------------CCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCc
Confidence                                               1224567899999999999975 9999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcC-----------------CCCCCCCCCCCc---hhHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          396 PFKGENNEKTLINILKK-----------------PLTFPRIGVSSS---KEFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~-----------------~~~~p~~~~~~~---~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .|.|.+..+++..|.+-                 ...+|.......   ......+++.||+.++|.++|.+|.++.   
T Consensus       225 lFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~---  301 (364)
T KOG0658|consen  225 LFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSAL---  301 (364)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHH---
Confidence            99999888877776541                 111222111110   0112345689999999999999999998   


Q ss_pred             HHhhcCCCcCCCC
Q 010140          456 VEIKRHEFFKGIN  468 (517)
Q Consensus       456 ~ell~hp~f~~~~  468 (517)
                       |++.||||+...
T Consensus       302 -~~l~h~fFdelr  313 (364)
T KOG0658|consen  302 -EALAHPFFDELR  313 (364)
T ss_pred             -HHhcchhhHHhh
Confidence             999999998653

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-48  Score=377.89  Aligned_cols=263  Identities=30%  Similarity=0.466  Sum_probs=227.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +=|.+.+.||+|.|++|-+|++.-     ++..||||++.+..+... ...++..|+++|+.++|||||+||++......
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVF-----TGekVAVKviDKTKlD~~-st~hlfqEVRCMKLVQHpNiVRLYEViDTQTK   91 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVF-----TGEKVAVKVIDKTKLDTL-STGHLFQEVRCMKLVQHPNIVRLYEVIDTQTK   91 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhc-----ccceeEEEEecccccchh-hhhHHHHHHHHHHHhcCcCeeeeeehhcccce
Confidence            558999999999999999999887     789999999998766533 33556679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||+|+-.+|||++||.++. ..+.+..+                            ++|.+||+.|+.|+|...+|||
T Consensus        92 lyLiLELGD~GDl~DyImKHe-~Gl~E~La----------------------------~kYF~QI~~AI~YCHqLHVVHR  142 (864)
T KOG4717|consen   92 LYLILELGDGGDLFDYIMKHE-EGLNEDLA----------------------------KKYFAQIVHAISYCHQLHVVHR  142 (864)
T ss_pred             EEEEEEecCCchHHHHHHhhh-ccccHHHH----------------------------HHHHHHHHHHHHHHhhhhhhcc
Confidence            999999999999999998763 33444443                            4788999999999999999999


Q ss_pred             cCCCCceEE-ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          244 DLKPENVLV-REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       244 DLKp~NILl-~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||||+|+++ ..-|-|||.|||++..+..                                                   
T Consensus       143 DLKPENVVFFEKlGlVKLTDFGFSNkf~P---------------------------------------------------  171 (864)
T KOG4717|consen  143 DLKPENVVFFEKLGLVKLTDFGFSNKFQP---------------------------------------------------  171 (864)
T ss_pred             cCCcceeEEeeecCceEeeeccccccCCC---------------------------------------------------
Confidence            999999876 4678999999999854432                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  +.+..+.||+..|-|||++.|..| .+++||||||||||.|++|++||...+
T Consensus       172 ----------------------------G~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAN  223 (864)
T KOG4717|consen  172 ----------------------------GKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAN  223 (864)
T ss_pred             ----------------------------cchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccccc
Confidence                                        234567799999999999999998 568999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~  473 (517)
                      +.+.+..|+...+..|.-         .+.+++|||..||..||.+|.+.+    ||..|+|++.+|-....
T Consensus       224 DSETLTmImDCKYtvPsh---------vS~eCrdLI~sMLvRdPkkRAslE----eI~s~~Wlq~~D~~~sT  282 (864)
T KOG4717|consen  224 DSETLTMIMDCKYTVPSH---------VSKECRDLIQSMLVRDPKKRASLE----EIVSTSWLQAGDRGLST  282 (864)
T ss_pred             chhhhhhhhcccccCchh---------hhHHHHHHHHHHHhcCchhhccHH----HHhccccccCCCCCccc
Confidence            999999999998887753         233689999999999999999987    99999999999865443

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.6e-47  Score=373.73  Aligned_cols=277  Identities=36%  Similarity=0.600  Sum_probs=215.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++.+.||+|+||.||+|.++.     +++.||+|.+.............+..|+.+++.++|+||+.+++.+.+++..
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~   75 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRA-----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcC-----CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEE
Confidence            37889999999999999999987     6789999998765443333345566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||++|++|.+++.......++....                            ..++.|++.||.|||++||+|||
T Consensus        76 ~lv~e~~~g~~L~~~l~~~~~~~l~~~~~----------------------------~~~~~qi~~~l~~lH~~~iiH~d  127 (285)
T cd05630          76 CLVLTLMNGGDLKFHIYHMGEAGFEEGRA----------------------------VFYAAEICCGLEDLHQERIVYRD  127 (285)
T ss_pred             EEEEEecCCCcHHHHHHHhcccCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCEEeCC
Confidence            99999999999998886543333333322                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++.....                                                     
T Consensus       128 ikp~Nil~~~~~~~~l~Dfg~~~~~~~-----------------------------------------------------  154 (285)
T cd05630         128 LKPENILLDDHGHIRISDLGLAVHVPE-----------------------------------------------------  154 (285)
T ss_pred             CCHHHEEECCCCCEEEeeccceeecCC-----------------------------------------------------
Confidence            999999999999999999998732110                                                     


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH-
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE-  403 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~-  403 (517)
                                                ........||+.|+|||++.+..++.++||||+||++|+|++|+.||...... 
T Consensus       155 --------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~  208 (285)
T cd05630         155 --------------------------GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI  208 (285)
T ss_pred             --------------------------CccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccc
Confidence                                      00011236899999999999988999999999999999999999999875432 


Q ss_pred             --HHHHHHhcC-CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccccC--CCC
Q 010140          404 --KTLINILKK-PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIRS--IKP  477 (517)
Q Consensus       404 --~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~~--~~p  477 (517)
                        .....+... ....+.   .      ...++.+||.+||+.||++||++. ..+.|+++||||+.++|..+..  .+|
T Consensus       209 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~  279 (285)
T cd05630         209 KREEVERLVKEVQEEYSE---K------FSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEP  279 (285)
T ss_pred             hHHHHHhhhhhhhhhcCc---c------CCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhccCHHHHhcCCCCC
Confidence              222222211 111111   1      122489999999999999999942 1234999999999999997744  667


Q ss_pred             CCCCC
Q 010140          478 PEVPN  482 (517)
Q Consensus       478 ~~~~~  482 (517)
                      |+.|.
T Consensus       280 ~~~~~  284 (285)
T cd05630         280 PFKPD  284 (285)
T ss_pred             CCCCC
Confidence            76664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.4e-47  Score=381.01  Aligned_cols=264  Identities=39%  Similarity=0.727  Sum_probs=215.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||++++....  .+++.||+|++.+..... ....++..|+.+|++++||||+++++++..++.+|+|||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~--~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   78 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGP--DAGQLYAMKVLKKATLKV-RDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILD   78 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccC--CCCCEEEEEEEEHHHhhh-hhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEc
Confidence            57999999999999875321  157899999998765432 233456679999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|.+++...  ..+++..                            ++.++.||+.||+|||++||+||||||+|
T Consensus        79 ~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~H~dlkp~N  128 (318)
T cd05582          79 FLRGGDLFTRLSKE--VMFTEED----------------------------VKFYLAELALALDHLHSLGIIYRDLKPEN  128 (318)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEecCCCCHHH
Confidence            99999999888653  2222222                            24678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.....                                                         
T Consensus       129 il~~~~~~~kL~Dfg~~~~~~~~---------------------------------------------------------  151 (318)
T cd05582         129 ILLDEEGHIKLTDFGLSKESIDH---------------------------------------------------------  151 (318)
T ss_pred             eEECCCCcEEEeeccCCcccCCC---------------------------------------------------------
Confidence            99999999999999997432110                                                         


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                           ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+..+
T Consensus       152 ---------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i  210 (318)
T cd05582         152 ---------------------EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMI  210 (318)
T ss_pred             ---------------------CCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHH
Confidence                                 01122357999999999999988999999999999999999999999998888888888


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCccccc
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~  473 (517)
                      ......+|...         ..++.+||.+||+.||++||++.+ .+.+++.||||+.++|..+.
T Consensus       211 ~~~~~~~p~~~---------~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
T cd05582         211 LKAKLGMPQFL---------SPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNKLY  266 (318)
T ss_pred             HcCCCCCCCCC---------CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCCCHHHHH
Confidence            77665554321         124899999999999999999853 36789999999999999763

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.7e-47  Score=376.63  Aligned_cols=263  Identities=28%  Similarity=0.367  Sum_probs=202.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++.++||.|+||.||+|+++.     +++.||+|+++....  ......+.+|+.+++.++||||+++++++...+
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   76 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKL-----TENLVALKEIRLEHE--EGAPCTAIREVSLLKNLKHANIVTLHDIIHTER   76 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECC-----CCCEEEEEEeccccc--CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            5789999999999999999999876     678999999864421  122345567999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++ |+|.+++.... ..++..                            .++.++.||+.||+|||++||+|
T Consensus        77 ~~~lv~e~~~-~~l~~~l~~~~-~~~~~~----------------------------~~~~~~~qi~~aL~~LH~~~ivH  126 (288)
T cd07871          77 CLTLVFEYLD-SDLKQYLDNCG-NLMSMH----------------------------NVKIFMFQLLRGLSYCHKRKILH  126 (288)
T ss_pred             eEEEEEeCCC-cCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999996 59988876532 112222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       127 ~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~--------------------------------------------------  156 (288)
T cd07871         127 RDLKPQNLLINEKGELKLADFGLARAKSVP--------------------------------------------------  156 (288)
T ss_pred             CCCCHHHEEECCCCCEEECcCcceeeccCC--------------------------------------------------
Confidence            999999999999999999999998432100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........||+.|+|||++.+ ..++.++|||||||++|+|++|++||.+.+
T Consensus       157 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~  208 (288)
T cd07871         157 ----------------------------TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGST  208 (288)
T ss_pred             ----------------------------CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        001122368999999999876 458999999999999999999999999888


Q ss_pred             hHHHHHHHhcCCCCC-------------------CCCCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTF-------------------PRIGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~-------------------p~~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+.+..+.......                   |........  ......+++|||.+||++||.+|||+.    |+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~----~~l~  284 (288)
T cd07871         209 VKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAE----AALR  284 (288)
T ss_pred             HHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHH----HHhc
Confidence            776665554321110                   000000000  001224589999999999999999998    9999


Q ss_pred             CCCc
Q 010140          461 HEFF  464 (517)
Q Consensus       461 hp~f  464 (517)
                      ||||
T Consensus       285 hp~f  288 (288)
T cd07871         285 HSYF  288 (288)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=5e-47  Score=376.08  Aligned_cols=268  Identities=28%  Similarity=0.413  Sum_probs=201.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++.     +++.||||++......  .....+.+|+.+++.++||||+++++++.+..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   76 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKV-----NGKLVALKVIRLQEEE--GTPFTAIREASLLKGLKHANIVLLHDIIHTKE   76 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECC-----CCCEEEEEEecccccc--ccchhHHHHHHHHhhCCCCCcCeEEEEEecCC
Confidence            3789999999999999999999876     6788999998754211  22234567999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+ +++|.+++.... ..+....                            ++.++.||+.||+|||++||+|
T Consensus        77 ~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~al~~lH~~~ivH  126 (303)
T cd07869          77 TLTLVFEYV-HTDLCQYMDKHP-GGLHPEN----------------------------VKLFLFQLLRGLSYIHQRYILH  126 (303)
T ss_pred             eEEEEEECC-CcCHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeec
Confidence            999999999 568888776532 2222222                            2467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       127 ~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------  156 (303)
T cd07869         127 RDLKPQNLLISDTGELKLADFGLARAKSVP--------------------------------------------------  156 (303)
T ss_pred             CCCCHHHEEECCCCCEEECCCCcceeccCC--------------------------------------------------
Confidence            999999999999999999999997422100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........||+.|+|||++.+. .++.++|||||||++|+|++|..||.+..
T Consensus       157 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  208 (303)
T cd07869         157 ----------------------------SHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK  208 (303)
T ss_pred             ----------------------------CccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence                                        0011234689999999998764 47899999999999999999999998765


Q ss_pred             hH-HHHHHHhc---CCC--CCC------CCC-----CCCch----hH---HhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          402 NE-KTLINILK---KPL--TFP------RIG-----VSSSK----EF---EEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       402 ~~-~~~~~i~~---~~~--~~p------~~~-----~~~~~----~~---~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      .. +.+..+..   ...  .++      ...     .....    .+   .....+.+||.+||+.||++|||+.    |
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~----~  284 (303)
T cd07869         209 DIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQ----A  284 (303)
T ss_pred             cHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHH----H
Confidence            42 22322221   100  000      000     00000    00   1123578999999999999999998    9


Q ss_pred             hhcCCCcCCCCc
Q 010140          458 IKRHEFFKGINW  469 (517)
Q Consensus       458 ll~hp~f~~~~~  469 (517)
                      +++||||+++++
T Consensus       285 ~l~h~~f~~~~~  296 (303)
T cd07869         285 ALSHEYFSDLPP  296 (303)
T ss_pred             HhcCcccccCCh
Confidence            999999998865

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=3.4e-46  Score=366.83  Aligned_cols=281  Identities=36%  Similarity=0.583  Sum_probs=219.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|+..+.||+|+||+||+|.+..     +++.||+|++.............+.+|+.+|+.++|+||+.+++.+..++..
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~   75 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRA-----TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECC-----CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEE
Confidence            37889999999999999999886     6789999999776544444445567799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|..++.......++....                            ..++.|++.||.|||++||+|||
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~ql~~~l~~lH~~~iiH~d  127 (285)
T cd05632          76 CLVLTIMNGGDLKFHIYNMGNPGFEEERA----------------------------LFYAAEILCGLEDLHRENTVYRD  127 (285)
T ss_pred             EEEEEeccCccHHHHHHHhcCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeeecC
Confidence            99999999999988876543333433333                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.+||+|||++.....                                                     
T Consensus       128 ikp~Nili~~~~~~kl~Dfg~~~~~~~-----------------------------------------------------  154 (285)
T cd05632         128 LKPENILLDDYGHIRISDLGLAVKIPE-----------------------------------------------------  154 (285)
T ss_pred             CCHHHEEECCCCCEEEecCCcceecCC-----------------------------------------------------
Confidence            999999999999999999998733210                                                     


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                ........|++.|+|||++.+..++.++|||||||++|+|++|..||.+.....
T Consensus       155 --------------------------~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~  208 (285)
T cd05632         155 --------------------------GESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV  208 (285)
T ss_pred             --------------------------CCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                      001123368999999999998889999999999999999999999998876544


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc--cCCCCCCCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI--RSIKPPEVP  481 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~--~~~~p~~~~  481 (517)
                      ....+.............     .....+.+||.+||+.||++||++.+ .+.++++|+||+..+|..+  +.+.|+++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  283 (285)
T cd05632         209 KREEVDRRVLETEEVYSA-----KFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPFVP  283 (285)
T ss_pred             HHHHHHHhhhccccccCc-----cCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCCHHHHhcCcCCCCCCC
Confidence            333332211111111000     11224899999999999999999643 3569999999999999965  456677766


Q ss_pred             C
Q 010140          482 N  482 (517)
Q Consensus       482 ~  482 (517)
                      .
T Consensus       284 ~  284 (285)
T cd05632         284 D  284 (285)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9.7e-47  Score=370.88  Aligned_cols=264  Identities=27%  Similarity=0.358  Sum_probs=202.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||+|++...... ......+.+|+.+++.++||||+++++++..++.
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   74 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKE-----TKEIVAIKKFKDSEEN-EEVKETTLRELKMLRTLKQENIVELKEAFRRRGK   74 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECC-----CCcEEEEEEEeccccc-ccchhhHHHHHHHHHhCCCccccchhhhEecCCE
Confidence            479999999999999999999986     6788999998754321 2334566679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++++.|..+....  ..+.+..                            ++.++.||+.||+|||++||+||
T Consensus        75 ~~lv~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~qi~~~L~~lH~~~i~H~  124 (287)
T cd07848          75 LYLVFEYVEKNMLELLEEMP--NGVPPEK----------------------------VRSYIYQLIKAIHWCHKNDIVHR  124 (287)
T ss_pred             EEEEEecCCCCHHHHHHhcC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecC
Confidence            99999999887665443321  2222222                            24678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++......                                                  
T Consensus       125 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------------  154 (287)
T cd07848         125 DIKPENLLISHNDVLKLCDFGFARNLSEGS--------------------------------------------------  154 (287)
T ss_pred             CCCHHHEEEcCCCcEEEeeccCcccccccc--------------------------------------------------
Confidence            999999999999999999999984322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 ........||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..
T Consensus       155 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~  207 (287)
T cd07848         155 ---------------------------NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEI  207 (287)
T ss_pred             ---------------------------cccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHH
Confidence                                       00112346899999999999988999999999999999999999999987765


Q ss_pred             HHHHHHhcCCCC-------------------CCCCCCCCchh----HHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          404 KTLINILKKPLT-------------------FPRIGVSSSKE----FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       404 ~~~~~i~~~~~~-------------------~p~~~~~~~~~----~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +....+......                   ++.........    ...+.++.+||.+||+.||++|||+.    |+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~----~~l~  283 (287)
T cd07848         208 DQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTE----QCLN  283 (287)
T ss_pred             HHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHH----HHhc
Confidence            544433321111                   11110000000    01234589999999999999999998    9999


Q ss_pred             CCCc
Q 010140          461 HEFF  464 (517)
Q Consensus       461 hp~f  464 (517)
                      ||||
T Consensus       284 hp~f  287 (287)
T cd07848         284 HPAF  287 (287)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.8e-46  Score=382.45  Aligned_cols=263  Identities=23%  Similarity=0.378  Sum_probs=200.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|.+..     +++.||+|.....         .+.+|+.+|++++|||||+++++|
T Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~d~~-----~~~~vaiK~~~~~---------~~~~E~~il~~l~HpnIv~~~~~~  152 (391)
T PHA03212         87 AGIEKAGFSILETFTPGAEGFAFACIDNK-----TCEHVVIKAGQRG---------GTATEAHILRAINHPSIIQLKGTF  152 (391)
T ss_pred             cccccCCcEEEEEEcCCCCeEEEEEEECC-----CCCEEEEechhhh---------hhHHHHHHHHhCCCCCCCCEeEEE
Confidence            34556789999999999999999999987     6789999975432         345699999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..+...|+|||++ +++|..++...  ..++...                            ++.++.||+.||+|||++
T Consensus       153 ~~~~~~~lv~e~~-~~~L~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~aL~ylH~~  201 (391)
T PHA03212        153 TYNKFTCLILPRY-KTDLYCYLAAK--RNIAICD----------------------------ILAIERSVLRAIQYLHEN  201 (391)
T ss_pred             EECCeeEEEEecC-CCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            9999999999999 57898887653  2232222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+|||++.++.+||+|||+++.....                                              
T Consensus       202 ~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~----------------------------------------------  235 (391)
T PHA03212        202 RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDI----------------------------------------------  235 (391)
T ss_pred             CcccCCCChHhEEEcCCCCEEEEeCCcccccccc----------------------------------------------
Confidence            9999999999999999999999999998421100                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       236 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~  284 (391)
T PHA03212        236 -------------------------------NANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF  284 (391)
T ss_pred             -------------------------------cccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence                                           0011234579999999999999889999999999999999999998875


Q ss_pred             CCC-------hHHHHHHHhcCCCCCC--------------------------CCCCCCchhHHhhhhHHHHHHHhccCCc
Q 010140          399 GEN-------NEKTLINILKKPLTFP--------------------------RIGVSSSKEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       399 ~~~-------~~~~~~~i~~~~~~~p--------------------------~~~~~~~~~~~~~~~l~dLi~~~L~~dP  445 (517)
                      ...       ....+..+.......|                          ..............++.+||.+||+.||
T Consensus       285 ~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP  364 (391)
T PHA03212        285 EKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDA  364 (391)
T ss_pred             CcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCCh
Confidence            432       1122222221111100                          0000001111234568999999999999


Q ss_pred             ccccCCCCChHHhhcCCCcCCC
Q 010140          446 KKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       446 ~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+|||+.    |+|+||||+.+
T Consensus       365 ~~Rpta~----elL~hp~f~~~  382 (391)
T PHA03212        365 HHRPSAE----ALLDFAAFQDI  382 (391)
T ss_pred             hhCCCHH----HHhcChhhccC
Confidence            9999998    99999999864

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-48  Score=385.57  Aligned_cols=263  Identities=29%  Similarity=0.438  Sum_probs=218.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+.|.|+..||.|+||.||+|..+.     ++-..|-|+|....   ...++.+..|+.||..++||+||+|++.|...+
T Consensus        31 ~d~WeIiGELGDGAFGKVyKA~nke-----t~~lAAaKvIetks---eEELEDylVEIeILa~CdHP~ivkLl~ayy~en  102 (1187)
T KOG0579|consen   31 RDHWEIIGELGDGAFGKVYKAVNKE-----TKLLAAAKVIETKS---EEELEDYLVEIEILAECDHPVIVKLLSAYYFEN  102 (1187)
T ss_pred             HHHHHHHhhhcCccchhhhhhhccc-----chhhhhhhhhcccc---hhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC
Confidence            3568899999999999999999886     56677889886442   356778888999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+||+.|||.||-...++-... ..+.                            ..+++.+++|++.||.|||+++|||
T Consensus       103 kLwiliEFC~GGAVDaimlEL~-r~Lt----------------------------E~QIqvvc~q~ldALn~LHs~~iIH  153 (1187)
T KOG0579|consen  103 KLWILIEFCGGGAVDAIMLELG-RVLT----------------------------EDQIQVVCYQVLDALNWLHSQNIIH  153 (1187)
T ss_pred             ceEEEEeecCCchHhHHHHHhc-cccc----------------------------hHHHHHHHHHHHHHHHHHhhcchhh
Confidence            9999999999999887765532 2333                            3444578899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||||..|||++.+|.++|+|||.+.+..                                                    
T Consensus       154 RDLKAGNiL~TldGdirLADFGVSAKn~----------------------------------------------------  181 (1187)
T KOG0579|consen  154 RDLKAGNILLTLDGDIRLADFGVSAKNK----------------------------------------------------  181 (1187)
T ss_pred             hhccccceEEEecCcEeeecccccccch----------------------------------------------------
Confidence            9999999999999999999999973211                                                    


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                ....+..+++|||+|||||+..+     .+|++++||||||++|.||..+.+|.
T Consensus       182 --------------------------~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPH  235 (1187)
T KOG0579|consen  182 --------------------------STRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPH  235 (1187)
T ss_pred             --------------------------hHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCc
Confidence                                      01223457899999999999754     57999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      ...++..++.+|.+..++.......+..      .+.||+.+||.+||..||+++    +||+||||.+++-+
T Consensus       236 helnpMRVllKiaKSePPTLlqPS~Ws~------~F~DfLk~cL~Knp~~Rp~aa----qll~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  236 HELNPMRVLLKIAKSEPPTLLQPSHWSR------SFSDFLKRCLVKNPRNRPPAA----QLLKHPFVQNAPSN  298 (1187)
T ss_pred             cccchHHHHHHHhhcCCCcccCcchhhh------HHHHHHHHHHhcCCccCCCHH----HHhhCcccccCCcc
Confidence            9999999999998765433222222222      389999999999999999998    99999999976543

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.9e-46  Score=392.19  Aligned_cols=260  Identities=24%  Similarity=0.355  Sum_probs=195.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC------CCCcccee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD------HPFLPTLY  155 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~l~  155 (517)
                      ..++|+++++||+|+||+||+|.+..     .++.||||+++...    ........|+.++..++      |++|++++
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~-----~~~~vAvK~i~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~  197 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRK-----RKEYCAVKIVRNVP----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQ  197 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcC-----CCeEEEEEEEecch----hhHHHHHHHHHHHHHHhhcCcccCcceeeeE
Confidence            45789999999999999999999876     67889999996432    11223344777776664      45688999


Q ss_pred             eeeecC-ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          156 AEFEAS-HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       156 ~~~~~~-~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      ++|... .++|+|||++ |++|.+++...  ..+....                            ++.|+.||+.||+|
T Consensus       198 ~~~~~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~aL~y  246 (467)
T PTZ00284        198 RYFQNETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRH----------------------------LAQIIFQTGVALDY  246 (467)
T ss_pred             EEEEcCCceEEEEEecc-CCCHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence            988754 5789999999 88898887654  2233222                            24678999999999


Q ss_pred             HHh-cCceeccCCCCceEEccCC----------------cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCC
Q 010140          235 LHM-MGIVYRDLKPENVLVREDG----------------HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCA  297 (517)
Q Consensus       235 LH~-~~iiHrDLKp~NILl~~~~----------------~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (517)
                      ||+ .|||||||||+|||++.++                .+||+|||++....                           
T Consensus       247 LH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~---------------------------  299 (467)
T PTZ00284        247 FHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER---------------------------  299 (467)
T ss_pred             HHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCc---------------------------
Confidence            998 5999999999999998765                49999999862110                           


Q ss_pred             CCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCcc
Q 010140          298 TPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSA  377 (517)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~  377 (517)
                                                                            ......+||+.|+|||++.+..|+.+
T Consensus       300 ------------------------------------------------------~~~~~~~gt~~Y~APE~~~~~~~~~~  325 (467)
T PTZ00284        300 ------------------------------------------------------HSRTAIVSTRHYRSPEVVLGLGWMYS  325 (467)
T ss_pred             ------------------------------------------------------cccccccCCccccCcHHhhcCCCCcH
Confidence                                                                  01234579999999999999999999


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCC---------------------CCCc------------
Q 010140          378 VDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIG---------------------VSSS------------  424 (517)
Q Consensus       378 ~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~---------------------~~~~------------  424 (517)
                      +|||||||++|||++|++||.+.+..+.+..+......+|...                     ....            
T Consensus       326 ~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T PTZ00284        326 TDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPV  405 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccch
Confidence            9999999999999999999998877665544433211111000                     0000            


Q ss_pred             hhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          425 KEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       425 ~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ........+.|||.+||++||++|||+.    |+|+||||..
T Consensus       406 ~~~~~~~~~~dli~~mL~~dP~~R~ta~----e~L~Hp~~~~  443 (467)
T PTZ00284        406 REVIRDDLLCDLIYGLLHYDRQKRLNAR----QMTTHPYVLK  443 (467)
T ss_pred             hhhhchHHHHHHHHHhCCcChhhCCCHH----HHhcCccccc
Confidence            0001123578999999999999999998    9999999985

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.1e-45  Score=364.12  Aligned_cols=265  Identities=42%  Similarity=0.766  Sum_probs=221.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|.+..     .++.||+|++.+...........+.+|+.++++++||||+++++++.+++.
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKG-----SGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCe
Confidence            479999999999999999999886     578899999987665545556778889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|.+++...  ..++....                            ..++.||+.||.|||++||+||
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~--~~l~~~~~----------------------------~~~~~qil~~l~~lH~~~i~H~  125 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKS--GRFPEPVA----------------------------RFYAAQVVLALEYLHSLDIVYR  125 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCEecC
Confidence            99999999999999988764  22332222                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+|||++.++.+||+|||++.....                                                    
T Consensus       126 dl~p~nili~~~~~~kl~dfg~~~~~~~----------------------------------------------------  153 (290)
T cd05580         126 DLKPENLLLDSDGYIKITDFGFAKRVKG----------------------------------------------------  153 (290)
T ss_pred             CCCHHHEEECCCCCEEEeeCCCccccCC----------------------------------------------------
Confidence            9999999999999999999999743211                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                   ......|++.|+|||.+.+..++.++||||||+++|+|++|..||...+..
T Consensus       154 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  204 (290)
T cd05580         154 -----------------------------RTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPI  204 (290)
T ss_pred             -----------------------------CCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                         012336889999999998888899999999999999999999999988877


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCC-CCChHHhhcCCCcCCCCccccc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~-~~~~~ell~hp~f~~~~~~~~~  473 (517)
                      .....+..+...+|...         ...++++|.+||..||.+|++. ...++|+++||||+.++|..+.
T Consensus       205 ~~~~~~~~~~~~~~~~~---------~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (290)
T cd05580         205 QIYEKILEGKVRFPSFF---------SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALL  266 (290)
T ss_pred             HHHHHHhcCCccCCccC---------CHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCCHHHHh
Confidence            77777776655554322         1248999999999999999943 2455699999999999998774

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-47  Score=378.90  Aligned_cols=259  Identities=30%  Similarity=0.494  Sum_probs=220.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|..++++|+|+||.+++++++.     ..+.|++|.+.-.....+.. .....|+.++++++|||||.+++.|..++
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~-----~~~~~vlK~I~l~~~t~~~r-~~A~~E~~lis~~~hP~iv~y~ds~~~~~   76 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKS-----DDKLYVLKKINLEKLTEPER-RSAIQEMDLLSKLLHPNIVEYKDSFEEDG   76 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhcc-----CCceEEEEEEeccccCchhh-HHHHHHHHHHHhccCCCeeeeccchhcCC
Confidence            5789999999999999999999987     67799999998665443322 35667999999999999999999998887


Q ss_pred             e-eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          163 Y-SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       163 ~-~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      . +||||+||+||+|.+.+....+..+++...                            ..|+.||+.||.|||+++|+
T Consensus        77 ~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i----------------------------~~~~~Q~~~av~ylH~~~iL  128 (426)
T KOG0589|consen   77 QLLCIVMEYCEGGDLAQLIKEQKGVLFPEERI----------------------------LKWFVQILLAVNYLHENRVL  128 (426)
T ss_pred             ceEEEEEeecCCCCHHHHHHHHhhccccHHHH----------------------------HHHHHHHHHHHHHHHhhhhh
Confidence            7 999999999999999998876444444333                            26778999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |||||+.||+++.++.|||+|||+|+.+...                                                 
T Consensus       129 HRDlK~~Nifltk~~~VkLgDfGlaK~l~~~-------------------------------------------------  159 (426)
T KOG0589|consen  129 HRDLKCANIFLTKDKKVKLGDFGLAKILNPE-------------------------------------------------  159 (426)
T ss_pred             cccchhhhhhccccCceeecchhhhhhcCCc-------------------------------------------------
Confidence            9999999999999999999999999665421                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .....+.+|||.||+||++.+.+|+.|+|||||||++|||++-+++|.+.+
T Consensus       160 -----------------------------~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~  210 (426)
T KOG0589|consen  160 -----------------------------DSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN  210 (426)
T ss_pred             -----------------------------hhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc
Confidence                                         112356789999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ...+..+|.......  .......      +++.||..||..+|..||++.    +||.+|...
T Consensus       211 m~~Li~ki~~~~~~P--lp~~ys~------el~~lv~~~l~~~P~~RPsa~----~LL~~P~l~  262 (426)
T KOG0589|consen  211 MSELILKINRGLYSP--LPSMYSS------ELRSLVKSMLRKNPEHRPSAL----ELLRRPHLL  262 (426)
T ss_pred             hHHHHHHHhhccCCC--CCccccH------HHHHHHHHHhhcCCccCCCHH----HHhhChhhh
Confidence            999999998876322  1222222      489999999999999999998    999998876

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=8.1e-46  Score=371.97  Aligned_cols=267  Identities=26%  Similarity=0.364  Sum_probs=207.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|++..     ++..||+|++..+..  .....++.+|+.+|+.++||||+++++++..
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   74 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKP-----SGLIMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGFYGAFYS   74 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECC-----CCcEEEEEEeecccC--HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE
Confidence            346899999999999999999999886     678899999875421  2334567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-C
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-G  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~  239 (517)
                      ++..|+||||++||+|.+++....  .++...                            +..++.|++.||.|||++ +
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~~  124 (331)
T cd06649          75 DGEISICMEHMDGGSLDQVLKEAK--RIPEEI----------------------------LGKVSIAVLRGLAYLREKHQ  124 (331)
T ss_pred             CCEEEEEeecCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999887642  222222                            236789999999999986 6


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||++.....                                                
T Consensus       125 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------------------------------  156 (331)
T cd06649         125 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLID------------------------------------------------  156 (331)
T ss_pred             EEcCCCChhhEEEcCCCcEEEccCcccccccc------------------------------------------------
Confidence            99999999999999999999999999743210                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      .......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       157 --------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         157 --------------------------------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             --------------------------------cccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence                                            011234689999999999998899999999999999999999999987


Q ss_pred             CChHHHHHHHhcCCCC-----CCC----C-----C--------------------------CCCchhHHhhhhHHHHHHH
Q 010140          400 ENNEKTLINILKKPLT-----FPR----I-----G--------------------------VSSSKEFEEVVKLQDLISK  439 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~-----~p~----~-----~--------------------------~~~~~~~~~~~~l~dLi~~  439 (517)
                      .+..+... +......     .+.    .     .                          ...........++++||.+
T Consensus       205 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  283 (331)
T cd06649         205 PDAKELEA-IFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNK  283 (331)
T ss_pred             CCHHHHHH-HhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHH
Confidence            66544322 2211000     000    0     0                          0000000123468999999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      ||++||++|||+.    ||++||||+....
T Consensus       284 ~L~~~P~~Rpt~~----ell~h~~~~~~~~  309 (331)
T cd06649         284 CLIKNPAERADLK----MLMNHTFIKRSEV  309 (331)
T ss_pred             HccCCcccCCCHH----HHhcChHHhhccc
Confidence            9999999999998    9999999986543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=3.9e-46  Score=387.27  Aligned_cols=267  Identities=25%  Similarity=0.393  Sum_probs=200.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ....++|++++.||+|+||.||+|.+..     +++.||||.+....       ....+|+.+|+.++|||||+++++|.
T Consensus        62 ~~~~~~y~~~~~LG~G~fg~Vy~~~~~~-----~~~~vAiK~i~~~~-------~~~~~Ei~il~~l~h~niv~l~~~~~  129 (440)
T PTZ00036         62 RSPNKSYKLGNIIGNGSFGVVYEAICID-----TSEKVAIKKVLQDP-------QYKNRELLIMKNLNHINIIFLKDYYY  129 (440)
T ss_pred             cCcCCeEEEeEEEEeCCCEEEEEEEECC-----CCCEEEEEEEecCc-------chHHHHHHHHHhcCCCCCcceeeeEe
Confidence            3455789999999999999999999876     67889999886432       12235999999999999999998774


Q ss_pred             c--------CceeEEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          160 A--------SHYSCLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       160 ~--------~~~~~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      .        ...+|+||||++ ++|.+++.....  ..+++.                            .++.|+.||+
T Consensus       130 ~~~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~----------------------------~~~~~~~qi~  180 (440)
T PTZ00036        130 TECFKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLF----------------------------LVKLYSYQLC  180 (440)
T ss_pred             ecccccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHH----------------------------HHHHHHHHHH
Confidence            2        235789999996 578777654321  222222                            2346789999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      .||+|||++|||||||||+|||++.++ .+||+|||+|+.+..                                     
T Consensus       181 ~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~-------------------------------------  223 (440)
T PTZ00036        181 RALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLA-------------------------------------  223 (440)
T ss_pred             HHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccC-------------------------------------
Confidence            999999999999999999999998665 799999999843221                                     


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFL  387 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil  387 (517)
                                                                .......+||+.|+|||++.+. .|+.++|||||||++
T Consensus       224 ------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil  261 (440)
T PTZ00036        224 ------------------------------------------GQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCII  261 (440)
T ss_pred             ------------------------------------------CCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHH
Confidence                                                      0011234689999999998765 589999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCC-----------------CCCCCCCCCCch-hH--HhhhhHHHHHHHhccCCccc
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKP-----------------LTFPRIGVSSSK-EF--EEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~-----------------~~~p~~~~~~~~-~~--~~~~~l~dLi~~~L~~dP~~  447 (517)
                      |||++|.+||.+.+..+.+.++....                 ..+|........ .+  ..+.++.+||.+||++||.+
T Consensus       262 ~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~  341 (440)
T PTZ00036        262 AEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLK  341 (440)
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhH
Confidence            99999999999987776666554311                 111111100000 00  12346899999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCCCcc
Q 010140          448 RIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      |||+.    |+|+||||+.+...
T Consensus       342 R~ta~----e~l~hp~f~~~~~~  360 (440)
T PTZ00036        342 RLNPI----EALADPFFDDLRDP  360 (440)
T ss_pred             CcCHH----HHhCChhHHhhhcc
Confidence            99998    99999999876553

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.3e-45  Score=373.77  Aligned_cols=256  Identities=27%  Similarity=0.368  Sum_probs=196.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|+++++||+|+||.||+|++..     +++.||||++.....  ......+.+|+.+|+.++|+||+++++++..
T Consensus        71 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  143 (353)
T PLN00034         71 KSLSELERVNRIGSGAGGTVYKVIHRP-----TGRLYALKVIYGNHE--DTVRRQICREIEILRDVNHPNVVKCHDMFDH  143 (353)
T ss_pred             CCHHHHhhhhhccCCCCeEEEEEEECC-----CCCEEEEEEEecCCc--HHHHHHHHHHHHHHHhCCCCCcceeeeEecc
Confidence            345678899999999999999999876     678899999864421  2334567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|+||||+++|+|.....      ...                            ..+..++.||+.||+|||++||
T Consensus       144 ~~~~~lv~e~~~~~~L~~~~~------~~~----------------------------~~~~~i~~qi~~aL~~LH~~~i  189 (353)
T PLN00034        144 NGEIQVLLEFMDGGSLEGTHI------ADE----------------------------QFLADVARQILSGIAYLHRRHI  189 (353)
T ss_pred             CCeEEEEEecCCCCccccccc------CCH----------------------------HHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999999854211      111                            1123678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.+...                                                
T Consensus       190 vHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~------------------------------------------------  221 (353)
T PLN00034        190 VHRDIKPSNLLINSAKNVKIADFGVSRILAQT------------------------------------------------  221 (353)
T ss_pred             eecCCCHHHEEEcCCCCEEEcccccceecccc------------------------------------------------
Confidence            99999999999999999999999998432210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                    .......+||..|+|||++..     ...+.++|||||||++|||++|+.
T Consensus       222 ------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~  271 (353)
T PLN00034        222 ------------------------------MDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRF  271 (353)
T ss_pred             ------------------------------cccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCC
Confidence                                          001123469999999999843     234678999999999999999999


Q ss_pred             CCCCCChHH---HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          396 PFKGENNEK---TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       396 Pf~~~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||......+   ....+.....  +.....      ...++++||.+||+.||++||++.    |+++||||.+.
T Consensus       272 pf~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~l~~li~~~l~~~P~~Rpt~~----ell~hp~~~~~  334 (353)
T PLN00034        272 PFGVGRQGDWASLMCAICMSQP--PEAPAT------ASREFRHFISCCLQREPAKRWSAM----QLLQHPFILRA  334 (353)
T ss_pred             CCCCCCCccHHHHHHHHhccCC--CCCCCc------cCHHHHHHHHHHccCChhhCcCHH----HHhcCcccccC
Confidence            997443222   2222222111  111111      123589999999999999999998    99999999875

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.3e-46  Score=366.82  Aligned_cols=264  Identities=26%  Similarity=0.330  Sum_probs=199.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeee-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFE-  159 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~-  159 (517)
                      ++|++++.||+|+||.||+|++...    .++.||+|++...... ........+|+.+++.+   +||||+++++++. 
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~----~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~   75 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKN----GGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV   75 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCC----CCeEEEEEEEecccCC-CCchHHHHHHHHHHHhhcccCCCCcceEEEEEec
Confidence            3799999999999999999998642    4578999998643211 11122344577666665   6999999999885 


Q ss_pred             ----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          160 ----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       160 ----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                          ....+|+||||++ ++|.+++.......++...                            ++.++.||+.||+||
T Consensus        76 ~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~----------------------------~~~i~~qi~~aL~~l  126 (290)
T cd07862          76 SRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTET----------------------------IKDMMFQLLRGLDFL  126 (290)
T ss_pred             ccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHH----------------------------HHHHHHHHHHHHHHH
Confidence                3456899999995 6999888765433333322                            236789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++.....                                           
T Consensus       127 H~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------  163 (290)
T cd07862         127 HSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-------------------------------------------  163 (290)
T ss_pred             HHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCC-------------------------------------------
Confidence            9999999999999999999999999999998432110                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .......||+.|+|||++.+..++.++|||||||++|||++|.+
T Consensus       164 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  207 (290)
T cd07862         164 ------------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP  207 (290)
T ss_pred             ------------------------------------cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCC
Confidence                                                01223468999999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCC----------------Cchh--HHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVS----------------SSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~----------------~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      ||.+.+..+.+..+............+                ....  ......+++||.+||+.||++||++.    |
T Consensus       208 ~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~----~  283 (290)
T cd07862         208 LFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY----S  283 (290)
T ss_pred             CcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHH----H
Confidence            999988877777775421110000000                0000  01223578999999999999999998    9


Q ss_pred             hhcCCCc
Q 010140          458 IKRHEFF  464 (517)
Q Consensus       458 ll~hp~f  464 (517)
                      +++||||
T Consensus       284 ~l~hp~f  290 (290)
T cd07862         284 ALSHPYF  290 (290)
T ss_pred             HhcCCCC
Confidence            9999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=5.2e-46  Score=374.45  Aligned_cols=270  Identities=24%  Similarity=0.289  Sum_probs=200.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC---
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS---  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~---  161 (517)
                      +|++.+.||+|+||.||+|+++.     +++.||||++...... .....++.+|+.+++.++||||+++++++...   
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   74 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTH-----TGEKVAIKKINDVFEH-VSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRR   74 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECC-----CCCEEEEEEechhhcc-chhHHHHHHHHHHHHhCCCCCEeeecceEeccCCC
Confidence            58999999999999999999886     6789999998743211 22334667899999999999999999988533   


Q ss_pred             --ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          162 --HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       162 --~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                        ..+|+||||| +++|.+++....  .++...                            ++.++.||+.||+|||++|
T Consensus        75 ~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~aL~~LH~~~  123 (338)
T cd07859          75 EFKDIYVVFELM-ESDLHQVIKAND--DLTPEH----------------------------HQFFLYQLLRALKYIHTAN  123 (338)
T ss_pred             CCceEEEEEecC-CCCHHHHHHhcc--cCCHHH----------------------------HHHHHHHHHHHHHHHHHCC
Confidence              3589999999 578988876542  233222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.......                                             
T Consensus       124 ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------  158 (338)
T cd07859         124 VFHRDLKPKNILANADCKLKICDFGLARVAFNDTP---------------------------------------------  158 (338)
T ss_pred             eecCCCCHHHeEECCCCcEEEccCccccccccccC---------------------------------------------
Confidence            99999999999999999999999999843211000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                    ........+||+.|+|||++.+  ..++.++|||||||++|||++|++||
T Consensus       159 ------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf  208 (338)
T cd07859         159 ------------------------------TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF  208 (338)
T ss_pred             ------------------------------ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCC
Confidence                                          0001123579999999999876  56899999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCC---------------------CCCCCCchh-HHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLTFP---------------------RIGVSSSKE-FEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p---------------------~~~~~~~~~-~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .+.+....+..+.......+                     ......... ......+.+||.+||+.||++||++.   
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~---  285 (338)
T cd07859         209 PGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAE---  285 (338)
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHH---
Confidence            87765433322211000000                     000000000 01123578999999999999999998   


Q ss_pred             HHhhcCCCcCCCCcc
Q 010140          456 VEIKRHEFFKGINWA  470 (517)
Q Consensus       456 ~ell~hp~f~~~~~~  470 (517)
                       |+++||||+++...
T Consensus       286 -e~l~hp~f~~~~~~  299 (338)
T cd07859         286 -EALADPYFKGLAKV  299 (338)
T ss_pred             -HHhcCchhhhcCcc
Confidence             99999999987653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=8.6e-45  Score=360.37  Aligned_cols=290  Identities=37%  Similarity=0.680  Sum_probs=226.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||++.++.     +++.||+|.+.............+..|+.+++.++||||+++++.+..+++
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKE-----TRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRH   75 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECC-----CCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCE
Confidence            479999999999999999999886     678899999987755444556677789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||++|++|.+++....  .+++...                            +.++.|++.||+|||++||+||
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~----------------------------~~~~~~i~~~l~~lH~~~i~H~  125 (305)
T cd05609          76 LCMVMEYVEGGDCATLLKNIG--ALPVDMA----------------------------RMYFAETVLALEYLHNYGIVHR  125 (305)
T ss_pred             EEEEEecCCCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcccc
Confidence            999999999999999986642  2222222                            3567899999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.+||+|||+++.........                       .                       
T Consensus       126 dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~-----------------------~-----------------------  159 (305)
T cd05609         126 DLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTN-----------------------L-----------------------  159 (305)
T ss_pred             CCchHHEEECCCCCEEEeeCCCccccCcCcccc-----------------------c-----------------------
Confidence            999999999999999999999884321000000                       0                       


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                            ...           ...............|+..|+|||.+.+..++.++|||||||++|||++|..||.+....
T Consensus       160 ------~~~-----------~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~  222 (305)
T cd05609         160 ------YEG-----------HIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE  222 (305)
T ss_pred             ------ccc-----------ccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                  000           000000000112345888999999999888999999999999999999999999988888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      +.+..+.......|......+      .++.+||.+||+.||++||++ ..+.++++||||...+|+.+......
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~------~~~~~li~~~l~~~P~~R~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~  290 (305)
T cd05609         223 ELFGQVISDDIEWPEGDEALP------ADAQDLISRLLRQNPLERLGT-GGAFEVKQHRFFLGLDWNGLLRQKAE  290 (305)
T ss_pred             HHHHHHHhcccCCCCccccCC------HHHHHHHHHHhccChhhccCc-cCHHHHHhCccccCCCHHHHhhcCCC
Confidence            877777766555544332222      248999999999999999997 34559999999999999877655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-47  Score=374.11  Aligned_cols=252  Identities=25%  Similarity=0.333  Sum_probs=205.9

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+.+..+.+.+++.||+|.||.||+|.++.      ...||+|.++...+    ..+.+.+|+.+|++|+|+|||+|+++
T Consensus       200 ~wei~r~~l~l~~~LG~G~FG~V~~g~~~~------~~~vavk~ik~~~m----~~~~f~~Ea~iMk~L~H~~lV~l~gV  269 (468)
T KOG0197|consen  200 PWEIPREELKLIRELGSGQFGEVWLGKWNG------STKVAVKTIKEGSM----SPEAFLREAQIMKKLRHEKLVKLYGV  269 (468)
T ss_pred             CeeecHHHHHHHHHhcCCccceEEEEEEcC------CCcccceEEecccc----ChhHHHHHHHHHHhCcccCeEEEEEE
Confidence            344555677889999999999999999986      34689999876532    23455679999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +..++.+||||||++.|+|.++|+...+..+.....                            ..|+.|||+|++||++
T Consensus       270 ~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~L----------------------------l~~a~qIaeGM~YLes  321 (468)
T KOG0197|consen  270 CTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQL----------------------------LDFAAQIAEGMAYLES  321 (468)
T ss_pred             EecCCceEEEEEecccCcHHHHhhhcCCCccchHHH----------------------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999998854444444332                            3789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +++|||||..+||||+.+..+||+|||+|+......-.                                          
T Consensus       322 ~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~------------------------------------------  359 (468)
T KOG0197|consen  322 KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYT------------------------------------------  359 (468)
T ss_pred             CCccchhhhhhheeeccCceEEEcccccccccCCCcee------------------------------------------
Confidence            99999999999999999999999999999733221110                                          


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                         ......-...|.|||.+....++.++|||||||+||||+| |+.|
T Consensus       360 -----------------------------------~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~p  404 (468)
T KOG0197|consen  360 -----------------------------------ASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVP  404 (468)
T ss_pred             -----------------------------------ecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCC
Confidence                                               0011123457999999999999999999999999999997 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+.+..+++..+.++.....+..++        ..+.+||..||..+|++|||++
T Consensus       405 y~~msn~ev~~~le~GyRlp~P~~CP--------~~vY~lM~~CW~~~P~~RPtF~  452 (468)
T KOG0197|consen  405 YPGMSNEEVLELLERGYRLPRPEGCP--------DEVYELMKSCWHEDPEDRPTFE  452 (468)
T ss_pred             CCCCCHHHHHHHHhccCcCCCCCCCC--------HHHHHHHHHHhhCCcccCCCHH
Confidence            99999999998888765433322222        2589999999999999999995

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.7e-45  Score=377.92  Aligned_cols=270  Identities=25%  Similarity=0.389  Sum_probs=205.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++++.||+|+||.||+|...+.   ..++.||+|.+....        ...+|+.+|+.++||||++++++|....
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~---~~~~~v~vK~~~~~~--------~~~~E~~il~~l~h~~iv~~~~~~~~~~  159 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGD---EQRKKVIVKAVTGGK--------TPGREIDILKTISHRAIINLIHAYRWKS  159 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCC---ccceeEEEEeccccc--------cHHHHHHHHHhcCCCCccceeeeEeeCC
Confidence            45799999999999999999986542   245789999986542        2345999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+|||++ +++|.+++...  ..+++...                            +.|+.||+.||.|||++||||
T Consensus       160 ~~~lv~e~~-~~~l~~~l~~~--~~l~~~~~----------------------------~~i~~ql~~aL~~LH~~givH  208 (392)
T PHA03207        160 TVCMVMPKY-KCDLFTYVDRS--GPLPLEQA----------------------------ITIQRRLLEALAYLHGRGIIH  208 (392)
T ss_pred             EEEEEehhc-CCCHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCccc
Confidence            999999999 57888887432  23333222                            377899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.......                                                
T Consensus       209 rDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~------------------------------------------------  240 (392)
T PHA03207        209 RDVKTENIFLDEPENAVLGDFGAACKLDAHPD------------------------------------------------  240 (392)
T ss_pred             cCCCHHHEEEcCCCCEEEccCccccccCcccc------------------------------------------------
Confidence            99999999999999999999999843321000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........||+.|+|||++.+..++.++|||||||++|||++|..||.+...
T Consensus       241 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~  292 (392)
T PHA03207        241 ----------------------------TPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQV  292 (392)
T ss_pred             ----------------------------cccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCC
Confidence                                        0112245799999999999998999999999999999999999999987542


Q ss_pred             ---HHHHHHHhc----CCCCCCCCCC------------------CCc---hhHHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          403 ---EKTLINILK----KPLTFPRIGV------------------SSS---KEFEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       403 ---~~~~~~i~~----~~~~~p~~~~------------------~~~---~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                         ...+..+..    ....++....                  ...   .......++++||.+||..||++||++.  
T Consensus       293 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~--  370 (392)
T PHA03207        293 KSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQ--  370 (392)
T ss_pred             CCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHH--
Confidence               222222222    1111111000                  000   0011234688999999999999999998  


Q ss_pred             hHHhhcCCCcCCCCcccccC
Q 010140          455 SVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       455 ~~ell~hp~f~~~~~~~~~~  474 (517)
                        |+|+||||...+|+.++-
T Consensus       371 --e~l~~p~f~~~~~~~~~~  388 (392)
T PHA03207        371 --DILSLPLFTKEPINLLNI  388 (392)
T ss_pred             --HHhhCchhhccchhhhcC
Confidence              999999999999987654

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=3.1e-45  Score=368.90  Aligned_cols=289  Identities=20%  Similarity=0.229  Sum_probs=200.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +++..++|++.+.||+|+||.||+|.+.......+++.||||++.....  ......+..|+.+|..+ +||||++++++
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~niv~~~~~   79 (338)
T cd05102           2 WEFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT--ASEHKALMSELKILIHIGNHLNVVNLLGA   79 (338)
T ss_pred             cccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc--hHHHHHHHHHHHHHHHhccCcceeeEEeE
Confidence            4567789999999999999999999875432223567899999875422  12345677799999999 89999999998


Q ss_pred             eec-CceeEEEEEecCCCchhHHHHhCCCCccCccch--h--hhhh------------------hhh-hhhhcC------
Q 010140          158 FEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA--K--FVFF------------------LLF-FFFYNN------  207 (517)
Q Consensus       158 ~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~--~--~~~~------------------~l~-~~~~~~------  207 (517)
                      +.. ++.+|+|||||++|+|.+++...........+.  .  ..+.                  .++ .+....      
T Consensus        80 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
T cd05102          80 CTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNP  159 (338)
T ss_pred             ecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccccc
Confidence            865 456899999999999999987642110000000  0  0000                  000 000000      


Q ss_pred             ---CccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHH
Q 010140          208 ---LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEA  284 (517)
Q Consensus       208 ---~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~  284 (517)
                         .............+..|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......          
T Consensus       160 ~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~----------  229 (338)
T cd05102         160 PQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD----------  229 (338)
T ss_pred             chhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcc----------
Confidence               0000112233445667899999999999999999999999999999999999999999853221000          


Q ss_pred             HhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcc
Q 010140          285 IEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYL  364 (517)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~  364 (517)
                                                                                        ........+++.|+
T Consensus       230 ------------------------------------------------------------------~~~~~~~~~~~~y~  243 (338)
T cd05102         230 ------------------------------------------------------------------YVRKGSARLPLKWM  243 (338)
T ss_pred             ------------------------------------------------------------------hhcccCCCCCcccc
Confidence                                                                              00112234678899


Q ss_pred             cchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccC
Q 010140          365 APEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       365 APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~  443 (517)
                      |||++.+..++.++|||||||++|||++ |..||.+....+.+............ ...      ....+.+||.+||+.
T Consensus       244 aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~l~~li~~cl~~  316 (338)
T cd05102         244 APESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRA-PEN------ATPEIYRIMLACWQG  316 (338)
T ss_pred             CcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCC-CCC------CCHHHHHHHHHHccC
Confidence            9999999889999999999999999997 99999886654444333332211111 111      123589999999999


Q ss_pred             CcccccCCC
Q 010140          444 NPKKRIGSL  452 (517)
Q Consensus       444 dP~~R~t~~  452 (517)
                      ||++||++.
T Consensus       317 dp~~RPs~~  325 (338)
T cd05102         317 DPKERPTFS  325 (338)
T ss_pred             ChhhCcCHH
Confidence            999999997

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=6.3e-45  Score=369.74  Aligned_cols=262  Identities=28%  Similarity=0.422  Sum_probs=197.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|++..     +++.||+|++...... ......+.+|+.+++.++||||+++++++....
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   93 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTV-----LGINVAVKKLSRPFQN-QTHAKRAYRELVLLKCVNHKNIISLLNVFTPQK   93 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcC-----CCceeEEEEecccccc-hhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC
Confidence            4789999999999999999999876     6789999998754221 233455667999999999999999999986543


Q ss_pred             ------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 ------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                            .+|+||||++ ++|.+.+..    .+....                            ++.++.||+.||+|||
T Consensus        94 ~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~----------------------------~~~~~~qi~~~L~~LH  140 (359)
T cd07876          94 SLEEFQDVYLVMELMD-ANLCQVIHM----ELDHER----------------------------MSYLLYQMLCGIKHLH  140 (359)
T ss_pred             CccccceeEEEEeCCC-cCHHHHHhc----cCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                  5799999995 466665532    122211                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.+|.+||+|||+++....                                             
T Consensus       141 ~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~---------------------------------------------  175 (359)
T cd07876         141 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT---------------------------------------------  175 (359)
T ss_pred             hCCcccCCCCHHHEEECCCCCEEEecCCCcccccc---------------------------------------------
Confidence            99999999999999999999999999999842110                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.|
T Consensus       176 ----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~p  221 (359)
T cd07876         176 ----------------------------------NFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVI  221 (359)
T ss_pred             ----------------------------------CccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence                                              0011234689999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcC----------------------CCCCCCCC---------CCCc--hhHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKK----------------------PLTFPRIG---------VSSS--KEFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~----------------------~~~~p~~~---------~~~~--~~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+....+..+...                      ....+...         ....  .......++++||.+||+.
T Consensus       222 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~  301 (359)
T cd07876         222 FQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVI  301 (359)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhcc
Confidence            9987654443332211                      11111000         0000  0001123589999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||++|||+.    |+|+||||..
T Consensus       302 dP~~R~t~~----e~l~hp~~~~  320 (359)
T cd07876         302 DPDKRISVD----EALRHPYITV  320 (359)
T ss_pred             CcccCCCHH----HHhcCchhhh
Confidence            999999998    9999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=8.5e-45  Score=364.74  Aligned_cols=266  Identities=25%  Similarity=0.345  Sum_probs=203.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.++||+|+||.||+|++..     ++..+|+|++.....  ......+.+|+.+++.++||||++++++|..
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   74 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKP-----SGLIMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGFYGAFYS   74 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECC-----CCcEEEEEEeecccC--HHHHHHHHHHHHHHHHCCCCcccceeEEEEE
Confidence            345789999999999999999999886     678899998865421  1234567779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-C
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-G  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~  239 (517)
                      ++.+|+||||++||+|.+++....  .++...                            ++.++.||+.||.|||++ +
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~~l~~~l~~lH~~~~  124 (333)
T cd06650          75 DGEISICMEHMDGGSLDQVLKKAG--RIPEQI----------------------------LGKVSIAVIKGLTYLREKHK  124 (333)
T ss_pred             CCEEEEEEecCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887542  222221                            236788999999999985 7


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||++.....                                                
T Consensus       125 ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~------------------------------------------------  156 (333)
T cd06650         125 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLID------------------------------------------------  156 (333)
T ss_pred             EEecCCChhhEEEcCCCCEEEeeCCcchhhhh------------------------------------------------
Confidence            99999999999999999999999999732210                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      .......||+.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       157 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         157 --------------------------------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             --------------------------------hccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence                                            001234689999999999988899999999999999999999999987


Q ss_pred             CChHHHHHHHhc---CCCCC------------------CCCCC----------------CCchhHHhhhhHHHHHHHhcc
Q 010140          400 ENNEKTLINILK---KPLTF------------------PRIGV----------------SSSKEFEEVVKLQDLISKLLV  442 (517)
Q Consensus       400 ~~~~~~~~~i~~---~~~~~------------------p~~~~----------------~~~~~~~~~~~l~dLi~~~L~  442 (517)
                      .........+..   +....                  |....                ..........++++||.+||+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  284 (333)
T cd06650         205 PDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLI  284 (333)
T ss_pred             cchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhcc
Confidence            654333221110   00000                  00000                000000012358899999999


Q ss_pred             CCcccccCCCCChHHhhcCCCcCCC
Q 010140          443 KNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       443 ~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +||++||++.    |+++||||+..
T Consensus       285 ~~P~~Rpt~~----ell~h~~~~~~  305 (333)
T cd06650         285 KNPAERADLK----QLMVHAFIKRS  305 (333)
T ss_pred             CCcccCcCHH----HHhhCHHHhcC
Confidence            9999999998    99999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.2e-44  Score=368.38  Aligned_cols=262  Identities=27%  Similarity=0.386  Sum_probs=200.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++.+.||+|+||.||+|.+..     .++.||||++...... ......+.+|+.+++.++||||+++++++... 
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~   96 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAI-----LERNVAIKKLSRPFQN-QTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQK   96 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECC-----CCcEEEEEEeCccccC-chhHHHHHHHHHHHHhcCCCCccccceeecccc
Confidence            4789999999999999999999876     6788999998754221 22345566799999999999999999988543 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ..+|+||||++ ++|...+...    +...                            .++.++.||+.||+|||
T Consensus        97 ~~~~~~~~~lv~e~~~-~~l~~~~~~~----~~~~----------------------------~~~~~~~qi~~aL~~LH  143 (364)
T cd07875          97 SLEEFQDVYIVMELMD-ANLCQVIQME----LDHE----------------------------RMSYLLYQMLCGIKHLH  143 (364)
T ss_pred             cccccCeEEEEEeCCC-CCHHHHHHhc----CCHH----------------------------HHHHHHHHHHHHHHHHh
Confidence                 35799999995 5777666431    1111                            12367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       144 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~---------------------------------------------  178 (364)
T cd07875         144 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT---------------------------------------------  178 (364)
T ss_pred             hCCeecCCCCHHHEEECCCCcEEEEeCCCccccCC---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.|
T Consensus       179 ----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~p  224 (364)
T cd07875         179 ----------------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL  224 (364)
T ss_pred             ----------------------------------CCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCC
Confidence                                              0011234689999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCC-------------------CC------------CCCCCch--hHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKKPLTF-------------------PR------------IGVSSSK--EFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~-------------------p~------------~~~~~~~--~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+..+.+.+++......                   |.            .......  ......++++||.+||+.
T Consensus       225 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~  304 (364)
T cd07875         225 FPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI  304 (364)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCc
Confidence            99888766666554321110                   00            0000000  001123588999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||.+|||+.    |+|+||||..
T Consensus       305 dP~~R~t~~----e~L~hp~~~~  323 (364)
T cd07875         305 DASKRISVD----EALQHPYINV  323 (364)
T ss_pred             CcccCCCHH----HHhcCccccc
Confidence            999999998    9999999973

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2e-44  Score=352.69  Aligned_cols=262  Identities=36%  Similarity=0.591  Sum_probs=207.7

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||+|+||+||+|.++.     +++.||+|++.+...........+..|+.+|+.++||||+++++++...+..|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKA-----TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcC-----CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecC
Confidence            6999999999999876     67889999998765444444556677999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      ++++|.+++.......+++...                            +.++.||+.||.|||++|++||||+|+||+
T Consensus        76 ~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~~ql~~~l~~lH~~~i~H~di~p~Nil  127 (277)
T cd05577          76 NGGDLKYHIYNVGEPGFPEARA----------------------------IFYAAQIICGLEHLHQRRIVYRDLKPENVL  127 (277)
T ss_pred             CCCcHHHHHHHcCcCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCcccCCCCHHHEE
Confidence            9999999887654333333222                            367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.++|+|||++.....                                                            
T Consensus       128 ~~~~~~~~l~dfg~~~~~~~------------------------------------------------------------  147 (277)
T cd05577         128 LDDHGNVRISDLGLAVELKG------------------------------------------------------------  147 (277)
T ss_pred             ECCCCCEEEccCcchhhhcc------------------------------------------------------------
Confidence            99999999999998733210                                                            


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH----HHHH
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE----KTLI  407 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~----~~~~  407 (517)
                                         ........|+..|+|||++.+..++.++|||||||++|+|++|+.||......    ....
T Consensus       148 -------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  208 (277)
T cd05577         148 -------------------GKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKR  208 (277)
T ss_pred             -------------------CCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHh
Confidence                               00011235788999999998888999999999999999999999999876542    2222


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccccC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~~  474 (517)
                      .+.......+..         ....+.++|.+||+.||.+||+..+ .+.++++||||+.++|..+..
T Consensus       209 ~~~~~~~~~~~~---------~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~~~~~~~  267 (277)
T cd05577         209 RTLEMAVEYPDK---------FSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRLEA  267 (277)
T ss_pred             ccccccccCCcc---------CCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcCChhhhhc
Confidence            222222222211         1235899999999999999998876 677999999999999987743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=5.9e-45  Score=362.25  Aligned_cols=266  Identities=26%  Similarity=0.375  Sum_probs=202.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|.+++.||+|+||.||+|+++.     +++.||+|.++.....  .....+.+|+.+++.++||||+++++++..++
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   77 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKL-----TENLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIVHTDK   77 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecC-----CCCeEEEEEeeccccC--CcchhHHHHHHHHHhCCCCCcceEEEEEeeCC
Confidence            4789999999999999999999876     6788999998754221  22234556999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++ ++|.+++.... ..+...                            .++.++.||+.||+|||++||+|
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~----------------------------~~~~~~~qi~~aL~~lH~~~ivH  127 (309)
T cd07872          78 SLTLVFEYLD-KDLKQYMDDCG-NIMSMH----------------------------NVKIFLYQILRGLAYCHRRKVLH  127 (309)
T ss_pred             eEEEEEeCCC-CCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeec
Confidence            9999999996 58888775532 112222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++......                                                 
T Consensus       128 ~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~-------------------------------------------------  158 (309)
T cd07872         128 RDLKPQNLLINERGELKLADFGLARAKSVPT-------------------------------------------------  158 (309)
T ss_pred             CCCCHHHEEECCCCCEEECccccceecCCCc-------------------------------------------------
Confidence            9999999999999999999999984321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.+
T Consensus       159 -----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~  209 (309)
T cd07872         159 -----------------------------KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGST  209 (309)
T ss_pred             -----------------------------cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         001123578999999998764 58999999999999999999999999887


Q ss_pred             hHHHHHHHhcCCC-------------------CCCCCCCCC--chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPL-------------------TFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~-------------------~~p~~~~~~--~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+.+..+.....                   .++......  ........++++||.+||+.||.+|||+.    |+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~----e~l~  285 (309)
T cd07872         210 VEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAE----EAMK  285 (309)
T ss_pred             hHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHH----HHhc
Confidence            6655544432110                   011100000  00001234688999999999999999998    9999


Q ss_pred             CCCcCCC
Q 010140          461 HEFFKGI  467 (517)
Q Consensus       461 hp~f~~~  467 (517)
                      ||||+.+
T Consensus       286 h~~~~~~  292 (309)
T cd07872         286 HAYFRSL  292 (309)
T ss_pred             Chhhhhc
Confidence            9999865

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=8.7e-45  Score=381.37  Aligned_cols=262  Identities=26%  Similarity=0.353  Sum_probs=209.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|.+.+.||+|+||.||+|.....    .+..||+|.+.....   .....+.+|+.+|+.++|||||+++++|..++.
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~----~~~~vv~K~~~~~~~---~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~  139 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSD----PKEKVVAKFVMLNDE---RQAAYARSELHCLAACDHFGIVKHFDDFKSDDK  139 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCC----CCeEEEEEEcccCCH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCE
Confidence            4599999999999999999987652    257788887654322   233456679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +||||||++||+|.+++........+..+.                          .++.++.||+.||+|||++||+||
T Consensus       140 ~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~--------------------------~~~~i~~qi~~aL~~lH~~~ivHr  193 (478)
T PTZ00267        140 LLLIMEYGSGGDLNKQIKQRLKEHLPFQEY--------------------------EVGLLFYQIVLALDEVHSRKMMHR  193 (478)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCCCCHH--------------------------HHHHHHHHHHHHHHHHHhCCEEEC
Confidence            999999999999998876532222222211                          223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++.+.....                                                 
T Consensus       194 Dlkp~NIll~~~~~~kL~DFgla~~~~~~~~-------------------------------------------------  224 (478)
T PTZ00267        194 DLKSANIFLMPTGIIKLGDFGFSKQYSDSVS-------------------------------------------------  224 (478)
T ss_pred             CcCHHhEEECCCCcEEEEeCcCceecCCccc-------------------------------------------------
Confidence            9999999999999999999999854321000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       225 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~  277 (478)
T PTZ00267        225 ---------------------------LDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR  277 (478)
T ss_pred             ---------------------------cccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       01123457999999999999988999999999999999999999999998888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +.+..+..+......  ..      ...++.+||.+||..||++||++.    +++.|||++.
T Consensus       278 ~~~~~~~~~~~~~~~--~~------~s~~~~~li~~~L~~dP~~Rps~~----~~l~~~~~~~  328 (478)
T PTZ00267        278 EIMQQVLYGKYDPFP--CP------VSSGMKALLDPLLSKNPALRPTTQ----QLLHTEFLKY  328 (478)
T ss_pred             HHHHHHHhCCCCCCC--cc------CCHHHHHHHHHHhccChhhCcCHH----HHHhCHHHHH
Confidence            888877765433111  11      112589999999999999999998    9999999864

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=5.2e-45  Score=372.07  Aligned_cols=267  Identities=23%  Similarity=0.294  Sum_probs=202.6

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc--
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH--  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--  162 (517)
                      +|++++.||+|+||.||+|.+..     +++.||||.+...... .....++.+|+.+|+.++||||+++++++...+  
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   74 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPR-----DGKRVALKKMPNVFQN-LVSCKRVFRELKMLCFFKHDNVLSALDILQPPHID   74 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECC-----CCCEEEEEeccccccc-hHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCcc
Confidence            58899999999999999999876     6788999998643211 223456778999999999999999999998776  


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                         .+|+||||+. ++|.+++...  ..+...                            .++.++.||+.||+|||++|
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~~~~~--~~l~~~----------------------------~~~~~~~qi~~aL~~LH~~~  123 (372)
T cd07853          75 PFEEIYVVTELMQ-SDLHKIIVSP--QPLSSD----------------------------HVKVFLYQILRGLKYLHSAG  123 (372)
T ss_pred             ccceEEEEeeccc-cCHHHHHhcC--CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCC
Confidence               7899999995 6888776543  222222                            23467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++......                                              
T Consensus       124 ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~----------------------------------------------  157 (372)
T cd07853         124 ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDE----------------------------------------------  157 (372)
T ss_pred             eeCCCCChHHEEECCCCCEEeccccceeecccCc----------------------------------------------
Confidence            9999999999999999999999999984321100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........||+.|+|||++.+.. ++.++|||||||++|||++|+.||.
T Consensus       158 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         158 -------------------------------SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             -------------------------------cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCC
Confidence                                           00112336899999999998754 7999999999999999999999999


Q ss_pred             CCChHHHHHHHhcC-----------------------CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          399 GENNEKTLINILKK-----------------------PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       399 ~~~~~~~~~~i~~~-----------------------~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      +.+..+.+..+...                       ....+..............++.+||.+||+.||++|||+.   
T Consensus       207 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~---  283 (372)
T cd07853         207 AQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAA---  283 (372)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHH---
Confidence            88776655544321                       1111100000000001133589999999999999999998   


Q ss_pred             HHhhcCCCcCCCCc
Q 010140          456 VEIKRHEFFKGINW  469 (517)
Q Consensus       456 ~ell~hp~f~~~~~  469 (517)
                       |+++||||++..+
T Consensus       284 -e~l~hp~~~~~~~  296 (372)
T cd07853         284 -DALAHPYLDEGRL  296 (372)
T ss_pred             -HHhcCHhhCCCcc
Confidence             9999999998654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=8.5e-45  Score=381.82  Aligned_cols=266  Identities=26%  Similarity=0.373  Sum_probs=210.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||+||+|++..     +++.||||++...... ......+.+|+.++..++|+||+++++.+..
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~-----~g~~vAvK~i~~~~~~-~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~  102 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVS-----DGEPFAVKVVDMEGMS-EADKNRAQAEVCCLLNCDFFSIVKCHEDFAK  102 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcC-----CCCEEEEEEEecccCC-HHHHHHHHHHHHHHhcCCCCcEEEeecceec
Confidence            345799999999999999999999876     6789999998754322 2334566779999999999999999887753


Q ss_pred             Cc--------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          161 SH--------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       161 ~~--------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      .+        .+++||||+++|+|.+++.........+.+                          ..++.++.||+.||
T Consensus       103 ~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e--------------------------~~~~~i~~qll~aL  156 (496)
T PTZ00283        103 KDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFRE--------------------------HEAGLLFIQVLLAV  156 (496)
T ss_pred             ccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCH--------------------------HHHHHHHHHHHHHH
Confidence            22        378999999999999988654222111111                          12246789999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      +|||++||+||||||+|||++.++.+||+|||+++.+....                                       
T Consensus       157 ~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~---------------------------------------  197 (496)
T PTZ00283        157 HHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATV---------------------------------------  197 (496)
T ss_pred             HHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccc---------------------------------------
Confidence            99999999999999999999999999999999985432100                                       


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                           ........+||+.|+|||++.+..++.++|||||||++|||++
T Consensus       198 -------------------------------------~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLlt  240 (496)
T PTZ00283        198 -------------------------------------SDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLT  240 (496)
T ss_pred             -------------------------------------cccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence                                                 0011234579999999999999889999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |+.||.+.+..+.+..+..+......  ..      ...++.+||.+||+.||.+||++.    ++++|||++.
T Consensus       241 G~~Pf~~~~~~~~~~~~~~~~~~~~~--~~------~~~~l~~li~~~L~~dP~~RPs~~----ell~~p~~~~  302 (496)
T PTZ00283        241 LKRPFDGENMEEVMHKTLAGRYDPLP--PS------ISPEMQEIVTALLSSDPKRRPSSS----KLLNMPICKL  302 (496)
T ss_pred             CCCCCCCCCHHHHHHHHhcCCCCCCC--CC------CCHHHHHHHHHHcccChhhCcCHH----HHHhCHHHHH
Confidence            99999998888877777765432111  11      123589999999999999999998    9999999875

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=7.7e-45  Score=357.46  Aligned_cols=262  Identities=28%  Similarity=0.374  Sum_probs=196.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeeec-
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFEA-  160 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~-  160 (517)
                      +|++.+.||+|+||+||+|+++.     +++.||+|.++..... ........+|+.+++.+   +||||+++++++.. 
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~-----~~~~~aiK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~   74 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPH-----SGHFVALKSVRVQTNE-DGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATS   74 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECC-----CCcEEEEEEeccCcCC-CCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccc
Confidence            58999999999999999999987     6789999998653211 11122334566666655   79999999998864 


Q ss_pred             ----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          161 ----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       161 ----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                          ....++||||++ ++|..++.......++....                            +.++.||+.||.|||
T Consensus        75 ~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~al~~lH  125 (288)
T cd07863          75 RTDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETI----------------------------KDLMRQFLRGLDFLH  125 (288)
T ss_pred             cCCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence                346899999996 58988887654333333332                            367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++.....                                            
T Consensus       126 ~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~--------------------------------------------  161 (288)
T cd07863         126 ANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQ--------------------------------------------  161 (288)
T ss_pred             hCCeecCCCCHHHEEECCCCCEEECccCccccccCc--------------------------------------------
Confidence            999999999999999999999999999998432100                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         .......||+.|+|||++.+..++.++|||||||++|+|++|.+|
T Consensus       162 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~  206 (288)
T cd07863         162 -----------------------------------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL  206 (288)
T ss_pred             -----------------------------------ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcC
Confidence                                               001223689999999999988899999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCC-----CCCCCC-----------CCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHh
Q 010140          397 FKGENNEKTLINILKKP-----LTFPRI-----------GVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI  458 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~-----~~~p~~-----------~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~el  458 (517)
                      |.+....+.+.++....     ..++..           .......  ......+.+||.+||+.||++||++.    |+
T Consensus       207 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~----~~  282 (288)
T cd07863         207 FCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAF----RA  282 (288)
T ss_pred             cCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHH----HH
Confidence            98887766665554311     011100           0000000  01223578999999999999999998    99


Q ss_pred             hcCCCc
Q 010140          459 KRHEFF  464 (517)
Q Consensus       459 l~hp~f  464 (517)
                      +.||||
T Consensus       283 l~hp~f  288 (288)
T cd07863         283 LQHPFF  288 (288)
T ss_pred             hcCCCC
Confidence            999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-45  Score=340.17  Aligned_cols=263  Identities=30%  Similarity=0.442  Sum_probs=214.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+|+.|--|....     ++..||||++.+..   .....++.+|++++..+ .|+||+.|+++|+++..+||||
T Consensus        84 e~LGeGAyasVqtcv~i~-----t~~EYAVKiidKq~---gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVf  155 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQ-----TGKEYAVKIIDKQP---GHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVF  155 (463)
T ss_pred             HHhcCccceeeeeeeeec-----cchhhhhhhhhcCC---chHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEE
Confidence            579999999999999887     67889999998763   24556788899999999 5999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      |-+.||.|...|+++  ..+.+.++.                            .++++|+.||.|||.+||.||||||+
T Consensus       156 EKm~GGplLshI~~~--~~F~E~EAs----------------------------~vvkdia~aLdFlH~kgIAHRDlKPE  205 (463)
T KOG0607|consen  156 EKMRGGPLLSHIQKR--KHFNEREAS----------------------------RVVKDIASALDFLHTKGIAHRDLKPE  205 (463)
T ss_pred             ecccCchHHHHHHHh--hhccHHHHH----------------------------HHHHHHHHHHHHHhhcCcccccCCcc
Confidence            999999999998876  445555554                            66799999999999999999999999


Q ss_pred             ceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          249 NVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       249 NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      |||.....   -||||||.+..-+....                     .|+                            
T Consensus       206 NiLC~~pn~vsPvKiCDfDLgSg~k~~~---------------------~~s----------------------------  236 (463)
T KOG0607|consen  206 NILCESPNKVSPVKICDFDLGSGIKLNN---------------------DCS----------------------------  236 (463)
T ss_pred             ceeecCCCCcCceeeeccccccccccCC---------------------CCC----------------------------
Confidence            99997554   48999999873221100                     000                            


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---C--CCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---G--QGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~--~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                            ........+.+|+..|||||+..   +  ..|+.++|.||||||||-|+.|.+||.|.
T Consensus       237 ----------------------pastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  237 ----------------------PASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             ----------------------CCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence                                  00122345678999999999863   3  34899999999999999999999999763


Q ss_pred             C---------------hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          401 N---------------NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       401 ~---------------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      -               ...++..|..+.+.||...+..     ++.+.+|||..+|..|+.+|.++.    ++++|||++
T Consensus       295 Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWah-----IS~eakdlisnLlvrda~~rlsa~----~vlnhPw~~  365 (463)
T KOG0607|consen  295 CGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAH-----ISSEAKDLISNLLVRDAKQRLSAA----QVLNHPWVQ  365 (463)
T ss_pred             cCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHH-----hhHHHHHHHHHHHhccHHhhhhhh----hccCCcccc
Confidence            1               2467888999999999765443     344689999999999999999998    999999999


Q ss_pred             CCCcc
Q 010140          466 GINWA  470 (517)
Q Consensus       466 ~~~~~  470 (517)
                      .+..+
T Consensus       366 ~~~~e  370 (463)
T KOG0607|consen  366 RCAPE  370 (463)
T ss_pred             ccchh
Confidence            87655

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-45  Score=339.18  Aligned_cols=256  Identities=29%  Similarity=0.429  Sum_probs=213.8

Q ss_pred             CCCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           83 LDHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      +++|.+- ++||-|-.|.|..|.++.     +++.+|+|++....        ...+|+++.-.. .|||||.++++|++
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~-----T~ekfALKvL~Ds~--------KARrEVeLHw~~s~h~~iV~IidVyeN  126 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKR-----TQEKFALKVLLDSP--------KARREVELHWMASGHPHIVSIIDVYEN  126 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEecc-----chhhhHHHHHhcCH--------HHHhHhhhhhhhcCCCceEEeehhhhh
Confidence            4677765 679999999999999998     78999999986542        223477766555 69999999999865


Q ss_pred             ----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          161 ----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       161 ----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                          ...+.+|||.++||+|+..++.++...+++.++.                            .|++||..||.|||
T Consensus       127 s~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~----------------------------eI~~qI~~Av~~lH  178 (400)
T KOG0604|consen  127 SYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREAS----------------------------EIMKQIGLAVRYLH  178 (400)
T ss_pred             hccCceeeEeeeecccchHHHHHHHHcccccchHHHHH----------------------------HHHHHHHHHHHHHH
Confidence                4567899999999999999999887778877766                            67899999999999


Q ss_pred             hcCceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      +.+|.||||||||+|...   |..+||+|||+|+.-..                                          
T Consensus       179 ~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~------------------------------------------  216 (400)
T KOG0604|consen  179 SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE------------------------------------------  216 (400)
T ss_pred             hcchhhccCChhheeeecCCCCcceEecccccccccCC------------------------------------------
Confidence            999999999999999964   45799999999953211                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                           .....+.|-||+|.|||++....|+..+|+||+||++|-|++|
T Consensus       217 -------------------------------------~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCG  259 (400)
T KOG0604|consen  217 -------------------------------------PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG  259 (400)
T ss_pred             -------------------------------------CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcC
Confidence                                                 1123456889999999999999999999999999999999999


Q ss_pred             CCCCCCCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          394 TTPFKGEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       394 ~~Pf~~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+||....    ...+..+|..+.+.||...+..     .+...+|+|++||..+|.+|+|+.    +++.|||+.+-
T Consensus       260 yPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~-----VSe~aKdlIR~LLkt~PteRlTI~----~~m~hpwi~~~  328 (400)
T KOG0604|consen  260 YPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSC-----VSEAAKDLIRKLLKTEPTERLTIE----EVMDHPWINQY  328 (400)
T ss_pred             CCcccccCCccCChhHHhHhhccCccCCChhHhH-----HHHHHHHHHHHHhcCCchhheeHH----HhhcCchhccc
Confidence            99998653    2456778889999998655443     344789999999999999999998    99999999764

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.7e-44  Score=364.56  Aligned_cols=258  Identities=22%  Similarity=0.359  Sum_probs=193.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++++.||+|+||.||+|++..     +++.||+|+..+..         ...|+.+++.++||||+++++++....
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~valK~~~~~~---------~~~E~~~l~~l~h~~iv~~~~~~~~~~  130 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPG-----QPDPVVLKIGQKGT---------TLIEAMLLQNVNHPSVIRMKDTLVSGA  130 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECC-----CCceEEEEeCCccc---------cHHHHHHHHhCCCCCCcChhheEEeCC
Confidence            3579999999999999999999876     56789999865432         234899999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+ .++|..++.... ..+++..                            ++.|+.||+.||.|||++||||
T Consensus       131 ~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~~ivH  180 (357)
T PHA03209        131 ITCMVLPHY-SSDLYTYLTKRS-RPLPIDQ----------------------------ALIIEKQILEGLRYLHAQRIIH  180 (357)
T ss_pred             eeEEEEEcc-CCcHHHHHHhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeec
Confidence            999999999 568888876532 2232222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++....                                                   
T Consensus       181 rDlkp~Nill~~~~~~kl~DfG~a~~~~~---------------------------------------------------  209 (357)
T PHA03209        181 RDVKTENIFINDVDQVCIGDLGAAQFPVV---------------------------------------------------  209 (357)
T ss_pred             CCCCHHHEEECCCCCEEEecCcccccccc---------------------------------------------------
Confidence            99999999999999999999998732110                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC-CCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP-FKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P-f~~~~  401 (517)
                                                  ........||+.|+|||++.+..++.++|||||||++|||+++..| |....
T Consensus       210 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~  261 (357)
T PHA03209        210 ----------------------------APAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPP  261 (357)
T ss_pred             ----------------------------CcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCC
Confidence                                        0011234689999999999998999999999999999999986544 44321


Q ss_pred             h---------HHHHHHHhcC----CCCCCCCCC---------------------CCchhHHhhhhHHHHHHHhccCCccc
Q 010140          402 N---------EKTLINILKK----PLTFPRIGV---------------------SSSKEFEEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       402 ~---------~~~~~~i~~~----~~~~p~~~~---------------------~~~~~~~~~~~l~dLi~~~L~~dP~~  447 (517)
                      .         ...+..+...    +..++....                     ..........++.+||.+||+.||.+
T Consensus       262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~  341 (357)
T PHA03209        262 STPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAM  341 (357)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCccc
Confidence            1         1112222211    111110000                     00001112335778999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCC
Q 010140          448 RIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~  467 (517)
                      |||+.    |+|+||||+.+
T Consensus       342 Rpta~----e~l~hp~f~~~  357 (357)
T PHA03209        342 RPSAE----EILNYPMFAQL  357 (357)
T ss_pred             CcCHH----HHhcCchhccC
Confidence            99998    99999999864

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=8.6e-45  Score=363.58  Aligned_cols=258  Identities=30%  Similarity=0.491  Sum_probs=224.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+.|.+++.||+|.|+.|.+|++..     ++..||||++.+........ ..+.+|+.+|+.|+|||||+++.+.+.
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~-----t~~~VaiK~idkt~ln~~~~-~k~~rev~imk~l~HPnIvkl~~v~~t  126 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHIL-----TGTEVAIKIIDKTQLNPSKR-QKLGREVDIMKSLNHPNIVKLFSVIET  126 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecC-----CCceEEEEEehhcccChHHH-HHHHHHHHHHHhcCCcceeeeeeeeee
Confidence            345789999999999999999999987     67889999999887664433 347789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+|+||||+.+|++++++.++..  .....+                            +.+..|++.|++|||+++|
T Consensus       127 ~~~lylV~eya~~ge~~~yl~~~gr--~~e~~a----------------------------r~~F~q~vsaveYcH~k~i  176 (596)
T KOG0586|consen  127 EATLYLVMEYASGGELFDYLVKHGR--MKEKEA----------------------------RAKFRQIVSAVEYCHSKNI  176 (596)
T ss_pred             cceeEEEEEeccCchhHHHHHhccc--chhhhh----------------------------hhhhHHHHHHHHHHhhcce
Confidence            9999999999999999999988743  222333                            3556899999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||++||||+.+.++||+|||++..+..                                                 
T Consensus       177 vHrdLk~eNilL~~~mnikIaDfgfS~~~~~-------------------------------------------------  207 (596)
T KOG0586|consen  177 VHRDLKAENILLDENMNIKIADFGFSTFFDY-------------------------------------------------  207 (596)
T ss_pred             eccccchhhcccccccceeeeccccceeecc-------------------------------------------------
Confidence            9999999999999999999999999855432                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    .....++||++.|.|||++.|..| ++.+|+||+|+++|.|+.|..||++
T Consensus       208 ------------------------------~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG  257 (596)
T KOG0586|consen  208 ------------------------------GLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG  257 (596)
T ss_pred             ------------------------------cccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC
Confidence                                          223457799999999999999987 7899999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+-.+...+.+.+.+..|.....         ++.+||+++|..+|.+|++..    ++..|.|...
T Consensus       258 ~~lk~Lr~rvl~gk~rIp~~ms~---------dce~lLrk~lvl~Pskr~~~d----qim~~~W~n~  311 (596)
T KOG0586|consen  258 QNLKELRPRVLRGKYRIPFYMSC---------DCEDLLRKFLVLNPSKRGPCD----QIMKDRWRND  311 (596)
T ss_pred             cccccccchheeeeecccceeec---------hhHHHHHHhhccCccccCCHH----Hhhhhcccch
Confidence            99888888888887777655443         488999999999999999998    9999999864

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=4.8e-44  Score=352.01  Aligned_cols=284  Identities=22%  Similarity=0.258  Sum_probs=213.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++.+.||+|+||.||+|..++...+.....||+|.+......  .....+..|+.+++.++||||+++++++.
T Consensus         2 ~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   79 (288)
T cd05061           2 EVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL--RERIEFLNEASVMKGFTCHHVVRLLGVVS   79 (288)
T ss_pred             cccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCH--HHHHHHHHHHHHHHhCCCCCeeeEEEEEc
Confidence            4566899999999999999999998775433335678999998644321  22334667999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .....|+||||+++|+|.+++...........                    .........++.++.||+.||.|||++|
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~l~~lH~~~  139 (288)
T cd05061          80 KGQPTLVVMELMAHGDLKSYLRSLRPEAENNP--------------------GRPPPTLQEMIQMAAEIADGMAYLNAKK  139 (288)
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHhccccccCC--------------------CCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999876421100000                    0001112233578899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.++|+|||+++.......                                             
T Consensus       140 i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~---------------------------------------------  174 (288)
T cd05061         140 FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDY---------------------------------------------  174 (288)
T ss_pred             CcCCCCChheEEEcCCCcEEECcCCcccccccccc---------------------------------------------
Confidence            99999999999999999999999999843221000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|||++ |..||.
T Consensus       175 -------------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~  223 (288)
T cd05061         175 -------------------------------YRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQ  223 (288)
T ss_pred             -------------------------------ccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCC
Confidence                                           000112245678999999998889999999999999999998 799999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc--CCCcCCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR--HEFFKGINW  469 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~--hp~f~~~~~  469 (517)
                      +....+....+.........  ..      ....+.++|.+||+.||++||++.+.++.+.+  ||||++++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         224 GLSNEQVLKFVMDGGYLDQP--DN------CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             CCCHHHHHHHHHcCCCCCCC--CC------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCCCC
Confidence            88877776666554322111  11      12358999999999999999999744444443  999999998

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.9e-44  Score=365.62  Aligned_cols=262  Identities=27%  Similarity=0.393  Sum_probs=197.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++.+.||+|+||.||+|.+..     .++.||||++...... .....++.+|+.+++.++||||+++++++... 
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   89 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDAV-----LDRNVAIKKLSRPFQN-QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK   89 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEecC-----CCceEEEEEeCCcccC-hHHHHHHHHHHHHHHHhCCCchhceeeeeeccc
Confidence            4789999999999999999999876     6788999998754221 23345566799999999999999999988643 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ...|+||||++ ++|.+.+...    +...                            .++.++.||+.||+|||
T Consensus        90 ~~~~~~~~~lv~e~~~-~~l~~~~~~~----l~~~----------------------------~~~~~~~qi~~aL~~LH  136 (355)
T cd07874          90 SLEEFQDVYLVMELMD-ANLCQVIQME----LDHE----------------------------RMSYLLYQMLCGIKHLH  136 (355)
T ss_pred             cccccceeEEEhhhhc-ccHHHHHhhc----CCHH----------------------------HHHHHHHHHHHHHHHHH
Confidence                 35799999995 4676665431    2211                            12367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       137 ~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~---------------------------------------------  171 (355)
T cd07874         137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT---------------------------------------------  171 (355)
T ss_pred             hCCcccCCCChHHEEECCCCCEEEeeCcccccCCC---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.|
T Consensus       172 ----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~p  217 (355)
T cd07874         172 ----------------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKIL  217 (355)
T ss_pred             ----------------------------------ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                                              0011234689999999999998999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCC----------------------CC-----CCC----CCCCCch--hHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKKP----------------------LT-----FPR----IGVSSSK--EFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~----------------------~~-----~p~----~~~~~~~--~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+..+.+..+....                      ..     ++.    .......  ......++++||.+||+.
T Consensus       218 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~  297 (355)
T cd07874         218 FPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI  297 (355)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcC
Confidence            99876554443332210                      00     000    0000000  001123578999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||++|||+.    |+|+||||..
T Consensus       298 dP~~Rps~~----ell~hp~~~~  316 (355)
T cd07874         298 DPAKRISVD----EALQHPYINV  316 (355)
T ss_pred             CchhcCCHH----HHhcCcchhc
Confidence            999999998    9999999973

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=1.3e-43  Score=385.16  Aligned_cols=152  Identities=35%  Similarity=0.604  Sum_probs=131.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|.++++||+|+||.||+|.+..     +++.||||++.............+..|+.++..++||||+++++++....
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~   77 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKN-----NSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSAN   77 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECC-----CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC
Confidence            4789999999999999999999886     67899999998655444445567788999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++||||||+.|++|.+++....  .+....                            ++.|+.||+.||+|||.+||||
T Consensus        78 ~~~lVmEy~~g~~L~~li~~~~--~l~~~~----------------------------~~~i~~qil~aL~yLH~~gIiH  127 (669)
T cd05610          78 NVYLVMEYLIGGDVKSLLHIYG--YFDEEM----------------------------AVKYISEVALALDYLHRHGIIH  127 (669)
T ss_pred             EEEEEEeCCCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCEEe
Confidence            9999999999999999886532  222221                            2478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~  269 (517)
                      |||||+||||+.++.+||+|||+++..
T Consensus       128 rDLKP~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610         128 RDLKPDNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             CCccHHHEEEcCCCCEEEEeCCCCccc
Confidence            999999999999999999999999754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=4e-47  Score=348.22  Aligned_cols=257  Identities=26%  Similarity=0.436  Sum_probs=212.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      -|.++.+||+|+||.||+|.++.     ++..+|||.+..+     ..++.+..|+.||.+++.|+||++|+.|.....+
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~E-----sG~v~AIK~VPV~-----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDL  103 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRE-----SGHVLAIKKVPVD-----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDL  103 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhc-----cCcEEEEEecCcc-----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCce
Confidence            37788999999999999999987     7899999999765     4456677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+|||||..|++.+.++.+. +.+.+.+..                            .+++..++||+|||...-||||
T Consensus       104 WIVMEYCGAGSiSDI~R~R~-K~L~E~EIs----------------------------~iL~~TLKGL~YLH~~~KIHRD  154 (502)
T KOG0574|consen  104 WIVMEYCGAGSISDIMRARR-KPLSEQEIS----------------------------AVLRDTLKGLQYLHDLKKIHRD  154 (502)
T ss_pred             EeehhhcCCCcHHHHHHHhc-CCccHHHHH----------------------------HHHHHHHhHHHHHHHHHHHHhh
Confidence            99999999999999887643 444444443                            4568999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      ||..|||++.+|+.||+|||.|-.+..                                                     
T Consensus       155 IKAGNILLNT~G~AKLADFGVAGQLTD-----------------------------------------------------  181 (502)
T KOG0574|consen  155 IKAGNILLNTDGIAKLADFGVAGQLTD-----------------------------------------------------  181 (502)
T ss_pred             cccccEEEcccchhhhhhccccchhhh-----------------------------------------------------
Confidence            999999999999999999999832211                                                     


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                               .-.+.++++|||.|||||++....|+.++||||||++..||..|++||.+..+..
T Consensus       182 -------------------------TMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMR  236 (502)
T KOG0574|consen  182 -------------------------TMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMR  236 (502)
T ss_pred             -------------------------hHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccc
Confidence                                     0123467799999999999999999999999999999999999999999877665


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      .+..|-..+    +.....++.|  +.++.|||+.||.++|++|-|+.    ++++|||+++..
T Consensus       237 AIFMIPT~P----PPTF~KPE~W--S~~F~DFi~~CLiK~PE~R~TA~----~L~~H~FiknA~  290 (502)
T KOG0574|consen  237 AIFMIPTKP----PPTFKKPEEW--SSEFNDFIRSCLIKKPEERKTAL----RLCEHTFIKNAP  290 (502)
T ss_pred             eeEeccCCC----CCCCCChHhh--hhHHHHHHHHHhcCCHHHHHHHH----HHhhhhhhcCCC
Confidence            544443332    2222222332  23589999999999999999998    999999998643

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=2.3e-44  Score=359.28  Aligned_cols=267  Identities=25%  Similarity=0.315  Sum_probs=187.5

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--CceeEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--SHYSCL  166 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~~l  166 (517)
                      .++||+|+||+||+|+++..   ..++.||+|.+.....     .....+|+.+|++++||||++++++|..  +..+|+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~---~~~~~~aiK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~l   77 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDG---KDDRDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   77 (317)
T ss_pred             ccccccCCCeEEEEEEEccC---CCCceEEEEEECCCCC-----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEE
Confidence            46899999999999997642   2457899999875421     2234569999999999999999999853  567899


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      ||||+ +++|..++..........                     .........++.++.||+.||+|||++||+|||||
T Consensus        78 v~e~~-~~~l~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlk  135 (317)
T cd07868          78 LFDYA-EHDLWHIIKFHRASKANK---------------------KPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK  135 (317)
T ss_pred             EEecc-CCCHHHHHHhcccccccC---------------------CcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC
Confidence            99999 568888776432111000                     00011223346789999999999999999999999


Q ss_pred             CCceEE----ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          247 PENVLV----REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       247 p~NILl----~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |+|||+    +.++.+||+|||+++.......                                                
T Consensus       136 p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~------------------------------------------------  167 (317)
T cd07868         136 PANILVMGEGPERGRVKIADMGFARLFNSPLK------------------------------------------------  167 (317)
T ss_pred             HHHEEEecCCCCcCcEEEeecCceeccCCCCc------------------------------------------------
Confidence            999999    4567899999999854321000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                 ........+||+.|+|||++.+. .++.++||||+||++|+|++|++||.+..
T Consensus       168 ---------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~  220 (317)
T cd07868         168 ---------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             ---------------------------cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCc
Confidence                                       00112245789999999999875 48999999999999999999999997543


Q ss_pred             h---------HHHHHHHhcCCCC-----------CCCC-------------CCCCchh-----HHhhhhHHHHHHHhccC
Q 010140          402 N---------EKTLINILKKPLT-----------FPRI-------------GVSSSKE-----FEEVVKLQDLISKLLVK  443 (517)
Q Consensus       402 ~---------~~~~~~i~~~~~~-----------~p~~-------------~~~~~~~-----~~~~~~l~dLi~~~L~~  443 (517)
                      .         ...+..+......           .+..             .......     ......+.+||.+||+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~  300 (317)
T cd07868         221 EDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTM  300 (317)
T ss_pred             ccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhcc
Confidence            2         1222222111000           0000             0000000     00112478999999999


Q ss_pred             CcccccCCCCChHHhhcCCCc
Q 010140          444 NPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ||.+|||++    |+|+||||
T Consensus       301 dP~~R~t~~----e~l~hp~f  317 (317)
T cd07868         301 DPIKRITSE----QAMQDPYF  317 (317)
T ss_pred             CcccCCCHH----HHhcCCCC
Confidence            999999998    99999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.3e-44  Score=388.38  Aligned_cols=270  Identities=27%  Similarity=0.433  Sum_probs=208.0

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+...+++|++++.||+|+||+||+|++..     ++..||+|++...... ......+..|+.+|+.|+|||||+++++
T Consensus         7 ~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~-----tg~~vAlKvIk~~~l~-e~~~~~~~~EI~IL~~L~HPNIVrl~d~   80 (1021)
T PTZ00266          7 DGESRLNEYEVIKKIGNGRFGEVFLVKHKR-----TQEFFCWKAISYRGLK-EREKSQLVIEVNVMRELKHKNIVRYIDR   80 (1021)
T ss_pred             CCccccCCEEEEEEEecCCCeEEEEEEECC-----CCeEEEEEEEeccccC-HHHHHHHHHHHHHHHHcCCCCcCeEEEE
Confidence            355667899999999999999999999986     6789999998754322 2334567779999999999999999998


Q ss_pred             eec--CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          158 FEA--SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       158 ~~~--~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      |..  ...+|||||||++|+|.++|.........+.                          ...++.|+.||+.||+||
T Consensus        81 f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~--------------------------E~~Il~Ia~QIL~ALaYL  134 (1021)
T PTZ00266         81 FLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIE--------------------------EHAIVDITRQLLHALAYC  134 (1021)
T ss_pred             EEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCC--------------------------HHHHHHHHHHHHHHHHHH
Confidence            854  4679999999999999998875321111111                          122347889999999999


Q ss_pred             Hhc-------CceeccCCCCceEEcc-----------------CCcEEeccCCCcccccccccccCCcchHHHHhhhccc
Q 010140          236 HMM-------GIVYRDLKPENVLVRE-----------------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKC  291 (517)
Q Consensus       236 H~~-------~iiHrDLKp~NILl~~-----------------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~  291 (517)
                      |+.       +||||||||+||||+.                 .+.+||+|||+++.+..                    
T Consensus       135 Hs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~--------------------  194 (1021)
T PTZ00266        135 HNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI--------------------  194 (1021)
T ss_pred             HhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc--------------------
Confidence            984       4999999999999964                 33589999999843211                    


Q ss_pred             CCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC
Q 010140          292 SIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG  371 (517)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~  371 (517)
                                                                                 .......+||+.|+|||++.+
T Consensus       195 -----------------------------------------------------------~s~~~s~vGTp~YmAPEvL~g  215 (1021)
T PTZ00266        195 -----------------------------------------------------------ESMAHSCVGTPYYWSPELLLH  215 (1021)
T ss_pred             -----------------------------------------------------------cccccccCCCccccCHHHHhc
Confidence                                                                       001123469999999999965


Q ss_pred             C--CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCccccc
Q 010140          372 Q--GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI  449 (517)
Q Consensus       372 ~--~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~  449 (517)
                      .  .++.++||||||||||||++|..||........+...+......+...        .+.++.+||..||..+|.+||
T Consensus       216 e~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi~~--------~S~eL~dLI~~~L~~dPeeRP  287 (1021)
T PTZ00266        216 ETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKG--------KSKELNILIKNLLNLSAKERP  287 (1021)
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCcCC--------CCHHHHHHHHHHhcCChhHCc
Confidence            3  488999999999999999999999987766555555444433332211        122589999999999999999


Q ss_pred             CCCCChHHhhcCCCcCCCCcc
Q 010140          450 GSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       450 t~~~~~~ell~hp~f~~~~~~  470 (517)
                      ++.    |+|.||||+.+...
T Consensus       288 Sa~----QlL~h~~ik~i~~p  304 (1021)
T PTZ00266        288 SAL----QCLGYQIIKNVGPP  304 (1021)
T ss_pred             CHH----HHhccHHHhhcCCC
Confidence            998    99999999876543

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-43  Score=343.38  Aligned_cols=258  Identities=37%  Similarity=0.687  Sum_probs=206.3

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHH-HhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL-TMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||.|+||.||+|.+..     .++.||+|++.+...........+..|..++ ...+||||+++++++..++..|+||
T Consensus         2 ~~l~~g~~~~v~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~   76 (260)
T cd05611           2 KPISKGAFGSVYLAKKRS-----TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVM   76 (260)
T ss_pred             ccCCcCCCeeEEEEEecC-----CCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEE
Confidence            579999999999999876     5688999999765443333334444555544 4458999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||++|++|..++....  .++....                            ..++.||+.||.|||+.||+||||+|+
T Consensus        77 e~~~~~~L~~~l~~~~--~~~~~~~----------------------------~~i~~qi~~aL~~lH~~~i~H~dl~p~  126 (260)
T cd05611          77 EYLNGGDCASLIKTLG--GLPEDWA----------------------------KQYIAEVVLGVEDLHQRGIIHRDIKPE  126 (260)
T ss_pred             eccCCCCHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeecCCCCHH
Confidence            9999999999886542  2222222                            367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      ||+++.++.++|+|||+++....                                                         
T Consensus       127 nil~~~~~~~~l~dfg~~~~~~~---------------------------------------------------------  149 (260)
T cd05611         127 NLLIDQTGHLKLTDFGLSRNGLE---------------------------------------------------------  149 (260)
T ss_pred             HeEECCCCcEEEeecccceeccc---------------------------------------------------------
Confidence            99999999999999998732110                                                         


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN  408 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~  408 (517)
                                               .....|++.|+|||.+.+..++.++||||||+++|+|++|..||...+.......
T Consensus       150 -------------------------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~  204 (260)
T cd05611         150 -------------------------NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDN  204 (260)
T ss_pred             -------------------------cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence                                     1123588899999999988889999999999999999999999998888777777


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +......++.....     ....++.++|.+||+.||++||++ ..++|++.||||+.++|+
T Consensus       205 ~~~~~~~~~~~~~~-----~~~~~~~~~i~~~l~~~p~~R~~~-~~~~~~l~~~~~~~~~~~  260 (260)
T cd05611         205 ILSRRINWPEEVKE-----FCSPEAVDLINRLLCMDPAKRLGA-NGYQEIKSHPFFKSINWD  260 (260)
T ss_pred             HHhcccCCCCcccc-----cCCHHHHHHHHHHccCCHHHccCC-CcHHHHHcChHhhcCCCC
Confidence            66555443332221     122358999999999999999988 456699999999999995

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.7e-44  Score=362.82  Aligned_cols=262  Identities=27%  Similarity=0.367  Sum_probs=200.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++++.||+|+||.||+|.+..     +++.||||++...... ......+.+|+.+|+.++||||++++++|... 
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   87 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTR-----LRQKVAVKKLSRPFQS-LIHARRTYRELRLLKHMKHENVIGLLDVFTPAT   87 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECC-----CCCEEEEEEeCchhhh-hHHHHHHHHHHHHHHhcCCCchhhhhhhhcccc
Confidence            3689999999999999999999876     6788999999765322 23345566799999999999999999988543 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ...|++||++ +++|..++..   ..++...                            ++.++.||+.||+|||
T Consensus        88 ~~~~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~----------------------------~~~i~~qi~~aL~~LH  135 (343)
T cd07878          88 SIENFNEVYLVTNLM-GADLNNIVKC---QKLSDEH----------------------------VQFLIYQLLRGLKYIH  135 (343)
T ss_pred             cccccCcEEEEeecC-CCCHHHHHhc---CCCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                 4579999998 8899887653   2233322                            2467899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       136 ~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~---------------------------------------------  170 (343)
T cd07878         136 SAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD---------------------------------------------  170 (343)
T ss_pred             HCCeecccCChhhEEECCCCCEEEcCCccceecCC---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .....+||+.|+|||++.+ ..++.++|||||||++|+|++|..
T Consensus       171 ------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  214 (343)
T cd07878         171 ------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKA  214 (343)
T ss_pred             ------------------------------------CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCC
Confidence                                                1123468999999999987 458999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCC-----------------CCCCchhH-----HhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRI-----------------GVSSSKEF-----EEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~-----------------~~~~~~~~-----~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+..+.+..+.......+..                 .......+     .....+.+||.+||+.||.+|||+. 
T Consensus       215 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~-  293 (343)
T cd07878         215 LFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISAS-  293 (343)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHH-
Confidence            998876655554443211100000                 00000000     0122478999999999999999998 


Q ss_pred             ChHHhhcCCCcCCC
Q 010140          454 GSVEIKRHEFFKGI  467 (517)
Q Consensus       454 ~~~ell~hp~f~~~  467 (517)
                         |+++||||...
T Consensus       294 ---ell~hp~~~~~  304 (343)
T cd07878         294 ---EALAHPYFSQY  304 (343)
T ss_pred             ---HHhcCcchhcc
Confidence               99999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=7.6e-44  Score=348.98  Aligned_cols=267  Identities=33%  Similarity=0.657  Sum_probs=196.0

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHH---HHhcCCCCccceeeeeecCceeEEE
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI---LTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~i---l~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      .||+|+||.||+|.+..     +++.||+|++.+..............|..+   +...+||||+.+++++..++..|+|
T Consensus         1 ~lg~G~~g~Vy~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv   75 (279)
T cd05633           1 IIGRGGFGEVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFI   75 (279)
T ss_pred             CcccCCCeEEEEEEECC-----CCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEE
Confidence            48999999999999876     678999999876533222222222334433   3345799999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||++||+|..++....  .+++..                            ++.++.||+.||+|||++||+||||||
T Consensus        76 ~e~~~~~~L~~~i~~~~--~l~~~~----------------------------~~~i~~qi~~al~~lH~~~ivH~dikp  125 (279)
T cd05633          76 LDLMNGGDLHYHLSQHG--VFSEKE----------------------------MRFYATEIILGLEHMHNRFVVYRDLKP  125 (279)
T ss_pred             EecCCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcCCCCCCH
Confidence            99999999998876542  233222                            236789999999999999999999999


Q ss_pred             CceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccc
Q 010140          248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIR  327 (517)
Q Consensus       248 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      +|||++.++.++|+|||++.....                                                        
T Consensus       126 ~Nil~~~~~~~~l~dfg~~~~~~~--------------------------------------------------------  149 (279)
T cd05633         126 ANILLDEHGHVRISDLGLACDFSK--------------------------------------------------------  149 (279)
T ss_pred             HHEEECCCCCEEEccCCcceeccc--------------------------------------------------------
Confidence            999999999999999998732210                                                        


Q ss_pred             cccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCCh--HH
Q 010140          328 EQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENN--EK  404 (517)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~~--~~  404 (517)
                                              .......||+.|+|||.+.+ ..++.++||||+||++|+|++|..||.....  ..
T Consensus       150 ------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~  205 (279)
T cd05633         150 ------------------------KKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH  205 (279)
T ss_pred             ------------------------cCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH
Confidence                                    00112358999999999874 5589999999999999999999999975432  12


Q ss_pred             HHHHH-hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc--CCCCCCC
Q 010140          405 TLINI-LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR--SIKPPEV  480 (517)
Q Consensus       405 ~~~~i-~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~--~~~p~~~  480 (517)
                      ..... .......+..         ...++.++|.+||..||.+|++.. ..++|+++||||++++|....  ...+|.+
T Consensus       206 ~~~~~~~~~~~~~~~~---------~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~  276 (279)
T cd05633         206 EIDRMTLTVNVELPDS---------FSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYLQKYPPPLI  276 (279)
T ss_pred             HHHHHhhcCCcCCccc---------cCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCCHhHHhcCCCCCCCC
Confidence            22221 1111122111         123589999999999999999621 234599999999999998663  3344433


Q ss_pred             C
Q 010140          481 P  481 (517)
Q Consensus       481 ~  481 (517)
                      |
T Consensus       277 ~  277 (279)
T cd05633         277 P  277 (279)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=8.6e-44  Score=352.51  Aligned_cols=267  Identities=27%  Similarity=0.377  Sum_probs=202.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++.     +++.||+|.+......  .....+.+|+.+++.++||||+++++++...+
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~   77 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKL-----TDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEK   77 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcC-----CCcEEEEEEEeccccc--CchhHHHHHHHHHHhcCCCCcceEEEEEecCC
Confidence            5789999999999999999999876     6788999998644211  22234556999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++ ++|..++.... ..+...                            .++.++.||+.||+|||++||+|
T Consensus        78 ~~~lv~e~~~-~~l~~~l~~~~-~~~~~~----------------------------~~~~~~~qi~~aL~~lH~~~i~H  127 (301)
T cd07873          78 SLTLVFEYLD-KDLKQYLDDCG-NSINMH----------------------------NVKLFLFQLLRGLNYCHRRKVLH  127 (301)
T ss_pred             eEEEEEeccc-cCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeC
Confidence            9999999996 68988876532 122222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++......                                                  
T Consensus       128 ~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~--------------------------------------------------  157 (301)
T cd07873         128 RDLKPQNLLINERGELKLADFGLARAKSIP--------------------------------------------------  157 (301)
T ss_pred             CCCCHHHEEECCCCcEEECcCcchhccCCC--------------------------------------------------
Confidence            999999999999999999999997322100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........+++.|+|||++.+. .++.++|||||||++|+|++|++||.+.+
T Consensus       158 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~  209 (301)
T cd07873         158 ----------------------------TKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGST  209 (301)
T ss_pred             ----------------------------CCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        0001123578899999998764 47889999999999999999999999887


Q ss_pred             hHHHHHHHhcCCCC-------------------CCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLT-------------------FPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~-------------------~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+....+......                   .+.........  .....++++||.+||+.||.+|||+.    |+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~----eil~  285 (301)
T cd07873         210 VEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAE----EAMK  285 (301)
T ss_pred             HHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHH----HHhc
Confidence            66555444321110                   01100000000  01233588999999999999999998    9999


Q ss_pred             CCCcCCCC
Q 010140          461 HEFFKGIN  468 (517)
Q Consensus       461 hp~f~~~~  468 (517)
                      ||||+...
T Consensus       286 h~~f~~~~  293 (301)
T cd07873         286 HPYFHCLG  293 (301)
T ss_pred             Cccccccc
Confidence            99998765

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-43  Score=342.05  Aligned_cols=260  Identities=28%  Similarity=0.424  Sum_probs=206.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH--HHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ++|.+.+.||+|++|.||+|.+..     +++.||+|.+.....  ........+.+|+.++++++||||+++++++..+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~-----~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVD-----TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDD   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcC-----CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccC
Confidence            579999999999999999999876     678899999864322  2223456678899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||++|++|.+++....  .++..                            ..+.++.||+.||.|||+.||+
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~~~--~~~~~----------------------------~~~~~~~~l~~~l~~lH~~~i~  126 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKAYG--ALTET----------------------------VTRKYTRQILEGVEYLHSNMIV  126 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHHhC--CCCHH----------------------------HHHHHHHHHHHHHHHHHhCCee
Confidence            99999999999999999887542  12221                            1236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.++|+|||+++.......                                               
T Consensus       127 H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------  159 (263)
T cd06625         127 HRDIKGANILRDSAGNVKLGDFGASKRLQTICS-----------------------------------------------  159 (263)
T ss_pred             cCCCCHHHEEEcCCCCEEEeecccceecccccc-----------------------------------------------
Confidence            999999999999999999999999843221000                                               


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .........|+..|+|||++.+..++.++|||||||++|+|++|+.||...+
T Consensus       160 ----------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  211 (263)
T cd06625         160 ----------------------------SGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE  211 (263)
T ss_pred             ----------------------------ccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc
Confidence                                        0000123457889999999999889999999999999999999999998876


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .......+........ ....      ....+.+||.+||..+|.+||++.    ++++||||
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~~------~~~~~~~li~~~l~~~p~~Rpt~~----~ll~~~~~  263 (263)
T cd06625         212 AMAAIFKIATQPTNPQ-LPSH------VSPDARNFLRRTFVENAKKRPSAE----ELLRHFFV  263 (263)
T ss_pred             hHHHHHHHhccCCCCC-CCcc------CCHHHHHHHHHHhhcCcccCCCHH----HHhhCCCC
Confidence            6665555544332211 1111      122489999999999999999998    99999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.1e-43  Score=356.05  Aligned_cols=272  Identities=22%  Similarity=0.314  Sum_probs=201.0

Q ss_pred             EEeeeecc--ceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           88 LLRRLGSG--DIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        88 i~~~LG~G--~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      ++++||+|  +||+||+++.+.     +++.||+|.+..+... ......+.+|+.+++.++||||++++++|..++..|
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~   75 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKP-----TGEYVTVRRINLEACT-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW   75 (327)
T ss_pred             hhhhccccccceEEEEEEeecc-----cCcEEEEEEechhhcc-HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEE
Confidence            56789999  789999999987     7889999999765332 233456677999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||+++|+|.+++.......++...                            ++.++.||+.||+|||++||+||||
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~l~~~~----------------------------~~~i~~qi~~~L~~LH~~~iiH~dl  127 (327)
T cd08227          76 VVTSFMAYGSAKDLICTHFMDGMSELA----------------------------IAYILQGVLKALDYIHHMGYVHRSV  127 (327)
T ss_pred             EEEeccCCCcHHHHHHhhccCCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEecCCC
Confidence            999999999999998664333333222                            2367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      ||+|||++.++.++++||+.+.........                                                  
T Consensus       128 kp~Nil~~~~~~~~l~~~~~~~~~~~~~~~--------------------------------------------------  157 (327)
T cd08227         128 KASHILISVDGKVYLSGLRSNLSMINHGQR--------------------------------------------------  157 (327)
T ss_pred             ChhhEEEecCCcEEEcccchhhcccccccc--------------------------------------------------
Confidence            999999999999999999865221100000                                                  


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                           ............++..|+|||++.+  ..++.++|||||||++|||++|..||......
T Consensus       158 ---------------------~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  216 (327)
T cd08227         158 ---------------------LRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT  216 (327)
T ss_pred             ---------------------ccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchh
Confidence                                 0000000112357788999999976  35899999999999999999999999876654


Q ss_pred             HHHHHHhcCCCCCCC-----------------------------------CCCC--CchhHHhhhhHHHHHHHhccCCcc
Q 010140          404 KTLINILKKPLTFPR-----------------------------------IGVS--SSKEFEEVVKLQDLISKLLVKNPK  446 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~-----------------------------------~~~~--~~~~~~~~~~l~dLi~~~L~~dP~  446 (517)
                      ...............                                   ....  ..........+.+||.+||+.||+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~  296 (327)
T cd08227         217 QMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPD  296 (327)
T ss_pred             HHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCch
Confidence            444333322111000                                   0000  000001234688999999999999


Q ss_pred             cccCCCCChHHhhcCCCcCCCC
Q 010140          447 KRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       447 ~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      +|||+.    |+++||||+.+.
T Consensus       297 ~Rpt~~----ell~~p~f~~~~  314 (327)
T cd08227         297 ARPSAS----TLLNHSFFKQIK  314 (327)
T ss_pred             hcCCHH----HHhcChhhhhcc
Confidence            999998    999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-43  Score=366.44  Aligned_cols=260  Identities=24%  Similarity=0.321  Sum_probs=195.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|.+.+.||+|+||.||+|.+..     .++.||||....         ..+.+|+.+|++++|||||++++++..++
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~-----~~~~vavK~~~~---------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~  233 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPD-----YPQRVVVKAGWY---------ASSVHEARLLRRLSHPAVLALLDVRVVGG  233 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECC-----CCCEEEEecccc---------cCHHHHHHHHHHCCCCCCCcEEEEEEECC
Confidence            4579999999999999999999886     578899996432         22345999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|||||++ .++|..++.... ..+...                            .++.|+.||+.||.|||++||||
T Consensus       234 ~~~lv~e~~-~~~L~~~l~~~~-~~l~~~----------------------------~~~~i~~qi~~aL~yLH~~gIvH  283 (461)
T PHA03211        234 LTCLVLPKY-RSDLYTYLGARL-RPLGLA----------------------------QVTAVARQLLSAIDYIHGEGIIH  283 (461)
T ss_pred             EEEEEEEcc-CCCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCEEE
Confidence            999999999 578988876532 122222                            22468899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||||+.++.+||+|||+++.......                                                
T Consensus       284 rDLKP~NILl~~~~~vkL~DFGla~~~~~~~~------------------------------------------------  315 (461)
T PHA03211        284 RDIKTENVLVNGPEDICLGDFGAACFARGSWS------------------------------------------------  315 (461)
T ss_pred             CcCCHHHEEECCCCCEEEcccCCceecccccc------------------------------------------------
Confidence            99999999999999999999999843221000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-  401 (517)
                                                  .......+||+.|+|||++.+..++.++|||||||+||||++|..|+.... 
T Consensus       316 ----------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~  367 (461)
T PHA03211        316 ----------------------------TPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASR  367 (461)
T ss_pred             ----------------------------cccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCc
Confidence                                        001123469999999999999999999999999999999999876654321 


Q ss_pred             -------hHHHHHHHhcCCC---CCCCCCC----------------------CCchhHHhhhhHHHHHHHhccCCccccc
Q 010140          402 -------NEKTLINILKKPL---TFPRIGV----------------------SSSKEFEEVVKLQDLISKLLVKNPKKRI  449 (517)
Q Consensus       402 -------~~~~~~~i~~~~~---~~p~~~~----------------------~~~~~~~~~~~l~dLi~~~L~~dP~~R~  449 (517)
                             ...+...+.....   .++....                      .+........++.+||.+||+.||.+||
T Consensus       368 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RP  447 (461)
T PHA03211        368 GDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRP  447 (461)
T ss_pred             ccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCc
Confidence                   1222222222111   1111000                      0000011223688999999999999999


Q ss_pred             CCCCChHHhhcCCCcCC
Q 010140          450 GSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       450 t~~~~~~ell~hp~f~~  466 (517)
                      |+.    |+|+||||++
T Consensus       448 sa~----elL~hp~f~~  460 (461)
T PHA03211        448 SAA----ELLRLPLFQS  460 (461)
T ss_pred             CHH----HHhhCcccCC
Confidence            998    9999999975

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2e-43  Score=348.23  Aligned_cols=267  Identities=28%  Similarity=0.425  Sum_probs=210.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+.|+++++||.|+||.||+|++..     +++.||+|++....   ......+.+|+.+++.++||||+++++.+..
T Consensus         9 ~~~~~y~i~~~lg~g~~g~vy~~~~~~-----~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   80 (292)
T cd06644           9 DPNEVWEIIGELGDGAFGKVYKAKNKE-----TGALAAAKVIETKS---EEELEDYMVEIEILATCNHPYIVKLLGAFYW   80 (292)
T ss_pred             CcchhhhhhheecCCCCeEEEEEEECC-----CCceEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe
Confidence            344679999999999999999999876     67889999987543   2335566779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++..|+||||++|++|..++.... ..+....                            ++.++.||+.||+|||++||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~----------------------------~~~~~~ql~~~l~~lH~~~i  131 (292)
T cd06644          81 DGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQ----------------------------IQVICRQMLEALQYLHSMKI  131 (292)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHhcCCe
Confidence            999999999999999988765432 2222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.+||+|||++......                                                
T Consensus       132 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~------------------------------------------------  163 (292)
T cd06644         132 IHRDLKAGNVLLTLDGDIKLADFGVSAKNVKT------------------------------------------------  163 (292)
T ss_pred             eecCCCcceEEEcCCCCEEEccCccceecccc------------------------------------------------
Confidence            99999999999999999999999987321100                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                    ........|++.|+|||++.+     ..++.++|||||||++|+|++|..
T Consensus       164 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~  213 (292)
T cd06644         164 ------------------------------LQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEP  213 (292)
T ss_pred             ------------------------------ccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCC
Confidence                                          001123358889999999853     346889999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ||...+....+.++............      ....++.+||.+||..||++||++.    ++++||||..++|...
T Consensus       214 p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~~~~~~~~~  280 (292)
T cd06644         214 PHHELNPMRVLLKIAKSEPPTLSQPS------KWSMEFRDFLKTALDKHPETRPSAA----QLLEHPFVSSVTSNRP  280 (292)
T ss_pred             CCccccHHHHHHHHhcCCCccCCCCc------ccCHHHHHHHHHHhcCCcccCcCHH----HHhcCccccccccchh
Confidence            99887766666555543221111111      1122589999999999999999998    9999999999998764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=5.5e-44  Score=345.56  Aligned_cols=256  Identities=38%  Similarity=0.630  Sum_probs=201.7

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      |++++.||+|+||+||+|++..     .++.||+|++......... .....+|+.+++.++||||+++++++......|
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~-----~~~~~~~K~~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~   74 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKK-----NGQKVAVKIIDKSEIEEEE-REENIREIKILRRLRHPNIVQILDVFQDDNYLY   74 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETT-----TTEEEEEEEEESTTHHHHH-HHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECC-----CCeEEEEEEeccccccccc-cchhhhhhhcccccccccccccccccccccccc
Confidence            7899999999999999999987     6788999999876544332 223345999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||+++++|.+++...  ..+...                            .+..++.||+.||++||++||+||||
T Consensus        75 ~v~~~~~~~~L~~~l~~~--~~~~~~----------------------------~~~~~~~qi~~~L~~Lh~~~i~H~di  124 (260)
T PF00069_consen   75 IVMEYCPGGSLQDYLQKN--KPLSEE----------------------------EILKIAYQILEALAYLHSKGIVHRDI  124 (260)
T ss_dssp             EEEEEETTEBHHHHHHHH--SSBBHH----------------------------HHHHHHHHHHHHHHHHHHTTEEESSB
T ss_pred             cccccccccccccccccc--cccccc----------------------------cccccccccccccccccccccccccc
Confidence            999999999999998732  222222                            22367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      ||+||+++.++.++|+|||.+.....                                                      
T Consensus       125 kp~NIl~~~~~~~~l~Dfg~~~~~~~------------------------------------------------------  150 (260)
T PF00069_consen  125 KPENILLDENGEVKLIDFGSSVKLSE------------------------------------------------------  150 (260)
T ss_dssp             SGGGEEESTTSEEEESSGTTTEESTS------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc------------------------------------------------------
Confidence            99999999999999999999843200                                                      


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-CCCCCccchHHHHHHHHHHHhhCCCCCCCCC---
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN---  401 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-~~~~~~~~DiWSlGvil~elltG~~Pf~~~~---  401 (517)
                                              .........+++.|+|||++. +..++.++||||||+++|+|++|..||....   
T Consensus       151 ------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~  206 (260)
T PF00069_consen  151 ------------------------NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDD  206 (260)
T ss_dssp             ------------------------TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHH
T ss_pred             ------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence                                    011123446899999999998 7778999999999999999999999999873   


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+.+..............     .....+.+||.+||+.||++||++.    ++++||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~~p~~R~~~~----~l~~~~~~  260 (260)
T PF00069_consen  207 QLEIIEKILKRPLPSSSQQSR-----EKSEELRDLIKKMLSKDPEQRPSAE----ELLKHPWF  260 (260)
T ss_dssp             HHHHHHHHHHTHHHHHTTSHT-----TSHHHHHHHHHHHSSSSGGGSTTHH----HHHTSGGG
T ss_pred             hhhhhhhcccccccccccccc-----hhHHHHHHHHHHHccCChhHCcCHH----HHhcCCCC
Confidence            233333333221111110000     0113599999999999999999998    99999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1e-43  Score=374.68  Aligned_cols=284  Identities=22%  Similarity=0.316  Sum_probs=198.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCC----------CCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGL----------PQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL  151 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~----------~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  151 (517)
                      ..++|+++++||+|+||+||+|..+......          .+...+.+++.+...........+.+|+.+|++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3578999999999999999999876421100          001111111211111122334567789999999999999


Q ss_pred             cceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       152 v~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      |++++++...+..|+|||++ +++|..++........                         .......++.|+.||+.|
T Consensus       226 v~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~-------------------------~~~~~~~~~~i~~ql~~a  279 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKY-DFDLYSFMYDEAFDWK-------------------------DRPLLKQTRAIMKQLLCA  279 (501)
T ss_pred             CcEeEEEEECCeeEEEEecc-ccCHHHHHhhcccccc-------------------------ccccHHHHHHHHHHHHHH
Confidence            99999999999999999999 5688777654321100                         011123345789999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      |+|||++|||||||||+|||++.++.+||+|||+++.+....                                      
T Consensus       280 L~yLH~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~--------------------------------------  321 (501)
T PHA03210        280 VEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKER--------------------------------------  321 (501)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEEEeCCCceecCccc--------------------------------------
Confidence            999999999999999999999999999999999985432100                                      


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHh
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ell  391 (517)
                                                             .......+||+.|+|||++.+..++.++|||||||++|||+
T Consensus       322 ---------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  362 (501)
T PHA03210        322 ---------------------------------------EAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDML  362 (501)
T ss_pred             ---------------------------------------ccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHH
Confidence                                                   00112357999999999999999999999999999999999


Q ss_pred             hCCCC-CCCC--ChHHHHHHHhcCC----CCCCCCC----------------CCC---chhHHhhhhHHHHHHHhccCCc
Q 010140          392 YGTTP-FKGE--NNEKTLINILKKP----LTFPRIG----------------VSS---SKEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       392 tG~~P-f~~~--~~~~~~~~i~~~~----~~~p~~~----------------~~~---~~~~~~~~~l~dLi~~~L~~dP  445 (517)
                      +|..+ |...  .....+.+++...    ..+|...                ...   ........++.++|.+||++||
T Consensus       363 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP  442 (501)
T PHA03210        363 SHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDW  442 (501)
T ss_pred             HCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCc
Confidence            98764 4322  2223333332211    1111100                000   0001122357889999999999


Q ss_pred             ccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          446 KKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       446 ~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+||++.    |+|.||||...++..+
T Consensus       443 ~~Rpsa~----elL~hp~f~~~~~~~~  465 (501)
T PHA03210        443 HLRPGAA----ELLALPLFSAEEEEEI  465 (501)
T ss_pred             ccCcCHH----HHhhChhhhcCCchHH
Confidence            9999998    9999999998876654

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-45  Score=362.68  Aligned_cols=253  Identities=28%  Similarity=0.371  Sum_probs=212.7

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      -|.-++.||.|+||.||.|++..     +...||||.+.-.......++..+..|+..|+++.|||+|.+-++|-.+...
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~-----n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~Ta  101 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTA  101 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccC-----ccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchH
Confidence            47778899999999999999987     7789999999766555667888999999999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ||||||| -|+-.+++.-+. +++.+.++                            .-|+.+.+.||+|||+.+.||||
T Consensus       102 WLVMEYC-lGSAsDlleVhk-KplqEvEI----------------------------AAi~~gaL~gLaYLHS~~~IHRD  151 (948)
T KOG0577|consen  102 WLVMEYC-LGSASDLLEVHK-KPLQEVEI----------------------------AAITHGALQGLAYLHSHNRIHRD  151 (948)
T ss_pred             HHHHHHH-hccHHHHHHHHh-ccchHHHH----------------------------HHHHHHHHHHHHHHHHhhHHhhh
Confidence            9999999 567777776543 23333332                            35678999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      ||..|||+++.|.|||+|||.|....                                                      
T Consensus       152 iKAGNILLse~g~VKLaDFGSAsi~~------------------------------------------------------  177 (948)
T KOG0577|consen  152 IKAGNILLSEPGLVKLADFGSASIMA------------------------------------------------------  177 (948)
T ss_pred             ccccceEecCCCeeeeccccchhhcC------------------------------------------------------
Confidence            99999999999999999999873221                                                      


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ...+|+|||+|||||++..   ..|+-++||||||+++.||.-.++|+...+
T Consensus       178 ----------------------------PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN  229 (948)
T KOG0577|consen  178 ----------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  229 (948)
T ss_pred             ----------------------------chhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch
Confidence                                        2357899999999999863   459999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ....+..|.....+...     ..+|.  ..++.|+..||++-|.+|||++    ++|+|+|..
T Consensus       230 AMSALYHIAQNesPtLq-----s~eWS--~~F~~Fvd~CLqKipqeRptse----~ll~H~fv~  282 (948)
T KOG0577|consen  230 AMSALYHIAQNESPTLQ-----SNEWS--DYFRNFVDSCLQKIPQERPTSE----ELLKHRFVL  282 (948)
T ss_pred             HHHHHHHHHhcCCCCCC-----CchhH--HHHHHHHHHHHhhCcccCCcHH----HHhhcchhc
Confidence            98888888776433222     12222  2489999999999999999998    999999975

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=3.8e-43  Score=339.36  Aligned_cols=256  Identities=27%  Similarity=0.441  Sum_probs=205.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-Cce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-SHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~  163 (517)
                      +|++++.||+|++|.||+++++.     .++.||+|.+...... ......+..|+.++++++||||+++++.+.. +..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRT-----DGKQYVIKKLNLRNAS-RRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGL   74 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcC-----CCcEEEEEEEehhhcC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCE
Confidence            58999999999999999999876     5678999998754322 2334556779999999999999999998864 456


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+||||+++++|.+++.......++..+.                            ..++.||+.||+|||++||+||
T Consensus        75 ~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~----------------------------~~~~~~l~~~l~~lH~~~i~H~  126 (257)
T cd08223          75 LYIVMGFCEGGDLYHKLKEQKGKLLPENQV----------------------------VEWFVQIAMALQYLHEKHILHR  126 (257)
T ss_pred             EEEEecccCCCcHHHHHHHhcCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCeecc
Confidence            899999999999999887643333333332                            3678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++.......                                                  
T Consensus       127 di~p~nil~~~~~~~~l~df~~~~~~~~~~--------------------------------------------------  156 (257)
T cd08223         127 DLKTQNVFLTRTNIIKVGDLGIARVLENQC--------------------------------------------------  156 (257)
T ss_pred             CCCchhEEEecCCcEEEecccceEEecccC--------------------------------------------------
Confidence            999999999999999999999974321100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                  .......|++.|+|||++.+..++.++|||||||++|+|++|+.||...+..
T Consensus       157 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~  208 (257)
T cd08223         157 ----------------------------DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN  208 (257)
T ss_pred             ----------------------------CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH
Confidence                                        0112345889999999999988999999999999999999999999987776


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .....+..+....  ....      ....+.+||.+||+.||++||++.    ++++||||
T Consensus       209 ~~~~~~~~~~~~~--~~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~~l~~~~~  257 (257)
T cd08223         209 SLVYRIIEGKLPP--MPKD------YSPELGELIATMLSKRPEKRPSVK----SILRQPYI  257 (257)
T ss_pred             HHHHHHHhcCCCC--Cccc------cCHHHHHHHHHHhccCcccCCCHH----HHhcCCCC
Confidence            6666665543321  1111      223589999999999999999998    99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=3.1e-43  Score=349.67  Aligned_cols=262  Identities=27%  Similarity=0.350  Sum_probs=202.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||++++..     ++..+|+|.+..+..  .....++.+|+.++++++||||+++++++..++.
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   73 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRP-----SGLIMARKLIHLEIK--PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGE   73 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcC-----CCeEEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCE
Confidence            479999999999999999999876     567899999864421  2334567779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCcee
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~iiH  242 (517)
                      +|+||||++|++|.+++...  ..++...                            ++.++.||+.||.|||+ .+++|
T Consensus        74 ~~lv~ey~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~~i~H  123 (308)
T cd06615          74 ISICMEHMDGGSLDQVLKKA--GRIPENI----------------------------LGKISIAVLRGLTYLREKHKIMH  123 (308)
T ss_pred             EEEEeeccCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhhCCEEE
Confidence            99999999999999998764  2222222                            23678999999999998 59999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++.....                                                   
T Consensus       124 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~---------------------------------------------------  152 (308)
T cd06615         124 RDVKPSNILVNSRGEIKLCDFGVSGQLID---------------------------------------------------  152 (308)
T ss_pred             CCCChHHEEEecCCcEEEccCCCcccccc---------------------------------------------------
Confidence            99999999999999999999998732110                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   ......+|++.|+|||.+.+..++.++|||||||++|+|++|..||...+.
T Consensus       153 -----------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~  203 (308)
T cd06615         153 -----------------------------SMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA  203 (308)
T ss_pred             -----------------------------cccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch
Confidence                                         011234689999999999888899999999999999999999999986654


Q ss_pred             HHHHHHHhcCCCCCCCCC-----------------------------CCCchhHHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          403 EKTLINILKKPLTFPRIG-----------------------------VSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~-----------------------------~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ......+.......+...                             .+.........++.+||.+||..||++||++. 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~-  282 (308)
T cd06615         204 KELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLK-  282 (308)
T ss_pred             hhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHH-
Confidence            333222211110000000                             00000001223589999999999999999998 


Q ss_pred             ChHHhhcCCCcCC
Q 010140          454 GSVEIKRHEFFKG  466 (517)
Q Consensus       454 ~~~ell~hp~f~~  466 (517)
                         |+++||||..
T Consensus       283 ---~ll~~~~~~~  292 (308)
T cd06615         283 ---ELTKHPFIKR  292 (308)
T ss_pred             ---HHhcChhhhh
Confidence               9999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-45  Score=360.43  Aligned_cols=250  Identities=28%  Similarity=0.413  Sum_probs=204.8

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccce
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTL  154 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l  154 (517)
                      ....|++..+...-++-||+|+.|.||+|+.++       +.||||.++.-..          .+++-|++|+|||||.+
T Consensus       115 q~e~WeiPFe~IsELeWlGSGaQGAVF~Grl~n-------etVAVKKV~elkE----------TdIKHLRkLkH~NII~F  177 (904)
T KOG4721|consen  115 QEELWEIPFEEISELEWLGSGAQGAVFLGRLHN-------ETVAVKKVRELKE----------TDIKHLRKLKHPNIITF  177 (904)
T ss_pred             hhhhccCCHHHhhhhhhhccCcccceeeeeccC-------ceehhHHHhhhhh----------hhHHHHHhccCcceeeE
Confidence            344567777778888999999999999999875       6799998854321          27888999999999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      .|+|.....+|||||||..|.|+..|+...  .+...                            .+..|..+|+.|+.|
T Consensus       178 kGVCtqsPcyCIiMEfCa~GqL~~VLka~~--~itp~----------------------------llv~Wsk~IA~GM~Y  227 (904)
T KOG4721|consen  178 KGVCTQSPCYCIIMEFCAQGQLYEVLKAGR--PITPS----------------------------LLVDWSKGIAGGMNY  227 (904)
T ss_pred             eeeecCCceeEEeeeccccccHHHHHhccC--ccCHH----------------------------HHHHHHHHhhhhhHH
Confidence            999999999999999999999999987642  11111                            123678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||.+.|||||||.-||||+.+..|||+|||.++.....                                          
T Consensus       228 LH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~------------------------------------------  265 (904)
T KOG4721|consen  228 LHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK------------------------------------------  265 (904)
T ss_pred             HHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh------------------------------------------
Confidence            99999999999999999999999999999998543311                                          


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                           ...-+|+||..|||||++...+.+.|+|||||||+|||||||+
T Consensus       266 -------------------------------------STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~E  308 (904)
T KOG4721|consen  266 -------------------------------------STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGE  308 (904)
T ss_pred             -------------------------------------hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcC
Confidence                                                 1234679999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||...+...++.-+-...+..|...       .++..++=||+.||+-.|.+||++.    ++|.|
T Consensus       309 iPYkdVdssAIIwGVGsNsL~LpvPs-------tcP~GfklL~Kqcw~sKpRNRPSFr----qil~H  364 (904)
T KOG4721|consen  309 IPYKDVDSSAIIWGVGSNSLHLPVPS-------TCPDGFKLLLKQCWNSKPRNRPSFR----QILLH  364 (904)
T ss_pred             CCccccchheeEEeccCCcccccCcc-------cCchHHHHHHHHHHhcCCCCCccHH----HHHHH
Confidence            99998777666555544444333221       1222488899999999999999998    99998

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=5e-43  Score=338.19  Aligned_cols=256  Identities=26%  Similarity=0.413  Sum_probs=208.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|.+.+.||+|+||.||+|.++.     +++.|++|.+...... ......+..|+.+++.++||||+++++++...+..
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   74 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKA-----DKRVYAMKQIDLSKMN-RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKL   74 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcC-----CCcEEEEEEeehhhCC-HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEE
Confidence            58899999999999999999886     6788999998754322 23345677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||++|++|.+++.......+.....                            ..++.||+.||.|||++||+|||
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~i~~~l~~al~~lH~~~i~h~d  126 (256)
T cd08529          75 NIVMEYAENGDLHKLLKMQRGRPLPEDQV----------------------------WRFFIQILLGLAHLHSKKILHRD  126 (256)
T ss_pred             EEEEEeCCCCcHHHHHHHhcCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcccCC
Confidence            99999999999999987653333322222                            36778999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||+++.+....                                                   
T Consensus       127 l~~~nili~~~~~~~l~df~~~~~~~~~~---------------------------------------------------  155 (256)
T cd08529         127 IKSLNLFLDAYDNVKIGDLGVAKLLSDNT---------------------------------------------------  155 (256)
T ss_pred             CCcceEEEeCCCCEEEcccccceeccCcc---------------------------------------------------
Confidence            99999999999999999999874332100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|++.|+|||++.+..++.++|||||||++|+|++|+.||...+...
T Consensus       156 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  208 (256)
T cd08529         156 ---------------------------NFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA  208 (256)
T ss_pred             ---------------------------chhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                       01123358889999999999889999999999999999999999999888777


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+........  ...      ....+.++|.+||+.+|++||++.    ++++|||+
T Consensus       209 ~~~~~~~~~~~~~--~~~------~~~~~~~~i~~~l~~~p~~Rp~~~----~ll~~~~~  256 (256)
T cd08529         209 LILKIIRGVFPPV--SQM------YSQQLAQLIDQCLTKDYRQRPDTF----QLLRNPSL  256 (256)
T ss_pred             HHHHHHcCCCCCC--ccc------cCHHHHHHHHHHccCCcccCcCHH----HHhhCCCC
Confidence            7777665543221  111      122589999999999999999998    99999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.8e-43  Score=341.45  Aligned_cols=256  Identities=39%  Similarity=0.720  Sum_probs=207.8

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||.|+||.||+|++..     +++.||+|++.+...........+..|+.+++.++||||+++++.+.++..+|+||||+
T Consensus         1 lg~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKS-----KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECC-----CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecC
Confidence            7999999999999876     57889999998765444445567888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      ++++|.+++....  .++...                            ++.++.||+.||+|||++|++|+||||+||+
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~----------------------------~~~~~~~i~~~l~~lH~~~~~h~dl~~~nil  125 (262)
T cd05572          76 LGGELWTILRDRG--LFDEYT----------------------------ARFYIACVVLAFEYLHNRGIIYRDLKPENLL  125 (262)
T ss_pred             CCCcHHHHHhhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHhhCCcccCCCCHHHEE
Confidence            9999999887642  222222                            2367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.++|+|||++......                                                           
T Consensus       126 v~~~~~~~l~df~~~~~~~~~-----------------------------------------------------------  146 (262)
T cd05572         126 LDSNGYVKLVDFGFAKKLKSG-----------------------------------------------------------  146 (262)
T ss_pred             EcCCCCEEEeeCCcccccCcc-----------------------------------------------------------
Confidence            999999999999997432210                                                           


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC--hHHHHHHH
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NEKTLINI  409 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~--~~~~~~~i  409 (517)
                                          .......|++.|+|||.+.+..++.++|+|||||++|+|++|..||....  ..+.+..+
T Consensus       147 --------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  206 (262)
T cd05572         147 --------------------QKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDI  206 (262)
T ss_pred             --------------------cccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence                                01122358889999999988889999999999999999999999998776  55666666


Q ss_pred             hc--CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcc
Q 010140          410 LK--KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       410 ~~--~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~  470 (517)
                      ..  ....+|...         ..++.++|.+||..||++|++.. ..++|+++||||++.+|+
T Consensus       207 ~~~~~~~~~~~~~---------~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~  261 (262)
T cd05572         207 LKGNGKLEFPNYI---------DKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDWE  261 (262)
T ss_pred             hccCCCCCCCccc---------CHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhCCCCC
Confidence            63  233333222         12489999999999999999932 334699999999999995

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-43  Score=345.95  Aligned_cols=262  Identities=27%  Similarity=0.441  Sum_probs=208.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||.|+||.||+|.+..     ++..+|+|++....   ......+..|+.+++.++||||+++++.+..+.
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   75 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKE-----TGLFAAAKIIQIES---EEELEDFMVEIDILSECKHPNIVGLYEAYFYEN   75 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcC-----CCcEEEEEEEeeCC---HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC
Confidence            4679999999999999999999876     56889999986442   233456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|..++.... ..+++..+                            +.++.|++.||.|||++||+|
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~----------------------------~~~~~ql~~~l~~lh~~~i~h  126 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLELE-RGLTEPQI----------------------------RYVCRQMLEALNFLHSHKVIH  126 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHhc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999999886532 22333222                            367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||++......                                                  
T Consensus       127 ~dl~p~nili~~~~~~~l~d~g~~~~~~~~--------------------------------------------------  156 (280)
T cd06611         127 RDLKAGNILLTLDGDVKLADFGVSAKNKST--------------------------------------------------  156 (280)
T ss_pred             CCCChhhEEECCCCCEEEccCccchhhccc--------------------------------------------------
Confidence            999999999999999999999987322100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                  ........|++.|+|||++..     ..++.++|||||||++|+|++|++||
T Consensus       157 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~  208 (280)
T cd06611         157 ----------------------------LQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPH  208 (280)
T ss_pred             ----------------------------ccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCc
Confidence                                        001123468999999999853     34678999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      ...+....+..+..............      ..++.+||.+||+.||.+||++.    ++++||||.....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~~l~~~p~~Rps~~----~il~~~~~~~~~~  270 (280)
T cd06611         209 HELNPMRVLLKILKSEPPTLDQPSKW------SSSFNDFLKSCLVKDPDDRPTAA----ELLKHPFVSDQSD  270 (280)
T ss_pred             ccCCHHHHHHHHhcCCCCCcCCcccC------CHHHHHHHHHHhccChhhCcCHH----HHhcChhhcccch
Confidence            98877776666665432211111111      12489999999999999999998    9999999987643

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=8.6e-43  Score=338.64  Aligned_cols=262  Identities=26%  Similarity=0.385  Sum_probs=204.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH---HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA---LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~---~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      +|++.+.||+|+||.||+|...      +++.+|+|.+....   ........++.+|+.+++.++|+||+++++++.+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   74 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN------QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD   74 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc------CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC
Confidence            5889999999999999999764      45789999886431   22234456788899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||++|++|.+++.+..  .++...                            +..++.||+.||+|||+.||+
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~  124 (265)
T cd06631          75 NTISIFMEFVPGGSISSILNRFG--PLPEPV----------------------------FCKYTKQILDGVAYLHNNCVV  124 (265)
T ss_pred             CeEEEEEecCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999986642  222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |+||||+||+++.++.++|+|||++.........                                              
T Consensus       125 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~----------------------------------------------  158 (265)
T cd06631         125 HRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLH----------------------------------------------  158 (265)
T ss_pred             cCCcCHHhEEECCCCeEEeccchhhHhhhhcccc----------------------------------------------
Confidence            9999999999999999999999987432110000                                              


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                ...........|+..|+|||++.+..++.++|||||||++|+|++|..||...+
T Consensus       159 --------------------------~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  212 (265)
T cd06631         159 --------------------------GTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD  212 (265)
T ss_pred             --------------------------ccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC
Confidence                                      000011123468999999999998889999999999999999999999998776


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .......+.......+......      ..++.++|.+||..+|.+||++.    |+++||||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~~~p~~Rp~~~----~~l~~~~~  265 (265)
T cd06631         213 RLAAMFYIGAHRGLMPRLPDSF------SAAAIDFVTSCLTRDQHERPSAL----QLLRHDFL  265 (265)
T ss_pred             hHHHHHHhhhccCCCCCCCCCC------CHHHHHHHHHHhcCCcccCCCHH----HHhcCCCC
Confidence            6555444443322222222222      22489999999999999999998    99999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=3.2e-43  Score=342.91  Aligned_cols=256  Identities=28%  Similarity=0.415  Sum_probs=199.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA-  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~-  160 (517)
                      .+.|++.+.||+|+||.||+|....     +++.||+|++....    .....+..|+.+++++ +||||+++++++.. 
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~~aik~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   75 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVK-----TGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKK   75 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcC-----CCcEEEEEEEEcCC----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeec
Confidence            3579999999999999999999876     67899999986542    1223456689999998 79999999999864 


Q ss_pred             -----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          161 -----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       161 -----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                           ...+|+||||+++|+|.+++.......+.....                            +.++.||+.||+||
T Consensus        76 ~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~----------------------------~~~~~qi~~~l~~L  127 (272)
T cd06637          76 NPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWI----------------------------AYICREILRGLSHL  127 (272)
T ss_pred             CCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHHHHH
Confidence                 346899999999999999887643333333222                            36789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |+++|+||||||+||+++.++.++|+|||++......                                           
T Consensus       128 H~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~-------------------------------------------  164 (272)
T cd06637         128 HQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT-------------------------------------------  164 (272)
T ss_pred             HHCCCccCCCCHHHEEECCCCCEEEccCCCceecccc-------------------------------------------
Confidence            9999999999999999999999999999998432110                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHH
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~el  390 (517)
                                                         ........|++.|+|||++.+     ..++.++|||||||++|||
T Consensus       165 -----------------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el  209 (272)
T cd06637         165 -----------------------------------VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEM  209 (272)
T ss_pred             -----------------------------------cccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHH
Confidence                                               001223468999999999863     3578899999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ++|..||...........+.......... .      ....++.+||.+||..||.+||++.    ++++||||
T Consensus       210 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~li~~~l~~~p~~Rpt~~----~il~~~~~  272 (272)
T cd06637         210 AEGAPPLCDMHPMRALFLIPRNPAPRLKS-K------KWSKKFQSFIESCLVKNHSQRPTTE----QLMKHPFI  272 (272)
T ss_pred             HhCCCCccccCHHHHHHHHhcCCCCCCCC-C------CcCHHHHHHHHHHcCCChhhCCCHH----HHhhCCCC
Confidence            99999998766555444443322111110 1      1123589999999999999999998    99999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.6e-43  Score=360.67  Aligned_cols=289  Identities=16%  Similarity=0.186  Sum_probs=204.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|++.+.||+|+||.||+|++.......+...||||++......  .....+.+|+.+++.+ +|||||+++++
T Consensus        33 ~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~il~~l~~h~nIv~~~~~  110 (374)
T cd05106          33 WEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHT--DEREALMSELKILSHLGQHKNIVNLLGA  110 (374)
T ss_pred             ccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCH--HHHHHHHHHHHHHHhhccCCceeeEeeE
Confidence            34566789999999999999999999765433335568999999754322  2345677799999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccch--hh---------hh-hhhh----------------hh------
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA--KF---------VF-FLLF----------------FF------  203 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~--~~---------~~-~~l~----------------~~------  203 (517)
                      +...+.+|+|||||++|+|.+++.............  ..         .. ...+                .+      
T Consensus       111 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (374)
T cd05106         111 CTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSS  190 (374)
T ss_pred             ecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccc
Confidence            999999999999999999999986532110000000  00         00 0000                00      


Q ss_pred             ------hhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccC
Q 010140          204 ------FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLR  277 (517)
Q Consensus       204 ------~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~  277 (517)
                            .................++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......   
T Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~---  267 (374)
T cd05106         191 SSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN---  267 (374)
T ss_pred             ccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcc---
Confidence                  00000000111233445678999999999999999999999999999999999999999999843221000   


Q ss_pred             CcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCccc
Q 010140          278 PKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSF  357 (517)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (517)
                                                                                               .......
T Consensus       268 -------------------------------------------------------------------------~~~~~~~  274 (374)
T cd05106         268 -------------------------------------------------------------------------YVVKGNA  274 (374)
T ss_pred             -------------------------------------------------------------------------eeeccCC
Confidence                                                                                     0001122


Q ss_pred             CCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHH
Q 010140          358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDL  436 (517)
Q Consensus       358 ~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dL  436 (517)
                      .+++.|||||++.+..++.++|||||||++|||++ |..||........+..+.......+....       .+.++.+|
T Consensus       275 ~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~l  347 (374)
T cd05106         275 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDF-------APPEIYSI  347 (374)
T ss_pred             CCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCC-------CCHHHHHH
Confidence            35678999999998889999999999999999997 99999887655555454443322221111       12358999


Q ss_pred             HHHhccCCcccccCCC
Q 010140          437 ISKLLVKNPKKRIGSL  452 (517)
Q Consensus       437 i~~~L~~dP~~R~t~~  452 (517)
                      |.+||+.||++||++.
T Consensus       348 i~~cl~~dp~~RPs~~  363 (374)
T cd05106         348 MKMCWNLEPTERPTFS  363 (374)
T ss_pred             HHHHcCCChhhCcCHH
Confidence            9999999999999997

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=3.8e-43  Score=344.81  Aligned_cols=263  Identities=26%  Similarity=0.350  Sum_probs=198.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+|+++.     ++..||||++...... ......+..|+.+++.++||||+++++++.+++..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   74 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKK-----TGQIVAMKKIRLESEE-EGVPSTAIREISLLKELQHPNIVCLQDVLMQESRL   74 (285)
T ss_pred             CceEeeEecccCceEEEEEEECC-----CCcEEEEEEecccccc-CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeE
Confidence            58999999999999999999876     5788999998653211 12234566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          165 CLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      |+||||++ ++|.+++..... ..+...                            .++.++.||+.||+|||++||+||
T Consensus        75 ~~v~e~~~-~~l~~~~~~~~~~~~~~~~----------------------------~~~~~~~qi~~~L~~lH~~~i~H~  125 (285)
T cd07861          75 YLIFEFLS-MDLKKYLDSLPKGQYMDAE----------------------------LVKSYLYQILQGILFCHSRRVLHR  125 (285)
T ss_pred             EEEEecCC-CCHHHHHhcCCCCCcCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeec
Confidence            99999996 688888765432 222222                            224678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||++.......                                                  
T Consensus       126 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------  155 (285)
T cd07861         126 DLKPQNLLIDNKGVIKLADFGLARAFGIPV--------------------------------------------------  155 (285)
T ss_pred             CCCHHHEEEcCCCcEEECcccceeecCCCc--------------------------------------------------
Confidence            999999999999999999999974321100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .......+++.|+|||++.+. .++.++|||||||++|+|++|++||.+...
T Consensus       156 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~  207 (285)
T cd07861         156 ----------------------------RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSE  207 (285)
T ss_pred             ----------------------------ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence                                        001122578899999998765 478999999999999999999999998766


Q ss_pred             HHHHHHHhcCCCCC------------------CCCCCCC--chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          403 EKTLINILKKPLTF------------------PRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       403 ~~~~~~i~~~~~~~------------------p~~~~~~--~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      ......+.......                  +......  ........++.+||.+||+.||.+|||+.    +++.||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~----~ll~~~  283 (285)
T cd07861         208 IDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAK----KALNHP  283 (285)
T ss_pred             HHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHH----HHhcCC
Confidence            54443332211000                  0000000  00001234578999999999999999998    999999


Q ss_pred             Cc
Q 010140          463 FF  464 (517)
Q Consensus       463 ~f  464 (517)
                      ||
T Consensus       284 ~~  285 (285)
T cd07861         284 YF  285 (285)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=4.5e-43  Score=343.54  Aligned_cols=254  Identities=27%  Similarity=0.400  Sum_probs=198.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||+|++..+..  ......+..|+.++++++||||+++++++...+.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   73 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLL-----TRRILAVKVIPLDIT--VELQKQIMSELEILYKCDSPYIIGFYGAFFVENR   73 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcC-----CCcEEEEEEEecCCC--hHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCE
Confidence            468999999999999999999876     678899999865421  1233557779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .++||||+++++|..+.      .+++.                            .+..++.||+.||+|||++||+|+
T Consensus        74 ~~lv~e~~~~~~l~~~~------~~~~~----------------------------~~~~~~~qi~~~l~~lH~~~i~H~  119 (279)
T cd06619          74 ISICTEFMDGGSLDVYR------KIPEH----------------------------VLGRIAVAVVKGLTYLWSLKILHR  119 (279)
T ss_pred             EEEEEecCCCCChHHhh------cCCHH----------------------------HHHHHHHHHHHHHHHHHHCCEeeC
Confidence            99999999999986431      11111                            123678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.++|+|||++.....                                                    
T Consensus       120 dlkp~Nill~~~~~~~l~dfg~~~~~~~----------------------------------------------------  147 (279)
T cd06619         120 DVKPSNMLVNTRGQVKLCDFGVSTQLVN----------------------------------------------------  147 (279)
T ss_pred             CCCHHHEEECCCCCEEEeeCCcceeccc----------------------------------------------------
Confidence            9999999999999999999999832210                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh-
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~-  402 (517)
                                                  ......+||..|+|||++.+..++.++|||||||++|+|++|..||..... 
T Consensus       148 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~  199 (279)
T cd06619         148 ----------------------------SIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKN  199 (279)
T ss_pred             ----------------------------ccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccc
Confidence                                        011234689999999999988899999999999999999999999975321 


Q ss_pred             ------HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          403 ------EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       403 ------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                            ......+......  .....     ....++.+||.+||+.||++||++.    |+++||||...+-
T Consensus       200 ~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~li~~~l~~~P~~Rp~~~----eil~~~~~~~~~~  261 (279)
T cd06619         200 QGSLMPLQLLQCIVDEDPP--VLPVG-----QFSEKFVHFITQCMRKQPKERPAPE----NLMDHPFIVQYND  261 (279)
T ss_pred             ccccchHHHHHHHhccCCC--CCCCC-----cCCHHHHHHHHHHhhCChhhCCCHH----HHhcCcccccccC
Confidence                  1222222222111  11000     1123589999999999999999997    9999999987653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=4.7e-43  Score=343.24  Aligned_cols=262  Identities=32%  Similarity=0.600  Sum_probs=196.0

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHH---HHHHHhcCCCCccceeeeeecCceeEEE
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME---KVILTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E---~~il~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      .||+|+||.||+|++..     +++.||+|++.+..............|   +.+++..+||||+++++++...+..|+|
T Consensus         1 ~ig~g~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v   75 (278)
T cd05606           1 IIGRGGFGEVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI   75 (278)
T ss_pred             CcccCCCeEEEEEEEec-----CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEE
Confidence            48999999999999876     678999999876432211111112223   3445556899999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||++||+|..++...  ..+++..                            ++.|+.|++.||+|||+++|+||||||
T Consensus        76 ~e~~~g~~L~~~l~~~--~~l~~~~----------------------------~~~~~~ql~~~l~~lH~~~i~H~di~p  125 (278)
T cd05606          76 LDLMNGGDLHYHLSQH--GVFSEAE----------------------------MRFYAAEIILGLEHMHNRFVVYRDLKP  125 (278)
T ss_pred             EecCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEEcCCCCH
Confidence            9999999998887653  2233322                            246789999999999999999999999


Q ss_pred             CceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccc
Q 010140          248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIR  327 (517)
Q Consensus       248 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      +||+++.++.+||+|||++..+..                                                        
T Consensus       126 ~nili~~~~~~kl~dfg~~~~~~~--------------------------------------------------------  149 (278)
T cd05606         126 ANILLDEHGHVRISDLGLACDFSK--------------------------------------------------------  149 (278)
T ss_pred             HHEEECCCCCEEEccCcCccccCc--------------------------------------------------------
Confidence            999999999999999998732210                                                        


Q ss_pred             cccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC---hH
Q 010140          328 EQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN---NE  403 (517)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~---~~  403 (517)
                                              .......|+..|+|||++.+. .++.++||||+||++|+|++|+.||.+..   ..
T Consensus       150 ------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~  205 (278)
T cd05606         150 ------------------------KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH  205 (278)
T ss_pred             ------------------------cCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchH
Confidence                                    001123689999999999754 58999999999999999999999998763   22


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccccCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIRSIK  476 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~~~~  476 (517)
                      .....+.......|...         +.++.++|.+||..||.+|+... ..+.++++||||++++|+.+....
T Consensus       206 ~~~~~~~~~~~~~~~~~---------s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  270 (278)
T cd05606         206 EIDRMTLTMAVELPDSF---------SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQK  270 (278)
T ss_pred             HHHHHhhccCCCCCCcC---------CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCCchHhhhcc
Confidence            32222322223332211         22589999999999999999321 123499999999999999775443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=7.6e-43  Score=344.90  Aligned_cols=258  Identities=24%  Similarity=0.375  Sum_probs=204.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++.+.||+|+||.||+|.+..     +++.||+|.+......   ....+.+|+.+++.++||||+++++.+..+.
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~v~ik~~~~~~~~---~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~   90 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVA-----TGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGD   90 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECC-----CCcEEEEEEEecCCcc---hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC
Confidence            4689999999999999999999876     5678999998754322   2345667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      +.|+||||++|++|.+++...   .+...                            ++..++.|++.||+|||++||+|
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~---~~~~~----------------------------~~~~i~~ql~~aL~~LH~~gi~H  139 (296)
T cd06654          91 ELWVVMEYLAGGSLTDVVTET---CMDEG----------------------------QIAAVCRECLQALEFLHSNQVIH  139 (296)
T ss_pred             EEEEeecccCCCCHHHHHHhc---CCCHH----------------------------HHHHHHHHHHHHHHHHHHCCccc
Confidence            999999999999999988542   12222                            12367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++......                                                  
T Consensus       140 ~dLkp~Nill~~~~~~kl~dfg~~~~~~~~--------------------------------------------------  169 (296)
T cd06654         140 RDIKSDNILLGMDGSVKLTDFGFCAQITPE--------------------------------------------------  169 (296)
T ss_pred             CCCCHHHEEEcCCCCEEECccccchhcccc--------------------------------------------------
Confidence            999999999999999999999987432110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........|++.|+|||.+.+..++.++|||||||++|+|++|+.||.....
T Consensus       170 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~  221 (296)
T cd06654         170 ----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (296)
T ss_pred             ----------------------------ccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                        0011223588999999999988899999999999999999999999988776


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ......+........... .     .....+.+||.+||..||++||++.    ++++||||...
T Consensus       222 ~~~~~~~~~~~~~~~~~~-~-----~~~~~l~~li~~~l~~~p~~Rpt~~----eil~~~~~~~~  276 (296)
T cd06654         222 LRALYLIATNGTPELQNP-E-----KLSAIFRDFLNRCLDMDVEKRGSAK----ELLQHQFLKIA  276 (296)
T ss_pred             HHhHHHHhcCCCCCCCCc-c-----ccCHHHHHHHHHHCcCCcccCcCHH----HHhhChhhhcc
Confidence            544433333221111111 0     1223589999999999999999998    99999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=3.2e-43  Score=358.78  Aligned_cols=292  Identities=17%  Similarity=0.212  Sum_probs=204.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .+..++|++.+.||+|+||.||+|++.......++..||||+++.....  .....+.+|+.+|..+ +||||+++++++
T Consensus        31 ~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~--~~~~~~~~Ei~il~~l~~HpnIv~l~~~~  108 (375)
T cd05104          31 EFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHINIVNLLGAC  108 (375)
T ss_pred             ccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCc--HHHHHHHHHHHHHHHhcCCcceeeeeeee
Confidence            4556789999999999999999998653222235678999998754321  2345677799999999 899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccC-----ccchhhhhhhhhh----------h---hhc--------------
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFG-----ISSAKFVFFLLFF----------F---FYN--------------  206 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~-----~~~~~~~~~~l~~----------~---~~~--------------  206 (517)
                      ..++..|+|||||+||+|.+++.........     .........++..          +   ...              
T Consensus       109 ~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (375)
T cd05104         109 TVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRS  188 (375)
T ss_pred             ccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccc
Confidence            9999999999999999999998764311000     0000000000000          0   000              


Q ss_pred             --CCcc-----------ccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccc
Q 010140          207 --NLGF-----------VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVP  273 (517)
Q Consensus       207 --~~~~-----------~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~  273 (517)
                        ...+           ..........+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~  268 (375)
T cd05104         189 VRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDS  268 (375)
T ss_pred             cccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcc
Confidence              0000           000112334567899999999999999999999999999999999999999999984332100


Q ss_pred             cccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccC
Q 010140          274 KLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINAR  353 (517)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (517)
                      .                                                                            ...
T Consensus       269 ~----------------------------------------------------------------------------~~~  272 (375)
T cd05104         269 N----------------------------------------------------------------------------YVV  272 (375)
T ss_pred             c----------------------------------------------------------------------------ccc
Confidence            0                                                                            000


Q ss_pred             CcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhh
Q 010140          354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVK  432 (517)
Q Consensus       354 ~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~  432 (517)
                      .....++..|+|||++.+..++.++|||||||++|||++ |..||.+......+.+.+.......... ..      ..+
T Consensus       273 ~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~  345 (375)
T cd05104         273 KGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPE-CA------PSE  345 (375)
T ss_pred             cCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCC-CC------CHH
Confidence            112235678999999999899999999999999999997 8999988765544444444332221111 11      125


Q ss_pred             HHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          433 LQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       433 l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +.+||.+||+.||++||++.    |+++
T Consensus       346 l~~li~~cl~~dP~~RPs~~----eil~  369 (375)
T cd05104         346 MYDIMKSCWDADPLKRPTFK----QIVQ  369 (375)
T ss_pred             HHHHHHHHccCChhHCcCHH----HHHH
Confidence            89999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-43  Score=349.61  Aligned_cols=261  Identities=30%  Similarity=0.433  Sum_probs=204.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  159 (517)
                      +....|+++++||+||-+.||++...+      ...||+|.+.... .....+.-+..|+.+|.+| .|.+||+||+|-.
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s~------~~iyalkkv~~~~-~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv  430 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNSD------KQIYALKKVVLLE-ADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEV  430 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecCC------CcchhhhHHHHhh-cCHHHHHHHHHHHHHHHHhcCCceEEEEeeeec
Confidence            345679999999999999999998664      4567777665432 2345567788899999999 5999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .++++||||||- ..||..+|+.......                             .|.+++|..||+.|+.++|..|
T Consensus       431 ~d~~lYmvmE~G-d~DL~kiL~k~~~~~~-----------------------------~~~lk~ywkqML~aV~~IH~~g  480 (677)
T KOG0596|consen  431 TDGYLYMVMECG-DIDLNKILKKKKSIDP-----------------------------DWFLKFYWKQMLLAVKTIHQHG  480 (677)
T ss_pred             cCceEEEEeecc-cccHHHHHHhccCCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999987 6799999887532211                             1234688899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||.||||.|+|+ -.|.+||+|||+|..+.....                                             
T Consensus       481 IVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTT---------------------------------------------  514 (677)
T KOG0596|consen  481 IVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTT---------------------------------------------  514 (677)
T ss_pred             eeecCCCcccEEE-EeeeEEeeeechhcccCcccc---------------------------------------------
Confidence            9999999999998 468999999999954432111                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-----------CCccchHHHHHHHHH
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-----------HGSAVDWWTLGVFLY  388 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-----------~~~~~DiWSlGvil~  388 (517)
                                                     +-...+-+||+.||+||.+....           .+.++||||||||||
T Consensus       515 -------------------------------sI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILY  563 (677)
T KOG0596|consen  515 -------------------------------SIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILY  563 (677)
T ss_pred             -------------------------------ceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHH
Confidence                                           11223458999999999996432           467899999999999


Q ss_pred             HHhhCCCCCCCCCh-HHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          389 EMLYGTTPFKGENN-EKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       389 elltG~~Pf~~~~~-~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +|+.|++||..... ...+..|..-.  +.||......        ++.++++.||.+||++||++.    |||+|||+.
T Consensus       564 qMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~--------~li~~mK~CL~rdPkkR~si~----eLLqhpFl~  631 (677)
T KOG0596|consen  564 QMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPEND--------ELIDVMKCCLARDPKKRWSIP----ELLQHPFLQ  631 (677)
T ss_pred             HHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCch--------HHHHHHHHHHhcCcccCCCcH----HHhcCcccc
Confidence            99999999986553 34444554432  3555544332        389999999999999999998    999999998


Q ss_pred             CC
Q 010140          466 GI  467 (517)
Q Consensus       466 ~~  467 (517)
                      .+
T Consensus       632 ~~  633 (677)
T KOG0596|consen  632 IQ  633 (677)
T ss_pred             cc
Confidence            63

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=7.8e-43  Score=338.13  Aligned_cols=265  Identities=42%  Similarity=0.723  Sum_probs=213.7

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||.|+||.||+|++..     +++.||+|++.............+.+|+.++++++||||+++++.+..+...|+||||+
T Consensus         1 lg~g~~~~vy~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKS-----TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECC-----CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecC
Confidence            6899999999999876     57899999998765554566677888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      ++++|.+++....  .++....                            ..++.||+.||+|||++|++||||+|+||+
T Consensus        76 ~~~~L~~~l~~~~--~~~~~~~----------------------------~~i~~qi~~~L~~lH~~~i~H~di~~~nil  125 (265)
T cd05579          76 PGGDLASLLENVG--SLDEDVA----------------------------RIYIAEIVLALEYLHSNGIIHRDLKPDNIL  125 (265)
T ss_pred             CCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHcCeecCCCCHHHeE
Confidence            9999999887642  2222222                            367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.++|+|||++..........                                                       
T Consensus       126 ~~~~~~~~l~dfg~~~~~~~~~~~~-------------------------------------------------------  150 (265)
T cd05579         126 IDSNGHLKLTDFGLSKVGLVRRQIN-------------------------------------------------------  150 (265)
T ss_pred             EcCCCCEEEEecccchhcccCcccc-------------------------------------------------------
Confidence            9999999999999974322100000                                                       


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhc
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK  411 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~  411 (517)
                                     ............++..|+|||.+.+..++.++|||||||++|+|++|..||......+....+..
T Consensus       151 ---------------~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~  215 (265)
T cd05579         151 ---------------LNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILN  215 (265)
T ss_pred             ---------------cccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhc
Confidence                           00000112234688899999999888889999999999999999999999998888888877776


Q ss_pred             CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       412 ~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      +...++....       ....+.+||.+||+.+|.+||++ ..+.++++||||++++|
T Consensus       216 ~~~~~~~~~~-------~~~~~~~~i~~~l~~~p~~Rpt~-~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         216 GKIEWPEDVE-------VSDEAIDLISKLLVPDPEKRLGA-KSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             CCcCCCcccc-------CCHHHHHHHHHHhcCCHhhcCCC-ccHHHHhcCccccCCCC
Confidence            5555443321       12358999999999999999999 34459999999999998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-44  Score=357.61  Aligned_cols=254  Identities=27%  Similarity=0.424  Sum_probs=202.6

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      -+||+|+||+||.|++++     ++...|||.+.....   ...+-+..|+.+.++|+|.|||+++|.+..++++-+.||
T Consensus       581 vVLGKGTYG~VYA~RD~~-----tqvrIaIKEIpekds---r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFME  652 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMD-----TQVRIAIKEIPEKDS---REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFME  652 (1226)
T ss_pred             EEeecCceeEEEeecccc-----ceeEEEeeecccccc---hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEee
Confidence            479999999999999998     677899999975543   334455669999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      -++||+|..+++..                        +|.+++.   +..+-+|.+||++||.|||++.|||||||-+|
T Consensus       653 qVPGGSLSsLLrsk------------------------WGPlKDN---Estm~fYtkQILeGLkYLHen~IVHRDIKGDN  705 (1226)
T KOG4279|consen  653 QVPGGSLSSLLRSK------------------------WGPLKDN---ESTMNFYTKQILEGLKYLHENKIVHRDIKGDN  705 (1226)
T ss_pred             cCCCCcHHHHHHhc------------------------cCCCccc---hhHHHHHHHHHHHHhhhhhhcceeeccccCCc
Confidence            99999999988763                        1222111   11234789999999999999999999999999


Q ss_pred             eEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          250 VLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       250 ILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      +||+ -.|.+||+|||.++++...                                                        
T Consensus       706 VLvNTySGvlKISDFGTsKRLAgi--------------------------------------------------------  729 (1226)
T KOG4279|consen  706 VLVNTYSGVLKISDFGTSKRLAGI--------------------------------------------------------  729 (1226)
T ss_pred             EEEeeccceEEecccccchhhccC--------------------------------------------------------
Confidence            9997 4789999999998665421                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCCCCCCCCh-HHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTTPFKGENN-EKT  405 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~Pf~~~~~-~~~  405 (517)
                                            +..+.++.||..|||||++...  +|+.++|||||||++.||.||++||..... ...
T Consensus       730 ----------------------nP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAA  787 (1226)
T KOG4279|consen  730 ----------------------NPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAA  787 (1226)
T ss_pred             ----------------------CccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHh
Confidence                                  2234567899999999999765  489999999999999999999999986544 333


Q ss_pred             HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       406 ~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +.++---. ..|+..      .+...+++.||.+|+.+||.+||++.    ++|..||++.-
T Consensus       788 MFkVGmyK-vHP~iP------eelsaeak~FilrcFepd~~~R~sA~----~LL~DpFlq~~  838 (1226)
T KOG4279|consen  788 MFKVGMYK-VHPPIP------EELSAEAKNFILRCFEPDPCDRPSAK----DLLQDPFLQHN  838 (1226)
T ss_pred             hhhhccee-cCCCCc------HHHHHHHHHHHHHHcCCCcccCccHH----HhccCcccccC
Confidence            43332111 112211      13344689999999999999999998    99999999754

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-44  Score=354.57  Aligned_cols=257  Identities=22%  Similarity=0.316  Sum_probs=203.7

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..+.+..+++.+...||+|.||+||+|++.+        .||||+++.+.... .+++.|..|+.++++-+|.||+-++|
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--------dVAVK~Lnv~~pt~-~qlqaFKnEVa~lkkTRH~NIlLFMG  455 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--------DVAVKLLNVDDPTP-EQLQAFKNEVAVLKKTRHENILLFMG  455 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc--------ceEEEEEecCCCCH-HHHHHHHHHHHHHhhcchhhheeeeh
Confidence            5577888899999999999999999999986        48999998765543 47889999999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++..... .||..+|+|.+|+.++.... ..+                            ....++.|++||++|+.|||
T Consensus       456 ~~~~p~~-AIiTqwCeGsSLY~hlHv~e-tkf----------------------------dm~~~idIAqQiaqGM~YLH  505 (678)
T KOG0193|consen  456 ACMNPPL-AIITQWCEGSSLYTHLHVQE-TKF----------------------------DMNTTIDIAQQIAQGMDYLH  505 (678)
T ss_pred             hhcCCce-eeeehhccCchhhhhccchh-hhh----------------------------hHHHHHHHHHHHHHhhhhhh
Confidence            9998887 99999999999999876532 111                            12234589999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      .++|||||||..||++.++++|||+|||++..-...                                            
T Consensus       506 AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w--------------------------------------------  541 (678)
T KOG0193|consen  506 AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRW--------------------------------------------  541 (678)
T ss_pred             hhhhhhhhccccceEEccCCcEEEecccceeeeeee--------------------------------------------
Confidence            999999999999999999999999999998321100                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG  393 (517)
                                    .                  .........|...|||||+++.+   +|+..+|||||||++|||++|
T Consensus       542 --------------~------------------g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg  589 (678)
T KOG0193|consen  542 --------------S------------------GEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTG  589 (678)
T ss_pred             --------------c------------------cccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhC
Confidence                          0                  00112233578899999999754   589999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..||.....+.++..+-++.. .|+......   .+..++++|+..||.+++++||.+.
T Consensus       590 ~lPysi~~~dqIifmVGrG~l-~pd~s~~~s---~~pk~mk~Ll~~C~~~~~~eRP~F~  644 (678)
T KOG0193|consen  590 ELPYSIQNRDQIIFMVGRGYL-MPDLSKIRS---NCPKAMKRLLSDCWKFDREERPLFP  644 (678)
T ss_pred             cCCcCCCChhheEEEeccccc-Cccchhhhc---cCHHHHHHHHHHHHhcCcccCccHH
Confidence            999996655555555544422 222221111   2233699999999999999999997

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-43  Score=368.50  Aligned_cols=271  Identities=23%  Similarity=0.300  Sum_probs=219.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+...+.++.+.||+|+||+||+|+..+...+.....||||.++.....  +...+|++|+++|..|+|||||+|+|++.
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~--~~~~dF~REaeLla~l~H~nIVrLlGVC~  559 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAEN--QARQDFRREAELLAELQHPNIVRLLGVCR  559 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccH--HHHHHHHHHHHHHHhccCCCeEEEEEEEc
Confidence            3566788999999999999999999887665567889999999876543  45678889999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .++.+|||+|||..|||.++|.....+.-....                |-.....+...+...|+.||+.|++||-++.
T Consensus       560 ~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~----------------g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~  623 (774)
T KOG1026|consen  560 EGDPLCMVFEYMDHGDLHEFLRARSPKADKLAS----------------GQDTPPPLSTSQFLHIATQIAAGMEYLSSHH  623 (774)
T ss_pred             cCCeeEEEEEecccccHHHHHHhhCCccccccC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999876433211100                0000122334455689999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +|||||..+|+||.++..|||+|||+++.+....-+                                            
T Consensus       624 FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYY--------------------------------------------  659 (774)
T KOG1026|consen  624 FVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYY--------------------------------------------  659 (774)
T ss_pred             ccccchhhhhceeccceEEEecccccchhhhhhhhh--------------------------------------------
Confidence            999999999999999999999999999654321111                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                      .......-..+|||||.|....|++++||||+||+|||+++ |..||.
T Consensus       660 --------------------------------k~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~  707 (774)
T KOG1026|consen  660 --------------------------------KVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYY  707 (774)
T ss_pred             --------------------------------cccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccc
Confidence                                            00111123568999999999999999999999999999996 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..+.+++..|..+.. .+....       ++.++.+||..||+.+|.+||++.
T Consensus       708 glSn~EVIe~i~~g~l-L~~Pe~-------CP~~vY~LM~~CW~~~P~~RPsF~  753 (774)
T KOG1026|consen  708 GLSNQEVIECIRAGQL-LSCPEN-------CPTEVYSLMLECWNENPKRRPSFK  753 (774)
T ss_pred             ccchHHHHHHHHcCCc-ccCCCC-------CCHHHHHHHHHHhhcCcccCCCHH
Confidence            9999999999998876 332221       223599999999999999999996

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=9.7e-43  Score=341.79  Aligned_cols=238  Identities=16%  Similarity=0.176  Sum_probs=191.6

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec----CceeE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA----SHYSC  165 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~  165 (517)
                      ..||+|++|.||+|+..       ++.||||++.............+.+|+.+|++++||||+++++++.+    ...++
T Consensus        26 ~~i~~g~~~~v~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~   98 (283)
T PHA02988         26 VLIKENDQNSIYKGIFN-------NKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLS   98 (283)
T ss_pred             eEEeeCCceEEEEEEEC-------CEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceE
Confidence            57999999999999874       47899999986544333445677889999999999999999999876    45789


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-Cceecc
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-GIVYRD  244 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~iiHrD  244 (517)
                      +|||||+||+|.+++...  ..+.....                            ..++.|++.||.|||+. +++|||
T Consensus        99 lv~Ey~~~g~L~~~l~~~--~~~~~~~~----------------------------~~i~~~i~~~l~~lH~~~~~~Hrd  148 (283)
T PHA02988         99 LILEYCTRGYLREVLDKE--KDLSFKTK----------------------------LDMAIDCCKGLYNLYKYTNKPYKN  148 (283)
T ss_pred             EEEEeCCCCcHHHHHhhC--CCCChhHH----------------------------HHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999999999999998754  22222222                            36789999999999984 999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+|||++.++.+||+|||+++.+..                                                     
T Consensus       149 lkp~nill~~~~~~kl~dfg~~~~~~~-----------------------------------------------------  175 (283)
T PHA02988        149 LTSVSFLVTENYKLKIICHGLEKILSS-----------------------------------------------------  175 (283)
T ss_pred             CChhhEEECCCCcEEEcccchHhhhcc-----------------------------------------------------
Confidence            999999999999999999999743210                                                     


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ......||+.|+|||++.+  ..++.++|||||||++|||++|..||.+.+.
T Consensus       176 ----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~  227 (283)
T PHA02988        176 ----------------------------PPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT  227 (283)
T ss_pred             ----------------------------ccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH
Confidence                                        0012358899999999976  5689999999999999999999999999888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+.+..+.......+.. ..      .+..+.+||.+||+.||++||++.
T Consensus       228 ~~~~~~i~~~~~~~~~~-~~------~~~~l~~li~~cl~~dp~~Rps~~  270 (283)
T PHA02988        228 KEIYDLIINKNNSLKLP-LD------CPLEIKCIVEACTSHDSIKRPNIK  270 (283)
T ss_pred             HHHHHHHHhcCCCCCCC-Cc------CcHHHHHHHHHHhcCCcccCcCHH
Confidence            88777776544333211 11      123589999999999999999997

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=8.7e-43  Score=341.97  Aligned_cols=277  Identities=23%  Similarity=0.287  Sum_probs=208.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.............||+|.+.....  ......+.+|+.++..++||||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~--~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~   79 (283)
T cd05048           2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE--PKVQQEFRQEAELMSDLQHPNIVCLLGVCTK   79 (283)
T ss_pred             CChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCC--HHHHHHHHHHHHHHHhcCCcccceEEEEEcC
Confidence            44578999999999999999999987644333557899999875422  2334567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|++|||+++|+|.+++.............              .............+..++.||+.||.|||++||
T Consensus        80 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i  145 (283)
T cd05048          80 EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAES--------------GDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHF  145 (283)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCccccccc--------------ccccccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999987643211100000              000000112223345789999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.+||+|||+++.......                                              
T Consensus       146 ~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~----------------------------------------------  179 (283)
T cd05048         146 VHRDLAARNCLVGEGLTVKISDFGLSRDIYSADY----------------------------------------------  179 (283)
T ss_pred             eccccccceEEEcCCCcEEECCCcceeecccccc----------------------------------------------
Confidence            9999999999999999999999999843211000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........+++.|+|||.+.+..++.++|||||||++|||++ |..||.+
T Consensus       180 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~  229 (283)
T cd05048         180 ------------------------------YRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYG  229 (283)
T ss_pred             ------------------------------ccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCC
Confidence                                          001122356889999999988889999999999999999998 9999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ....+....+........  ..      ..+.++.+|+.+||+.||.+||++.    |++++
T Consensus       230 ~~~~~~~~~i~~~~~~~~--~~------~~~~~~~~l~~~c~~~~p~~Rp~~~----~i~~~  279 (283)
T cd05048         230 FSNQEVIEMIRSRQLLPC--PE------DCPARVYALMIECWNEIPARRPRFK----DIHTR  279 (283)
T ss_pred             CCHHHHHHHHHcCCcCCC--cc------cCCHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            888777777665443211  11      1223589999999999999999997    77654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.4e-42  Score=340.40  Aligned_cols=258  Identities=30%  Similarity=0.425  Sum_probs=203.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      -|++.+.||+|+||.||+|.+..     ++..+++|.+.....   .....+.+|+.+++.++||||+++++++..++..
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~-----~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~   77 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKE-----TGVLAAAKVIDTKSE---EELEDYMVEIDILASCDHPNIVKLLDAFYYENNL   77 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECC-----CCeEEEEEEeCCCCH---HHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEE
Confidence            36888999999999999999886     567899999865422   2345566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|..++.... ..+....                            +..++.||+.||.|||+.||+|||
T Consensus        78 ~~v~e~~~~~~l~~~~~~~~-~~l~~~~----------------------------~~~~~~qi~~~L~~LH~~~i~H~d  128 (282)
T cd06643          78 WILIEFCAGGAVDAVMLELE-RPLTEPQ----------------------------IRVVCKQTLEALNYLHENKIIHRD  128 (282)
T ss_pred             EEEEEecCCCcHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeeecC
Confidence            99999999999988765421 1222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+|||++.++.+||+|||++......                                                    
T Consensus       129 lkp~nili~~~~~~kl~dfg~~~~~~~~----------------------------------------------------  156 (282)
T cd06643         129 LKAGNILFTLDGDIKLADFGVSAKNTRT----------------------------------------------------  156 (282)
T ss_pred             CCcccEEEccCCCEEEcccccccccccc----------------------------------------------------
Confidence            9999999999999999999997432100                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                ........|++.|+|||++.     +..++.++|||||||++|+|++|.+||..
T Consensus       157 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  210 (282)
T cd06643         157 --------------------------IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHE  210 (282)
T ss_pred             --------------------------ccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccc
Confidence                                      00112345889999999984     34477899999999999999999999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+..+....+.............      ...++.+||.+||+.||.+||++.    ++++||||+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~~~~  268 (282)
T cd06643         211 LNPMRVLLKIAKSEPPTLAQPSR------WSSEFKDFLKKCLEKNVDARWTTT----QLLQHPFVTVN  268 (282)
T ss_pred             cCHHHHHHHHhhcCCCCCCCccc------cCHHHHHHHHHHccCChhhCcCHH----HHhcCCCEecc
Confidence            87776666665443221111111      122589999999999999999998    99999999854

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.1e-42  Score=341.23  Aligned_cols=257  Identities=28%  Similarity=0.413  Sum_probs=199.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee-
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE-  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~-  159 (517)
                      ..+.|++.+.||.|+||.||+|++..     .++.||+|++....    .....+..|+.+++++ +||||+++++++. 
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~a~K~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHVK-----TGQLAAIKVMDVTE----DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEcC-----CCcEEEEEEEecCh----HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            44789999999999999999999876     67889999986543    2234456688999988 7999999999985 


Q ss_pred             -----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          160 -----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       160 -----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                           .....|+||||+++|+|.+++.......+....                            +..++.||+.||.|
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~qi~~al~~  136 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDW----------------------------IAYICREILRGLAH  136 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence                 356789999999999999988765433332221                            23577899999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+||+++.++.++|+|||++......                                          
T Consensus       137 LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~------------------------------------------  174 (282)
T cd06636         137 LHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT------------------------------------------  174 (282)
T ss_pred             HHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhcc------------------------------------------
Confidence            99999999999999999999999999999987432100                                          


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHH
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~e  389 (517)
                                                          ........|++.|+|||++.     +..++.++|||||||++||
T Consensus       175 ------------------------------------~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~e  218 (282)
T cd06636         175 ------------------------------------VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIE  218 (282)
T ss_pred             ------------------------------------ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHH
Confidence                                                00112346899999999986     3457889999999999999


Q ss_pred             HhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          390 MLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       390 lltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      |++|..||...........+.......  ....     ....++.+||.+||..||.+||++.    ||++||||
T Consensus       219 l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~li~~cl~~~p~~Rp~~~----ell~~~~~  282 (282)
T cd06636         219 MAEGAPPLCDMHPMRALFLIPRNPPPK--LKSK-----KWSKKFIDFIEGCLVKNYLSRPSTE----QLLKHPFI  282 (282)
T ss_pred             HHhCCCCccccCHHhhhhhHhhCCCCC--Cccc-----ccCHHHHHHHHHHhCCChhhCcCHH----HHhcCCCC
Confidence            999999998766554444333321111  1100     1123589999999999999999998    99999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.3e-42  Score=334.83  Aligned_cols=261  Identities=27%  Similarity=0.399  Sum_probs=204.7

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH------HHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL------AIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +|.+.+.||+|+||.||+|.+..     .++.||+|.+.....      ........+.+|+.+++.++||||+++++++
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   75 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNAS-----SGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSS   75 (267)
T ss_pred             CccccceeecCCCeEEEEEEecC-----CCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            47788999999999999999876     567899998854321      1223456778899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ...+..++||||+++++|.+++...  ..++...                            ++.++.|++.||+|||++
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~~~~~l~~~l~~lH~~  125 (267)
T cd06628          76 LDADHLNIFLEYVPGGSVAALLNNY--GAFEETL----------------------------VRNFVRQILKGLNYLHNR  125 (267)
T ss_pred             EeCCccEEEEEecCCCCHHHHHHhc--cCccHHH----------------------------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998664  2222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |++||||||+||+++.++.++|+|||+++........                                           
T Consensus       126 ~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-------------------------------------------  162 (267)
T cd06628         126 GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLS-------------------------------------------  162 (267)
T ss_pred             CcccccCCHHHEEEcCCCCEEecccCCCccccccccc-------------------------------------------
Confidence            9999999999999999999999999998543210000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ...........|+..|+|||.+.+..++.++|||||||++|+|++|+.||.
T Consensus       163 -----------------------------~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  213 (267)
T cd06628         163 -----------------------------TKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFP  213 (267)
T ss_pred             -----------------------------CCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCC
Confidence                                         000011123468899999999998889999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +.+....+..+.....  +......      ...+.++|.+||+.||.+||++.    |+++||||
T Consensus       214 ~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~  267 (267)
T cd06628         214 DCTQLQAIFKIGENAS--PEIPSNI------SSEAIDFLEKTFEIDHNKRPTAA----ELLKHPFL  267 (267)
T ss_pred             CccHHHHHHHHhccCC--CcCCccc------CHHHHHHHHHHccCCchhCcCHH----HHhhCCCC
Confidence            8766555555444211  1111111      22589999999999999999998    99999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=9e-43  Score=344.57  Aligned_cols=258  Identities=24%  Similarity=0.364  Sum_probs=203.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++++.||+|+||.||+|.+..     +++.||+|.+......   ....+..|+.+++.++||||+++++++..++
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   89 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIA-----TGQEVAIKQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGD   89 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECC-----CCCEEEEEEEecCccc---hHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            3789999999999999999999876     6788999998654322   2345667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++....   +...                            .+..++.|++.||.|||+.||+|
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~~---~~~~----------------------------~~~~~~~~l~~~L~~LH~~~i~H  138 (297)
T cd06656          90 ELWVVMEYLAGGSLTDVVTETC---MDEG----------------------------QIAAVCRECLQALDFLHSNQVIH  138 (297)
T ss_pred             EEEEeecccCCCCHHHHHHhCC---CCHH----------------------------HHHHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999999876431   2211                            22367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||++......                                                  
T Consensus       139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~--------------------------------------------------  168 (297)
T cd06656         139 RDIKSDNILLGMDGSVKLTDFGFCAQITPE--------------------------------------------------  168 (297)
T ss_pred             CCCCHHHEEECCCCCEEECcCccceEccCC--------------------------------------------------
Confidence            999999999999999999999987432110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........|++.|+|||.+.+..++.++|||||||++|+|++|..||.+.+.
T Consensus       169 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~  220 (297)
T cd06656         169 ----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (297)
T ss_pred             ----------------------------ccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence                                        0011223588999999999988899999999999999999999999987665


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ......+............      .....+++||.+||..||++||++.    ++++||||+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rps~~----~il~~~~~~~~  275 (297)
T cd06656         221 LRALYLIATNGTPELQNPE------RLSAVFRDFLNRCLEMDVDRRGSAK----ELLQHPFLKLA  275 (297)
T ss_pred             chheeeeccCCCCCCCCcc------ccCHHHHHHHHHHccCChhhCcCHH----HHhcCchhccc
Confidence            4433322222111110000      1123488999999999999999998    99999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=6.4e-43  Score=339.94  Aligned_cols=258  Identities=27%  Similarity=0.447  Sum_probs=201.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+.+.||+|+||.||+|++..     +++.||+|+++....   .....+.+|+.+++.++||||+++++++...
T Consensus         7 ~~~~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~---~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~   78 (267)
T cd06645           7 PQEDFELIQRIGSGTYGDVYKARNVN-----TGELAAIKVIKLEPG---EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR   78 (267)
T ss_pred             cHHHHHHHHHhCCCCCeEEEEEEEcC-----CCcEEEEEEEecCch---hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC
Confidence            34689999999999999999999876     678899999865432   2234456799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++....  .++...                            ++.++.||+.||.|||++||+
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~  128 (267)
T cd06645          79 DKLWICMEFCGGGSLQDIYHVTG--PLSESQ----------------------------IAYVSRETLQGLYYLHSKGKM  128 (267)
T ss_pred             CEEEEEEeccCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999886542  233222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.++|+|||++......                                                 
T Consensus       129 H~dlkp~nili~~~~~~~l~dfg~~~~~~~~-------------------------------------------------  159 (267)
T cd06645         129 HRDIKGANILLTDNGHVKLADFGVSAQITAT-------------------------------------------------  159 (267)
T ss_pred             cCCCCHHHEEECCCCCEEECcceeeeEccCc-------------------------------------------------
Confidence            9999999999999999999999997432210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ........|++.|+|||++.   ...++.++|||||||++|+|++|..||.
T Consensus       160 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~  210 (267)
T cd06645         160 -----------------------------IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             -----------------------------ccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcc
Confidence                                         00112346899999999985   4457889999999999999999999997


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      ..................+.....    ......+.+||.+||..||++||++.    ++++|||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~P~~R~~~~----~ll~~~~  267 (267)
T cd06645         211 DLHPMRALFLMTKSNFQPPKLKDK----MKWSNSFHHFVKMALTKNPKKRPTAE----KLLQHPF  267 (267)
T ss_pred             cccchhhHHhhhccCCCCCccccc----CCCCHHHHHHHHHHccCCchhCcCHH----HHhcCCC
Confidence            766554444443333222211110    01122489999999999999999997    9999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.8e-42  Score=336.28  Aligned_cols=265  Identities=27%  Similarity=0.385  Sum_probs=208.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||.|+||+||+|....     ++..+|+|++.......  ....+.+|+.+|+.++|+||+++++.+...+.
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLP-----NNEKVAIKRIDLEKCQT--SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDE   73 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcC-----CCcEEEEEEeccCCcch--HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCE
Confidence            479999999999999999999876     56789999986543322  45667779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          164 SCLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .|+||||++|++|.+++..... ..+....                            ++.++.||+.||+|||++||+|
T Consensus        74 ~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~ql~~al~~lh~~~i~h  125 (267)
T cd06610          74 LWLVMPYLSGGSLLDIMKSSYPRGGLDEAI----------------------------IATVLKEVLKGLEYLHSNGQIH  125 (267)
T ss_pred             EEEEEeccCCCcHHHHHHHhcccCCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeec
Confidence            9999999999999999876422 2222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||++..+......                                               
T Consensus       126 ~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~-----------------------------------------------  158 (267)
T cd06610         126 RDIKAGNILLGEDGSVKIADFGVSASLADGGDR-----------------------------------------------  158 (267)
T ss_pred             CCCCHHhEEEcCCCCEEEcccchHHHhccCccc-----------------------------------------------
Confidence            999999999999999999999998433211000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                 .........|+..|+|||++... .++.++|+|||||++|+|++|+.||...+
T Consensus       159 ---------------------------~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~  211 (267)
T cd06610         159 ---------------------------TRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP  211 (267)
T ss_pred             ---------------------------cccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC
Confidence                                       00112334689999999999877 68999999999999999999999999887


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+.++.............   .......+.+||.+||..||++||++.    ++++||||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~----~ll~~p~~  267 (267)
T cd06610         212 PMKVLMLTLQNDPPSLETGAD---YKKYSKSFRKMISLCLQKDPSKRPTAE----ELLKHKFF  267 (267)
T ss_pred             hhhhHHHHhcCCCCCcCCccc---cccccHHHHHHHHHHcCCChhhCcCHH----HHhhCCCC
Confidence            776666665543221111110   001223589999999999999999987    99999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-43  Score=368.49  Aligned_cols=272  Identities=29%  Similarity=0.379  Sum_probs=209.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeee-
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEF-  158 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~-  158 (517)
                      +..-+++|.+.|.+|||+.||+|++..     .+..||+|.+-...   ...++.+.+|+.+|++|. |+|||.++|.. 
T Consensus        34 Vg~~~v~V~~vLAEGGFa~VYla~~~~-----~~~~~AlKrm~~~d---e~~L~~v~~EI~~MK~L~gh~nIV~yidss~  105 (738)
T KOG1989|consen   34 VGSHRVTVEKVLAEGGFAQVYLAQDVK-----GGKKYALKRMYVND---EEALNAVKREIDIMKLLSGHKNIVSYIDSSA  105 (738)
T ss_pred             ECCEEEEEEEEEccCCcEEEEEEEecC-----CCceeeeeeeecCC---HHHHHHHHHHHHHHHHhcCCCceeeEecccc
Confidence            455678999999999999999999987     34789999875442   456677788999999996 99999999933 


Q ss_pred             ec------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          159 EA------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       159 ~~------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ..      .-.+.|+||||+||.|.+++..+...++.+.++.                            +|+.|+++||
T Consensus       106 ~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVL----------------------------kIf~dv~~AV  157 (738)
T KOG1989|consen  106 INRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVL----------------------------KIFYDVCEAV  157 (738)
T ss_pred             ccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHH----------------------------HHHHHHHHHH
Confidence            21      1357899999999999999987766667666665                            7789999999


Q ss_pred             HHHHhcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          233 EYLHMMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       233 ~yLH~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ++||...  |||||||-|||||+.+|+.||||||.+.-....+...   ...                            
T Consensus       158 a~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~---~e~----------------------------  206 (738)
T KOG1989|consen  158 AAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSA---QEV----------------------------  206 (738)
T ss_pred             HHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccH---HHH----------------------------
Confidence            9999998  9999999999999999999999999883222111100   000                            


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh---cCCCCCccchHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI---SGQGHGSAVDWWTLGVFL  387 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l---~~~~~~~~~DiWSlGvil  387 (517)
                                                 ..+      .+     .-...-|+.|+|||++   .+.+.+.|+|||||||+|
T Consensus       207 ---------------------------~~v------e~-----eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclL  248 (738)
T KOG1989|consen  207 ---------------------------NYV------EE-----EIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLL  248 (738)
T ss_pred             ---------------------------HHH------HH-----HHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHH
Confidence                                       000      00     0011368999999998   466789999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh----cCCC
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK----RHEF  463 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell----~hp~  463 (517)
                      |-|+....||.+...    ..|+.+.+.+|....-.       ..+.+||..||+.||++||++.+...++.    .+++
T Consensus       249 YkLCy~t~PFe~sg~----laIlng~Y~~P~~p~ys-------~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~~  317 (738)
T KOG1989|consen  249 YKLCYFTTPFEESGK----LAILNGNYSFPPFPNYS-------DRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPCP  317 (738)
T ss_pred             HHHHHhCCCcCcCcc----eeEEeccccCCCCccHH-------HHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCCC
Confidence            999999999987643    45788888888763222       24899999999999999999985443333    4566


Q ss_pred             cCCCC
Q 010140          464 FKGIN  468 (517)
Q Consensus       464 f~~~~  468 (517)
                      +.++.
T Consensus       318 ~~~~~  322 (738)
T KOG1989|consen  318 IPDIY  322 (738)
T ss_pred             ccccc
Confidence            66554

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.5e-42  Score=340.19  Aligned_cols=259  Identities=25%  Similarity=0.377  Sum_probs=206.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++.+.||.|+||.||+|.+..     +++.||+|.+.....   .....+.+|+.+++.++||||+++++++..++
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   89 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVA-----TGQEVAIKQINLQKQ---PKKELIINEILVMKELKNPNIVNFLDSFLVGD   89 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcC-----CCcEEEEEEEecccC---chHHHHHHHHHHHHhcCCCceeeeeeeEecCc
Confidence            3679999999999999999999876     678899999865432   22345677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|..++...   .+++..                            +..++.|++.||+|||++|++|
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~---~l~~~~----------------------------~~~i~~~l~~al~~LH~~~i~H  138 (296)
T cd06655          90 ELFVVMEYLAGGSLTDVVTET---CMDEAQ----------------------------IAAVCRECLQALEFLHANQVIH  138 (296)
T ss_pred             eEEEEEEecCCCcHHHHHHhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            999999999999999887642   222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.+||+|||++......                                                  
T Consensus       139 ~dL~p~Nili~~~~~~kl~dfg~~~~~~~~--------------------------------------------------  168 (296)
T cd06655         139 RDIKSDNVLLGMDGSVKLTDFGFCAQITPE--------------------------------------------------  168 (296)
T ss_pred             CCCCHHHEEECCCCCEEEccCccchhcccc--------------------------------------------------
Confidence            999999999999999999999987432110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........|++.|+|||.+.+..++.++|||||||++|+|++|..||.+.+.
T Consensus       169 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~  220 (296)
T cd06655         169 ----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (296)
T ss_pred             ----------------------------cccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                        0011223588999999999988899999999999999999999999998877


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ......+............      .....+.+||.+||..||.+||++.    +++.||||+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rpt~~----~il~~~~~~~~~  276 (296)
T cd06655         221 LRALYLIATNGTPELQNPE------KLSPIFRDFLNRCLEMDVEKRGSAK----ELLQHPFLKLAK  276 (296)
T ss_pred             HHHHHHHHhcCCcccCCcc------cCCHHHHHHHHHHhhcChhhCCCHH----HHhhChHhhhcc
Confidence            6655555433221111111      1223589999999999999999998    999999998543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1e-42  Score=336.80  Aligned_cols=255  Identities=36%  Similarity=0.659  Sum_probs=205.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||.|+||.||+|++..     +++.||+|++.+...........+.+|+.++++++||||+++++.+..+...
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRD-----TKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEcc-----CCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeE
Confidence            58999999999999999999876     6788999999876554445567788899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||++|++|..++...  ..+.....                            ..++.||+.||.|||++|++|+|
T Consensus        76 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~----------------------------~~~~~~i~~~l~~lh~~~i~h~d  125 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQK--VKFSEEQV----------------------------KFWICEIVLALEYLHSKGIIHRD  125 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhc--CCcCHHHH----------------------------HHHHHHHHHHHHHHHhCCeeccC
Confidence            9999999999999988664  22322222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++......                                                    
T Consensus       126 l~~~nil~~~~~~~~l~d~~~~~~~~~~----------------------------------------------------  153 (258)
T cd05578         126 IKPDNILLDEQGHVHITDFNIATKVTPD----------------------------------------------------  153 (258)
T ss_pred             CCHHHeEEcCCCCEEEeecccccccCCC----------------------------------------------------
Confidence            9999999999999999999987432110                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh--
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN--  402 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~--  402 (517)
                                                 .......|+..|+|||.+.+..++.++|+|||||++|+|++|..||...+.  
T Consensus       154 ---------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  206 (258)
T cd05578         154 ---------------------------TLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI  206 (258)
T ss_pred             ---------------------------ccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccH
Confidence                                       001223578899999999988899999999999999999999999997764  


Q ss_pred             HHHHHHHhc-CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 EKTLINILK-KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 ~~~~~~i~~-~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ...+..... .....|..   .      +.++.++|.+||..||.+||++.  .+|+++||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~i~~~l~~~p~~R~~~~--~~~l~~~~~~  258 (258)
T cd05578         207 RDQIRAKQETADVLYPAT---W------STEAIDAINKLLERDPQKRLGDN--LKDLKNHPYF  258 (258)
T ss_pred             HHHHHHHhccccccCccc---C------cHHHHHHHHHHccCChhHcCCcc--HHHHhcCCCC
Confidence            222223222 22222221   1      13589999999999999999992  3399999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-44  Score=341.00  Aligned_cols=266  Identities=27%  Similarity=0.420  Sum_probs=211.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC--CCC----cc
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD--HPF----LP  152 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--Hpn----Iv  152 (517)
                      +....++|.+.+.+|+|+||.|..|.++.     ++..||||+++.-    ....+....|+.+|.++.  .|+    +|
T Consensus        84 gD~l~~Ry~i~~~lGeGtFGkV~ec~D~~-----~~~~vAlKIik~V----~kYreAa~iEi~vLqki~~~DP~g~~rcv  154 (415)
T KOG0671|consen   84 GDILTNRYEIVDLLGEGTFGKVVECWDRE-----TKEHVALKIIKNV----DKYREAALIEIEVLQKINESDPNGKFRCV  154 (415)
T ss_pred             ccccccceehhhhhcCCcccceEEEeecC-----CCceehHHHHHHH----HHHhhHHHHHHHHHHHHHhcCCCCceEEE
Confidence            44557899999999999999999999987     5789999999643    244455566999999993  333    78


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      .+.++|+-.++.|+|+|.+ |-++++++..+....+++..+                            |.|+.||+.++
T Consensus       155 ~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~i----------------------------r~m~~QL~~sv  205 (415)
T KOG0671|consen  155 QMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHI----------------------------RHMGYQLLESV  205 (415)
T ss_pred             eeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHH----------------------------HHHHHHHHHHH
Confidence            8899999999999999999 889999999877777776555                            47899999999


Q ss_pred             HHHHhcCceeccCCCCceEEcc--------------------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccC
Q 010140          233 EYLHMMGIVYRDLKPENVLVRE--------------------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCS  292 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~--------------------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (517)
                      +|||+.+++|.||||||||+..                    +-.|+|+|||.|..-                       
T Consensus       206 ~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~-----------------------  262 (415)
T KOG0671|consen  206 AFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFD-----------------------  262 (415)
T ss_pred             HHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCccee-----------------------
Confidence            9999999999999999999932                    235899999987321                       


Q ss_pred             CCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC
Q 010140          293 IPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ  372 (517)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~  372 (517)
                                                                                ....++++.|..|+|||++.+-
T Consensus       263 ----------------------------------------------------------~e~hs~iVsTRHYRAPEViLgL  284 (415)
T KOG0671|consen  263 ----------------------------------------------------------HEHHSTIVSTRHYRAPEVILGL  284 (415)
T ss_pred             ----------------------------------------------------------ccCcceeeeccccCCchheecc
Confidence                                                                      1223567899999999999999


Q ss_pred             CCCccchHHHHHHHHHHHhhCCCCCCCCChHH---HHHHHhcCC------------------CCCCCCCCCC--------
Q 010140          373 GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK---TLINILKKP------------------LTFPRIGVSS--------  423 (517)
Q Consensus       373 ~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~---~~~~i~~~~------------------~~~p~~~~~~--------  423 (517)
                      +++.++||||+||||+||++|...|.+.++.+   ++++|+...                  +.+|......        
T Consensus       285 GwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~  364 (415)
T KOG0671|consen  285 GWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEP  364 (415)
T ss_pred             CcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcC
Confidence            99999999999999999999999999877655   455554311                  1111111110        


Q ss_pred             c--------hhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          424 S--------KEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       424 ~--------~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .        ....+..++.|||++||..||.+|+|+.    |+|.||||+..
T Consensus       365 ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~----EAL~HpFF~~~  412 (415)
T KOG0671|consen  365 CKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLR----EALSHPFFARL  412 (415)
T ss_pred             CccHHHHhccCcHHHhHHHHHHHHHHccCccccccHH----HHhcCHHhhcC
Confidence            0        0013345689999999999999999998    99999999864

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.2e-42  Score=346.86  Aligned_cols=267  Identities=25%  Similarity=0.336  Sum_probs=186.0

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee--cCceeEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE--ASHYSCL  166 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--~~~~~~l  166 (517)
                      ..+||+|+||.||+|+.+..   .+++.||+|.+.....     ...+.+|+.+|+.++||||+++++++.  .+..+|+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~---~~~~~~a~k~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~l   77 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDG---KDEKEYALKQIEGTGI-----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWL   77 (317)
T ss_pred             ceEeccCCCeeEEEEEecCC---CccceEEEEEecCCCC-----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEE
Confidence            36899999999999997652   2457899999875421     234556999999999999999999884  4567899


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      ||||+. ++|.+++..........                     .........++.++.||+.||.|||++||+|||||
T Consensus        78 v~e~~~-~~l~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlk  135 (317)
T cd07867          78 LFDYAE-HDLWHIIKFHRASKANK---------------------KPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLK  135 (317)
T ss_pred             EEeeeC-CcHHHHHHhhhccccCC---------------------CCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC
Confidence            999995 58888775432111000                     00011222345788999999999999999999999


Q ss_pred             CCceEE----ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          247 PENVLV----REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       247 p~NILl----~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |+|||+    +.++.+||+|||+++.......                                                
T Consensus       136 p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~------------------------------------------------  167 (317)
T cd07867         136 PANILVMGEGPERGRVKIADMGFARLFNSPLK------------------------------------------------  167 (317)
T ss_pred             HHHEEEccCCCCCCcEEEeeccceeccCCCcc------------------------------------------------
Confidence            999999    4567999999999854321000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                 .........||+.|+|||++.+. .++.++|||||||++|||++|++||....
T Consensus       168 ---------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~  220 (317)
T cd07867         168 ---------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             ---------------------------cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccccc
Confidence                                       00011234689999999999874 47999999999999999999999997543


Q ss_pred             hH---------HHHHHHhcCC--------------CCCCCC---------CCCCch------hHHhhhhHHHHHHHhccC
Q 010140          402 NE---------KTLINILKKP--------------LTFPRI---------GVSSSK------EFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       402 ~~---------~~~~~i~~~~--------------~~~p~~---------~~~~~~------~~~~~~~l~dLi~~~L~~  443 (517)
                      ..         ..+..+....              ..++..         ......      .......+.+||.+||+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~  300 (317)
T cd07867         221 EDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTM  300 (317)
T ss_pred             ccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhcc
Confidence            21         1111111100              000000         000000      001123478999999999


Q ss_pred             CcccccCCCCChHHhhcCCCc
Q 010140          444 NPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ||.+|||+.    |+|+||||
T Consensus       301 dP~~R~t~~----e~l~hp~f  317 (317)
T cd07867         301 DPTKRITSE----QALQDPYF  317 (317)
T ss_pred             CcccccCHH----HHhcCCCC
Confidence            999999998    99999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=3.2e-42  Score=341.80  Aligned_cols=277  Identities=21%  Similarity=0.230  Sum_probs=198.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCC-----------CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMV-----------GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP  149 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~-----------~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp  149 (517)
                      +..++|++.++||+|+||.||+|.+.....           ...+..||+|++.....  ......+.+|+.+|.+++||
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~   79 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN--KNARNDFLKEVKILSRLKDP   79 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC--HHHHHHHHHHHHHHhhcCCC
Confidence            345789999999999999999998754221           11345799999875421  23345677899999999999


Q ss_pred             CccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          150 FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       150 nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      ||+++++++.+.+..|+||||+++|+|.+++................           .............+..++.||+
T Consensus        80 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~i~  148 (304)
T cd05096          80 NIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAV-----------PPAHCLPAISYSSLLHVALQIA  148 (304)
T ss_pred             CeeEEEEEEecCCceEEEEecCCCCcHHHHHHhcccccccccccccc-----------ccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999986642211111000000           0000001112233457899999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      .||.|||++||+||||||+|||++.++.+||+|||+++.......                                   
T Consensus       149 ~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~-----------------------------------  193 (304)
T cd05096         149 SGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDY-----------------------------------  193 (304)
T ss_pred             HHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCce-----------------------------------
Confidence            999999999999999999999999999999999999843221000                                   


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                                                               ........++..|+|||++.+..++.++|||||||++||
T Consensus       194 -----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  232 (304)
T cd05096         194 -----------------------------------------YRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWE  232 (304)
T ss_pred             -----------------------------------------eEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHH
Confidence                                                     001122346788999999998889999999999999999


Q ss_pred             Hhh--CCCCCCCCChHHHHHHHhc---CC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          390 MLY--GTTPFKGENNEKTLINILK---KP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       390 llt--G~~Pf~~~~~~~~~~~i~~---~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |++  +..||.+.+..+.+..+..   ..  ...+....      ..+..+.+||.+||..||++||++.
T Consensus       233 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~cl~~~p~~RPs~~  296 (304)
T cd05096         233 ILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPP------PCPQGLYELMLQCWSRDCRERPSFS  296 (304)
T ss_pred             HHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCC------CCCHHHHHHHHHHccCCchhCcCHH
Confidence            986  6788887766655444322   11  01111111      1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=2.9e-42  Score=333.05  Aligned_cols=256  Identities=26%  Similarity=0.457  Sum_probs=207.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+++...     .++.||+|.+....... .....+.+|+.+++.++||||+++++++...++.
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~-----~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKE-----DGKQYVIKEINISKMSP-KEREESRKEVAVLSNMKHPNIVQYQESFEENGNL   74 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcC-----CCCEEEEEEEEhHhCCh-HHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeE
Confidence            58999999999999999999876     57889999987543221 2335667799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|.+++.......++....                            ..++.||+.||.|||++|++|+|
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~l~~lh~~~i~h~~  126 (256)
T cd08218          75 YIVMDYCEGGDLYKKINAQRGVLFPEDQI----------------------------LDWFVQICLALKHVHDRKILHRD  126 (256)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCEecCC
Confidence            99999999999999887543222322222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |+|+|||++.++.++|+|||++.......                                                   
T Consensus       127 l~~~nil~~~~~~~~l~d~~~~~~~~~~~---------------------------------------------------  155 (256)
T cd08218         127 IKSQNIFLTKDGTIKLGDFGIARVLNSTV---------------------------------------------------  155 (256)
T ss_pred             CCHHHEEEcCCCCEEEeeccceeecCcch---------------------------------------------------
Confidence            99999999999999999999884322100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|++.|+|||++.+..++.++|+|||||++|+|++|..||...+..+
T Consensus       156 ---------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~  208 (256)
T cd08218         156 ---------------------------ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKN  208 (256)
T ss_pred             ---------------------------hhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHH
Confidence                                       00112357889999999998889999999999999999999999999888777


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+..+.....  ...      ...++.++|.+||+.+|.+||++.    ++++||||
T Consensus       209 ~~~~~~~~~~~~~--~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~vl~~~~~  256 (256)
T cd08218         209 LVLKIIRGSYPPV--SSH------YSYDLRNLVSQLFKRNPRDRPSVN----SILEKNFI  256 (256)
T ss_pred             HHHHHhcCCCCCC--ccc------CCHHHHHHHHHHhhCChhhCcCHH----HHhhCcCC
Confidence            7777765543211  111      122589999999999999999998    99999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.3e-42  Score=334.98  Aligned_cols=253  Identities=19%  Similarity=0.207  Sum_probs=197.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|.++...  ..+..||+|.++....  ......+.+|+.++++++||||+++++++..+
T Consensus         3 ~~~~~~~~~~ig~G~fg~V~~~~~~~~~--~~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   78 (266)
T cd05064           3 DNKSIKIERILGTGRFGELCRGCLKLPS--KRELPVAIHTLRAGCS--DKQRRGFLAEALTLGQFDHSNIVRLEGVITRG   78 (266)
T ss_pred             chHHeEEeeeecccCCCeEEEEEEecCC--CceeeEEEEecCCCCC--HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC
Confidence            4567999999999999999999876421  1457899999875422  12345677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++|+|.+++.... ..+++..                            ++.++.||+.||+|||++|++
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~----------------------------~~~~~~~i~~al~~lH~~~ii  129 (266)
T cd05064          79 NTMMIVTEYMSNGALDSFLRKHE-GQLVAGQ----------------------------LMGMLPGLASGMKYLSEMGYV  129 (266)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEe
Confidence            99999999999999999887542 1222222                            237789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.++++|||.+.......                                                
T Consensus       130 H~dikp~nili~~~~~~~l~dfg~~~~~~~~~------------------------------------------------  161 (266)
T cd05064         130 HKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA------------------------------------------------  161 (266)
T ss_pred             eccccHhhEEEcCCCcEEECCCcccccccccc------------------------------------------------
Confidence            99999999999999999999999863211000                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+.
T Consensus       162 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~  212 (266)
T cd05064         162 -----------------------------IYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             -----------------------------hhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence                                         000112235678999999999889999999999999999775 99999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..+....+..+.. .+.. ..      .+..+.+++.+||+.+|.+||++.
T Consensus       213 ~~~~~~~~~~~~~~-~~~~-~~------~~~~~~~li~~c~~~~p~~RP~~~  256 (266)
T cd05064         213 SGQDVIKAVEDGFR-LPAP-RN------CPNLLHQLMLDCWQKERGERPRFS  256 (266)
T ss_pred             CHHHHHHHHHCCCC-CCCC-CC------CCHHHHHHHHHHcCCCchhCCCHH
Confidence            87777666654422 2211 11      122489999999999999999997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=4.7e-42  Score=331.63  Aligned_cols=256  Identities=29%  Similarity=0.441  Sum_probs=208.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++++.||.|+||.||.++...     +++.+++|.+....... ....++.+|+.++++++|+||+++++++.+.+.+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~-----~~~~~~~k~~~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   74 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTE-----DDSLVVWKEVNLTRLSE-KERRDALNEIVILSLLQHPNIIAYYNHFMDDNTL   74 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcC-----CCcEEEEEEEeecccch-hHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeE
Confidence            58999999999999999999876     67889999876543221 3345567799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++|||||++|+|.+++.......++....                            ..++.|++.||.|||+.|++|||
T Consensus        75 ~~~~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~l~~lh~~~i~h~d  126 (256)
T cd08221          75 LIEMEYANGGTLYDKIVRQKGQLFEEEMV----------------------------LWYLFQIVSAVSYIHKAGILHRD  126 (256)
T ss_pred             EEEEEecCCCcHHHHHHhccccCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCccccC
Confidence            99999999999999987653333333222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.+||+|||++.......                                                   
T Consensus       127 l~p~ni~~~~~~~~kl~d~~~~~~~~~~~---------------------------------------------------  155 (256)
T cd08221         127 IKTLNIFLTKAGLIKLGDFGISKILGSEY---------------------------------------------------  155 (256)
T ss_pred             CChHhEEEeCCCCEEECcCcceEEccccc---------------------------------------------------
Confidence            99999999999999999999974322100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|++.|+|||++.+..++.++|||||||++|+|++|..||......+
T Consensus       156 ---------------------------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~  208 (256)
T cd08221         156 ---------------------------SMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN  208 (256)
T ss_pred             ---------------------------ccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence                                       01123468999999999998888999999999999999999999999888888


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+..+......  .      ....++.++|.+||..||.+||++.    ++++|||+
T Consensus       209 ~~~~~~~~~~~~~~--~------~~~~~~~~~i~~~l~~~p~~R~s~~----~ll~~~~l  256 (256)
T cd08221         209 LVVKIVQGNYTPVV--S------VYSSELISLVHSLLQQDPEKRPTAD----EVLDQPLL  256 (256)
T ss_pred             HHHHHHcCCCCCCc--c------ccCHHHHHHHHHHcccCcccCCCHH----HHhhCcCC
Confidence            77777765433221  1      1123589999999999999999998    99999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=6.5e-42  Score=337.32  Aligned_cols=259  Identities=27%  Similarity=0.385  Sum_probs=200.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      ..++|.+.+.||+|+||.||+|....     +++.+|+|++.....    ....+..|+.++.++ +||||+++++++..
T Consensus        20 ~~~~y~~~~~l~~g~~~~vy~~~~~~-----~~~~~aik~~~~~~~----~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          20 PTDTWEIIETIGKGTYGKVYKVTNKK-----DGSLAAVKILDPISD----VDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             CCCCeEEEEEeecCCCeEEEEEEECC-----CCCEEEEEEeccccc----HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            45789999999999999999999876     678899999865321    223455688899988 89999999999864


Q ss_pred             C-----ceeEEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          161 S-----HYSCLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       161 ~-----~~~~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      .     +..|+||||++||+|.+++.....  ..+.+.                            .++.++.|++.||+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~----------------------------~~~~~~~qi~~al~  142 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEA----------------------------MISYILYGALLGLQ  142 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHH----------------------------HHHHHHHHHHHHHH
Confidence            3     468999999999999998764321  122221                            22467899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++||+||||||+||+++.++.+||+|||++.......                                        
T Consensus       143 ~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~----------------------------------------  182 (291)
T cd06639         143 HLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTR----------------------------------------  182 (291)
T ss_pred             HHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhccccc----------------------------------------
Confidence            9999999999999999999999999999999974322100                                        


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-----CCccchHHHHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-----HGSAVDWWTLGVFLY  388 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-----~~~~~DiWSlGvil~  388 (517)
                                                            .......|+..|+|||++....     ++.++|||||||++|
T Consensus       183 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~  224 (291)
T cd06639         183 --------------------------------------LRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAI  224 (291)
T ss_pred             --------------------------------------ccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHH
Confidence                                                  0011235888999999986532     678999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +|++|++||........+..+............      .....+.+||.+||+.||++||++.    |+++||||+
T Consensus       225 el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~~p~~Rps~~----~il~~~~~~  291 (291)
T cd06639         225 ELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPE------KWCRSFNHFISQCLIKDFEARPSVT----HLLEHPFIK  291 (291)
T ss_pred             HHhhCCCCCCCCcHHHHHHHHhcCCCCCCCccc------ccCHHHHHHHHHHhhcChhhCcCHH----HHhcCcccC
Confidence            999999999887766666665544321111110      1122489999999999999999998    999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=3.2e-42  Score=332.52  Aligned_cols=255  Identities=29%  Similarity=0.449  Sum_probs=204.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+.+.     +++.|++|.+.....     ...+.+|+.+++.++||||+++++++..+.
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~-----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~   71 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKE-----TGQVVAIKVVPVEED-----LQEIIKEISILKQCDSPYIVKYYGSYFKNT   71 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcC-----CCcEEEEEEeecHHH-----HHHHHHHHHHHHhCCCCcEeeeeeeeecCC
Confidence            3689999999999999999999886     568899999976532     456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|++|||+++++|.+++.... ..++..                            .++.++.||+.||.|||+.||+|
T Consensus        72 ~~~l~~e~~~~~~L~~~l~~~~-~~l~~~----------------------------~~~~~~~~l~~~l~~lh~~~i~H  122 (256)
T cd06612          72 DLWIVMEYCGAGSVSDIMKITN-KTLTEE----------------------------EIAAILYQTLKGLEYLHSNKKIH  122 (256)
T ss_pred             cEEEEEecCCCCcHHHHHHhCc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999999886532 222222                            22367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||+|+||+++.++.++|+|||++......                                                  
T Consensus       123 ~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~--------------------------------------------------  152 (256)
T cd06612         123 RDIKAGNILLNEEGQAKLADFGVSGQLTDT--------------------------------------------------  152 (256)
T ss_pred             CCCCcceEEECCCCcEEEcccccchhcccC--------------------------------------------------
Confidence            999999999999999999999998432210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........|+..|+|||++.+..++.++|||||||++|+|++|+.||.....
T Consensus       153 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~  204 (256)
T cd06612         153 ----------------------------MAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP  204 (256)
T ss_pred             ----------------------------ccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch
Confidence                                        0011223578899999999988899999999999999999999999987766


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ......+............      .....+.++|.+||+.||++||++.    |++.||||
T Consensus       205 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~l~~~P~~Rps~~----~il~~~~~  256 (256)
T cd06612         205 MRAIFMIPNKPPPTLSDPE------KWSPEFNDFVKKCLVKDPEERPSAI----QLLQHPFI  256 (256)
T ss_pred             hhhhhhhccCCCCCCCchh------hcCHHHHHHHHHHHhcChhhCcCHH----HHhcCCCC
Confidence            5544443332111111000      1123589999999999999999998    99999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-44  Score=350.20  Aligned_cols=263  Identities=32%  Similarity=0.459  Sum_probs=218.9

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      .+.||+|.||+||-|+++.     +++.||||++.+..... ++..++..|+.||..++||.||.|...|+..+.+++||
T Consensus       569 devLGSGQFG~VYgg~hRk-----tGrdVAvKvIdKlrFp~-kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVM  642 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRK-----TGRDVAVKVIDKLRFPT-KQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVM  642 (888)
T ss_pred             HhhccCCcceeeecceecc-----cCceeeeeeeecccCCC-chHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEe
Confidence            4689999999999999998     78999999998776543 33467788999999999999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      |-+ .||+.+.+......++++...+                            +++.||+.||.|||-+||+|+|||||
T Consensus       643 EKl-~GDMLEMILSsEkgRL~er~Tk----------------------------FlvtQIL~ALr~LH~knIvHCDLKPE  693 (888)
T KOG4236|consen  643 EKL-HGDMLEMILSSEKGRLPERITK----------------------------FLVTQILVALRYLHFKNIVHCDLKPE  693 (888)
T ss_pred             hhh-cchHHHHHHHhhcccchHHHHH----------------------------HHHHHHHHHHHHhhhcceeeccCCch
Confidence            999 6677777766555666554444                            56799999999999999999999999


Q ss_pred             ceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          249 NVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       249 NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      |||+....   ++||||||+|+.+..                                                      
T Consensus       694 NVLLas~~~FPQvKlCDFGfARiIgE------------------------------------------------------  719 (888)
T KOG4236|consen  694 NVLLASASPFPQVKLCDFGFARIIGE------------------------------------------------------  719 (888)
T ss_pred             heeeccCCCCCceeeccccceeecch------------------------------------------------------
Confidence            99997543   799999999976542                                                      


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT  405 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~  405 (517)
                                               ..-..+.+|||.|+|||+++.+.|+..-|+||+|||+|--+.|..||....  ++
T Consensus       720 -------------------------ksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdE--dI  772 (888)
T KOG4236|consen  720 -------------------------KSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDE--DI  772 (888)
T ss_pred             -------------------------hhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCcc--ch
Confidence                                     112356789999999999999999999999999999999999999997543  44


Q ss_pred             HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC-CcccccCCC
Q 010140          406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI-NWALIRSIK  476 (517)
Q Consensus       406 ~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~-~~~~~~~~~  476 (517)
                      -.+|......+|...+.     +....+.|||..+|+..-.+|.+..    +.|.|||+++- -|..++..+
T Consensus       773 ndQIQNAaFMyPp~PW~-----eis~~AidlIn~LLqVkm~kRysvd----k~lsh~Wlq~yq~w~DLRelE  835 (888)
T KOG4236|consen  773 NDQIQNAAFMYPPNPWS-----EISPEAIDLINNLLQVKMRKRYSVD----KSLSHPWLQDYQTWLDLRELE  835 (888)
T ss_pred             hHHhhccccccCCCchh-----hcCHHHHHHHHHHHHHHHHHhcchH----hhccchhhhcchHHHHHHHHH
Confidence            45666666777765443     3445689999999999999999998    99999999974 577776543

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-43  Score=353.70  Aligned_cols=264  Identities=22%  Similarity=0.315  Sum_probs=214.0

Q ss_pred             HHhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccc
Q 010140           74 LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPT  153 (517)
Q Consensus        74 ~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~  153 (517)
                      +..+.|++.-++..+.++||+|+||.||+|+.+...... ...||+|..+.+....+.....+..|.++|+.++|||||+
T Consensus       147 I~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~-~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr  225 (474)
T KOG0194|consen  147 IPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFK-VVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVR  225 (474)
T ss_pred             ccccccEEeccCccccceeecccccEEEEEEEEecCCce-eeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            445667777888899999999999999999988643211 1228999998644455677888999999999999999999


Q ss_pred             eeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          154 LYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       154 l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      +||+......+|||||+|+||+|.++|++.+. .++..+.                            ..++.+.+.||+
T Consensus       226 ~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek----------------------------~~~~~~AA~Gl~  276 (474)
T KOG0194|consen  226 FYGVAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEK----------------------------LRFCYDAARGLE  276 (474)
T ss_pred             EEEEEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHH----------------------------HHHHHHHHhHHH
Confidence            99999999999999999999999999998753 2333222                            257889999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++++|||||..+|+|++.++.+||+|||+++.......                                       
T Consensus       277 YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~---------------------------------------  317 (474)
T KOG0194|consen  277 YLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVM---------------------------------------  317 (474)
T ss_pred             HHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceee---------------------------------------
Confidence            99999999999999999999999999999999843220000                                       


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-  392 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-  392 (517)
                                                             ......-...|+|||.+....|+.++|||||||++||+++ 
T Consensus       318 ---------------------------------------~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~  358 (474)
T KOG0194|consen  318 ---------------------------------------KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFEN  358 (474)
T ss_pred             ---------------------------------------ccccccCcceecChhhhccCccccccchhheeeeEEeeecc
Confidence                                                   0000123468999999999899999999999999999998 


Q ss_pred             CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |..||.+....++..+|.......+....       .+..+..++.+||..||++||++.
T Consensus       359 g~~Py~g~~~~~v~~kI~~~~~r~~~~~~-------~p~~~~~~~~~c~~~~p~~R~tm~  411 (474)
T KOG0194|consen  359 GAEPYPGMKNYEVKAKIVKNGYRMPIPSK-------TPKELAKVMKQCWKKDPEDRPTMS  411 (474)
T ss_pred             CCCCCCCCCHHHHHHHHHhcCccCCCCCC-------CHHHHHHHHHHhccCChhhccCHH
Confidence            89999999999999999665554443331       123588999999999999999996

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=7.4e-42  Score=336.40  Aligned_cols=269  Identities=41%  Similarity=0.728  Sum_probs=207.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      +|++.+.||+|+||.||+|++.....  .++.||||++.+..... .....++..|+.++..+ +||||+++++.+..+.
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~--~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~   78 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHD--AGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT   78 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEecccc--CCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC
Confidence            48899999999999999998764322  46789999997654322 23445677899999999 6999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++...  ..+...                            .++.++.|++.||.|||+.|++|
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~----------------------------~~~~~~~ql~~~l~~lH~~~~~H  128 (288)
T cd05583          79 KLHLILDYVNGGELFTHLYQR--EHFTES----------------------------EVRVYIAEIVLALDHLHQLGIIY  128 (288)
T ss_pred             EEEEEEecCCCCcHHHHHhhc--CCcCHH----------------------------HHHHHHHHHHHHHHHHHHCCeec
Confidence            999999999999999887643  122222                            22467889999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||+++......                                                 
T Consensus       129 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~-------------------------------------------------  159 (288)
T cd05583         129 RDIKLENILLDSEGHVVLTDFGLSKEFLAEE-------------------------------------------------  159 (288)
T ss_pred             cCCCHHHeEECCCCCEEEEECcccccccccc-------------------------------------------------
Confidence            9999999999999999999999874322100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                  ........|+..|+|||.+.+..  .+.++||||||+++|+|++|..||...
T Consensus       160 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  211 (288)
T cd05583         160 ----------------------------EERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVD  211 (288)
T ss_pred             ----------------------------ccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccC
Confidence                                        00112345889999999987764  688999999999999999999999643


Q ss_pred             Ch----HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          401 NN----EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       401 ~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ..    .+....+.......+..         ....+.++|.+||+.||++|||+ ..+.++|+||||+.++|+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~li~~~l~~~p~~R~t~-~~~~~~l~~~~~~~~~~~~~  277 (288)
T cd05583         212 GEQNSQSEISRRILKSKPPFPKT---------MSAEARDFIQKLLEKDPKKRLGA-NGADEIKNHPFFQGIDWDDL  277 (288)
T ss_pred             cccchHHHHHHHHHccCCCCCcc---------cCHHHHHHHHHHhcCCHhhccCc-chHHHHhcCcccccCCHHHH
Confidence            32    23333333333222221         11248999999999999999997 45668999999999999866

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-42  Score=336.80  Aligned_cols=258  Identities=29%  Similarity=0.488  Sum_probs=208.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||.|+||.||+|++..     ++..||+|++.....  ......+.+|+.+++.++||||+++++++.++..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   73 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKR-----TNQVVAIKVIDLEEA--EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSK   73 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECC-----CCeEEEEEEeecccc--chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCe
Confidence            468999999999999999999876     678899999875431  2334556779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+|+||+++++|.+++...   .++...                            ++.++.||+.||.|||+++++||
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~ql~~~l~~lh~~~i~h~  122 (274)
T cd06609          74 LWIIMEYCGGGSCLDLLKPG---KLDETY----------------------------IAFILREVLLGLEYLHEEGKIHR  122 (274)
T ss_pred             EEEEEEeeCCCcHHHHHhhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999988653   222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.++|+|||+++......                                                  
T Consensus       123 dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--------------------------------------------------  152 (274)
T cd06609         123 DIKAANILLSEEGDVKLADFGVSGQLTSTM--------------------------------------------------  152 (274)
T ss_pred             CCCHHHEEECCCCCEEEcccccceeecccc--------------------------------------------------
Confidence            999999999999999999999985432100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                  .......|++.|+|||.+.+..++.++|||||||++|+|++|..||...+..
T Consensus       153 ----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~  204 (274)
T cd06609         153 ----------------------------SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPM  204 (274)
T ss_pred             ----------------------------cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchH
Confidence                                        0112346888999999999888999999999999999999999999887766


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      .....+..........  .     ....++.++|.+||..||++||++.    ++++||||....
T Consensus       205 ~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~l~~~p~~Rpt~~----~il~~~~~~~~~  258 (274)
T cd06609         205 RVLFLIPKNNPPSLEG--N-----KFSKPFKDFVSLCLNKDPKERPSAK----ELLKHKFIKKAK  258 (274)
T ss_pred             HHHHHhhhcCCCCCcc--c-----ccCHHHHHHHHHHhhCChhhCcCHH----HHhhChhhcCCC
Confidence            6555554432211111  1     0122489999999999999999998    999999998754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=1.7e-42  Score=336.87  Aligned_cols=258  Identities=26%  Similarity=0.410  Sum_probs=199.7

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||+|++.....   .....+.+|+.+++.++||||+++++++..+
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~~aik~~~~~~~---~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~   78 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLH-----TGELAAVKIIKLEPG---DDFSLIQQEIFMVKECKHCNIVAYFGSYLSR   78 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECC-----CCeEEEEEEEecCcc---chHHHHHHHHHHHHhcCCCCeeeeeEEEEeC
Confidence            34689999999999999999999876     578899999864421   2233566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++...  ..++...                            +..++.|++.||+|||++||+
T Consensus        79 ~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~  128 (267)
T cd06646          79 EKLWICMEYCGGGSLQDIYHVT--GPLSELQ----------------------------IAYVCRETLQGLAYLHSKGKM  128 (267)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcc
Confidence            9999999999999999988653  2222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.+||+|||+++.+...                                                 
T Consensus       129 H~dl~p~nill~~~~~~~l~dfg~~~~~~~~-------------------------------------------------  159 (267)
T cd06646         129 HRDIKGANILLTDNGDVKLADFGVAAKITAT-------------------------------------------------  159 (267)
T ss_pred             ccCCCHHHEEECCCCCEEECcCccceeeccc-------------------------------------------------
Confidence            9999999999999999999999998432210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ........|++.|+|||.+.+   ..++.++||||+||++|||++|..||.
T Consensus       160 -----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~  210 (267)
T cd06646         160 -----------------------------IAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             -----------------------------ccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcc
Confidence                                         001123468899999999853   347889999999999999999999997


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      ..........+.......+.....    ......+.+||.+||..||++||+++    ++++|+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~P~~Rp~~~----~il~~l~  267 (267)
T cd06646         211 DLHPMRALFLMSKSNFQPPKLKDK----TKWSSTFHNFVKISLTKNPKKRPTAE----RLLTHLF  267 (267)
T ss_pred             ccchhhhheeeecCCCCCCCCccc----cccCHHHHHHHHHHhhCChhhCcCHH----HHhcCCC
Confidence            665444333333332222211110    01223589999999999999999998    9999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=5e-42  Score=335.63  Aligned_cols=271  Identities=21%  Similarity=0.242  Sum_probs=204.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.++.......+..||+|++......  .....+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~--~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASM--RERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            455789999999999999999998865333335678999998643211  223456779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +...++||||+++|+|.+++............                    ........+..++.|++.||+|||++|+
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~l~~lH~~~~  140 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYLRSLRPEMENNPV--------------------QAPPSLKKMIQMAGEIADGMAYLNANKF  140 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHcCcccccccc--------------------ccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999999999998654211000000                    0011122334678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.++|+|||+++.+.....                                              
T Consensus       141 vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------  174 (277)
T cd05062         141 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY----------------------------------------------  174 (277)
T ss_pred             ccCCcchheEEEcCCCCEEECCCCCccccCCcce----------------------------------------------
Confidence            9999999999999999999999999843321000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       175 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~  224 (277)
T cd05062         175 ------------------------------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG  224 (277)
T ss_pred             ------------------------------eecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence                                          000011246788999999998889999999999999999998 7999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ....+....+.........  ..      ....+.+||.+||+.||++||++.    |++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~p~~Rps~~----e~l~~  274 (277)
T cd05062         225 MSNEQVLRFVMEGGLLDKP--DN------CPDMLFELMRMCWQYNPKMRPSFL----EIISS  274 (277)
T ss_pred             CCHHHHHHHHHcCCcCCCC--CC------CCHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            8877776666554332211  11      122489999999999999999997    76653

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=3.1e-42  Score=342.68  Aligned_cols=269  Identities=28%  Similarity=0.347  Sum_probs=202.6

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|.++.     +++.||+|++...... ........+|+.++++++|+||+++++++...
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   78 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTT-----SGEIVALKKVRMDNER-DGIPISSLREITLLLNLRHPNIVELKEVVVGK   78 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECC-----CCcEEEEEEEEeccCC-CCCcchhhHHHHHHHhCCCCCCcceEEEEecC
Confidence            46789999999999999999999886     6788999998644211 11122345699999999999999999998754


Q ss_pred             --ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          162 --HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       162 --~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                        +.+|+||||+. ++|.+++.... ..+...                            .++.++.||+.||+|||++|
T Consensus        79 ~~~~~~lv~e~~~-~~l~~~l~~~~-~~l~~~----------------------------~~~~~~~qi~~~l~~lH~~~  128 (309)
T cd07845          79 HLDSIFLVMEYCE-QDLASLLDNMP-TPFSES----------------------------QVKCLMLQLLRGLQYLHENF  128 (309)
T ss_pred             CCCeEEEEEecCC-CCHHHHHHhcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHhCC
Confidence              56899999995 58888776532 222222                            22367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ++||||||+||+++.++.+||+|||++.......                                              
T Consensus       129 i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~----------------------------------------------  162 (309)
T cd07845         129 IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPA----------------------------------------------  162 (309)
T ss_pred             eecCCCCHHHEEECCCCCEEECccceeeecCCcc----------------------------------------------
Confidence            9999999999999999999999999984322100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+++.|+|||++.+. .++.++|||||||++|+|++|.+||.
T Consensus       163 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~  210 (309)
T cd07845         163 --------------------------------KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLP  210 (309)
T ss_pred             --------------------------------CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCC
Confidence                                            001122457889999998764 47999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCC-------------------CCCCCCCCc-hhH-HhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          399 GENNEKTLINILKKPLT-------------------FPRIGVSSS-KEF-EEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~-------------------~p~~~~~~~-~~~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      +.+..+.+..+......                   .+....... ..+ .....+.+||.+||+.||++||++.    |
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~----~  286 (309)
T cd07845         211 GKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAE----E  286 (309)
T ss_pred             CCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHH----H
Confidence            88887776666542110                   000000000 000 1234688999999999999999998    9


Q ss_pred             hhcCCCcCCCC
Q 010140          458 IKRHEFFKGIN  468 (517)
Q Consensus       458 ll~hp~f~~~~  468 (517)
                      +++||||++..
T Consensus       287 il~h~~f~~~~  297 (309)
T cd07845         287 ALESSYFKEKP  297 (309)
T ss_pred             HhcChhhccCC
Confidence            99999998544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.8e-42  Score=340.37  Aligned_cols=258  Identities=27%  Similarity=0.388  Sum_probs=200.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||+|.+.....  ......+.+|+.++++++||||+++++.+..++.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   73 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRP-----TGVTMAMKEIRLELD--ESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGA   73 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcC-----CCcEEEEEEeecccC--HHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCe
Confidence            478999999999999999999876     678899998864321  2234567779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCce
Q 010140          164 SCLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIV  241 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~ii  241 (517)
                      .|+||||++|++|..++..... ..+.+.                            .++.++.||+.||.|||+ .||+
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~----------------------------~~~~~~~~i~~~l~~LH~~~~i~  125 (286)
T cd06622          74 VYMCMEYMDAGSLDKLYAGGVATEGIPED----------------------------VLRRITYAVVKGLKFLKEEHNII  125 (286)
T ss_pred             EEEEEeecCCCCHHHHHHhccccCCCCHH----------------------------HHHHHHHHHHHHHHHHHhcCCEe
Confidence            9999999999999888765311 122222                            224778999999999997 5999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.+||+|||++.....                                                  
T Consensus       126 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~--------------------------------------------------  155 (286)
T cd06622         126 HRDVKPTNVLVNGNGQVKLCDFGVSGNLVA--------------------------------------------------  155 (286)
T ss_pred             eCCCCHHHEEECCCCCEEEeecCCcccccC--------------------------------------------------
Confidence            999999999999999999999998733210                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC------CCCccchHHHHHHHHHHHhhCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ------GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~------~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                    .......|++.|+|||.+.+.      .++.++|||||||++|+|++|..
T Consensus       156 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~  205 (286)
T cd06622         156 ------------------------------SLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRY  205 (286)
T ss_pred             ------------------------------CccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCC
Confidence                                          011223588899999998654      35789999999999999999999


Q ss_pred             CCCCCChHHHHHH---HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          396 PFKGENNEKTLIN---ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       396 Pf~~~~~~~~~~~---i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ||...........   +.....  +.....      ...++.+||.+||+.+|++||++.    +++.||||....
T Consensus       206 pf~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~l~~~~~~~~~~  269 (286)
T cd06622         206 PYPPETYANIFAQLSAIVDGDP--PTLPSG------YSDDAQDFVAKCLNKIPNRRPTYA----QLLEHPWLVKYK  269 (286)
T ss_pred             CCCCcchhhHHHHHHHHhhcCC--CCCCcc------cCHHHHHHHHHHcccCcccCCCHH----HHhcChhhhhcc
Confidence            9987655443332   222221  111111      223589999999999999999998    999999997643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=5.6e-42  Score=336.74  Aligned_cols=260  Identities=25%  Similarity=0.374  Sum_probs=197.1

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee-
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE-  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~-  159 (517)
                      ..++|++.+.||+|+||.||+|++..     .++.+|+|++.....    ....+..|+.+++.+ +||||+++++++. 
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~-----~~~~~~ik~~~~~~~----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKK-----NGSKAAVKILDPIHD----IDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECC-----CCceeEEEeeccccc----hHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            45789999999999999999999876     567899999864321    123455689999999 7999999999873 


Q ss_pred             ----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          160 ----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       160 ----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                          .++..|+||||++|++|.+++...........+                          ..++.++.|++.||.||
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~--------------------------~~~~~~~~~i~~~l~~l  140 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEE--------------------------PIIAYILHEALMGLQHL  140 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccH--------------------------HHHHHHHHHHHHHHHHH
Confidence                456799999999999999887643211111111                          11236789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |+++|+||||||+||+++.++.+||+|||+++.....                                           
T Consensus       141 H~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~-------------------------------------------  177 (286)
T cd06638         141 HVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTST-------------------------------------------  177 (286)
T ss_pred             HhCCccccCCCHHhEEECCCCCEEEccCCceeecccC-------------------------------------------
Confidence            9999999999999999999999999999998432210                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHH
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~el  390 (517)
                                                         ........|++.|+|||++..     ..++.++|||||||++|||
T Consensus       178 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el  222 (286)
T cd06638         178 -----------------------------------RLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIEL  222 (286)
T ss_pred             -----------------------------------CCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHH
Confidence                                               001122358999999999853     3478899999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ++|+.||........+..+......  ....+.    ....++.+||.+||+.||++||++.    |+++|+||
T Consensus       223 ~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~li~~~l~~~p~~Rps~~----ell~~~~~  286 (286)
T cd06638         223 GDGDPPLADLHPMRALFKIPRNPPP--TLHQPE----LWSNEFNDFIRKCLTKDYEKRPTVS----DLLQHVFI  286 (286)
T ss_pred             hcCCCCCCCCchhHHHhhccccCCC--cccCCC----CcCHHHHHHHHHHccCCcccCCCHH----HHhhcccC
Confidence            9999999877665544443332111  111110    0112489999999999999999998    99999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3e-42  Score=353.08  Aligned_cols=289  Identities=22%  Similarity=0.251  Sum_probs=202.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~  157 (517)
                      +.+..++|+++++||+|+||.||+|++...........||||++.....  ....+.+.+|+.+|+++. ||||++++++
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~--~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~  109 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR--SSEKQALMSELKIMTHLGPHLNIVNLLGA  109 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC--hHHHHHHHHHHHHHHhcCCCCCeeeEEEE
Confidence            4456789999999999999999999986533323456799999975422  133456778999999996 9999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccC---ccchhhh-------------hhhhhhhh-----------------
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFG---ISSAKFV-------------FFLLFFFF-----------------  204 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~---~~~~~~~-------------~~~l~~~~-----------------  204 (517)
                      +...+..|||||||++|+|.+++.........   .......             .+...-+.                 
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (400)
T cd05105         110 CTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYV  189 (400)
T ss_pred             EccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccc
Confidence            99999999999999999999998754211000   0000000             00000000                 


Q ss_pred             -------------hcCC--------------------ccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          205 -------------YNNL--------------------GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       205 -------------~~~~--------------------~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                                   ....                    ............+..++.||+.||+|||++||+||||||+|||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nil  269 (400)
T cd05105         190 PMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVL  269 (400)
T ss_pred             hhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEE
Confidence                         0000                    0000011233445679999999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.+||+|||+++.......                                                         
T Consensus       270 l~~~~~~kL~DfGla~~~~~~~~---------------------------------------------------------  292 (400)
T cd05105         270 LAQGKIVKICDFGLARDIMHDSN---------------------------------------------------------  292 (400)
T ss_pred             EeCCCEEEEEeCCcceecccccc---------------------------------------------------------
Confidence            99999999999999843221000                                                         


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHh
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINIL  410 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~  410 (517)
                                         ........+++.|+|||++.+..++.++|||||||++|||++ |..||........+....
T Consensus       293 -------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~  353 (400)
T cd05105         293 -------------------YVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKI  353 (400)
T ss_pred             -------------------ccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHH
Confidence                               001122357788999999998889999999999999999997 999998765544444333


Q ss_pred             cCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       411 ~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ......+...       ....++.+||.+||+.||++||++.
T Consensus       354 ~~~~~~~~~~-------~~~~~l~~li~~cl~~dP~~RPt~~  388 (400)
T cd05105         354 KSGYRMAKPD-------HATQEVYDIMVKCWNSEPEKRPSFL  388 (400)
T ss_pred             hcCCCCCCCc-------cCCHHHHHHHHHHCccCHhHCcCHH
Confidence            3332222111       1123589999999999999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=6.3e-42  Score=330.49  Aligned_cols=255  Identities=26%  Similarity=0.406  Sum_probs=205.6

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+|.+..     +++.+|+|.+...... ......+..|+.+|+.++||||+++++.+..++..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKA-----DQKLVIIKQIPVEQMT-KDERLAAQNECQVLKLLSHPNIIEYYENFLEDKAL   74 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcC-----CCcEEEEEEEeccccc-cHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEE
Confidence            58999999999999999999876     6788999998754332 23346677899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++||||+++++|.+++.......++...                            +..++.|++.||+|||++||+|||
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~~i~~~l~~lh~~~i~h~d  126 (256)
T cd08220          75 MIVMEYAPGGTLAEYIQKRCNSLLDEDT----------------------------ILHFFVQILLALHHVHTKLILHRD  126 (256)
T ss_pred             EEEEecCCCCCHHHHHHHhcccCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecCC
Confidence            9999999999999998764322233222                            236789999999999999999999


Q ss_pred             CCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          245 LKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       245 LKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||+||+++.+ +.+||+|||++......                                                   
T Consensus       127 l~~~nil~~~~~~~~~l~d~~~~~~~~~~---------------------------------------------------  155 (256)
T cd08220         127 LKTQNILLDKHKMVVKIGDFGISKILSSK---------------------------------------------------  155 (256)
T ss_pred             CCHHHEEEcCCCCEEEEccCCCceecCCC---------------------------------------------------
Confidence            99999999855 46899999998432210                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                  .......|++.|+|||.+.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       156 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~  207 (256)
T cd08220         156 ----------------------------SKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP  207 (256)
T ss_pred             ----------------------------ccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchH
Confidence                                        0111235888999999999888899999999999999999999999988777


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .....+........  ...      ...++.++|.+||..||.+|||+.    |+++||||
T Consensus       208 ~~~~~~~~~~~~~~--~~~------~~~~l~~li~~~l~~~p~~Rpt~~----~ll~~p~~  256 (256)
T cd08220         208 ALVLKIMSGTFAPI--SDR------YSPDLRQLILSMLNLDPSKRPQLS----QIMAQPIC  256 (256)
T ss_pred             HHHHHHHhcCCCCC--CCC------cCHHHHHHHHHHccCChhhCCCHH----HHhhCCCC
Confidence            76666655432211  111      122489999999999999999998    99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2e-42  Score=347.93  Aligned_cols=294  Identities=18%  Similarity=0.208  Sum_probs=204.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      |.+..++|++.+.||+|+||.||+|...+.....+++.||+|++.....  ......+..|+.++.++ +||||++++++
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~E~~~~~~l~~h~niv~~~~~   79 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT--ASEYKALMTELKILIHIGHHLNVVNLLGA   79 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC--HHHHHHHHHHHHHHHhhccCcchhheeee
Confidence            4556678999999999999999999876543333568899999864321  12345566799999999 89999999998


Q ss_pred             ee-cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhh--------------------------hhh-h---hhhhc
Q 010140          158 FE-ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF--------------------------FLL-F---FFFYN  206 (517)
Q Consensus       158 ~~-~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~--------------------------~~l-~---~~~~~  206 (517)
                      +. .+..++++|||+++|+|.+++.................                          +.. .   .....
T Consensus        80 ~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
T cd05054          80 CTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEED  159 (337)
T ss_pred             EecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccc
Confidence            75 45678999999999999999865432111000000000                          000 0   00000


Q ss_pred             CC-ccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHH
Q 010140          207 NL-GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAI  285 (517)
Q Consensus       207 ~~-~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~  285 (517)
                      .. ............+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+.....           
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~-----------  228 (337)
T cd05054         160 EEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD-----------  228 (337)
T ss_pred             hhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcc-----------
Confidence            00 000011233445678999999999999999999999999999999999999999999854321100           


Q ss_pred             hhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCccc
Q 010140          286 EKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLA  365 (517)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~A  365 (517)
                                                                                       ........++..|+|
T Consensus       229 -----------------------------------------------------------------~~~~~~~~~~~~y~a  243 (337)
T cd05054         229 -----------------------------------------------------------------YVRKGDARLPLKWMA  243 (337)
T ss_pred             -----------------------------------------------------------------hhhccCCCCCccccC
Confidence                                                                             001122346778999


Q ss_pred             chhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCC
Q 010140          366 PEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       366 PE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~d  444 (517)
                      ||++.+..++.++|||||||++|||++ |..||.+....+.+............ ...      ...++.+++.+||+.+
T Consensus       244 PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~cl~~~  316 (337)
T cd05054         244 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRA-PEY------ATPEIYSIMLDCWHNN  316 (337)
T ss_pred             cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCC-Ccc------CCHHHHHHHHHHccCC
Confidence            999999999999999999999999997 99999876554444444333222111 111      1235899999999999


Q ss_pred             cccccCCCCChHHhhcC
Q 010140          445 PKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       445 P~~R~t~~~~~~ell~h  461 (517)
                      |++||++.    |+++|
T Consensus       317 p~~RPs~~----ell~~  329 (337)
T cd05054         317 PEDRPTFS----ELVEI  329 (337)
T ss_pred             hhhCcCHH----HHHHH
Confidence            99999997    77664

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.1e-43  Score=327.16  Aligned_cols=278  Identities=26%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-C
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-S  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~  161 (517)
                      +..|++++.||+|+||.||+|..+++... -.+.||||.++.+... .......-+|+.+++.++||||+.|..+|-. +
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~k-r~k~yAiKkfk~~kd~-tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDK-RTKEYAIKKFKGEKDG-TGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcc-cchhhHHHHHhccCCC-CCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            35799999999999999999976653221 2458999998755211 1112334469999999999999999999976 8


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ..++|++||++. ||.+.|+.+......                         ......++.++.||+.|+.|||++-|+
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~-------------------------~lp~~mvKsilwQil~Gv~YLH~NWvl  154 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAK-------------------------QLPRSMVKSILWQILDGVHYLHSNWVL  154 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhc-------------------------cCCHHHHHHHHHHHHhhhHHHhhhhee
Confidence            899999999965 999988765432211                         122334567889999999999999999


Q ss_pred             eccCCCCceEEccC----CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          242 YRDLKPENVLVRED----GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       242 HrDLKp~NILl~~~----~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ||||||.|||+..+    |+|||+|||+++.+...-..+                                         
T Consensus       155 HRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl-----------------------------------------  193 (438)
T KOG0666|consen  155 HRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPL-----------------------------------------  193 (438)
T ss_pred             eccCCcceEEEeccCCccCeeEeecccHHHHhhcccccc-----------------------------------------
Confidence            99999999999877    899999999997765321110                                         


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .....++-|.+|+|||.+.|.. |+.+.||||.|||+.||++-++.
T Consensus       194 ----------------------------------~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~Pl  239 (438)
T KOG0666|consen  194 ----------------------------------ASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPL  239 (438)
T ss_pred             ----------------------------------ccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCcc
Confidence                                              0123356799999999999976 89999999999999999999999


Q ss_pred             CCCCCh---------HHHHHHHhcCCC-----CCCCCCCCC------------------chhH----H-hhhhHHHHHHH
Q 010140          397 FKGENN---------EKTLINILKKPL-----TFPRIGVSS------------------SKEF----E-EVVKLQDLISK  439 (517)
Q Consensus       397 f~~~~~---------~~~~~~i~~~~~-----~~p~~~~~~------------------~~~~----~-~~~~l~dLi~~  439 (517)
                      |.+...         .+.+.+|.+-..     .+|......                  ...+    . ..+...+|+.+
T Consensus       240 F~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~k  319 (438)
T KOG0666|consen  240 FKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQK  319 (438)
T ss_pred             ccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHH
Confidence            986432         234445543111     111110000                  0000    0 11236799999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||+.||.+|+|++    ++++|+||..-
T Consensus       320 lL~yDP~kRIta~----qAleh~yF~~d  343 (438)
T KOG0666|consen  320 LLTYDPIKRITAE----QALEHPYFTED  343 (438)
T ss_pred             HhccCchhhccHH----HHhcccccccC
Confidence            9999999999998    99999999854

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1.5e-42  Score=340.42  Aligned_cols=262  Identities=25%  Similarity=0.383  Sum_probs=195.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+|+++.     +++.||+|.+...... ......+.+|+.+++.++||||+++++++.+....
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~-----~g~~~~~k~~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   74 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRE-----THEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLYDVLHSDKKL   74 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECC-----CCcEEEEEEeeccccc-ccCccchhHHHHHHHhcCCCCeeeHHHHhccCCce
Confidence            48999999999999999999886     6788999998654211 12234556699999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||++ ++|.+++.... ..+++..                            ++.++.||+.||.|||++||+|||
T Consensus        75 ~lv~e~~~-~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~al~~LH~~~i~H~d  124 (284)
T cd07839          75 TLVFEYCD-QDLKKYFDSCN-GDIDPEI----------------------------VKSFMFQLLKGLAFCHSHNVLHRD  124 (284)
T ss_pred             EEEEecCC-CCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEecCC
Confidence            99999995 58887776532 2233222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.+||+|||+++......                                                   
T Consensus       125 l~~~nil~~~~~~~~l~dfg~~~~~~~~~---------------------------------------------------  153 (284)
T cd07839         125 LKPQNLLINKNGELKLADFGLARAFGIPV---------------------------------------------------  153 (284)
T ss_pred             CCHHHEEEcCCCcEEECccchhhccCCCC---------------------------------------------------
Confidence            99999999999999999999984321100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCC-CCCCh
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPF-KGENN  402 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf-~~~~~  402 (517)
                                                 .......+++.|+|||++.+.. ++.++|||||||++|+|++|..|| .+.+.
T Consensus       154 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~  206 (284)
T cd07839         154 ---------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  206 (284)
T ss_pred             ---------------------------CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCH
Confidence                                       0011235788999999987754 789999999999999999998885 44444


Q ss_pred             HHHHHHHhcCCC-----------------CCCCCCCCCc---hhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          403 EKTLINILKKPL-----------------TFPRIGVSSS---KEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       403 ~~~~~~i~~~~~-----------------~~p~~~~~~~---~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      .+.+..+.....                 .++.......   .......++++||.+||+.||.+|||++    ++++||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~----~il~h~  282 (284)
T cd07839         207 DDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAE----EALQHP  282 (284)
T ss_pred             HHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHH----HHhcCC
Confidence            444443322100                 0000000000   0001234688999999999999999998    999999


Q ss_pred             Cc
Q 010140          463 FF  464 (517)
Q Consensus       463 ~f  464 (517)
                      ||
T Consensus       283 ~f  284 (284)
T cd07839         283 YF  284 (284)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-43  Score=302.57  Aligned_cols=265  Identities=25%  Similarity=0.381  Sum_probs=208.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|.-.++||+|.||+||+|+.++     +.+.||+|.++-+... +..-....+|+-+|+.++|.|||+++++...+..+
T Consensus         3 ~ydkmekigegtygtvfkarn~~-----t~eivalkrvrldddd-egvpssalreicllkelkhknivrl~dvlhsdkkl   76 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRE-----THEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKL   76 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCC-----ccceEEEEEEeccCCC-CCCcHHHHHHHHHHHHhhhcceeehhhhhccCcee
Confidence            56677899999999999999987     7889999998754321 12234556799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      -||+||| ..+|..+.....+. +..                            ..+|.++.|+++||.|+|++++.|||
T Consensus        77 tlvfe~c-dqdlkkyfdslng~-~d~----------------------------~~~rsfmlqllrgl~fchshnvlhrd  126 (292)
T KOG0662|consen   77 TLVFEFC-DQDLKKYFDSLNGD-LDP----------------------------EIVRSFMLQLLRGLGFCHSHNVLHRD  126 (292)
T ss_pred             EEeHHHh-hHHHHHHHHhcCCc-CCH----------------------------HHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            9999999 66998888765321 111                            12357789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||.|+||+.+|.+||+|||+++.+...-.                                                  
T Consensus       127 lkpqnllin~ngelkladfglarafgipvr--------------------------------------------------  156 (292)
T KOG0662|consen  127 LKPQNLLINRNGELKLADFGLARAFGIPVR--------------------------------------------------  156 (292)
T ss_pred             CCcceEEeccCCcEEecccchhhhcCCceE--------------------------------------------------
Confidence            999999999999999999999966542111                                                  


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhh-CCCCCCCCCh
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLY-GTTPFKGENN  402 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~ellt-G~~Pf~~~~~  402 (517)
                                                  ....-+-|.+|++|.++.|.. |++..|+||.|||+.|+.. |++.|.+.+.
T Consensus       157 ----------------------------cysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dv  208 (292)
T KOG0662|consen  157 ----------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  208 (292)
T ss_pred             ----------------------------eeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcH
Confidence                                        112235789999999999977 8999999999999999984 8899999999


Q ss_pred             HHHHHHHhcCCC-----CCCCCCC-----------CCchhHHhh----hhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          403 EKTLINILKKPL-----TFPRIGV-----------SSSKEFEEV----VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       403 ~~~~~~i~~~~~-----~~p~~~~-----------~~~~~~~~~----~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      .+.+.+|.....     .+|....           .........    ..-+||++++|.-+|..|++++    ++++||
T Consensus       209 ddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisae----aalqhp  284 (292)
T KOG0662|consen  209 DDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAE----AALQHP  284 (292)
T ss_pred             HHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHH----HHhcCc
Confidence            888888864211     1111100           000111111    2357999999999999999998    999999


Q ss_pred             CcCCC
Q 010140          463 FFKGI  467 (517)
Q Consensus       463 ~f~~~  467 (517)
                      ||.+.
T Consensus       285 yf~d~  289 (292)
T KOG0662|consen  285 YFSDF  289 (292)
T ss_pred             ccccc
Confidence            99864

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=5.7e-42  Score=330.95  Aligned_cols=251  Identities=26%  Similarity=0.442  Sum_probs=202.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||++++..     +++.||+|.++....  ....+.+..|+.+++.++||||+++++.+..++.+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~-----~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   73 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVN-----SDQKYAMKEIRLPKS--SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHL   73 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcC-----CCceEEEEEEEcCcc--hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEE
Confidence            58999999999999999999876     678899999864321  12345666799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++|+|.+++.......++....                            ..++.||+.||.|||++||+|+|
T Consensus        74 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~i~~al~~lH~~~i~H~d  125 (255)
T cd08219          74 YIVMEYCDGGDLMQKIKLQRGKLFPEDTI----------------------------LQWFVQMCLGVQHIHEKRVLHRD  125 (255)
T ss_pred             EEEEeeCCCCcHHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHHHHHhhCCcccCC
Confidence            99999999999999886543333333222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++.......                                                   
T Consensus       126 l~p~nili~~~~~~~l~dfg~~~~~~~~~---------------------------------------------------  154 (255)
T cd08219         126 IKSKNIFLTQNGKVKLGDFGSARLLTSPG---------------------------------------------------  154 (255)
T ss_pred             CCcceEEECCCCcEEEcccCcceeecccc---------------------------------------------------
Confidence            99999999999999999999874322100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|++.|+|||++.+..++.++|+||||+++|+|++|..||...+...
T Consensus       155 ---------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~  207 (255)
T cd08219         155 ---------------------------AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN  207 (255)
T ss_pred             ---------------------------cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHH
Confidence                                       01123468899999999998889999999999999999999999999887777


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ....+..+.......  .      ....+.+||.+||+.||++||++.    +++.
T Consensus       208 ~~~~~~~~~~~~~~~--~------~~~~~~~li~~~l~~~P~~Rp~~~----~il~  251 (255)
T cd08219         208 LILKVCQGSYKPLPS--H------YSYELRSLIKQMFKRNPRSRPSAT----TILS  251 (255)
T ss_pred             HHHHHhcCCCCCCCc--c------cCHHHHHHHHHHHhCCcccCCCHH----HHhh
Confidence            766666544322111  1      112489999999999999999997    7765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.6e-42  Score=330.72  Aligned_cols=258  Identities=30%  Similarity=0.460  Sum_probs=206.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||.|+||.||+|.+..     +++.+|+|++......   ....+.+|+.+++.++||||+++++++.+++
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~---~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   73 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIA-----TGELVAIKVIKLEPGD---DFEIIQQEISMLKECRHPNIVAYFGSYLRRD   73 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecC-----CCCEEEEEEEEcCchh---hHHHHHHHHHHHHhCCCCChhceEEEEEeCC
Confidence            3689999999999999999999876     5678999998755322   3456677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|++|||+++++|.+++.... ..+....                            +..++.|++.||+|||++||+|
T Consensus        74 ~~~l~~e~~~~~~l~~~~~~~~-~~l~~~~----------------------------~~~~~~ql~~~l~~lh~~~i~h  124 (262)
T cd06613          74 KLWIVMEYCGGGSLQDIYQVTR-GPLSELQ----------------------------IAYVCRETLKGLAYLHETGKIH  124 (262)
T ss_pred             EEEEEEeCCCCCcHHHHHHhhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCcee
Confidence            9999999999999999876531 1222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||||+||+++.++.+||+|||++......                                                  
T Consensus       125 ~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~--------------------------------------------------  154 (262)
T cd06613         125 RDIKGANILLTEDGDVKLADFGVSAQLTAT--------------------------------------------------  154 (262)
T ss_pred             cCCChhhEEECCCCCEEECccccchhhhhh--------------------------------------------------
Confidence            999999999999999999999987432110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                  ........|+..|+|||.+.+.   .++.++|||||||++|+|++|.+||.+
T Consensus       155 ----------------------------~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~  206 (262)
T cd06613         155 ----------------------------IAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFD  206 (262)
T ss_pred             ----------------------------hhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence                                        0011234688899999999876   788999999999999999999999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      .+.......+.......+....    ......++.+||.+||..||.+||++.    +++.|+|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rpt~~----~il~~~~  262 (262)
T cd06613         207 LHPMRALFLISKSNFPPPKLKD----KEKWSPVFHDFIKKCLTKDPKKRPTAT----KLLQHPF  262 (262)
T ss_pred             CCHHHHHHHHHhccCCCccccc----hhhhhHHHHHHHHHHcCCChhhCCCHH----HHhcCCC
Confidence            7766655555444322221111    112234589999999999999999998    9999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3.4e-42  Score=337.11  Aligned_cols=273  Identities=22%  Similarity=0.252  Sum_probs=207.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+.+.||+|+||.||+|++........++.||||++......  .....+.+|+.+|+.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   80 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN--DARKDFEREAELLTNFQHENIVKFYGVCTEG   80 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCH--HHHHHHHHHHHHHHhcCCCCchheeeEEecC
Confidence            34679999999999999999998865432235688999998754221  2345677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||++|++|.+++............                ............+..++.||+.||.|||++|++
T Consensus        81 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~  144 (280)
T cd05049          81 DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKS----------------PDSPMGELTLSQLLQIAVQIASGMVYLASQHFV  144 (280)
T ss_pred             CCeEEEEecCCCCCHHHHHHhcCCchhhhcc----------------cccccccccHHHHHHHHHHHHHHHHHHhhCCee
Confidence            9999999999999999999765321100000                000011122333457889999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.......                                               
T Consensus       145 h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~-----------------------------------------------  177 (280)
T cd05049         145 HRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDY-----------------------------------------------  177 (280)
T ss_pred             ccccccceEEEcCCCeEEECCcccceecccCcc-----------------------------------------------
Confidence            999999999999999999999999843211000                                               


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+.
T Consensus       178 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~  228 (280)
T cd05049         178 -----------------------------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL  228 (280)
T ss_pred             -----------------------------eecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence                                         000112246788999999999899999999999999999998 99999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +..+....+..+....+...        .+..+.+||.+||+.||++||++.    |+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~l~~~p~~Rp~~~----eil~  276 (280)
T cd05049         229 SNEEVIECITQGRLLQRPRT--------CPSEVYDIMLGCWKRDPQQRINIK----DIHE  276 (280)
T ss_pred             CHHHHHHHHHcCCcCCCCCC--------CCHHHHHHHHHHcCCCcccCCCHH----HHHH
Confidence            88777777765544332211        122589999999999999999997    6653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=7.6e-42  Score=332.33  Aligned_cols=260  Identities=27%  Similarity=0.413  Sum_probs=200.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH--HHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-  160 (517)
                      .+|++.+.||+|+||.||+|.+..     +++.||+|.+.....  ........+.+|+.+++.++||||+++++++.. 
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   76 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVD-----TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDR   76 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcC-----CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcC
Confidence            468999999999999999999876     678899998864321  122345567789999999999999999998865 


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       +..++++|||+++++|.+++....  .+....                            .+.++.||+.||+|||+++
T Consensus        77 ~~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~----------------------------~~~~~~qi~~~l~~LH~~~  126 (266)
T cd06651          77 AEKTLTIFMEYMPGGSVKDQLKAYG--ALTESV----------------------------TRKYTRQILEGMSYLHSNM  126 (266)
T ss_pred             CCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence             467899999999999999886532  222211                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++.......                                             
T Consensus       127 i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------  161 (266)
T cd06651         127 IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICM---------------------------------------------  161 (266)
T ss_pred             eeeCCCCHHHEEECCCCCEEEccCCCccccccccc---------------------------------------------
Confidence            99999999999999999999999999843321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    .........|+..|+|||.+.+..++.++|||||||++|||++|+.||..
T Consensus       162 ------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~  211 (266)
T cd06651         162 ------------------------------SGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE  211 (266)
T ss_pred             ------------------------------cCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccc
Confidence                                          00001223588899999999988899999999999999999999999987


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      .........+..... .+....      .....+++|| +||..+|++||++.    |+++||||+
T Consensus       212 ~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~li-~~~~~~p~~Rp~~~----eil~hp~~~  265 (266)
T cd06651         212 YEAMAAIFKIATQPT-NPQLPS------HISEHARDFL-GCIFVEARHRPSAE----ELLRHPFAQ  265 (266)
T ss_pred             cchHHHHHHHhcCCC-CCCCch------hcCHHHHHHH-HHhcCChhhCcCHH----HHhcCcccc
Confidence            766555554443221 111111      1122478888 57778999999998    999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=4.7e-42  Score=337.10  Aligned_cols=263  Identities=26%  Similarity=0.386  Sum_probs=199.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||+|++...... ....+.+..|+.+++.++||||+++++++.....
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   74 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRE-----TGQIVAIKKFVESEDD-PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRK   74 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECC-----CCcEEEEEEEeecccC-ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCE
Confidence            479999999999999999999876     6788999998644211 1122445679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++++.|..++...  ..++...                            ++.++.||+.||+|||++||+||
T Consensus        75 ~~~v~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~ql~~~l~~LH~~~i~H~  124 (286)
T cd07847          75 LHLVFEYCDHTVLNELEKNP--RGVPEHL----------------------------IKKIIWQTLQAVNFCHKHNCIHR  124 (286)
T ss_pred             EEEEEeccCccHHHHHHhCC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCceec
Confidence            99999999998887765432  1232222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++.......                                                  
T Consensus       125 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------  154 (286)
T cd07847         125 DVKPENILITKQGQIKLCDFGFARILTGPG--------------------------------------------------  154 (286)
T ss_pred             CCChhhEEEcCCCcEEECccccceecCCCc--------------------------------------------------
Confidence            999999999999999999999984322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .......++..|+|||++.+. .++.++|||||||++|+|++|..||.+...
T Consensus       155 ----------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         155 ----------------------------DDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             ----------------------------ccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence                                        011223578899999998764 478999999999999999999999998776


Q ss_pred             HHHHHHHhcCC-------------------CCCCCCCCCCchh---HHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          403 EKTLINILKKP-------------------LTFPRIGVSSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       403 ~~~~~~i~~~~-------------------~~~p~~~~~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+....+....                   ...+.........   ......+.+||.+||+.||++||++.    |++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~----eil~  282 (286)
T cd07847         207 VDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCE----ELLE  282 (286)
T ss_pred             HHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHH----HHhc
Confidence            55544432210                   0011110000000   01234588999999999999999998    9999


Q ss_pred             CCCc
Q 010140          461 HEFF  464 (517)
Q Consensus       461 hp~f  464 (517)
                      ||||
T Consensus       283 ~~~f  286 (286)
T cd07847         283 HPYF  286 (286)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.1e-41  Score=330.86  Aligned_cols=260  Identities=28%  Similarity=0.420  Sum_probs=201.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH--HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA--LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-  160 (517)
                      .+|++.+.||+|+||.||+|.+..     +++.||||.+....  .........+.+|+.+++.++||||+++++++.+ 
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   76 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDAD-----TGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDP   76 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcC-----CCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccC
Confidence            579999999999999999999876     67899999875321  1112345677789999999999999999999876 


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ...+|+||||++|++|.+++....  .+....                            ...++.||+.||+|||++|
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~~l~~~l~~lH~~~  126 (265)
T cd06652          77 MERTLSIFMEHMPGGSIKDQLKSYG--ALTENV----------------------------TRKYTRQILEGVSYLHSNM  126 (265)
T ss_pred             CCceEEEEEEecCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence             357899999999999999886542  222221                            1367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+|+||||+|||++.++.++|+|||+++.......                                             
T Consensus       127 i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~---------------------------------------------  161 (265)
T cd06652         127 IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL---------------------------------------------  161 (265)
T ss_pred             EecCCCCHHHEEecCCCCEEECcCccccccccccc---------------------------------------------
Confidence            99999999999999999999999998843211000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    .........|+..|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       162 ------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  211 (265)
T cd06652         162 ------------------------------SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAE  211 (265)
T ss_pred             ------------------------------cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCc
Confidence                                          00011233588999999999988899999999999999999999999987


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ........++...... +....      .....+.++|.+||. +|++||+++    |+++|||+.
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~i~~~l~-~p~~Rp~~~----~il~~~~~~  265 (265)
T cd06652         212 FEAMAAIFKIATQPTN-PVLPP------HVSDHCRDFLKRIFV-EAKLRPSAD----ELLRHTFVH  265 (265)
T ss_pred             cchHHHHHHHhcCCCC-CCCch------hhCHHHHHHHHHHhc-ChhhCCCHH----HHhcCcccC
Confidence            7665555554433211 11111      122358899999995 999999997    999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.6e-42  Score=338.83  Aligned_cols=263  Identities=27%  Similarity=0.383  Sum_probs=200.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++++.||.|+||.||+|+++.     +++.||||.+...... ......+..|+.++++++||||+++++++.+++..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   74 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKL-----TGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKL   74 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECC-----CCCEEEEEEccccccc-cccchHHHHHHHHHHhcCCCCCcchhhhcccCCcE
Confidence            48999999999999999999876     6788999998654221 12234567799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+. ++|..++.......+.....                            +.++.||+.||+|||++|++|||
T Consensus        75 ~~v~e~~~-~~l~~~~~~~~~~~l~~~~~----------------------------~~~~~~i~~~l~~lh~~~i~H~~  125 (284)
T cd07860          75 YLVFEFLH-QDLKKFMDASPLSGIPLPLI----------------------------KSYLFQLLQGLAFCHSHRVLHRD  125 (284)
T ss_pred             EEEeeccc-cCHHHHHHhCCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeecCC
Confidence            99999995 68988876654333333222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |+|+||+++.++.+||+|||++......                                                    
T Consensus       126 l~p~nill~~~~~~~l~dfg~~~~~~~~----------------------------------------------------  153 (284)
T cd07860         126 LKPQNLLINTEGAIKLADFGLARAFGVP----------------------------------------------------  153 (284)
T ss_pred             CCHHHEEECCCCCEEEeeccchhhcccC----------------------------------------------------
Confidence            9999999999999999999987432110                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                ........+++.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+..
T Consensus       154 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~  207 (284)
T cd07860         154 --------------------------VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI  207 (284)
T ss_pred             --------------------------ccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                                      00011224688999999987754 688999999999999999999999887766


Q ss_pred             HHHHHHhcCCCC------------------CCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          404 KTLINILKKPLT------------------FPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       404 ~~~~~i~~~~~~------------------~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      ....++......                  ++.........  .....++++||.+||+.||.+||++.    ++++|||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~----~~l~~~~  283 (284)
T cd07860         208 DQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAK----AALAHPF  283 (284)
T ss_pred             HHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHH----HHhcCCC
Confidence            555444331111                  11100000000  01224578999999999999999998    9999999


Q ss_pred             c
Q 010140          464 F  464 (517)
Q Consensus       464 f  464 (517)
                      |
T Consensus       284 f  284 (284)
T cd07860         284 F  284 (284)
T ss_pred             C
Confidence            8

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=6.4e-42  Score=370.15  Aligned_cols=280  Identities=22%  Similarity=0.259  Sum_probs=200.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|+++++||+|+||.||+|++..     +++.||||++..+.........++.+|+.+++.++||||+++++++.+++
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~-----tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~   75 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPV-----CSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD   75 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECC-----CCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC
Confidence            3689999999999999999999876     67889999997653333344567788999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ..|+||||++||+|.+++...... .+....                    ........+..++.||+.||+|||++||+
T Consensus        76 ~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~--------------------~~~lsv~~iL~I~~QIa~AL~yLHs~GII  135 (932)
T PRK13184         76 PVYYTMPYIEGYTLKSLLKSVWQKESLSKEL--------------------AEKTSVGAFLSIFHKICATIEYVHSKGVL  135 (932)
T ss_pred             EEEEEEEcCCCCCHHHHHHHhhhccccchhh--------------------hcccCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            999999999999999988653211 111000                    00111122346789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.+|.+||+|||+++............                +                         
T Consensus       136 HRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l----------------~-------------------------  174 (932)
T PRK13184        136 HRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDI----------------D-------------------------  174 (932)
T ss_pred             ccCCchheEEEcCCCCEEEEecCcceeccccccccccc----------------c-------------------------
Confidence            99999999999999999999999986542111000000                0                         


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                            ....             .............+||+.|||||++.+..++.++|||||||++|||++|..||....
T Consensus       175 ------~~~~-------------~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~  235 (932)
T PRK13184        175 ------VDER-------------NICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKK  235 (932)
T ss_pred             ------cccc-------------cccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcc
Confidence                  0000             000000111234579999999999999999999999999999999999999998765


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ..........   ..|....+   ....+..+.+++.+||+.||++|++..+
T Consensus       236 ~~ki~~~~~i---~~P~~~~p---~~~iP~~L~~LI~rcL~~DP~kR~ss~e  281 (932)
T PRK13184        236 GRKISYRDVI---LSPIEVAP---YREIPPFLSQIAMKALAVDPAERYSSVQ  281 (932)
T ss_pred             hhhhhhhhhc---cChhhccc---cccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            4433222111   11111000   0112235899999999999999998763

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6e-42  Score=333.95  Aligned_cols=257  Identities=30%  Similarity=0.452  Sum_probs=200.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      .++|++.+.||+|+||.||+|.++.     +++.+++|++.....    ....+..|+.+++++ +||||+++++++...
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   75 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKK-----TGQLVAIKIMDIIED----EEEEIKEEYNILRKYSNHPNIATFYGAFIKK   75 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECC-----CCcEEEEEEEecCch----hHHHHHHHHHHHHHhcCCCChheEEEEEEec
Confidence            4789999999999999999999876     567899999876532    234567799999998 799999999999654


Q ss_pred             ------ceeEEEEEecCCCchhHHHHhCC--CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          162 ------HYSCLVMEYCPGGDLYAARQRQP--GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       162 ------~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                            ..+|+||||+++++|.+++....  ...+....                            ++.++.||+.||.
T Consensus        76 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ql~~al~  127 (275)
T cd06608          76 NPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEW----------------------------IAYILRETLRGLA  127 (275)
T ss_pred             CCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHH----------------------------HHHHHHHHHHHHH
Confidence                  45899999999999998876532  22222222                            2367899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++|++|+||+|+||+++.++.++|+|||++......                                         
T Consensus       128 ~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~-----------------------------------------  166 (275)
T cd06608         128 YLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDST-----------------------------------------  166 (275)
T ss_pred             HHhcCCcccCCCCHHHEEEccCCeEEECCCccceecccc-----------------------------------------
Confidence            999999999999999999999999999999987432110                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-----CCCccchHHHHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-----GHGSAVDWWTLGVFLY  388 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-----~~~~~~DiWSlGvil~  388 (517)
                                                           ........|++.|+|||++...     .++.++|||||||++|
T Consensus       167 -------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~  209 (275)
T cd06608         167 -------------------------------------LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAI  209 (275)
T ss_pred             -------------------------------------hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHH
Confidence                                                 0011234589999999998642     3678999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +|++|..||...........+........  .  ...  .....+++||.+||..||++||++.    ++++|||+
T Consensus       210 ~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~--~~~--~~~~~~~~li~~~l~~dp~~Rpt~~----~ll~~~~~  275 (275)
T cd06608         210 ELADGKPPLCDMHPMRALFKIPRNPPPTL--K--SPE--NWSKKFNDFISECLIKNYEQRPFME----ELLEHPFI  275 (275)
T ss_pred             HHHhCCCCccccchHHHHHHhhccCCCCC--C--chh--hcCHHHHHHHHHHhhcChhhCcCHH----HHhcCCCC
Confidence            99999999987766666655554432111  1  000  1223589999999999999999998    99999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-42  Score=337.91  Aligned_cols=263  Identities=29%  Similarity=0.419  Sum_probs=196.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++.+.||+|+||.||+|+++.     +++.||||.+......  .....+.+|+.+++.++||||+++++++.+++
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~-----~~~~~~iK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   76 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKL-----TGQLVALKEIRLEHEE--GAPFTAIREASLLKDLKHANIVTLHDIIHTKK   76 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcC-----CCcEEEEEEEeccccc--CCchhHHHHHHHHhhCCCcceeeEEEEEecCC
Confidence            4789999999999999999999875     5688999998654211  12234556999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+. ++|.+++..... .+....                            ++.++.||+.||.|||++||+|
T Consensus        77 ~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~----------------------------~~~~~~ql~~al~~lH~~~i~H  126 (291)
T cd07844          77 TLTLVFEYLD-TDLKQYMDDCGG-GLSMHN----------------------------VRLFLFQLLRGLAYCHQRRVLH  126 (291)
T ss_pred             eEEEEEecCC-CCHHHHHHhCCC-CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeec
Confidence            9999999996 599888765432 222222                            2467889999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++......                                                 
T Consensus       127 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~-------------------------------------------------  157 (291)
T cd07844         127 RDLKPQNLLISERGELKLADFGLARAKSVPS-------------------------------------------------  157 (291)
T ss_pred             ccCCHHHEEEcCCCCEEECccccccccCCCC-------------------------------------------------
Confidence            9999999999999999999999873211000                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......++..|+|||++.+. .++.++||||+||++|+|++|..||.+..
T Consensus       158 -----------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         158 -----------------------------KTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             -----------------------------ccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence                                         001112467889999998764 48899999999999999999999998765


Q ss_pred             -hHHHHHHHhcCCCC-------------------CCCCCCCC----chhHHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          402 -NEKTLINILKKPLT-------------------FPRIGVSS----SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       402 -~~~~~~~i~~~~~~-------------------~p~~~~~~----~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                       ..+.+..+......                   .+......    ........++.++|.+||+.||++||++.    |
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~----e  284 (291)
T cd07844         209 DVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAA----E  284 (291)
T ss_pred             cHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHH----H
Confidence             22332222210000                   00000000    00001114578999999999999999998    9


Q ss_pred             hhcCCCc
Q 010140          458 IKRHEFF  464 (517)
Q Consensus       458 ll~hp~f  464 (517)
                      +++||||
T Consensus       285 ~l~~~~f  291 (291)
T cd07844         285 AMKHPYF  291 (291)
T ss_pred             HhcCCCC
Confidence            9999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=5.3e-42  Score=347.47  Aligned_cols=262  Identities=27%  Similarity=0.386  Sum_probs=198.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++.+.||+|+||.||+|++..     +++.||||++.+.... ......+.+|+.+++.++||||++++++|... 
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   88 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTV-----TGQNVAIKKLSRPFQN-VTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQK   88 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECC-----CCCEEEEEecCccccC-hhHHHHHHHHHHHHHhcCCCCCcceeeeeccCC
Confidence            4789999999999999999999886     6788999998643211 12334556799999999999999999988643 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ...|+||||+. ++|.+.+...    +....                            ++.++.||+.||+|||
T Consensus        89 ~~~~~~~~~lv~e~~~-~~l~~~~~~~----l~~~~----------------------------~~~~~~ql~~aL~~LH  135 (353)
T cd07850          89 SLEEFQDVYLVMELMD-ANLCQVIQMD----LDHER----------------------------MSYLLYQMLCGIKHLH  135 (353)
T ss_pred             CccccCcEEEEEeccC-CCHHHHHhhc----CCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                 35799999994 5887776532    22221                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++.....                                            
T Consensus       136 ~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~--------------------------------------------  171 (353)
T cd07850         136 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS--------------------------------------------  171 (353)
T ss_pred             hCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCC--------------------------------------------
Confidence            999999999999999999999999999998432110                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         .......|++.|+|||++.+..++.++|||||||++|+|++|+.|
T Consensus       172 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p  216 (353)
T cd07850         172 -----------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVL  216 (353)
T ss_pred             -----------------------------------CCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCC
Confidence                                               001223588999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCC-------------------------------CCCCCCch---hHHhhhhHHHHHHHhcc
Q 010140          397 FKGENNEKTLINILKKPLTFP-------------------------------RIGVSSSK---EFEEVVKLQDLISKLLV  442 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p-------------------------------~~~~~~~~---~~~~~~~l~dLi~~~L~  442 (517)
                      |...+....+.++.......+                               ........   .-.....+++||.+||+
T Consensus       217 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  296 (353)
T cd07850         217 FPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLV  296 (353)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcC
Confidence            988766554444432110000                               00000000   00123357899999999


Q ss_pred             CCcccccCCCCChHHhhcCCCcCC
Q 010140          443 KNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       443 ~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .||++||++.    |+|.||||+.
T Consensus       297 ~dP~~R~t~~----eiL~~~~~~~  316 (353)
T cd07850         297 IDPEKRISVD----DALQHPYINV  316 (353)
T ss_pred             CChhhCcCHH----HHhcChhHhh
Confidence            9999999998    9999999983

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=7.6e-42  Score=332.36  Aligned_cols=261  Identities=23%  Similarity=0.356  Sum_probs=200.7

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH---HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA---LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~---~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      +|+..+.||+|+||.||+|++..     +++.||+|++....   .........+..|+.++++++||||+++++++.+.
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVK-----TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCED   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEcC-----CCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccC
Confidence            47888999999999999999876     67889999986432   12223456778899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..++||||++|++|.+++....  .+.+..                            +..++.||+.||.|||++|++
T Consensus        76 ~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~ql~~al~~LH~~~i~  125 (268)
T cd06630          76 SHFNLFVEWMAGGSVSHLLSKYG--AFKEAV----------------------------IINYTEQLLRGLSYLHENQII  125 (268)
T ss_pred             CeEEEEEeccCCCcHHHHHHHhC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCee
Confidence            99999999999999999886532  222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||+||+++.++ .+||+|||++........                                              
T Consensus       126 H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------  159 (268)
T cd06630         126 HRDVKGANLLIDSTGQRLRIADFGAAARLAAKGT----------------------------------------------  159 (268)
T ss_pred             cCCCCHHHEEEcCCCCEEEEcccccccccccccc----------------------------------------------
Confidence            999999999998776 599999999744321100                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                  ..........|+..|+|||.+.+..++.++|||||||++|+|++|..||...
T Consensus       160 ----------------------------~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         160 ----------------------------GAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             ----------------------------cCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence                                        0000112346889999999999888999999999999999999999999765


Q ss_pred             ChHHHHHHH---hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          401 NNEKTLINI---LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       401 ~~~~~~~~i---~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ........+   ...... +....      ....++.++|.+||..||.+||++.    ++++||||+
T Consensus       212 ~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~i~~~l~~~p~~R~~~~----~ll~~~~~~  268 (268)
T cd06630         212 KHSNHLALIFKIASATTA-PSIPE------HLSPGLRDVTLRCLELQPEDRPPSR----ELLKHPVFR  268 (268)
T ss_pred             CCcchHHHHHHHhccCCC-CCCch------hhCHHHHHHHHHHcCCCcccCcCHH----HHhcCcccC
Confidence            433222222   211111 11111      1223589999999999999999998    999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=5.4e-42  Score=338.97  Aligned_cols=266  Identities=27%  Similarity=0.342  Sum_probs=203.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--HHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--IRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +|.+++.||+|+||.||+|.+..     +++.||||.+......  .......+..|+.+++.++|+||+++++++.+.+
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   75 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKE-----TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKS   75 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECC-----CCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCC
Confidence            48899999999999999999876     5788999999765432  1122344566999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+ +|+|.+++.... ..+....                            +..++.||+.||.|||++||+|
T Consensus        76 ~~~lv~e~~-~~~L~~~i~~~~-~~~~~~~----------------------------~~~~~~qi~~al~~lH~~~i~H  125 (298)
T cd07841          76 NINLVFEFM-ETDLEKVIKDKS-IVLTPAD----------------------------IKSYMLMTLRGLEYLHSNWILH  125 (298)
T ss_pred             EEEEEEccc-CCCHHHHHhccC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeee
Confidence            999999999 999999886542 1222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||+++......                                                 
T Consensus       126 ~dl~p~nill~~~~~~~l~dfg~~~~~~~~~-------------------------------------------------  156 (298)
T cd07841         126 RDLKPNNLLIASDGVLKLADFGLARSFGSPN-------------------------------------------------  156 (298)
T ss_pred             cCCChhhEEEcCCCCEEEccceeeeeccCCC-------------------------------------------------
Confidence            9999999999999999999999984432100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......+++.|+|||.+.+. .++.++|||||||++|+|++|.+||.+..
T Consensus       157 -----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~  207 (298)
T cd07841         157 -----------------------------RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS  207 (298)
T ss_pred             -----------------------------ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence                                         011122468889999998653 47899999999999999999999998877


Q ss_pred             hHHHHHHHhcCCCCC-----CC------C------CCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          402 NEKTLINILKKPLTF-----PR------I------GVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~-----p~------~------~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      ..+.+.++.......     +.      .      ......  .......+.+||.+||..||++||++.    |++.||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~----e~l~~~  283 (298)
T cd07841         208 DIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITAR----QALEHP  283 (298)
T ss_pred             cHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHH----HHhhCc
Confidence            766555554311000     00      0      000000  011234688999999999999999998    999999


Q ss_pred             CcCCC
Q 010140          463 FFKGI  467 (517)
Q Consensus       463 ~f~~~  467 (517)
                      ||++.
T Consensus       284 ~~~~~  288 (298)
T cd07841         284 YFSND  288 (298)
T ss_pred             cccCC
Confidence            99874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-42  Score=313.62  Aligned_cols=260  Identities=24%  Similarity=0.341  Sum_probs=204.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  159 (517)
                      ..+++.+++..||.|+.|+||+++.+.     ++...|||.+.+..-  ....+++.+.+.++.+. +.|+||+.+|+|.
T Consensus        89 ~dindl~~l~dlGsGtcG~V~k~~~rs-----~~~iiAVK~M~rt~N--kee~kRILmDldvv~~s~dcpyIV~c~GyFi  161 (391)
T KOG0983|consen   89 ADINDLENLGDLGSGTCGQVWKMRFRS-----TGHIIAVKQMRRTGN--KEENKRILMDLDVVLKSHDCPYIVQCFGYFI  161 (391)
T ss_pred             cChHHhhhHHhhcCCCccceEEEEEcc-----cceEEEEEeecccCC--HHHHHHHHHhhhHHhhccCCCeeeeeeeEEe
Confidence            445778889999999999999999997     788999999986643  34556777788877766 4999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-  238 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-  238 (517)
                      .+..+++.||.| +.-+..++.+-. +.+++...                            -++...++.||.||.++ 
T Consensus       162 ~n~dV~IcMelM-s~C~ekLlkrik-~piPE~il----------------------------Gk~tva~v~AL~YLKeKH  211 (391)
T KOG0983|consen  162 TNTDVFICMELM-STCAEKLLKRIK-GPIPERIL----------------------------GKMTVAIVKALYYLKEKH  211 (391)
T ss_pred             eCchHHHHHHHH-HHHHHHHHHHhc-CCchHHhh----------------------------hhhHHHHHHHHHHHHHhc
Confidence            999999999998 444555554432 22332211                            25678899999999865 


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+||+|||+|+.|++||||||++-++....                                             
T Consensus       212 ~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk---------------------------------------------  246 (391)
T KOG0983|consen  212 GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK---------------------------------------------  246 (391)
T ss_pred             ceeecccCccceEEccCCCEEeecccccceeeccc---------------------------------------------
Confidence            89999999999999999999999999984332110                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                        -.+.-.|-+.|||||.+.-.   .|+..+||||||++++||+||..
T Consensus       247 ----------------------------------AhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~y  292 (391)
T KOG0983|consen  247 ----------------------------------AHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQY  292 (391)
T ss_pred             ----------------------------------ccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccC
Confidence                                              11223689999999999754   48999999999999999999999


Q ss_pred             CCCCC-ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          396 PFKGE-NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       396 Pf~~~-~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||.+. .+.+++.+++...++..+....      .++++++|+..||.+|+.+||...    +||+|||+..
T Consensus       293 Py~~c~tdFe~ltkvln~ePP~L~~~~g------FSp~F~~fv~~CL~kd~r~RP~Y~----~Ll~h~Fi~~  354 (391)
T KOG0983|consen  293 PYKGCKTDFEVLTKVLNEEPPLLPGHMG------FSPDFQSFVKDCLTKDHRKRPKYN----KLLEHPFIKR  354 (391)
T ss_pred             CCCCCCccHHHHHHHHhcCCCCCCcccC------cCHHHHHHHHHHhhcCcccCcchH----HHhcCcceee
Confidence            99985 5678888888755433222222      233589999999999999999998    9999999874

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=3.4e-42  Score=339.60  Aligned_cols=257  Identities=27%  Similarity=0.409  Sum_probs=202.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|.....||+|+||.||++.+..     ++..||||.+.....   .....+.+|+.+++.++||||+++++.+..++.
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~   93 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKH-----TGKQVAVKKMDLRKQ---QRRELLFNEVVIMRDYHHENVVDMYNSYLVGDE   93 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECC-----CCCEEEEEEEecchH---HHHHHHHHHHHHHHhCCCCcHHHHHHheecCCe
Confidence            345556789999999999998876     578899999865432   234556779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|.+++...   .+....                            +..++.||+.||+|||++||+||
T Consensus        94 ~~lv~e~~~~~~L~~~~~~~---~l~~~~----------------------------~~~~~~qi~~~l~~LH~~~ivH~  142 (292)
T cd06658          94 LWVVMEFLEGGALTDIVTHT---RMNEEQ----------------------------IATVCLSVLRALSYLHNQGVIHR  142 (292)
T ss_pred             EEEEEeCCCCCcHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEeec
Confidence            99999999999999887542   222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++......                                                   
T Consensus       143 dlkp~Nill~~~~~~kL~dfg~~~~~~~~---------------------------------------------------  171 (292)
T cd06658         143 DIKSDSILLTSDGRIKLSDFGFCAQVSKE---------------------------------------------------  171 (292)
T ss_pred             CCCHHHEEEcCCCCEEEccCcchhhcccc---------------------------------------------------
Confidence            99999999999999999999987322100                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 ........|++.|+|||.+.+..++.++|||||||++|||++|..||.+....
T Consensus       172 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~  224 (292)
T cd06658         172 ---------------------------VPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL  224 (292)
T ss_pred             ---------------------------cccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       00112345889999999998888999999999999999999999999987776


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..+..+............      .....+.++|.+||..||.+|||+.    |+++||||+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~P~~Rpt~~----~il~~~~~~~~  278 (292)
T cd06658         225 QAMRRIRDNLPPRVKDSH------KVSSVLRGFLDLMLVREPSQRATAQ----ELLQHPFLKLA  278 (292)
T ss_pred             HHHHHHHhcCCCcccccc------ccCHHHHHHHHHHccCChhHCcCHH----HHhhChhhhcc
Confidence            655554432211111111      1122489999999999999999998    99999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.6e-41  Score=329.45  Aligned_cols=250  Identities=20%  Similarity=0.262  Sum_probs=198.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +...+|.+.+.||+|+||.||+|.++.     .++.||+|++..+..    ....+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~-----~~~~~~~K~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   73 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKK-----YSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTR   73 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEec-----CCceEEEEEecCCch----HHHHHHHHHHHHHhCCCCChhheEEEEcC
Confidence            455679999999999999999999886     578899999875532    23456679999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +..+++||||+++++|.+++.......++...                            ++.++.|++.||+|||++|+
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~----------------------------~~~~~~ql~~~l~~lH~~~i  125 (263)
T cd05052          74 EPPFYIITEFMTYGNLLDYLRECNRQEVNAVV----------------------------LLYMATQISSAMEYLEKKNF  125 (263)
T ss_pred             CCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCE
Confidence            99999999999999999988664322232222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++.......                                               
T Consensus       126 ~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~-----------------------------------------------  158 (263)
T cd05052         126 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDT-----------------------------------------------  158 (263)
T ss_pred             eecccCcceEEEcCCCcEEeCCCccccccccce-----------------------------------------------
Confidence            999999999999999999999999984322100                                               


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+
T Consensus       159 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~  208 (263)
T cd05052         159 ------------------------------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  208 (263)
T ss_pred             ------------------------------eeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence                                          000011234668999999998889999999999999999998 9999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+..+....+.... ..+ ....      .+.++.+||.+||+.||++||++.
T Consensus       209 ~~~~~~~~~~~~~~-~~~-~~~~------~~~~~~~li~~cl~~~p~~Rp~~~  253 (263)
T cd05052         209 IDLSQVYELLEKGY-RME-RPEG------CPPKVYELMRACWQWNPSDRPSFA  253 (263)
T ss_pred             CCHHHHHHHHHCCC-CCC-CCCC------CCHHHHHHHHHHccCCcccCCCHH
Confidence            87776666665432 111 1111      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5.4e-42  Score=336.68  Aligned_cols=264  Identities=30%  Similarity=0.436  Sum_probs=203.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+|++..     ++..||+|++...... ......+.+|+.+++.++||||+++++++..+...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~vK~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRE-----TGETVALKKVALRRLE-GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGF   74 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECC-----CCceEEEEEEEccccc-chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCee
Confidence            58999999999999999999876     5788999998754321 12345677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+ +++|.+++.... ..+....                            ++.++.||+.||+|||++||+|+|
T Consensus        75 ~~v~e~~-~~~L~~~~~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H~d  124 (286)
T cd07832          75 VLVMEYM-PSDLSEVLRDEE-RPLPEAQ----------------------------VKSYMRMLLKGVAYMHANGIMHRD  124 (286)
T ss_pred             EEEeccc-CCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecCC
Confidence            9999999 999999886543 2222222                            246789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++........                                                  
T Consensus       125 l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~--------------------------------------------------  154 (286)
T cd07832         125 LKPANLLISADGVLKIADFGLARLFSEEEP--------------------------------------------------  154 (286)
T ss_pred             cCHHHEEEcCCCcEEEeeeeecccccCCCC--------------------------------------------------
Confidence            999999999999999999999843321000                                                  


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......|+..|+|||++.+.. ++.++|||||||++|+|++|.+||.+....
T Consensus       155 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~  207 (286)
T cd07832         155 ---------------------------RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI  207 (286)
T ss_pred             ---------------------------CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH
Confidence                                       0112236899999999987654 689999999999999999999999887766


Q ss_pred             HHHHHHhcCCCC-------------------CCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          404 KTLINILKKPLT-------------------FPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       404 ~~~~~i~~~~~~-------------------~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      ..+..+......                   ++.........  ......+.+||.+||..||++||++.    ++++||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~----~~l~h~  283 (286)
T cd07832         208 EQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAA----EALRHP  283 (286)
T ss_pred             HHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHH----HHhhCc
Confidence            655554431110                   00000000000  01224689999999999999999998    999999


Q ss_pred             CcC
Q 010140          463 FFK  465 (517)
Q Consensus       463 ~f~  465 (517)
                      ||.
T Consensus       284 ~~~  286 (286)
T cd07832         284 YFT  286 (286)
T ss_pred             CcC
Confidence            984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=2.9e-41  Score=332.53  Aligned_cols=271  Identities=38%  Similarity=0.706  Sum_probs=207.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      +|++.+.||.|+||.||+|+......  +++.||+|++....... .....++..|+.++..+ +|+||++++++|+.+.
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~--~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~   78 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHD--SGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDT   78 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCC--CCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCC
Confidence            48899999999999999998753211  56889999997654322 22345667799999999 6999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||+++++|.+++....  .+....                            ++.++.||+.||.|||++|++|
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~----------------------------~~~~~~qi~~al~~lH~~~i~H  128 (290)
T cd05613          79 KLHLILDYINGGELFTHLSQRE--RFKEQE----------------------------VQIYSGEIVLALEHLHKLGIIY  128 (290)
T ss_pred             eEEEEEecCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeec
Confidence            9999999999999999887542  222222                            2356789999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++......                                                 
T Consensus       129 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~-------------------------------------------------  159 (290)
T cd05613         129 RDIKLENILLDSNGHVVLTDFGLSKEFHEDE-------------------------------------------------  159 (290)
T ss_pred             cCCCHHHeEECCCCCEEEeeCccceeccccc-------------------------------------------------
Confidence            9999999999999999999999984321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                  ........|+..|+|||.+.+.  .++.++|||||||++|+|++|..||...
T Consensus       160 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  211 (290)
T cd05613         160 ----------------------------VERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVD  211 (290)
T ss_pred             ----------------------------ccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcC
Confidence                                        0011234688999999998753  3688999999999999999999999754


Q ss_pred             Ch----HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCccccc
Q 010140          401 NN----EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       401 ~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~~  473 (517)
                      ..    .+....+......++..         ....+.+|+.+||+.||++||+.. ..+.+++.||||+.++|+.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  280 (290)
T cd05613         212 GEKNSQAEISRRILKSEPPYPQE---------MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDDLA  280 (290)
T ss_pred             CccccHHHHHHHhhccCCCCCcc---------CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHHHh
Confidence            32    22333333333222221         122489999999999999999653 356799999999999998763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.3e-41  Score=328.77  Aligned_cols=250  Identities=22%  Similarity=0.312  Sum_probs=197.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+.+.      +..+|+|.+......    ...+..|+.+|+.++||||+++++++....
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~------~~~~a~K~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRA------QIKVAIKAINEGAMS----EEDFIEEAKVMMKLSHPKLVQLYGVCTQQK   72 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEecc------CceEEEEecccCCcc----HHHHHHHHHHHHHCCCCCceeEEEEEccCC
Confidence            4679999999999999999998764      357999988654322    235667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++..... .++...                            +..++.||+.||+|||++||+|
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~~-~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H  123 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQG-KLSKDM----------------------------LLSMCQDVCEGMEYLERNSFIH  123 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCcc-CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            99999999999999998865321 222211                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.+||+|||+++......                                                 
T Consensus       124 ~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~-------------------------------------------------  154 (256)
T cd05114         124 RDLAARNCLVSSTGVVKVSDFGMTRYVLDDE-------------------------------------------------  154 (256)
T ss_pred             cccCcceEEEcCCCeEEECCCCCccccCCCc-------------------------------------------------
Confidence            9999999999999999999999874321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||++.+..++.++|||||||++|+|++ |+.||...+
T Consensus       155 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~  206 (256)
T cd05114         155 ----------------------------YTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS  206 (256)
T ss_pred             ----------------------------eeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence                                        000112235668999999998889999999999999999999 999999888


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+....+..+.......  ..      ...+.+||.+||+.||++||++.    ++++
T Consensus       207 ~~~~~~~i~~~~~~~~~~--~~------~~~~~~li~~c~~~~p~~Rps~~----~l~~  253 (256)
T cd05114         207 NYEVVEMISRGFRLYRPK--LA------SMTVYEVMYSCWHEKPEGRPTFA----ELLR  253 (256)
T ss_pred             HHHHHHHHHCCCCCCCCC--CC------CHHHHHHHHHHccCCcccCcCHH----HHHH
Confidence            887777777654322111  11      12489999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.1e-41  Score=333.13  Aligned_cols=279  Identities=38%  Similarity=0.611  Sum_probs=216.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  162 (517)
                      ++|.+.+.||+|+||.||+|+.+.     +++.||+|++.+...........+..|+.++++++ ||||+++++++..++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKE-----TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcC-----CCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc
Confidence            479999999999999999999886     67889999998765444444567778999999998 999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++....  .++....                            ..++.||+.||.|||++|++|
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~----------------------------~~i~~ql~~~l~~Lh~~~~~H  125 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYG--SLDEKCT----------------------------RFYAAEILLALEYLHSKGIIH  125 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeee
Confidence            9999999999999999887642  2333222                            367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||||+||+++.++.++|+|||++.............                       ....                
T Consensus       126 ~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~-----------------------~~~~----------------  166 (280)
T cd05581         126 RDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNK-----------------------GDAT----------------  166 (280)
T ss_pred             cCCCHHHeEECCCCCEEecCCccccccCCccccccCC-----------------------CCCc----------------
Confidence            9999999999999999999999985433211100000                       0000                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                         .................|+..|+|||++.+..++.++|||||||++|+|++|..||...+.
T Consensus       167 -------------------~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  227 (280)
T cd05581         167 -------------------NIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE  227 (280)
T ss_pred             -------------------cccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                               0000000011223455789999999999888899999999999999999999999998887


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ...+..+......++...         ...+.+||.+||+.||.+||++.+..+++++||||
T Consensus       228 ~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         228 YLTFQKILKLEYSFPPNF---------PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HHHHHHHHhcCCCCCCcc---------CHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            777777665554444322         22489999999999999999994444599999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.5e-41  Score=333.36  Aligned_cols=277  Identities=21%  Similarity=0.293  Sum_probs=203.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +.+++|++.+.||+|+||.||+|........ .++.+|+|.+.....  ......+.+|+.+++.++||||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~-~~~~~~ik~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~   78 (283)
T cd05090           2 LPLSAVRFMEELGECAFGKIYKGHLYLPGMD-HAQLVAIKTLKDINN--PQQWGEFQQEASLMAELHHPNIVCLLGVVTQ   78 (283)
T ss_pred             CChhhceeeeeccccCCcceEEEEEecCCCC-CcceEEEEeccCCCC--HHHHHHHHHHHHHHhhCCCCCeeeEEEEEec
Confidence            3457899999999999999999987532221 457899999874321  2334567779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +...|+||||+++|+|.+++..............            ..+ ..........+..++.||+.||+|||++||
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  145 (283)
T cd05090          79 EQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSD------------EDG-TVKSSLDHGDFLHIAIQIAAGMEYLSSHFF  145 (283)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcCCCCccccccc------------ccc-ccccccCHHHHHHHHHHHHHHHHHHHhcCe
Confidence            9999999999999999998864321100000000            000 000111223345788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       146 ~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------  179 (283)
T cd05090         146 VHKDLAARNILIGEQLHVKISDLGLSREIYSADY----------------------------------------------  179 (283)
T ss_pred             ehhccccceEEEcCCCcEEeccccccccccCCcc----------------------------------------------
Confidence            9999999999999999999999999844321000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........++..|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       180 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~  229 (283)
T cd05090         180 ------------------------------YRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYG  229 (283)
T ss_pred             ------------------------------eecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence                                          001122346778999999998889999999999999999998 9999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .........+...... +. ...      ....+.++|.+||+.||++||++.    +++++
T Consensus       230 ~~~~~~~~~~~~~~~~-~~-~~~------~~~~~~~li~~cl~~~p~~Rp~~~----~i~~~  279 (283)
T cd05090         230 FSNQEVIEMVRKRQLL-PC-SED------CPPRMYSLMTECWQEGPSRRPRFK----DIHTR  279 (283)
T ss_pred             CCHHHHHHHHHcCCcC-CC-CCC------CCHHHHHHHHHHcccCcccCcCHH----HHHHH
Confidence            7776666655544322 11 111      122589999999999999999997    66654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.5e-41  Score=329.24  Aligned_cols=250  Identities=21%  Similarity=0.337  Sum_probs=198.7

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|+++++||+|+||.||+|...+      +..||+|.+.....    ..+.+.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~------~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~   71 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFGEVWMGYYNN------STKVAVKTLKPGTM----SVQAFLEEANLMKTLQHDKLVRLYAVVT   71 (261)
T ss_pred             cCchHHeEEeeecCCcCCceEEEEEecC------CceEEEEEccCCch----hHHHHHHHHHHHHhCCCCCeeeEEEEEc
Confidence            3556889999999999999999998653      45699998875432    2356677999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      ..+..|+||||+++|+|.+++.......+.....                            ..++.||+.||+|||+++
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~~~l~~~l~~LH~~~  123 (261)
T cd05072          72 KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKL----------------------------IDFSAQIAEGMAYIERKN  123 (261)
T ss_pred             CCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999987654333333222                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ++||||||+||+++.++.++|+|||++.......                                              
T Consensus       124 i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~----------------------------------------------  157 (261)
T cd05072         124 YIHRDLRAANVLVSESLMCKIADFGLARVIEDNE----------------------------------------------  157 (261)
T ss_pred             eeccccchhhEEecCCCcEEECCCccceecCCCc----------------------------------------------
Confidence            9999999999999999999999999984322100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|+|++ |..||.
T Consensus       158 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~  206 (261)
T cd05072         158 -------------------------------YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYP  206 (261)
T ss_pred             -------------------------------eeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCC
Confidence                                           000112245678999999988889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.........+.... ..+... .      .+.++.+||.+||..||++||++.
T Consensus       207 ~~~~~~~~~~~~~~~-~~~~~~-~------~~~~~~~li~~~l~~~p~~Rp~~~  252 (261)
T cd05072         207 GMSNSDVMSALQRGY-RMPRME-N------CPDELYDIMKTCWKEKAEERPTFD  252 (261)
T ss_pred             CCCHHHHHHHHHcCC-CCCCCC-C------CCHHHHHHHHHHccCCcccCcCHH
Confidence            887777666665442 222211 1      123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.8e-41  Score=332.20  Aligned_cols=266  Identities=27%  Similarity=0.403  Sum_probs=201.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--C
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--S  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~  161 (517)
                      ++|+..+.||.|++|.||+|.+..     +++.||+|++......  ....++.+|+++++.++||||++++++|..  .
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   73 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKN-----TGMIFALKTITTDPNP--DLQKQILRELEINKSCKSPYIVKYYGAFLDESS   73 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECC-----CCeEEEEEEEecCCch--HHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCC
Confidence            479999999999999999999986     6788999998754221  334567779999999999999999998854  4


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+||||++|++|.+++...........                          ...+..++.||+.||+|||+.|++
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~--------------------------~~~~~~i~~~i~~~L~~lH~~~i~  127 (287)
T cd06621          74 SSIGIAMEYCEGGSLDSIYKKVKKRGGRIG--------------------------EKVLGKIAESVLKGLSYLHSRKII  127 (287)
T ss_pred             CeEEEEEEecCCCCHHHHHHHHHhcCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHCCcc
Confidence            478999999999999988764321111111                          112246789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |+||+|+||+++.++.++|+|||++.....                                                  
T Consensus       128 H~dl~~~nil~~~~~~~~l~dfg~~~~~~~--------------------------------------------------  157 (287)
T cd06621         128 HRDIKPSNILLTRKGQVKLCDFGVSGELVN--------------------------------------------------  157 (287)
T ss_pred             cCCCCHHHEEEecCCeEEEeeccccccccc--------------------------------------------------
Confidence            999999999999999999999999732110                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                    .......++..|+|||.+.+..++.++|||||||++|+|++|..||....
T Consensus       158 ------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (287)
T cd06621         158 ------------------------------SLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEG  207 (287)
T ss_pred             ------------------------------cccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCccc
Confidence                                          00112347888999999998889999999999999999999999998662


Q ss_pred             -----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          402 -----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       402 -----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                           ..+....+..............  .......+.+||.+||..||.+|||+.    |+++||||+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rpt~~----eil~~~~~~~~~  273 (287)
T cd06621         208 EPPLGPIELLSYIVNMPNPELKDEPGN--GIKWSEEFKDFIKQCLEKDPTRRPTPW----DMLEHPWIKAQM  273 (287)
T ss_pred             CCCCChHHHHHHHhcCCchhhccCCCC--CCchHHHHHHHHHHHcCCCcccCCCHH----HHHhCccccccc
Confidence                 2333333333221111111000  001123589999999999999999998    999999997643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.1e-41  Score=331.61  Aligned_cols=245  Identities=27%  Similarity=0.497  Sum_probs=189.1

Q ss_pred             CCceEEeee--eccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           84 DHFRLLRRL--GSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        84 ~~y~i~~~L--G~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      ++|++.+.+  |+|+||.||+++.+.     +++.+|+|++.......        .|+.+...+ +||||++++++|..
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~~~~k~~~~~~~~~--------~e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKP-----TQKLFVQKIIKAKNFNA--------IEPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcC-----CCcEEEEEEEehhhcch--------hhHHHHHHhhcCCCEEEEEEEEec
Confidence            467777776  999999999999886     67889999987543211        122222222 79999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||++||+|.+++....  .+.....                            +.++.||+.||.|||+.|+
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~----------------------------~~~~~qi~~~l~~lH~~~i  130 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEV----------------------------KKIIRQLVEALNDLHKHNI  130 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999987642  3333222                            3678999999999999999


Q ss_pred             eeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       241 iHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +||||||+||+++.++ .++|+|||+++....                                                
T Consensus       131 ~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~------------------------------------------------  162 (267)
T PHA03390        131 IHNDIKLENVLYDRAKDRIYLCDYGLCKIIGT------------------------------------------------  162 (267)
T ss_pred             eeCCCCHHHEEEeCCCCeEEEecCccceecCC------------------------------------------------
Confidence            9999999999999988 999999998733210                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                        .....|+..|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       163 ----------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  208 (267)
T PHA03390        163 ----------------------------------PSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKE  208 (267)
T ss_pred             ----------------------------------CccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                                              0123578899999999988899999999999999999999999986


Q ss_pred             CChHHH----HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCC-CCChHHhhcCCCcCC
Q 010140          400 ENNEKT----LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKG  466 (517)
Q Consensus       400 ~~~~~~----~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~-~~~~~ell~hp~f~~  466 (517)
                      ......    +..........+.         .....+.+||.+||+.||.+|++. +    |+|+||||++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~R~~~~~----~~l~h~~~~~  267 (267)
T PHA03390        209 DEDEELDLESLLKRQQKKLPFIK---------NVSKNANDFVQSMLKYNINYRLTNYN----EIIKHPFLKI  267 (267)
T ss_pred             CCcchhhHHHHHHhhcccCCccc---------ccCHHHHHHHHHHhccChhhCCchHH----HHhcCCcccC
Confidence            544322    1111111111111         122358999999999999999975 6    9999999974

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=3.8e-42  Score=337.88  Aligned_cols=263  Identities=27%  Similarity=0.372  Sum_probs=200.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|.++.     .++.||+|++.+..... ...+.+.+|+.+++.++||||+++++++..++.
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~-----~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   74 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKE-----TGQIVAIKKFLESEDDK-MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKR   74 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECC-----CCCEEEEEeHhhccCcc-hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCe
Confidence            479999999999999999999876     57889999986543221 234456679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|..+....  ..+....                            +..++.||+.||+|||++||+||
T Consensus        75 ~~lv~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~~i~~~l~~LH~~~i~h~  124 (286)
T cd07846          75 LYLVFEFVDHTVLDDLEKYP--NGLDESR----------------------------VRKYLFQILRGIEFCHSHNIIHR  124 (286)
T ss_pred             EEEEEecCCccHHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcccc
Confidence            99999999998887765432  1222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.++|+|||++......                                                   
T Consensus       125 ~l~p~ni~~~~~~~~~l~dfg~~~~~~~~---------------------------------------------------  153 (286)
T cd07846         125 DIKPENILVSQSGVVKLCDFGFARTLAAP---------------------------------------------------  153 (286)
T ss_pred             CCCHHHEEECCCCcEEEEeeeeeeeccCC---------------------------------------------------
Confidence            99999999999999999999997432110                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 ........|+..|+|||++.+. .++.++|||||||++|||++|++||.+...
T Consensus       154 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~  206 (286)
T cd07846         154 ---------------------------GEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD  206 (286)
T ss_pred             ---------------------------ccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCch
Confidence                                       0011234578899999998764 478899999999999999999999987766


Q ss_pred             HHHHHHHhcCCCC-------------------CCCCCCCCch---hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          403 EKTLINILKKPLT-------------------FPRIGVSSSK---EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       403 ~~~~~~i~~~~~~-------------------~p~~~~~~~~---~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+....+......                   .+........   .......+.+||.+||+.||++||++.    ++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~----~il~  282 (286)
T cd07846         207 IDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSS----QLLH  282 (286)
T ss_pred             HHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHH----HHhc
Confidence            5544444321110                   1110000000   001234589999999999999999998    9999


Q ss_pred             CCCc
Q 010140          461 HEFF  464 (517)
Q Consensus       461 hp~f  464 (517)
                      ||||
T Consensus       283 ~~~~  286 (286)
T cd07846         283 HEFF  286 (286)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.5e-41  Score=330.24  Aligned_cols=257  Identities=25%  Similarity=0.335  Sum_probs=198.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+...     +++.||||.+.............+..|+.+++.++||||+++++++...+.
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLL-----DRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNE   76 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeC-----CCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCe
Confidence            689999999999999999999886     678899998764332223444567779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++|+|.+++............                          ..+..++.||+.||.|||++||+||
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~i~~~l~~LH~~~i~H~  130 (267)
T cd08228          77 LNIVLELADAGDLSQMIKYFKKQKRLIPE--------------------------RTVWKYFVQLCSAVEHMHSRRVMHR  130 (267)
T ss_pred             EEEEEEecCCCcHHHHHHHhhhccCCCCH--------------------------HHHHHHHHHHHHHHHHHhhCCeeCC
Confidence            99999999999999888653222111111                          1223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++.......                                                  
T Consensus       131 dl~~~nil~~~~~~~~l~d~g~~~~~~~~~--------------------------------------------------  160 (267)
T cd08228         131 DIKPANVFITATGVVKLGDLGLGRFFSSKT--------------------------------------------------  160 (267)
T ss_pred             CCCHHHEEEcCCCCEEECccccceeccchh--------------------------------------------------
Confidence            999999999999999999999874322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh-
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~-  402 (517)
                                                  .......|++.|+|||.+.+..++.++|||||||++|||++|..||..... 
T Consensus       161 ----------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~  212 (267)
T cd08228         161 ----------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  212 (267)
T ss_pred             ----------------------------HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccccc
Confidence                                        001123588899999999988899999999999999999999999976532 


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          403 -EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       403 -~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                       ......+....  .+.....     .....+.+||.+||..+|++||++.    ++++
T Consensus       213 ~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~li~~cl~~~p~~Rp~~~----~vl~  260 (267)
T cd08228         213 LFSLCQKIEQCD--YPPLPTE-----HYSEKLRELVSMCIYPDPDQRPDIG----YVHQ  260 (267)
T ss_pred             HHHHHHHHhcCC--CCCCChh-----hcCHHHHHHHHHHCCCCcccCcCHH----HHHH
Confidence             33333333222  2211111     1223589999999999999999998    7765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2.5e-41  Score=335.04  Aligned_cols=261  Identities=18%  Similarity=0.242  Sum_probs=201.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|.+.+.||+|+||.||+|.+...........||+|+++....  ......+..|+.+++++ +||||++++++
T Consensus        30 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  107 (302)
T cd05055          30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH--SSEREALMSELKIMSHLGNHENIVNLLGA  107 (302)
T ss_pred             ccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC--hHHHHHHHHHHHHHHhccCCCCcceEEEE
Confidence            3456678999999999999999999875432233567899999875422  13345677899999999 79999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..|+||||+++|+|.+++.......++...                            +..++.||+.||+|||+
T Consensus       108 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~----------------------------~~~i~~~i~~~l~~lH~  159 (302)
T cd05055         108 CTIGGPILVITEYCCYGDLLNFLRRKRESFLTLED----------------------------LLSFSYQVAKGMAFLAS  159 (302)
T ss_pred             EecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754322222222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ++|+|+||||+|||++.++.++|+|||+++.......                                           
T Consensus       160 ~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~-------------------------------------------  196 (302)
T cd05055         160 KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSN-------------------------------------------  196 (302)
T ss_pred             CCeehhhhccceEEEcCCCeEEECCCcccccccCCCc-------------------------------------------
Confidence            9999999999999999999999999999843221000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........+++.|+|||++.+..++.++||||+||++|+|++ |..|
T Consensus       197 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p  243 (302)
T cd05055         197 ---------------------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNP  243 (302)
T ss_pred             ---------------------------------eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCC
Confidence                                             000112246788999999998889999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+....+.+.+........+... .      ...++.+||.+||+.+|++||++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~li~~cl~~~p~~Rpt~~  292 (302)
T cd05055         244 YPGMPVDSKFYKLIKEGYRMAQPE-H------APAEIYDIMKTCWDADPLKRPTFK  292 (302)
T ss_pred             cCCCCchHHHHHHHHcCCcCCCCC-C------CCHHHHHHHHHHcCCCchhCcCHH
Confidence            988776665555554332222111 1      122589999999999999999997

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=1.5e-41  Score=333.07  Aligned_cols=262  Identities=26%  Similarity=0.349  Sum_probs=196.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHH-HHhcCCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI-LTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~i-l~~l~HpnIv~l~~~~~~~~  162 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||||+++......  ....+..|+.+ ++.++||||+++++++..++
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~   73 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVP-----TGTIMAVKRIRATVNSQ--EQKRLLMDLDISMRSVDCPYTVTFYGALFREG   73 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcC-----CCcEEEEEEEecCCCcH--HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC
Confidence            479999999999999999999886     67899999987542211  11233345554 66679999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-Cce
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-GIV  241 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~ii  241 (517)
                      ..|+||||++ |+|.+++...........+.                          .+..++.||+.||+|||++ +++
T Consensus        74 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~--------------------------~~~~~~~qi~~~l~~lH~~~~i~  126 (283)
T cd06617          74 DVWICMEVMD-TSLDKFYKKVYDKGLTIPED--------------------------ILGKIAVSIVKALEYLHSKLSVI  126 (283)
T ss_pred             cEEEEhhhhc-ccHHHHHHHhccCCCCCCHH--------------------------HHHHHHHHHHHHHHHHhhcCCee
Confidence            9999999995 68888876532221112111                          2236789999999999998 999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++..+...                                                 
T Consensus       127 h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~-------------------------------------------------  157 (283)
T cd06617         127 HRDVKPSNVLINRNGQVKLCDFGISGYLVDS-------------------------------------------------  157 (283)
T ss_pred             cCCCCHHHEEECCCCCEEEeecccccccccc-------------------------------------------------
Confidence            9999999999999999999999997432100                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC----CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG----QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~----~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                    .......|+..|+|||++.+    ..++.++|+|||||++|+|++|+.||
T Consensus       158 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  207 (283)
T cd06617         158 ------------------------------VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPY  207 (283)
T ss_pred             ------------------------------cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCC
Confidence                                          00112357889999999865    44688999999999999999999999


Q ss_pred             CCC-ChHHHHHHHhcCC-CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          398 KGE-NNEKTLINILKKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       398 ~~~-~~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      ... ...+.+..+.... ...+...        .+.++.+||.+||..+|++||++.    +++.||||+...+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~li~~~l~~~p~~Rp~~~----~il~~~~~~~~~~~  270 (283)
T cd06617         208 DSWKTPFQQLKQVVEEPSPQLPAEK--------FSPEFQDFVNKCLKKNYKERPNYP----ELLQHPFFELHLSK  270 (283)
T ss_pred             CccccCHHHHHHHHhcCCCCCCccc--------cCHHHHHHHHHHccCChhhCcCHH----HHhcCchhhhcccc
Confidence            753 2334444444322 1121111        123589999999999999999998    99999999986543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=4e-41  Score=331.24  Aligned_cols=266  Identities=21%  Similarity=0.248  Sum_probs=202.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|.+.+.||+|+||.||++.+........+..+|+|.+.....   .....+.+|+.++++++||||+++++++...+
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD---NARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCH---HHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            367999999999999999999875432223556799999875422   23456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++.............                 ..........+..++.||+.||+|||++|++|
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H  143 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEG-----------------NRPAELTQSQMLHIAQQIAAGMVYLASQHFVH  143 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHcCCcccccccc-----------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCeee
Confidence            9999999999999999987643211100000                 00011223334578999999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.+.....                                                
T Consensus       144 ~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~------------------------------------------------  175 (288)
T cd05093         144 RDLATRNCLVGENLLVKIGDFGMSRDVYSTDY------------------------------------------------  175 (288)
T ss_pred             cccCcceEEEccCCcEEeccCCccccccCCce------------------------------------------------
Confidence            99999999999999999999999843221000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||++.+..++.++|||||||++|+|++ |..||.+..
T Consensus       176 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~  227 (288)
T cd05093         176 ----------------------------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  227 (288)
T ss_pred             ----------------------------eecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence                                        000112346788999999998889999999999999999998 999999888


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....+..+......  ..      .+..+.+|+.+||+.||.+||++.
T Consensus       228 ~~~~~~~i~~~~~~~~~--~~------~~~~l~~li~~~l~~~p~~Rpt~~  270 (288)
T cd05093         228 NNEVIECITQGRVLQRP--RT------CPKEVYDLMLGCWQREPHMRLNIK  270 (288)
T ss_pred             HHHHHHHHHcCCcCCCC--CC------CCHHHHHHHHHHccCChhhCCCHH
Confidence            77777777665432111  11      122489999999999999999997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.5e-41  Score=328.59  Aligned_cols=260  Identities=28%  Similarity=0.411  Sum_probs=201.7

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-------HHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-------IRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-------~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      +|.+.+.||.|+||.||+|....     +++.||+|.+......       .....+.+..|+.+++.++||||++++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~   76 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVT-----TGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGF   76 (272)
T ss_pred             ceeecceecccCceEEEEEeecC-----CCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEE
Confidence            48899999999999999999876     5678999988642211       12234567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..++||||++|++|.+++...  ..+....                            ++.++.||+.||.|||+
T Consensus        77 ~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~~l~~lH~  126 (272)
T cd06629          77 ETTEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQL----------------------------VRFFTEQVLEGLAYLHS  126 (272)
T ss_pred             eccCCceEEEEecCCCCcHHHHHhhc--cCCCHHH----------------------------HHHHHHHHHHHHHHHhh
Confidence            99999999999999999999988664  2232222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|++||||||+||+++.++.++|+|||+++......                                            
T Consensus       127 ~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~--------------------------------------------  162 (272)
T cd06629         127 KGILHRDLKADNLLVDADGICKISDFGISKKSDDIY--------------------------------------------  162 (272)
T ss_pred             CCeeecCCChhhEEEcCCCeEEEeeccccccccccc--------------------------------------------
Confidence            999999999999999999999999999974321100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~  395 (517)
                                                      .........|+..|+|||.+....  ++.++|+|||||++|+|++|..
T Consensus       163 --------------------------------~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~  210 (272)
T cd06629         163 --------------------------------DNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRR  210 (272)
T ss_pred             --------------------------------cccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCC
Confidence                                            000112345889999999988754  7899999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          396 PFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ||......+.+..+....  ..++.....     .....+.+||.+||..||.+||++.    ++++||||
T Consensus       211 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~~p~~Rps~~----~il~~~~~  272 (272)
T cd06629         211 PWSDEEAIAAMFKLGNKRSAPPIPPDVSM-----NLSPVALDFLNACFTINPDNRPTAR----ELLQHPFI  272 (272)
T ss_pred             CCcCcchHHHHHHhhccccCCcCCccccc-----cCCHHHHHHHHHHhcCChhhCCCHH----HHhhCCCC
Confidence            998766555444443322  112211111     1233589999999999999999987    99999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=2.3e-41  Score=333.99  Aligned_cols=267  Identities=25%  Similarity=0.338  Sum_probs=198.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      ++|++.+.||+|+||.||+|.+..     +++.||||++...... ......+.+|+.+++.+ +||||+++++++....
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~v~lK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~   74 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKN-----TGKLVALKKTRLEMDE-EGIPPTALREISLLQMLSESIYIVRLLDVEHVEE   74 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECC-----CCcEEEEEeehhhccc-cCCchHHHHHHHHHHHccCCCCccceeeeEeecC
Confidence            479999999999999999999886     6788999998654221 12234566799999999 5699999999997665


Q ss_pred             e-----eEEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 Y-----SCLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ~-----~~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .     .|+||||+++ +|.+++...... .....+                          ..++.++.||+.||.|||
T Consensus        75 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~qi~~~L~~LH  127 (295)
T cd07837          75 KNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPA--------------------------KTIKSFMYQLLKGVAHCH  127 (295)
T ss_pred             CCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCH--------------------------HHHHHHHHHHHHHHHHHH
Confidence            5     8999999975 898887654221 111111                          122467899999999999


Q ss_pred             hcCceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      ++||+||||||+||+++. ++.+||+|||+++.+....                                          
T Consensus       128 ~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~------------------------------------------  165 (295)
T cd07837         128 KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPV------------------------------------------  165 (295)
T ss_pred             HCCeeecCCChHHEEEecCCCeEEEeecccceecCCCc------------------------------------------
Confidence            999999999999999998 8899999999984322100                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          .......+++.|+|||++.+. .++.++|||||||++|+|++|.
T Consensus       166 ------------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~  209 (295)
T cd07837         166 ------------------------------------KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQ  209 (295)
T ss_pred             ------------------------------------cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCC
Confidence                                                001122468889999998764 4789999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCC-----C------------CCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          395 TPFKGENNEKTLINILKKPLT-----F------------PRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~-----~------------p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .||.+.+..+.+.++......     +            +.........  .....++.+||.+||..||.+||++.   
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~---  286 (295)
T cd07837         210 PLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAK---  286 (295)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHH---
Confidence            999988776665555431100     0            0000000000  01234689999999999999999998   


Q ss_pred             HHhhcCCCcC
Q 010140          456 VEIKRHEFFK  465 (517)
Q Consensus       456 ~ell~hp~f~  465 (517)
                       |++.||||+
T Consensus       287 -eil~~~~~~  295 (295)
T cd07837         287 -AALTHPYFD  295 (295)
T ss_pred             -HHhcCCCcC
Confidence             999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=8.6e-42  Score=337.51  Aligned_cols=257  Identities=25%  Similarity=0.419  Sum_probs=204.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|.....||+|+||.||+|.+..     +++.||+|++.....   .....+.+|+.+++.++||||+++++.+..++.
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~   92 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKH-----SGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEE   92 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcC-----CCCEEEEEEEEeccc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCe
Confidence            456667789999999999999876     578899999865432   223456679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|..++...   .+....                            +..++.||+.||+|||++||+||
T Consensus        93 ~~iv~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~qi~~~L~~LH~~~ivH~  141 (297)
T cd06659          93 LWVLMEFLQGGALTDIVSQT---RLNEEQ----------------------------IATVCESVLQALCYLHSQGVIHR  141 (297)
T ss_pred             EEEEEecCCCCCHHHHHhhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecC
Confidence            99999999999998876542   222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.+||+|||++..+...                                                   
T Consensus       142 dl~p~Nill~~~~~~kL~dfg~~~~~~~~---------------------------------------------------  170 (297)
T cd06659         142 DIKSDSILLTLDGRVKLSDFGFCAQISKD---------------------------------------------------  170 (297)
T ss_pred             CCCHHHeEEccCCcEEEeechhHhhcccc---------------------------------------------------
Confidence            99999999999999999999987432110                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 ........|+..|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus       171 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~  223 (297)
T cd06659         171 ---------------------------VPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV  223 (297)
T ss_pred             ---------------------------cccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       00112346899999999999888999999999999999999999999887776


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +.+..+.............      ....+.++|.+||+.+|++||++.    ++++||||...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~i~~~l~~~P~~Rps~~----~ll~~~~~~~~  277 (297)
T cd06659         224 QAMKRLRDSPPPKLKNAHK------ISPVLRDFLERMLTREPQERATAQ----ELLDHPFLLQT  277 (297)
T ss_pred             HHHHHHhccCCCCccccCC------CCHHHHHHHHHHhcCCcccCcCHH----HHhhChhhccC
Confidence            6666554433222111111      123489999999999999999998    99999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=6.3e-42  Score=343.41  Aligned_cols=270  Identities=20%  Similarity=0.312  Sum_probs=199.4

Q ss_pred             eeeecc--ceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEE
Q 010140           90 RRLGSG--DIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        90 ~~LG~G--~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      ..||+|  +||+||+|++..     +++.||+|++...... ....+.+.+|+.+++.++||||++++++|..++..|+|
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v   77 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTP-----TGTLVTVRITDLENCT-EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVI   77 (328)
T ss_pred             HHhCCcccCceeEEEEEEcC-----CCcEEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEE
Confidence            356666  999999999876     6789999998754322 13346777899999999999999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||+.+|+|.+++.......++...                            ++.++.||+.||+|||++||+||||||
T Consensus        78 ~e~~~~~~l~~~l~~~~~~~~~~~~----------------------------~~~~~~qi~~aL~~lH~~~ivHrDlkp  129 (328)
T cd08226          78 SPFMAYGSANSLLKTYFPEGMSEAL----------------------------IGNILFGALRGLNYLHQNGYIHRNIKA  129 (328)
T ss_pred             EecccCCCHHHHHHhhcccCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecCCCCH
Confidence            9999999999988765333333222                            236789999999999999999999999


Q ss_pred             CceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccc
Q 010140          248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIR  327 (517)
Q Consensus       248 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      +|||++.++.++++||+.+.........                                                    
T Consensus       130 ~Nill~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  157 (328)
T cd08226         130 SHILISGDGLVSLSGLSHLYSLVRNGQK----------------------------------------------------  157 (328)
T ss_pred             HHEEEeCCCcEEEechHHHhhhhccCcc----------------------------------------------------
Confidence            9999999999999999865221100000                                                    


Q ss_pred             cccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCCCCCCCChHHH
Q 010140          328 EQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT  405 (517)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~  405 (517)
                                         ............++..|+|||++.+.  .++.++|||||||++|+|++|..||.+......
T Consensus       158 -------------------~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~  218 (328)
T cd08226         158 -------------------AKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQM  218 (328)
T ss_pred             -------------------ccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHH
Confidence                               00000000112356779999999774  478999999999999999999999988776655


Q ss_pred             HHHHhcCCCCCCCCC--------------------------------------CCCchhHHhhhhHHHHHHHhccCCccc
Q 010140          406 LINILKKPLTFPRIG--------------------------------------VSSSKEFEEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       406 ~~~i~~~~~~~p~~~--------------------------------------~~~~~~~~~~~~l~dLi~~~L~~dP~~  447 (517)
                      ...+.......|...                                      ............+.+||.+||+.||++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  298 (328)
T cd08226         219 LLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEK  298 (328)
T ss_pred             HHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCccc
Confidence            555444322211100                                      000011123456899999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCCC
Q 010140          448 RIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |||+.    |+++||||+.+.
T Consensus       299 Rpta~----e~l~~~~~~~~~  315 (328)
T cd08226         299 RPSAS----SLLSHAFFKQVK  315 (328)
T ss_pred             CCCHH----HHhhCHHHHHHH
Confidence            99998    999999997654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.3e-41  Score=329.59  Aligned_cols=270  Identities=23%  Similarity=0.300  Sum_probs=205.2

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++..++|++.+.||+|+||.||+|..+....+.....||+|.+......  .....+.+|+.+++.++||||+++++++.
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~   79 (277)
T cd05032           2 ELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM--RERIEFLNEASVMKEFNCHHVVRLLGVVS   79 (277)
T ss_pred             ccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCH--HHHHHHHHHHHHHHhCCCCceeEEEEEEc
Confidence            3556789999999999999999999876443345688999998654321  22345667999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .....|+||||+++|+|.+++..........                    ..........+..++.||+.||.|||++|
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  139 (277)
T cd05032          80 TGQPTLVVMELMAKGDLKSYLRSRRPEAENN--------------------PGLGPPTLQKFIQMAAEIADGMAYLAAKK  139 (277)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcccchhhc--------------------cCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999987643211000                    00001112223467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.......                                             
T Consensus       140 i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------  174 (277)
T cd05032         140 FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDY---------------------------------------------  174 (277)
T ss_pred             ccccccChheEEEcCCCCEEECCcccchhhccCcc---------------------------------------------
Confidence            99999999999999999999999999843221000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|||++ |..||.
T Consensus       175 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  223 (277)
T cd05032         175 -------------------------------YRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQ  223 (277)
T ss_pred             -------------------------------cccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCc
Confidence                                           001122346788999999988889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          399 GENNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +.+..+....+..... ..|.   ..      ...+.+||.+||+.+|++|||+.    +++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~li~~~l~~~p~~Rpt~~----~l~~  273 (277)
T cd05032         224 GLSNEEVLKFVIDGGHLDLPE---NC------PDKLLELMRMCWQYNPKMRPTFL----EIVS  273 (277)
T ss_pred             cCCHHHHHHHHhcCCCCCCCC---CC------CHHHHHHHHHHcCCChhhCCCHH----HHHH
Confidence            8877776666654322 1221   11      23589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=3.1e-41  Score=325.85  Aligned_cols=256  Identities=27%  Similarity=0.497  Sum_probs=204.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|.+.+.||+|+||.||+|..+.     .+..+|+|.+....... .....+.+|+.+++.++|+||+++++.+..+...
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~~-~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~   74 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKS-----DSEHCVIKEIDLTKMPV-KEKEASKKEVILLAKMKHPNIVTFFASFQENGRL   74 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcC-----CCceEEEEEeeHhhccc-hhhHHHHHHHHHHHhCCCCChhhhhheeccCCeE
Confidence            58999999999999999999987     56789999997653322 2334566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+|+||+++++|.+++.......+....                            .+.++.||+.||.|||+++|+|+|
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~l~~lh~~~i~H~d  126 (257)
T cd08225          75 FIVMEYCDGGDLMKRINRQRGVLFSEDQ----------------------------ILSWFVQISLGLKHIHDRKILHRD  126 (257)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999988764332222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          245 LKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       245 LKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      |||+||+++.++ .+||+|||.+.......                                                  
T Consensus       127 l~~~nil~~~~~~~~~l~d~~~~~~~~~~~--------------------------------------------------  156 (257)
T cd08225         127 IKSQNIFLSKNGMVAKLGDFGIARQLNDSM--------------------------------------------------  156 (257)
T ss_pred             CCHHHEEEcCCCCeEEecccccchhccCCc--------------------------------------------------
Confidence            999999999886 46999999874322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                  .......|++.|+|||++.+..++.++|+|||||++|+|++|..||...+..
T Consensus       157 ----------------------------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  208 (257)
T cd08225         157 ----------------------------ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLH  208 (257)
T ss_pred             ----------------------------ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH
Confidence                                        0011235889999999998888999999999999999999999999887776


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +....+.......  ....      ...++.++|.+||..+|++||++.    ++++||||
T Consensus       209 ~~~~~~~~~~~~~--~~~~------~~~~~~~~i~~~l~~~p~~Rpt~~----~ll~~~~~  257 (257)
T cd08225         209 QLVLKICQGYFAP--ISPN------FSRDLRSLISQLFKVSPRDRPSIT----SILKRPFL  257 (257)
T ss_pred             HHHHHHhcccCCC--CCCC------CCHHHHHHHHHHhccChhhCcCHH----HHhhCCCC
Confidence            6666655543221  1111      112589999999999999999998    99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.1e-41  Score=331.72  Aligned_cols=270  Identities=20%  Similarity=0.236  Sum_probs=204.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ...+|.+.+.||+|+||.||+|++...........+++|.+......   ....+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (291)
T cd05094           3 KRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLA---ARKDFQREAELLTNLQHEHIVKFYGVCGDG   79 (291)
T ss_pred             chHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHH---HHHHHHHHHHHHhcCCCCCcceEEEEEccC
Confidence            34679999999999999999998765433345677999998755432   234566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..++||||+++++|.+++.............              .............+..++.||+.||+|||++||+
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~  145 (291)
T cd05094          80 DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDG--------------QPRQAKGELGLSQMLHIASQIASGMVYLASQHFV  145 (291)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCccccccccc--------------ccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            99999999999999999997653211100000              0000011122334457899999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.++|+|||++........                                               
T Consensus       146 H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~-----------------------------------------------  178 (291)
T cd05094         146 HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDY-----------------------------------------------  178 (291)
T ss_pred             ecccCcceEEEccCCcEEECCCCcccccCCCce-----------------------------------------------
Confidence            999999999999999999999999843221000                                               


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........|+..|+|||++.+..++.++|||||||++|||++ |..||...
T Consensus       179 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  229 (291)
T cd05094         179 -----------------------------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL  229 (291)
T ss_pred             -----------------------------eecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         001122357889999999999889999999999999999998 99999888


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..+....+.........  ..      .+..+.+||.+||+.||++||++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~P~~Rpt~~  273 (291)
T cd05094         230 SNTEVIECITQGRVLERP--RV------CPKEVYDIMLGCWQREPQQRLNIK  273 (291)
T ss_pred             CHHHHHHHHhCCCCCCCC--cc------CCHHHHHHHHHHcccChhhCcCHH
Confidence            877766666554332211  11      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=2.2e-41  Score=334.05  Aligned_cols=269  Identities=26%  Similarity=0.343  Sum_probs=201.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++.+.||+|++|.||+|+++.     +++.||+|.+...... ......+..|+.+++.++||||+++++++.++.
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDRV-----TNETIALKKIRLEQED-EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK   74 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecC-----CCcEEEEEehhhcccc-ccchHHHHHHHHHHHhccCCCEeeEEEEEecCC
Confidence            3689999999999999999999876     6788999998654221 123345667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++ ++|.+++.......+...                            .++.++.||+.||+|||++||+|
T Consensus        75 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~----------------------------~~~~~~~qi~~aL~~LH~~~i~H  125 (294)
T PLN00009         75 RLYLVFEYLD-LDLKKHMDSSPDFAKNPR----------------------------LIKTYLYQILRGIAYCHSHRVLH  125 (294)
T ss_pred             eEEEEEeccc-ccHHHHHHhCCCCCcCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeC
Confidence            9999999995 688887755432222211                            12367889999999999999999


Q ss_pred             ccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          243 RDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       243 rDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |||||+||+++. ++.+||+|||++.......                                                
T Consensus       126 ~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~------------------------------------------------  157 (294)
T PLN00009        126 RDLKPQNLLIDRRTNALKLADFGLARAFGIPV------------------------------------------------  157 (294)
T ss_pred             CCCCcceEEEECCCCEEEEcccccccccCCCc------------------------------------------------
Confidence            999999999985 5679999999984322100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .......|++.|+|||.+.+. .++.++|||||||++|+|++|.+||...
T Consensus       158 ------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        158 ------------------------------RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             ------------------------------cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          001123578899999998764 4789999999999999999999999887


Q ss_pred             ChHHHHHHHhcCCCC------------------CCCCCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          401 NNEKTLINILKKPLT------------------FPRIGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~------------------~p~~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +..+.+.++......                  .+........  .......+.++|.+||+.||++||++.    +++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~----~~l~  283 (294)
T PLN00009        208 SEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITAR----AALE  283 (294)
T ss_pred             CHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHH----HHhc
Confidence            766655554321100                  0000000000  001233588999999999999999998    9999


Q ss_pred             CCCcCCCC
Q 010140          461 HEFFKGIN  468 (517)
Q Consensus       461 hp~f~~~~  468 (517)
                      ||||++++
T Consensus       284 ~~~~~~~~  291 (294)
T PLN00009        284 HEYFKDLG  291 (294)
T ss_pred             CchHhHHh
Confidence            99999765

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.9e-41  Score=333.92  Aligned_cols=263  Identities=28%  Similarity=0.361  Sum_probs=195.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|.++.     +++.||+|++.....  ......+.+|+.+++.++|+||+++++++..++
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   76 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRI-----NGQLVALKVISMKTE--EGVPFTAIREASLLKGLKHANIVLLHDIIHTKE   76 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcC-----CCcEEEEEEecccCc--CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCC
Confidence            3689999999999999999999886     577899999865421  122234556999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+. ++|..++.... ..+....                            ++.++.||+.||+|||++||+|
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~~L~~lH~~~i~H  126 (291)
T cd07870          77 TLTFVFEYMH-TDLAQYMIQHP-GGLHPYN----------------------------VRLFMFQLLRGLAYIHGQHILH  126 (291)
T ss_pred             eEEEEEeccc-CCHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCccc
Confidence            9999999995 67777665432 1222221                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       127 ~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--------------------------------------------------  156 (291)
T cd07870         127 RDLKPQNLLISYLGELKLADFGLARAKSIP--------------------------------------------------  156 (291)
T ss_pred             CCCChHHEEEcCCCcEEEeccccccccCCC--------------------------------------------------
Confidence            999999999999999999999987432100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........+++.|+|||++.+. .++.++|||||||++|+|++|..||.+..
T Consensus       157 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~  208 (291)
T cd07870         157 ----------------------------SQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS  208 (291)
T ss_pred             ----------------------------CCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence                                        0001123578899999998764 47889999999999999999999998655


Q ss_pred             hH-HHHHHHhcCCC-C----------CC--------CCCCCCc----hhHHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          402 NE-KTLINILKKPL-T----------FP--------RIGVSSS----KEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       402 ~~-~~~~~i~~~~~-~----------~p--------~~~~~~~----~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      .. +.+..+..... .          .+        .......    ........+.+||.+||+.||.+|||+.    |
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~----~  284 (291)
T cd07870         209 DVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQ----D  284 (291)
T ss_pred             hHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHH----H
Confidence            42 22222221000 0          00        0000000    0011234688999999999999999998    9


Q ss_pred             hhcCCCc
Q 010140          458 IKRHEFF  464 (517)
Q Consensus       458 ll~hp~f  464 (517)
                      ++.||||
T Consensus       285 ~l~h~~~  291 (291)
T cd07870         285 ALLHPYF  291 (291)
T ss_pred             HhcCCCC
Confidence            9999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=8.4e-42  Score=331.50  Aligned_cols=256  Identities=31%  Similarity=0.447  Sum_probs=203.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||.|+||.||+|.++.     +++.+|+|.+......  .....+.+|+.+++.++||||+++++.+...+.
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   73 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRP-----TGKIMAVKTIRLEINE--AIQKQILRELDILHKCNSPYIVGFYGAFYNNGD   73 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcC-----CCcEEEEEEEecccCh--HHHHHHHHHHHHHHHCCCCchhhhheeeecCCE
Confidence            468899999999999999999886     6788999998765322  344566779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCcee
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~iiH  242 (517)
                      .|+||||+++++|.+++.... ..++...                            +..++.||+.||+|||+ .|++|
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~~~~~l~~~l~~lH~~~~i~H  124 (265)
T cd06605          74 ISICMEYMDGGSLDKILKEVQ-GRIPERI----------------------------LGKIAVAVLKGLTYLHEKHKIIH  124 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHcCCCCeec
Confidence            999999999999999887642 2222222                            23678999999999999 99999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||.+.....                                                   
T Consensus       125 ~dl~~~ni~~~~~~~~~l~d~g~~~~~~~---------------------------------------------------  153 (265)
T cd06605         125 RDVKPSNILVNSRGQIKLCDFGVSGQLVN---------------------------------------------------  153 (265)
T ss_pred             CCCCHHHEEECCCCCEEEeecccchhhHH---------------------------------------------------
Confidence            99999999999999999999998732210                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-  401 (517)
                                                   .......|+..|+|||.+.+..++.++|||||||++|+|++|..||.... 
T Consensus       154 -----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~  204 (265)
T cd06605         154 -----------------------------SLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND  204 (265)
T ss_pred             -----------------------------HHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc
Confidence                                         00011468889999999999889999999999999999999999997652 


Q ss_pred             ----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 ----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                          ..+.+..+.....  +.....     ....++.+||.+||..||++||++.    +++.||||+.
T Consensus       205 ~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~li~~~l~~~p~~Rpt~~----~ll~~~~~~~  262 (265)
T cd06605         205 PPDGIFELLQYIVNEPP--PRLPSG-----KFSPDFQDFVNLCLIKDPRERPSYK----ELLEHPFIKK  262 (265)
T ss_pred             ccccHHHHHHHHhcCCC--CCCChh-----hcCHHHHHHHHHHcCCCchhCcCHH----HHhhCchhhc
Confidence                2333444433321  111110     0223589999999999999999998    9999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=5.3e-41  Score=329.89  Aligned_cols=256  Identities=27%  Similarity=0.424  Sum_probs=204.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|...+.||+|++|.||++.+..     .++.+|+|++.....   .....+.+|+.+++.++||||+++++++..++..
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~-----~~~~~~iK~~~~~~~---~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~   91 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKS-----TGRQVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDEL   91 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECC-----CCCEEEEEEEeccch---hHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeE
Confidence            46667899999999999999876     567899998864322   2234466799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+|+||++|++|.+++...   .+....                            +..++.||+.||+|||++||+|||
T Consensus        92 ~~v~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~ql~~~l~~lH~~~i~H~d  140 (285)
T cd06648          92 WVVMEFLEGGALTDIVTHT---RMNEEQ----------------------------IATVCLAVLKALSFLHAQGVIHRD  140 (285)
T ss_pred             EEEEeccCCCCHHHHHHhC---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeecCC
Confidence            9999999999999987652   222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++......                                                    
T Consensus       141 l~p~Nil~~~~~~~~l~d~g~~~~~~~~----------------------------------------------------  168 (285)
T cd06648         141 IKSDSILLTSDGRVKLSDFGFCAQVSKE----------------------------------------------------  168 (285)
T ss_pred             CChhhEEEcCCCcEEEcccccchhhccC----------------------------------------------------
Confidence            9999999999999999999987322100                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                ........|++.|+|||.+.+..++.++|||||||++|+|++|..||...+...
T Consensus       169 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~  222 (285)
T cd06648         169 --------------------------VPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQ  222 (285)
T ss_pred             --------------------------CcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHH
Confidence                                      001122458899999999998889999999999999999999999998887777


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+..+............      .....+.+||.+||+.||++||++.    ++++||||+..
T Consensus       223 ~~~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~~p~~Rpt~~----~il~~~~~~~~  275 (285)
T cd06648         223 AMKRIRDNLPPKLKNLH------KVSPRLRSFLDRMLVRDPAQRATAA----ELLNHPFLAKA  275 (285)
T ss_pred             HHHHHHhcCCCCCcccc------cCCHHHHHHHHHHcccChhhCcCHH----HHccCcccccC
Confidence            66666654322211111      1223589999999999999999998    99999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.2e-41  Score=334.35  Aligned_cols=256  Identities=26%  Similarity=0.387  Sum_probs=202.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||+||+|.+..     .++.||+|++.....  ......+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   75 (284)
T cd06620           3 RNEDLETISDLGAGNGGSVSKVKHIP-----TGTVMAKKVVHIGAK--SSVRKQILRELQIMHECRSPYIVSFYGAFLNE   75 (284)
T ss_pred             cHHHHHHHHHcCCCCCeEEEEEEEcC-----CCcEEEEEEEEecCc--chHHHHHHHHHHHHHHcCCCCcceEeeeEecC
Confidence            34689999999999999999999876     578899998865421  23345677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCc
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGI  240 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~i  240 (517)
                      ..+|+||||+++++|..++....  .+....                            ++.++.|++.||.|||+ .+|
T Consensus        76 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~----------------------------~~~~~~~i~~~l~~LH~~~~i  125 (284)
T cd06620          76 NNICMCMEFMDCGSLDRIYKKGG--PIPVEI----------------------------LGKIAVAVVEGLTYLYNVHRI  125 (284)
T ss_pred             CEEEEEEecCCCCCHHHHHHhcc--CCCHHH----------------------------HHHHHHHHHHHHHHHHHhcCe
Confidence            99999999999999998876532  222222                            23678999999999997 599


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.++|+|||++.....                                                 
T Consensus       126 ~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~-------------------------------------------------  156 (284)
T cd06620         126 MHRDIKPSNILVNSRGQIKLCDFGVSGELIN-------------------------------------------------  156 (284)
T ss_pred             eccCCCHHHEEECCCCcEEEccCCcccchhh-------------------------------------------------
Confidence            9999999999999999999999998732110                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......|+..|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       157 -------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~  205 (284)
T cd06620         157 -------------------------------SIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFS  205 (284)
T ss_pred             -------------------------------hccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence                                           0011346899999999998888999999999999999999999999865


Q ss_pred             ChH-----------HHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNE-----------KTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~-----------~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ...           +....+..... .++..        ....++.+||.+||+.||++||++.    |+++|+||..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~li~~~l~~dp~~Rpt~~----e~~~~~~~~~  271 (284)
T cd06620         206 NIDDDGQDDPMGILDLLQQIVQEPPPRLPSS--------DFPEDLRDFVDACLLKDPTERPTPQ----QLCAMPPFIQ  271 (284)
T ss_pred             chhhhhhhhhhHHHHHHHHHhhccCCCCCch--------hcCHHHHHHHHHHhcCCcccCcCHH----HHhcCccccc
Confidence            442           22333332221 11110        1223589999999999999999998    9999999854

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=1.3e-41  Score=332.75  Aligned_cols=257  Identities=27%  Similarity=0.424  Sum_probs=205.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|+.++.||.|+||.||+|.+..     .+..||+|++.....  ......+.+|+.+++.++||||+++++++.++..
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNR-----TQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTK   76 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEcc-----CCEEEEEEEEecccc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE
Confidence            358889999999999999999876     568899999875422  2345677789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++||+|.+++...   .+....                            +..++.|++.||+|||+++++|+
T Consensus        77 ~~lv~e~~~~~~L~~~i~~~---~l~~~~----------------------------~~~~~~~l~~~l~~lh~~~ivH~  125 (277)
T cd06640          77 LWIIMEYLGGGSALDLLRAG---PFDEFQ----------------------------IATMLKEILKGLDYLHSEKKIHR  125 (277)
T ss_pred             EEEEEecCCCCcHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCccCc
Confidence            99999999999999988642   222221                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.++|+|||++..+...                                                   
T Consensus       126 dl~p~Nil~~~~~~~~l~dfg~~~~~~~~---------------------------------------------------  154 (277)
T cd06640         126 DIKAANVLLSEQGDVKLADFGVAGQLTDT---------------------------------------------------  154 (277)
T ss_pred             CCChhhEEEcCCCCEEEcccccceeccCC---------------------------------------------------
Confidence            99999999999999999999998432210                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 ........++..|+|||++.+..++.++|+|||||++|||++|..||......
T Consensus       155 ---------------------------~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~  207 (277)
T cd06640         155 ---------------------------QIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM  207 (277)
T ss_pred             ---------------------------ccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH
Confidence                                       00112235788999999999888999999999999999999999999887765


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      .....+.....  +...      ......+.+||.+||+.+|++||++.    ++++||||....
T Consensus       208 ~~~~~~~~~~~--~~~~------~~~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~~~~~  260 (277)
T cd06640         208 RVLFLIPKNNP--PTLT------GEFSKPFKEFIDACLNKDPSFRPTAK----ELLKHKFIVKNA  260 (277)
T ss_pred             hHhhhhhcCCC--CCCc------hhhhHHHHHHHHHHcccCcccCcCHH----HHHhChHhhhcc
Confidence            55444332211  1111      12234589999999999999999998    999999997654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.7e-41  Score=332.91  Aligned_cols=276  Identities=18%  Similarity=0.221  Sum_probs=206.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +...+|++.+.||+|+||.||+|.+........++.||||++.....  ......+..|+.++..++||||+++++++..
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~   79 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE--GPLREEFKHEAMMRSRLQHPNIVCLLGVVTK   79 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC--HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC
Confidence            34567899999999999999999987543333567899999975421  1234556779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....++++||+++++|.+++..............              ............+..++.|++.||+|||++||
T Consensus        80 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi  145 (283)
T cd05091          80 EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDD--------------DKTVKSTLEPADFVHIVTQIAAGMEFLSSHHV  145 (283)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcCCCcccccccc--------------ccccccccCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999864321110000000              00001112223345788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       146 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------  179 (283)
T cd05091         146 VHKDLATRNVLVFDKLNVKISDLGLFREVYAADY----------------------------------------------  179 (283)
T ss_pred             cccccchhheEecCCCceEecccccccccccchh----------------------------------------------
Confidence            9999999999999999999999999843221000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       180 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  229 (283)
T cd05091         180 ------------------------------YKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG  229 (283)
T ss_pred             ------------------------------eeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence                                          000122346788999999988889999999999999999998 8999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ....+....+..........  .      .+..+.+|+.+||+.+|.+||++.    ++++
T Consensus       230 ~~~~~~~~~i~~~~~~~~~~--~------~~~~~~~li~~cl~~~p~~RP~~~----~i~~  278 (283)
T cd05091         230 YSNQDVIEMIRNRQVLPCPD--D------CPAWVYTLMLECWNEFPSRRPRFK----DIHS  278 (283)
T ss_pred             CCHHHHHHHHHcCCcCCCCC--C------CCHHHHHHHHHHhCCCcccCCCHH----HHHH
Confidence            88877777777654332111  1      122489999999999999999997    7765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=348.89  Aligned_cols=253  Identities=23%  Similarity=0.354  Sum_probs=200.1

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH-HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce--
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY--  163 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--  163 (517)
                      +...+||+|+|-+||+|.+..     ++..||--.++-.. ......++++..|+.+|+.|+|||||++|++|.+...  
T Consensus        43 k~~evLGrGafKtVYka~De~-----~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~  117 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEE-----EGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKT  117 (632)
T ss_pred             ehhhhcccccceeeeeccccc-----cchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCce
Confidence            566789999999999999976     34445533333222 2334567889999999999999999999999987655  


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC--ce
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IV  241 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~--ii  241 (517)
                      +-+|+|++..|+|..|+++++.  ..+.                            -++.|++||++||.|||++.  ||
T Consensus       118 in~iTEL~TSGtLr~Y~kk~~~--vn~k----------------------------aik~W~RQILkGL~yLHs~~PPII  167 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKHRR--VNIK----------------------------AIKSWCRQILKGLVYLHSQDPPII  167 (632)
T ss_pred             eeeeeecccCCcHHHHHHHhcc--CCHH----------------------------HHHHHHHHHHHHhhhhhcCCCCcc
Confidence            7899999999999999988743  2222                            23589999999999999995  99


Q ss_pred             eccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||++||+|+. .|.|||+|+|||....                                                  
T Consensus       168 HRDLKCDNIFinG~~G~VKIGDLGLAtl~r--------------------------------------------------  197 (632)
T KOG0584|consen  168 HRDLKCDNIFVNGNLGEVKIGDLGLATLLR--------------------------------------------------  197 (632)
T ss_pred             ccccccceEEEcCCcCceeecchhHHHHhh--------------------------------------------------
Confidence            9999999999985 5899999999994322                                                  


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    ......++|||.|||||++. ..|+..+||||||.+|.||+|+.+||..-
T Consensus       198 ------------------------------~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC  246 (632)
T KOG0584|consen  198 ------------------------------KSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSEC  246 (632)
T ss_pred             ------------------------------ccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhh
Confidence                                          11233468999999999998 56999999999999999999999999875


Q ss_pred             Ch-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+ .+++.++..+..+-. ......      +++++||.+||.. ..+|+++.    |||+||||..-
T Consensus       247 ~n~AQIYKKV~SGiKP~s-l~kV~d------Pevr~fIekCl~~-~~~R~sa~----eLL~d~Ff~~d  302 (632)
T KOG0584|consen  247 TNPAQIYKKVTSGIKPAA-LSKVKD------PEVREFIEKCLAT-KSERLSAK----ELLKDPFFDED  302 (632)
T ss_pred             CCHHHHHHHHHcCCCHHH-hhccCC------HHHHHHHHHHhcC-chhccCHH----HHhhChhhccc
Confidence            54 566777766543211 111111      2589999999999 99999998    99999999863

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=8.1e-42  Score=336.05  Aligned_cols=266  Identities=25%  Similarity=0.310  Sum_probs=199.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~  161 (517)
                      .++|...+.||+|+||.||++++..     +++.||+|.+......  .....+..|+.++.++. ||||+++++++...
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~-----~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~   75 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKP-----SGTIMAVKRIRSTVDE--KEQKRLLMDLDVVMRSSDCPYIVKFYGALFRE   75 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECC-----CCCEEEEEEehhccCh--HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecC
Confidence            3567788899999999999999886     6789999998754322  33456677999999996 99999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHh---CCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          162 HYSCLVMEYCPGGDLYAARQR---QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      +..+++|||+. ++|.++...   .....++..                            .+..++.|++.||+|||+.
T Consensus        76 ~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~----------------------------~~~~i~~~i~~~l~~lh~~  126 (288)
T cd06616          76 GDCWICMELMD-ISLDKFYKYVYEVLKSVIPEE----------------------------ILGKIAVATVKALNYLKEE  126 (288)
T ss_pred             CcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHH----------------------------HHHHHHHHHHHHHHHHhhc
Confidence            99999999994 566554322   111222222                            2347789999999999975


Q ss_pred             -CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          239 -GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       239 -~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                       ||+||||||+|||++.++.+||+|||+++.....                                             
T Consensus       127 ~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~---------------------------------------------  161 (288)
T cd06616         127 LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS---------------------------------------------  161 (288)
T ss_pred             CCeeccCCCHHHEEEccCCcEEEeecchhHHhccC---------------------------------------------
Confidence             9999999999999999999999999998432100                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG~  394 (517)
                                                        .......|++.|+|||++.+.   .++.++|||||||++|+|++|+
T Consensus       162 ----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~  207 (288)
T cd06616         162 ----------------------------------IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGK  207 (288)
T ss_pred             ----------------------------------CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCC
Confidence                                              001123588899999999876   5899999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          395 TPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       395 ~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      .||..... .+.+.++.....  +.....  .......++.+||.+||+.||++||++.    ++++||||+...|..
T Consensus       208 ~p~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~----~i~~~~~~~~~~~~~  277 (288)
T cd06616         208 FPYPKWNSVFDQLTQVVKGDP--PILSNS--EEREFSPSFVNFINLCLIKDESKRPKYK----ELLEHPFIKDYEERN  277 (288)
T ss_pred             CCchhcchHHHHHhhhcCCCC--CcCCCc--CCCccCHHHHHHHHHHccCChhhCcCHH----HHhcChhhhchhhcc
Confidence            99976542 222333332221  111111  0012334689999999999999999998    999999999866543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=3e-41  Score=332.87  Aligned_cols=279  Identities=19%  Similarity=0.212  Sum_probs=207.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ..+..++|++.+.||+|+||.||++.............+|+|.+......  .....+.+|+.+++++ +||||++++++
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~~   84 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATE--KDLSDLVSEMEMMKMIGKHKNIINLLGV   84 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCH--HHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            44566789999999999999999999876432234578999998754221  2345577799999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +..++.+|+||||+++|+|..++..............              ............+..++.||+.||+|||+
T Consensus        85 ~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~i~~qi~~al~~LH~  150 (293)
T cd05053          85 CTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDD--------------PRPPEETLTQKDLVSFAYQVARGMEFLAS  150 (293)
T ss_pred             EcCCCCeEEEEEeCCCCcHHHHHHhcCCCcccccccc--------------ccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876421111000000              00011122333456789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       151 ~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~-------------------------------------------  187 (293)
T cd05053         151 KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDY-------------------------------------------  187 (293)
T ss_pred             CCccccccceeeEEEcCCCeEEeCccccccccccccc-------------------------------------------
Confidence            9999999999999999999999999999854321000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........++..|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       188 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p  234 (293)
T cd05053         188 ---------------------------------YRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSP  234 (293)
T ss_pred             ---------------------------------eeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCC
Confidence                                             000111235678999999988889999999999999999997 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+....+....+...... . ...      .....+.+|+.+||..||++|||+.    |++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~-~-~~~------~~~~~~~~li~~~l~~~p~~Rps~~----eil~~  287 (293)
T cd05053         235 YPGIPVEELFKLLKEGYRM-E-KPQ------NCTQELYHLMRDCWHEVPSQRPTFK----QLVED  287 (293)
T ss_pred             CCCCCHHHHHHHHHcCCcC-C-CCC------CCCHHHHHHHHHHcccCcccCcCHH----HHHHH
Confidence            9988777766666544321 1 111      1123589999999999999999997    66653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-41  Score=339.89  Aligned_cols=266  Identities=25%  Similarity=0.331  Sum_probs=196.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|++.+.||+|+||.||+|++..     +++.||||++.....  .....++..|+.++++++||||+++++++...  
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   77 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKP-----TGVKVAIKKISPFEH--QTFCQRTLREIKILRRFKHENIIGILDIIRPPSF   77 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcC-----CCCeEEEEEeccccc--chhHHHHHHHHHHHHhCCCCCcCchhheeecccc
Confidence            689999999999999999999876     678899999864211  12344566799999999999999999987543  


Q ss_pred             ---ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          162 ---HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       162 ---~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                         ...|+||||+. ++|..++...   .+....                            ++.++.||+.||+|||++
T Consensus        78 ~~~~~~~lv~e~~~-~~l~~~~~~~---~l~~~~----------------------------~~~i~~ql~~aL~~LH~~  125 (336)
T cd07849          78 ESFNDVYIVQELME-TDLYKLIKTQ---HLSNDH----------------------------IQYFLYQILRGLKYIHSA  125 (336)
T ss_pred             cccceEEEEehhcc-cCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence               35899999995 5887766542   233222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++........                                           
T Consensus       126 ~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~-------------------------------------------  162 (336)
T cd07849         126 NVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDH-------------------------------------------  162 (336)
T ss_pred             CeeccCCCHHHEEECCCCCEEECcccceeeccccccc-------------------------------------------
Confidence            9999999999999999999999999998432210000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ........||+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       163 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f  210 (336)
T cd07849         163 --------------------------------TGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLF  210 (336)
T ss_pred             --------------------------------cCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                                            001123468999999998765 45899999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCC--------------------CCCCCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLT--------------------FPRIGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~--------------------~p~~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .+.+.......+......                    .+........  ......++.+||.+||+.||++||++.   
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~---  287 (336)
T cd07849         211 PGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVE---  287 (336)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHH---
Confidence            876554433322210000                    0000000000  001234589999999999999999998   


Q ss_pred             HHhhcCCCcCCC
Q 010140          456 VEIKRHEFFKGI  467 (517)
Q Consensus       456 ~ell~hp~f~~~  467 (517)
                       |+++||||+..
T Consensus       288 -e~l~hp~~~~~  298 (336)
T cd07849         288 -EALAHPYLEQY  298 (336)
T ss_pred             -HHhcCcccccc
Confidence             99999999864

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=3.9e-41  Score=326.22  Aligned_cols=256  Identities=26%  Similarity=0.400  Sum_probs=203.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee--cCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE--ASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--~~~  162 (517)
                      +|++++.||.|+||.||+|.+..     +++.||+|++...... .....++..|+.+++.++||||+++++++.  .+.
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKS-----DGKILVWKEIDYGNMT-EKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQ   74 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecC-----CCCEEEEEEEecccCC-HHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCC
Confidence            58999999999999999999886     5678999998654322 233456777999999999999999999775  455


Q ss_pred             eeEEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH----
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH----  236 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH----  236 (517)
                      ..|++|||+++++|.+++.....  ..++..                            .+..++.||+.||+|||    
T Consensus        75 ~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~----------------------------~~~~~~~~i~~~l~~lH~~~~  126 (265)
T cd08217          75 TLYIVMEYCEGGDLAQLIQKCKKERKYIEEE----------------------------FIWRILTQLLLALYECHNRSD  126 (265)
T ss_pred             EEEEEehhccCCCHHHHHHHHhhcccCCCHH----------------------------HHHHHHHHHHHHHHHHhcCcc
Confidence            78999999999999999876422  122222                            22367899999999999    


Q ss_pred             -hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          237 -MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       237 -~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                       +.+|+|+||||+||+++.++.+||+|||++.......                                          
T Consensus       127 ~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~------------------------------------------  164 (265)
T cd08217         127 PGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDS------------------------------------------  164 (265)
T ss_pred             ccCcceecCCCHHHEEEecCCCEEEecccccccccCCc------------------------------------------
Confidence             8999999999999999999999999999984332100                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .......|++.|+|||++.+..++.++|+|||||++|+|++|..
T Consensus       165 ------------------------------------~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~  208 (265)
T cd08217         165 ------------------------------------SFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSP  208 (265)
T ss_pred             ------------------------------------ccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCC
Confidence                                                00123368999999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ||...+.......+......  .....      ....+.+|+.+||+.+|++||++.    ++++|||+
T Consensus       209 p~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~l~~~~l~~~p~~Rp~~~----~il~~~~~  265 (265)
T cd08217         209 PFTARNQLQLASKIKEGKFR--RIPYR------YSSELNEVIKSMLNVDPDKRPSTE----ELLQLPLI  265 (265)
T ss_pred             cccCcCHHHHHHHHhcCCCC--CCccc------cCHHHHHHHHHHccCCcccCCCHH----HHhhCCCC
Confidence            99988766666665554322  11111      123589999999999999999998    99999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=6.7e-41  Score=325.99  Aligned_cols=257  Identities=27%  Similarity=0.401  Sum_probs=195.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..+.+.....||+|+||.||+|++..     ++..||+|.+.....   ...+.+.+|+.+++.++|+||+++++++..+
T Consensus         6 ~~~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~v~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   77 (268)
T cd06624           6 EYDENGERVVLGKGTYGIVYAARDLS-----TQVRIAIKEIPERDS---RYVQPLHEEIALHSYLKHRNIVQYLGSDSEN   77 (268)
T ss_pred             ccccCCceEEEecCCceEEEEeEecC-----CCcEEEEEEecCCCH---HHHHHHHHHHHHHHhcCCCCeeeeeeeeccC
Confidence            44556666789999999999999876     567899998865432   2334667799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++..... .+....                          ..+..++.||+.||+|||++||+
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~--------------------------~~~~~~~~qi~~al~~lH~~~i~  130 (268)
T cd06624          78 GFFKIFMEQVPGGSLSALLRSKWG-PLKDNE--------------------------QTIIFYTKQILEGLKYLHDNQIV  130 (268)
T ss_pred             CEEEEEEecCCCCCHHHHHHHhcc-cCCCcH--------------------------HHHHHHHHHHHHHHHHHHHCCEe
Confidence            999999999999999998875321 110011                          11236789999999999999999


Q ss_pred             eccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||+||+++. ++.++|+|||++......                                                
T Consensus       131 h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~------------------------------------------------  162 (268)
T cd06624         131 HRDIKGDNVLVNTYSGVVKISDFGTSKRLAGI------------------------------------------------  162 (268)
T ss_pred             ecCCCHHHEEEcCCCCeEEEecchhheecccC------------------------------------------------
Confidence            9999999999976 679999999987432100                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                    ........|++.|+|||++.+..  ++.++|||||||++|+|++|..||.
T Consensus       163 ------------------------------~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~  212 (268)
T cd06624         163 ------------------------------NPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFI  212 (268)
T ss_pred             ------------------------------CCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCc
Confidence                                          00011235788999999987643  7889999999999999999999997


Q ss_pred             CCChHHH-HHHHh--cCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          399 GENNEKT-LINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       399 ~~~~~~~-~~~i~--~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....... .....  .....+|.   .      ...++++||.+||+.+|.+||++.    |++.||||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~li~~~l~~~p~~Rpt~~----~ll~~~~~  268 (268)
T cd06624         213 ELGEPQAAMFKVGMFKIHPEIPE---S------LSAEAKNFILRCFEPDPDKRASAH----DLLQDPFL  268 (268)
T ss_pred             cccChhhhHhhhhhhccCCCCCc---c------cCHHHHHHHHHHcCCCchhCCCHH----HHHhCCCC
Confidence            6543221 11111  11111111   1      122589999999999999999998    99999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2e-41  Score=334.20  Aligned_cols=258  Identities=25%  Similarity=0.385  Sum_probs=203.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|.+.+.||+|+||.||++....     +++.||+|.+.....   .....+..|+.+++.++||||+++++++...+
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~   89 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVA-----TGQEVAIKQMNLQQQ---PKKELIINEILVMRENKHPNIVNYLDSYLVGD   89 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcC-----CCCEEEEEEeccccc---hHHHHHHHHHHHHhhcCCCCeeehhheeeeCC
Confidence            3689999999999999999998775     567899999864322   22355677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+|+||+++++|.+++...   .+....                            +..++.|++.||.|||++|++|
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~---~l~~~~----------------------------~~~i~~~l~~al~~LH~~gi~H  138 (293)
T cd06647          90 ELWVVMEYLAGGSLTDVVTET---CMDEGQ----------------------------IAAVCRECLQALEFLHSNQVIH  138 (293)
T ss_pred             cEEEEEecCCCCcHHHHHhhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCEee
Confidence            999999999999999988653   122221                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||++......                                                  
T Consensus       139 ~dL~p~Nili~~~~~~kL~dfg~~~~~~~~--------------------------------------------------  168 (293)
T cd06647         139 RDIKSDNILLGMDGSVKLTDFGFCAQITPE--------------------------------------------------  168 (293)
T ss_pred             ccCCHHHEEEcCCCCEEEccCcceeccccc--------------------------------------------------
Confidence            999999999999999999999987322110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........|++.|+|||.+.+..++.++|||||||++|+|++|..||...+.
T Consensus       169 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~  220 (293)
T cd06647         169 ----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (293)
T ss_pred             ----------------------------ccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh
Confidence                                        0011223588999999999888899999999999999999999999987765


Q ss_pred             HHHHHHHhcCC-CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          403 EKTLINILKKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       403 ~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ......+.... ..++.   .    ......+++||.+||+.+|++||++.    +++.||||+...
T Consensus       221 ~~~~~~~~~~~~~~~~~---~----~~~~~~l~~li~~~l~~~p~~Rp~~~----~il~h~~~~~~~  276 (293)
T cd06647         221 LRALYLIATNGTPELQN---P----EKLSAIFRDFLNRCLEMDVEKRGSAK----ELLQHPFLKIAK  276 (293)
T ss_pred             hhheeehhcCCCCCCCC---c----cccCHHHHHHHHHHccCChhhCcCHH----HHhcCHHHhcCc
Confidence            54433332221 11111   0    01223589999999999999999998    999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=3.1e-41  Score=335.19  Aligned_cols=268  Identities=26%  Similarity=0.358  Sum_probs=195.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++.     +++.||||.+...... ......+.+|+.++++++||||+++++++....
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~aik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   84 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKK-----TKQIVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKA   84 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECC-----CCcEEEEEEEeccCCc-CCchhHHHHHHHHHHhCCCCCccceEEEEeccc
Confidence            4689999999999999999999886     6789999988643211 112233456999999999999999999886543


Q ss_pred             --------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          163 --------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       163 --------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                              ..|+||||+. ++|.+++.... ..+++..                            ++.++.||+.||+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~al~~  134 (310)
T cd07865          85 TPYNRYKGSFYLVFEFCE-HDLAGLLSNKN-VKFTLSE----------------------------IKKVMKMLLNGLYY  134 (310)
T ss_pred             ccccCCCceEEEEEcCCC-cCHHHHHHhcc-cCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence                    4599999995 58887775432 1222222                            23678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++|++||||||+||+++.++.+||+|||++.........                                       
T Consensus       135 lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~---------------------------------------  175 (310)
T cd07865         135 IHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNS---------------------------------------  175 (310)
T ss_pred             HHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCccc---------------------------------------
Confidence            99999999999999999999999999999998543211000                                       


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG  393 (517)
                                                         .........++..|+|||.+.+.. ++.++|||||||++|+|++|
T Consensus       176 -----------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~  220 (310)
T cd07865         176 -----------------------------------KPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTR  220 (310)
T ss_pred             -----------------------------------CCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhC
Confidence                                               000112335788999999987754 78899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCC-------------------ch----hHHhhhhHHHHHHHhccCCcccccC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSS-------------------SK----EFEEVVKLQDLISKLLVKNPKKRIG  450 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~-------------------~~----~~~~~~~l~dLi~~~L~~dP~~R~t  450 (517)
                      ..||.+.+.......+.......+....+.                   ..    .......+.+||.+||..||.+||+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t  300 (310)
T cd07865         221 SPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRID  300 (310)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccC
Confidence            999988766544333322111111000000                   00    0011235789999999999999999


Q ss_pred             CCCChHHhhcCCCc
Q 010140          451 SLKGSVEIKRHEFF  464 (517)
Q Consensus       451 ~~~~~~ell~hp~f  464 (517)
                      ++    |+++||||
T Consensus       301 ~~----e~l~h~~f  310 (310)
T cd07865         301 AD----TALNHDFF  310 (310)
T ss_pred             HH----HHhcCCCC
Confidence            98    99999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=4.7e-42  Score=335.81  Aligned_cols=258  Identities=26%  Similarity=0.416  Sum_probs=203.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|+..+.||+|+||.||+|.+..     .+..||+|++......  .....+.+|+.+++.++||||+++++++..++.
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNR-----TKEVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYITRYYGSYLKGTK   76 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcC-----CCeEEEEEEeccccch--HHHHHHHHHHHHHHcCCCCccHhhhcccccCCc
Confidence            347788899999999999998876     5678999998744322  334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|.+++...   .+....                            ++.++.||+.||.|||++|++|+
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~ivH~  125 (277)
T cd06642          77 LWIIMEYLGGGSALDLLKPG---PLEETY----------------------------IATILREILKGLDYLHSERKIHR  125 (277)
T ss_pred             eEEEEEccCCCcHHHHhhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHhcCCeecc
Confidence            99999999999999887542   222221                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.++|+|||++..+....                                                  
T Consensus       126 dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------  155 (277)
T cd06642         126 DIKAANVLLSEQGDVKLADFGVAGQLTDTQ--------------------------------------------------  155 (277)
T ss_pred             CCChheEEEeCCCCEEEccccccccccCcc--------------------------------------------------
Confidence            999999999999999999999974322100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                  .......|+..|+|||++.+..++.++|||||||++|||++|..||......
T Consensus       156 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~  207 (277)
T cd06642         156 ----------------------------IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM  207 (277)
T ss_pred             ----------------------------hhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh
Confidence                                        0011235788999999999888999999999999999999999999876655


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      .....+.....  +....      .....+.++|.+||+.+|++||++.    ++++||||....+
T Consensus       208 ~~~~~~~~~~~--~~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~~~~~~  261 (277)
T cd06642         208 RVLFLIPKNSP--PTLEG------QYSKPFKEFVEACLNKDPRFRPTAK----ELLKHKFITRYTK  261 (277)
T ss_pred             hHHhhhhcCCC--CCCCc------ccCHHHHHHHHHHccCCcccCcCHH----HHHHhHHHHHHhh
Confidence            54444333221  11111      1223589999999999999999998    9999999976443

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=4.6e-41  Score=325.04  Aligned_cols=251  Identities=22%  Similarity=0.275  Sum_probs=198.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|++.+      +..+|+|.+......    ...+..|+.++++++||||+++++++....
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~------~~~~aik~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRG------QYDVAIKMIKEGSMS----EDEFIEEAKVMMKLSHEKLVQLYGVCTKQR   72 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecC------CCcEEEEEcCCCccc----HHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            4679999999999999999998764      245999988754322    234667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++..... .+....                            +..++.||+.||+|||++|++|
T Consensus        73 ~~~lv~e~~~~~~l~~~i~~~~~-~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H  123 (256)
T cd05113          73 PIYIVTEYMSNGCLLNYLREHGK-RFQPSQ----------------------------LLEMCKDVCEGMAYLESKQFIH  123 (256)
T ss_pred             CcEEEEEcCCCCcHHHHHHhcCC-CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeec
Confidence            99999999999999998876422 222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||||+|||++.++.+||+|||+++......                                                 
T Consensus       124 ~dl~p~nili~~~~~~kl~d~g~~~~~~~~~-------------------------------------------------  154 (256)
T cd05113         124 RDLAARNCLVDDQGCVKVSDFGLSRYVLDDE-------------------------------------------------  154 (256)
T ss_pred             cccCcceEEEcCCCCEEECCCccceecCCCc-------------------------------------------------
Confidence            9999999999999999999999874321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...+
T Consensus       155 ----------------------------~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~  206 (256)
T cd05113         155 ----------------------------YTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN  206 (256)
T ss_pred             ----------------------------eeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC
Confidence                                        000011235678999999998889999999999999999998 999999888


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+....+...........  .      ...+++++.+||+.||.+||++.    +++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~li~~cl~~~p~~Rp~~~----~ll~~  254 (256)
T cd05113         207 NSETVEKVSQGLRLYRPHL--A------SEKVYAIMYSCWHEKAEERPTFQ----QLLSS  254 (256)
T ss_pred             HHHHHHHHhcCCCCCCCCC--C------CHHHHHHHHHHcCCCcccCCCHH----HHHHh
Confidence            7777777766543322111  1      12589999999999999999997    77654

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=1.1e-41  Score=336.05  Aligned_cols=264  Identities=27%  Similarity=0.346  Sum_probs=200.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++.+.||.|+||.||+|+++.     +++.+|+|.++..... ......+.+|+.+++.++||||+++++++... 
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   77 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKK-----TGEIVALKKLKMEKEK-EGFPITSLREINILLKLQHPNIVTVKEVVVGSN   77 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECC-----CCcEEEEEEEeecccc-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecC
Confidence            4679999999999999999999876     5678999999754322 22233456799999999999999999998877 


Q ss_pred             -ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          162 -HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       162 -~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ...|+||||++ ++|.+++..... .+....                            ++.++.||+.||+|||++||
T Consensus        78 ~~~~~lv~e~~~-~~L~~~~~~~~~-~l~~~~----------------------------~~~i~~qi~~aL~~LH~~~i  127 (293)
T cd07843          78 LDKIYMVMEYVE-HDLKSLMETMKQ-PFLQSE----------------------------VKCLMLQLLSGVAHLHDNWI  127 (293)
T ss_pred             CCcEEEEehhcC-cCHHHHHHhccC-CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence             89999999996 599888766431 222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++..+....                                               
T Consensus       128 ~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~-----------------------------------------------  160 (293)
T cd07843         128 LHRDLKTSNLLLNNRGILKICDFGLAREYGSPL-----------------------------------------------  160 (293)
T ss_pred             eeccCCHHHEEECCCCcEEEeecCceeeccCCc-----------------------------------------------
Confidence            999999999999999999999999984432100                                               


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .......+++.|+|||.+.+.. ++.++|||||||++|+|++|.+||..
T Consensus       161 -------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~  209 (293)
T cd07843         161 -------------------------------KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPG  209 (293)
T ss_pred             -------------------------------cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCC
Confidence                                           0011235788999999987654 68999999999999999999999998


Q ss_pred             CChHHHHHHHhcCCCC-----------CCCCC--------C-CCchhH---HhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          400 ENNEKTLINILKKPLT-----------FPRIG--------V-SSSKEF---EEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~-----------~p~~~--------~-~~~~~~---~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      ....+.+.++......           .+...        . .....+   .....+.+||.+||+.||++||++.    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~----  285 (293)
T cd07843         210 KSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAE----  285 (293)
T ss_pred             CChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHH----
Confidence            8776665554321100           00000        0 000000   0234588999999999999999998    


Q ss_pred             HhhcCCCc
Q 010140          457 EIKRHEFF  464 (517)
Q Consensus       457 ell~hp~f  464 (517)
                      |++.||||
T Consensus       286 ell~~~~f  293 (293)
T cd07843         286 DALKHPYF  293 (293)
T ss_pred             HHhcCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=5e-41  Score=335.07  Aligned_cols=260  Identities=21%  Similarity=0.254  Sum_probs=195.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +...+|++.+.||+|+||.||+|++...... ....||+|++.....  .....++..|+.+++.++||||+++++++..
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~   80 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEK-VKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLT   80 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCc-cceeEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC
Confidence            3456899999999999999999997653221 234599999864321  2334567779999999999999999999876


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      . ..++|+||+++|+|.+++..... .++..                            .+..++.||+.||+|||++||
T Consensus        81 ~-~~~~v~e~~~~g~l~~~l~~~~~-~~~~~----------------------------~~~~~~~qi~~~L~~LH~~~i  130 (316)
T cd05108          81 S-TVQLITQLMPFGCLLDYVREHKD-NIGSQ----------------------------YLLNWCVQIAKGMNYLEERRL  130 (316)
T ss_pred             C-CceeeeecCCCCCHHHHHHhccc-cCCHH----------------------------HHHHHHHHHHHHHHHHHhcCe
Confidence            4 57899999999999998876421 12211                            123678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.+......                                             
T Consensus       131 iH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~---------------------------------------------  165 (316)
T cd05108         131 VHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKE---------------------------------------------  165 (316)
T ss_pred             eccccchhheEecCCCcEEEccccccccccCCCcc---------------------------------------------
Confidence            99999999999999999999999998543211000                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......++..|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       166 -------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~  214 (316)
T cd05108         166 -------------------------------YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  214 (316)
T ss_pred             -------------------------------eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence                                           00011234678999999999889999999999999999997 9999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ....+.. .+.......+....       ...++.++|.+||..||.+||++.    +++.+
T Consensus       215 ~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~li~~cl~~~p~~Rps~~----~l~~~  264 (316)
T cd05108         215 IPASEIS-SILEKGERLPQPPI-------CTIDVYMIMVKCWMIDADSRPKFR----ELIIE  264 (316)
T ss_pred             CCHHHHH-HHHhCCCCCCCCCC-------CCHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            7665543 34333333332211       112489999999999999999997    55554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=7.2e-41  Score=324.48  Aligned_cols=259  Identities=28%  Similarity=0.448  Sum_probs=207.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|++|.||+|++..     +++.||+|++......  .....+..|+.++..++||||+++++++.....
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~-----~~~~~~vk~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKP-----TGKIYALKKIHVDGDE--EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGE   73 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcC-----CCcEEEEEEeccCcch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCe
Confidence            468999999999999999999987     6789999998765332  334667789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cCcee
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~iiH  242 (517)
                      .|+||||+++++|.+++...  ..++...                            ...++.||+.||+|||+ +|++|
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~~~~~l~~~l~~lh~~~~~~H  123 (264)
T cd06623          74 ISIVLEYMDGGSLADLLKKV--GKIPEPV----------------------------LAYIARQILKGLDYLHTKRHIIH  123 (264)
T ss_pred             EEEEEEecCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHhccCCCcc
Confidence            99999999999999998764  2222222                            23678999999999999 99999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||+|+||+++.++.++|+|||++.......                                                 
T Consensus       124 ~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~-------------------------------------------------  154 (264)
T cd06623         124 RDIKPSNLLINSKGEVKIADFGISKVLENTL-------------------------------------------------  154 (264)
T ss_pred             CCCCHHHEEECCCCCEEEccCccceecccCC-------------------------------------------------
Confidence            9999999999999999999999874322100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-  401 (517)
                                                   .......|+..|+|||.+.+..++.++||||||+++|+|++|..||.... 
T Consensus       155 -----------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~  205 (264)
T cd06623         155 -----------------------------DQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ  205 (264)
T ss_pred             -----------------------------CcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc
Confidence                                         00113357889999999998889999999999999999999999998774 


Q ss_pred             --hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          402 --NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       402 --~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                        ..+....+......  .....     ..+..+.++|.+||..+|++||++.    |+++||||+..+
T Consensus       206 ~~~~~~~~~~~~~~~~--~~~~~-----~~~~~l~~li~~~l~~~p~~R~~~~----~ll~~~~~~~~~  263 (264)
T cd06623         206 PSFFELMQAICDGPPP--SLPAE-----EFSPEFRDFISACLQKDPKKRPSAA----ELLQHPFIKKAD  263 (264)
T ss_pred             cCHHHHHHHHhcCCCC--CCCcc-----cCCHHHHHHHHHHccCChhhCCCHH----HHHhCHHHHhcc
Confidence              34444444432221  11111     0122589999999999999999998    999999998754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=5.2e-41  Score=326.39  Aligned_cols=253  Identities=26%  Similarity=0.358  Sum_probs=196.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||||.+.............+..|+.+++.++||||+++++++..++.
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~-----~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLL-----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE   76 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecC-----CCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCe
Confidence            579999999999999999999876     578899998875443334445677789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .++||||+++++|.+++...........+                          ..+..++.||+.||.|||++|++|+
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~i~~~l~~LH~~~i~H~  130 (267)
T cd08229          77 LNIVLELADAGDLSRMIKHFKKQKRLIPE--------------------------KTVWKYFVQLCSALEHMHSRRVMHR  130 (267)
T ss_pred             EEEEEEecCCCCHHHHHHHhhccCCCCCH--------------------------HHHHHHHHHHHHHHHHHHHCCeecC
Confidence            99999999999999988653221111111                          1223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||++.......                                                  
T Consensus       131 dl~p~nili~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------  160 (267)
T cd08229         131 DIKPANVFITATGVVKLGDLGLGRFFSSKT--------------------------------------------------  160 (267)
T ss_pred             CCCHHHEEEcCCCCEEECcchhhhccccCC--------------------------------------------------
Confidence            999999999999999999999874321100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh-
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~-  402 (517)
                                                  .......|+..|+|||.+.+..++.++|||||||++|+|++|..||.+... 
T Consensus       161 ----------------------------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  212 (267)
T cd08229         161 ----------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  212 (267)
T ss_pred             ----------------------------cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch
Confidence                                        001234688999999999988899999999999999999999999976543 


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          403 -EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       403 -~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                       ......+....  .+.....     .....+.+||.+||+.||++|||+.
T Consensus       213 ~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~li~~~l~~~p~~Rpt~~  256 (267)
T cd08229         213 LYSLCKKIEQCD--YPPLPSD-----HYSEELRQLVNMCINPDPEKRPDIT  256 (267)
T ss_pred             HHHHhhhhhcCC--CCCCCcc-----cccHHHHHHHHHhcCCCcccCCCHH
Confidence             23333333221  1111111     1223589999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.9e-41  Score=324.16  Aligned_cols=249  Identities=24%  Similarity=0.295  Sum_probs=197.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.+..      .+.||+|.+.....    ....+.+|+.++++++||||+++++++..
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~------~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   72 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWNN------TTPVAVKTLKPGTM----DPKDFLAEAQIMKKLRHPKLIQLYAVCTL   72 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEecC------CeEEEEEeeCCCcc----cHHHHHHHHHHHHHCCCCCccceeEEEec
Confidence            456789999999999999999998754      36799999875432    23446679999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+.+|+||||+++++|.+++.......+.+..                            +..++.|++.||.|||++||
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i  124 (261)
T cd05068          73 EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQ----------------------------LIDMAAQVASGMAYLEAQNY  124 (261)
T ss_pred             CCCeeeeeecccCCcHHHHHhccCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999999998765433333322                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.+||+|||+++.......                                              
T Consensus       125 ~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------  158 (261)
T cd05068         125 IHRDLAARNVLVGENNICKVADFGLARVIKEDIY----------------------------------------------  158 (261)
T ss_pred             eeccCCcceEEEcCCCCEEECCcceEEEccCCcc----------------------------------------------
Confidence            9999999999999999999999999854321000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......++..|+|||++.+..++.++|||||||++|||++ |+.||.+
T Consensus       159 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  207 (261)
T cd05068         159 -------------------------------EAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPG  207 (261)
T ss_pred             -------------------------------cccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence                                           00011123457999999998889999999999999999999 9999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+....+..+.... ..+... .      ....+.+++.+||+.||.+||++.
T Consensus       208 ~~~~~~~~~~~~~~-~~~~~~-~------~~~~~~~li~~~l~~~P~~Rp~~~  252 (261)
T cd05068         208 MTNAEVLQQVDQGY-RMPCPP-G------CPKELYDIMLDCWKEDPDDRPTFE  252 (261)
T ss_pred             CCHHHHHHHHHcCC-CCCCCC-c------CCHHHHHHHHHHhhcCcccCCCHH
Confidence            88777776665432 111111 1      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-41  Score=325.04  Aligned_cols=258  Identities=22%  Similarity=0.267  Sum_probs=200.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++....  ....||||++.....  ......+..|+.+++.++||||+++++++..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGK--KEIDVAIKTLKAGSS--DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR   78 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCC--CcceEEEEEcCCCCC--hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC
Confidence            4689999999999999999999875311  356799999875432  223455677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++..... .+....                            +..++.|++.||+|||++||+|
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~~-~~~~~~----------------------------~~~~~~~l~~~l~~Lh~~~i~H  129 (266)
T cd05033          79 PVMIITEYMENGSLDKFLRENDG-KFTVGQ----------------------------LVGMLRGIASGMKYLSEMNYVH  129 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhccC-CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999876432 222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||+++.+......                                               
T Consensus       130 ~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~-----------------------------------------------  162 (266)
T cd05033         130 RDLAARNILVNSNLVCKVSDFGLSRRLEDSEAT-----------------------------------------------  162 (266)
T ss_pred             CCCCcceEEEcCCCCEEECccchhhcccccccc-----------------------------------------------
Confidence            999999999999999999999998543210000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                   .......+++.|+|||.+.+..++.++|||||||++|+|++ |..||....
T Consensus       163 -----------------------------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~  213 (266)
T cd05033         163 -----------------------------YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS  213 (266)
T ss_pred             -----------------------------eeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC
Confidence                                         00011235678999999998889999999999999999997 999998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+....+..... .+... .      .+..+.+|+.+||+.+|++||++.    |++++
T Consensus       214 ~~~~~~~~~~~~~-~~~~~-~------~~~~l~~li~~cl~~~p~~Rp~~~----ei~~~  261 (266)
T cd05033         214 NQDVIKAVEDGYR-LPPPM-D------CPSALYQLMLDCWQKDRNERPTFS----QIVST  261 (266)
T ss_pred             HHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHcCCCcccCcCHH----HHHHH
Confidence            7776666654322 12111 1      123589999999999999999997    66553

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=7.1e-41  Score=327.56  Aligned_cols=267  Identities=19%  Similarity=0.258  Sum_probs=201.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|.+.+.||+|+||.||+|.+...........||+|.+.....  ......+..|+.+++.++|+||+++++++.+
T Consensus         3 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (277)
T cd05036           3 VPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS--EQDESDFLMEALIMSKFNHQNIVRLIGVSFE   80 (277)
T ss_pred             CCHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc
Confidence            34578999999999999999999987532222457899998864321  1223456779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....|+||||++|++|.+++.........                       ........+..++.||+.||+|||++++
T Consensus        81 ~~~~~lv~e~~~g~~L~~~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~qi~~~l~~LH~~~i  137 (277)
T cd05036          81 RLPRFILLELMAGGDLKSFLRENRPRPER-----------------------PSSLTMKDLLFCARDVAKGCKYLEENHF  137 (277)
T ss_pred             CCCcEEEEecCCCCCHHHHHHHhCCCCCC-----------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999999999999999998765321100                       0011222334788999999999999999


Q ss_pred             eeccCCCCceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       241 iHrDLKp~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||||||+|||++.++   .+||+|||+++.+.....                                           
T Consensus       138 vH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~-------------------------------------------  174 (277)
T cd05036         138 IHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASY-------------------------------------------  174 (277)
T ss_pred             eecccchheEEEeccCCCcceEeccCccccccCCccc-------------------------------------------
Confidence            9999999999998655   699999999854311000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........++..|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       175 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~p  221 (277)
T cd05036         175 ---------------------------------YRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMP  221 (277)
T ss_pred             ---------------------------------eecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCC
Confidence                                             000111234568999999998889999999999999999996 9999


Q ss_pred             CCCCChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+.+..+....+..... ..|.         ..+..+.++|.+||+.||++||++.    ++++|
T Consensus       222 f~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~cl~~~p~~Rps~~----~vl~~  274 (277)
T cd05036         222 YPGRTNQEVMEFVTGGGRLDPPK---------GCPGPVYRIMTDCWQHTPEDRPNFA----TILER  274 (277)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCC---------CCCHHHHHHHHHHcCCCcccCcCHH----HHHHH
Confidence            998877776665544321 1111         1123589999999999999999998    88876

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-42  Score=310.41  Aligned_cols=268  Identities=23%  Similarity=0.316  Sum_probs=203.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .++.++|++.++||+|||+.||+++...     +.+.||+|.+....   .+..+...+|++..++++||||++++++..
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s-----~~~~YAlKkI~c~~---~~~~e~~~rEid~~rkf~s~~vl~l~dh~l   88 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGLS-----TGHLYALKKILCHS---QEDIEEALREIDNHRKFNSPNVLRLVDHQL   88 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeecccC-----cccchhhheeeccc---hHHHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            4567899999999999999999999665     77899999987654   244567778999999999999999998774


Q ss_pred             cC-----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          160 AS-----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       160 ~~-----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      .+     ...||+++|...|+|.+.++....+.-..++.+.+                          .|+.+|++||++
T Consensus        89 ~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL--------------------------~if~gic~gL~~  142 (302)
T KOG2345|consen   89 REEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQIL--------------------------WIFLGICRGLEA  142 (302)
T ss_pred             HhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHH--------------------------HHHHHHHHHHHH
Confidence            33     34899999999999999998766555444444433                          677899999999


Q ss_pred             HHhcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          235 LHMMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       235 LH~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      ||+..  ++||||||.|||+.+++.++|.|||.+....-   ......                                
T Consensus       143 lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i---~i~~~~--------------------------------  187 (302)
T KOG2345|consen  143 LHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPI---QIEGSR--------------------------------  187 (302)
T ss_pred             HhccCCcccccCCCcceeEecCCCceEEEeccCccccce---EeechH--------------------------------
Confidence            99998  99999999999999999999999998743221   000000                                


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHH
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~e  389 (517)
                            .+...                       .++     ..-..|..|+|||.+.-+   ..+.++|||||||+||+
T Consensus       188 ------~a~~l-----------------------Qe~-----a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa  233 (302)
T KOG2345|consen  188 ------QALRL-----------------------QEW-----AEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYA  233 (302)
T ss_pred             ------HHHHH-----------------------HHH-----HHHhCCCcccCchheecccCcccccccchhhhhHHHHH
Confidence                  00000                       000     111368889999998654   35889999999999999


Q ss_pred             HhhCCCCCCCCCh--HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          390 MLYGTTPFKGENN--EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       390 lltG~~Pf~~~~~--~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |+.|..||+....  ..+...+...+..+|.... .+      ..+.+||..||+.||.+||++.    +++.+
T Consensus       234 ~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~-ys------e~l~~lik~mlqvdP~qRP~i~----~ll~~  296 (302)
T KOG2345|consen  234 MMFGESPFERIYQQGGSLALAVQNAQISIPNSSR-YS------EALHQLIKSMLQVDPNQRPTIP----ELLSK  296 (302)
T ss_pred             HHHcCCcchHHhhcCCeEEEeeeccccccCCCCC-cc------HHHHHHHHHHhcCCcccCCCHH----HHHHH
Confidence            9999999974322  1122234455666666544 22      2489999999999999999997    77754

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.5e-40  Score=329.88  Aligned_cols=278  Identities=19%  Similarity=0.236  Sum_probs=207.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCC--CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPM--VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~--~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      ..+..++|.+.+.||+|+||.||+|++....  .......||+|.+.....  ......+.+|+.+++.+ +||||++++
T Consensus        10 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~i~~~~   87 (304)
T cd05101          10 WEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLL   87 (304)
T ss_pred             ccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccc--hHHHHHHHHHHHHHHhhccCCCchhee
Confidence            3456688999999999999999999864321  112346799999875422  23345677899999999 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++......|+||||+++|+|.+++.............              .............+..++.||+.||.||
T Consensus        88 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~qi~~al~~L  153 (304)
T cd05101          88 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYD--------------IARVPDEQMTFKDLVSCTYQVARGMEYL  153 (304)
T ss_pred             EEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccc--------------cccCCcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997653221111100              0011122333444567899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++.+.....                                         
T Consensus       154 H~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~-----------------------------------------  192 (304)
T cd05101         154 ASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDY-----------------------------------------  192 (304)
T ss_pred             HHCCeeecccccceEEEcCCCcEEECCCccceecccccc-----------------------------------------
Confidence            999999999999999999999999999999854321100                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........+++.|+|||++.+..++.++|||||||++|+|++ |.
T Consensus       193 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~  237 (304)
T cd05101         193 -----------------------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG  237 (304)
T ss_pred             -----------------------------------cccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCC
Confidence                                               000112246678999999998889999999999999999998 89


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .||.+.+..+....+........  ..      .....+.+||.+||..+|.+||++.    |+++
T Consensus       238 ~p~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~li~~cl~~~p~~Rps~~----e~l~  291 (304)
T cd05101         238 SPYPGIPVEELFKLLKEGHRMDK--PA------NCTNELYMMMRDCWHAIPSHRPTFK----QLVE  291 (304)
T ss_pred             CCcccCCHHHHHHHHHcCCcCCC--CC------CCCHHHHHHHHHHcccChhhCCCHH----HHHH
Confidence            99998887777766654432111  11      1223589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=3.7e-41  Score=333.98  Aligned_cols=272  Identities=21%  Similarity=0.258  Sum_probs=199.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .+..++|++.+.||+|+||.||+|.++...   ....+|+|.+....  .......+.+|+.++.++ +||||+++++++
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~---~~~~~~ik~~~~~~--~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~   77 (303)
T cd05088           3 VLEWNDIKFQDVIGEGNFGQVLKARIKKDG---LRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGAC   77 (303)
T ss_pred             ccchhhceeeeeecCCCCceEEEEEEccCC---ceeeEEEEEecccC--CHHHHHHHHHHHHHHHHhcCCCCcceEEEEE
Confidence            356689999999999999999999987521   12346777765321  123345667799999999 899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..++..|+||||+++|+|.+++..............              ............++.++.||+.||+|||++
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~qi~~al~~LH~~  143 (303)
T cd05088          78 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI--------------ANSTASTLSSQQLLHFAADVARGMDYLSQK  143 (303)
T ss_pred             CCCCCceEEEEeCCCCcHHHHHHhcccccccccccc--------------cccccCcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999876432111000000              000001122233457899999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++....                                               
T Consensus       144 gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~-----------------------------------------------  176 (303)
T cd05088         144 QFIHRDLAARNILVGENYVAKIADFGLSRGQEV-----------------------------------------------  176 (303)
T ss_pred             CccccccchheEEecCCCcEEeCccccCcccch-----------------------------------------------
Confidence            999999999999999999999999998731100                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........++..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       177 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  224 (303)
T cd05088         177 --------------------------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY  224 (303)
T ss_pred             --------------------------------hhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCc
Confidence                                            000011124667999999988889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+.+..+....+.... .... ...      ....+.+||.+||+.+|++||++.    +++.+
T Consensus       225 ~~~~~~~~~~~~~~~~-~~~~-~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~il~~  276 (303)
T cd05088         225 CGMTCAELYEKLPQGY-RLEK-PLN------CDDEVYDLMRQCWREKPYERPSFA----QILVS  276 (303)
T ss_pred             ccCChHHHHHHHhcCC-cCCC-CCC------CCHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            8877776665554321 1111 111      123589999999999999999998    66654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.8e-40  Score=321.79  Aligned_cols=259  Identities=29%  Similarity=0.470  Sum_probs=202.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|.+.+.||+|+||.||+|....     +++.||+|++...... ......+..|+.+++.++|+||+++++.+...+.+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~   74 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLD-----TGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKV   74 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECC-----CCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEE
Confidence            58999999999999999999876     5788999998765433 34567788899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++|+||+++++|.+++....  .+.....                            +.++.|++.||.|||++||+|+|
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~----------------------------~~i~~~i~~~l~~lh~~~i~H~d  124 (264)
T cd06626          75 YIFMEYCSGGTLEELLEHGR--ILDEHVI----------------------------RVYTLQLLEGLAYLHSHGIVHRD  124 (264)
T ss_pred             EEEEecCCCCcHHHHHhhcC--CCChHHH----------------------------HHHHHHHHHHHHHHHHCCcccCC
Confidence            99999999999999886532  2222222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.+||+|||++.........                                                 
T Consensus       125 l~~~nil~~~~~~~kl~d~g~~~~~~~~~~~-------------------------------------------------  155 (264)
T cd06626         125 IKPANIFLDHNGVIKLGDFGCAVKLKNNTTT-------------------------------------------------  155 (264)
T ss_pred             CCHHHEEECCCCCEEEcccccccccCCCCCc-------------------------------------------------
Confidence            9999999999999999999998443211000                                                 


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC---CCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG---HGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~---~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                               .........|++.|+|||++.+..   ++.++|||||||++|+|++|..||....
T Consensus       156 -------------------------~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~  210 (264)
T cd06626         156 -------------------------MGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD  210 (264)
T ss_pred             -------------------------ccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc
Confidence                                     000012245788999999998776   7899999999999999999999997664


Q ss_pred             h-HHHHHHHhcC-CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 N-EKTLINILKK-PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~-~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      . ......+... ...+|...       .....+.+||.+||+.||.+||++.    +++.|||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~l~~~p~~R~~~~----~i~~~~~~  264 (264)
T cd06626         211 NEFQIMFHVGAGHKPPIPDSL-------QLSPEGKDFLDRCLESDPKKRPTAS----ELLQHPFV  264 (264)
T ss_pred             chHHHHHHHhcCCCCCCCccc-------ccCHHHHHHHHHHccCCcccCCCHH----HHhcCCCC
Confidence            3 3333333322 12222211       1123488999999999999999998    99999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1e-40  Score=327.03  Aligned_cols=269  Identities=19%  Similarity=0.234  Sum_probs=201.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ...+|.+.++||+|+||.||+|..........+..+|+|.+.....   .....+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (280)
T cd05092           3 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE---SARQDFQREAELLTVLQHQHIVRFYGVCTEG   79 (280)
T ss_pred             ChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH---HHHHHHHHHHHHHhcCCCCCCceEEEEEecC
Confidence            3467999999999999999999875432233567899998865432   3345677799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++|+|.+++..............               ...........+..++.||+.||+|||++||+
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~  144 (280)
T cd05092          80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGE---------------DVAPGQLTLGQMLAIASQIASGMVYLASLHFV  144 (280)
T ss_pred             CceEEEEecCCCCCHHHHHHhcCcchhhhcccc---------------cCCccccCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            999999999999999999876532110000000               00011122334457889999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++........                                               
T Consensus       145 H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~-----------------------------------------------  177 (280)
T cd05092         145 HRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY-----------------------------------------------  177 (280)
T ss_pred             cccccHhhEEEcCCCCEEECCCCceeEcCCCce-----------------------------------------------
Confidence            999999999999999999999999743211000                                               


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........+++.|+|||.+.+..++.++|||||||++|||++ |.+||...
T Consensus       178 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  228 (280)
T cd05092         178 -----------------------------YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQL  228 (280)
T ss_pred             -----------------------------eecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccC
Confidence                                         000112245788999999999889999999999999999998 99999887


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ...+....+.........  ..      .+..+.+||.+||+.||.+||++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~cl~~~P~~Rp~~~  272 (280)
T cd05092         229 SNTEAIECITQGRELERP--RT------CPPEVYAIMQGCWQREPQQRMVIK  272 (280)
T ss_pred             CHHHHHHHHHcCccCCCC--CC------CCHHHHHHHHHHccCChhhCCCHH
Confidence            777766666554321111  11      122489999999999999999997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=6.2e-41  Score=327.96  Aligned_cols=254  Identities=27%  Similarity=0.425  Sum_probs=203.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      -|++++.||.|+||.||+|.+..     .+..||||++.....  ......+.+|+.+++.++||||+++++++..++..
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~-----~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   77 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNR-----TQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKL   77 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECC-----CCcEEEEEEeccccc--hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeE
Confidence            47889999999999999998876     568899999864422  23345677899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|.+++...   .+....                            +..++.|++.||.|||++|++|+|
T Consensus        78 ~lv~e~~~~~~l~~~i~~~---~~~~~~----------------------------~~~~~~~l~~~l~~lh~~~i~h~d  126 (277)
T cd06641          78 WIIMEYLGGGSALDLLEPG---PLDETQ----------------------------IATILREILKGLDYLHSEKKIHRD  126 (277)
T ss_pred             EEEEEeCCCCcHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHccCCeecCC
Confidence            9999999999999887642   222221                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++.......                                                   
T Consensus       127 l~p~Ni~i~~~~~~~l~dfg~~~~~~~~~---------------------------------------------------  155 (277)
T cd06641         127 IKAANVLLSEHGEVKLADFGVAGQLTDTQ---------------------------------------------------  155 (277)
T ss_pred             CCHHhEEECCCCCEEEeecccceecccch---------------------------------------------------
Confidence            99999999999999999999874322100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|+..|+|||.+.+...+.++|+|||||++|+|++|..||.......
T Consensus       156 ---------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~  208 (277)
T cd06641         156 ---------------------------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK  208 (277)
T ss_pred             ---------------------------hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH
Confidence                                       00122357889999999988888999999999999999999999998777665


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ....+.....  +.....      ...++.++|.+||..+|.+||++.    ++++||||..
T Consensus       209 ~~~~~~~~~~--~~~~~~------~~~~~~~~i~~~l~~~p~~Rp~~~----~~l~~~~~~~  258 (277)
T cd06641         209 VLFLIPKNNP--PTLEGN------YSKPLKEFVEACLNKEPSFRPTAK----ELLKHKFIVR  258 (277)
T ss_pred             HHHHHhcCCC--CCCCcc------cCHHHHHHHHHHccCChhhCcCHH----HHHhCHHHhh
Confidence            5555543322  111111      123589999999999999999998    9999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.1e-40  Score=322.19  Aligned_cols=255  Identities=30%  Similarity=0.448  Sum_probs=201.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH--HHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +|+..+.||+|+||.||+|....     +++.|++|.+.....  ........+.+|+.+++.++||||+++++++.++.
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   75 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLD-----DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED   75 (258)
T ss_pred             CccccceeeecCCceEEEEEEcC-----CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC
Confidence            47788999999999999999875     568899998864321  11234566778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||+++++|.+++....  .+....                            +..++.||+.||+|||++||+|
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H  125 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKKYG--SFPEPV----------------------------IRLYTRQILLGLEYLHDRNTVH  125 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999999887642  222221                            1357899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||+|+||+++.++.+||+|||++.......                                                 
T Consensus       126 ~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-------------------------------------------------  156 (258)
T cd06632         126 RDIKGANILVDTNGVVKLADFGMAKQVVEFS-------------------------------------------------  156 (258)
T ss_pred             CCCCHHHEEECCCCCEEEccCccceeccccc-------------------------------------------------
Confidence            9999999999999999999999874321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                    ......|++.|+|||.+.... ++.++|+|||||++|+|++|..||....
T Consensus       157 ------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         157 ------------------------------FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             ------------------------------cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc
Confidence                                          012345889999999998776 8999999999999999999999998776


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .......+.... ..+.....      ....+.+||.+||..+|.+||++.    +++.|||+
T Consensus       207 ~~~~~~~~~~~~-~~~~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~----~~l~~~~~  258 (258)
T cd06632         207 GVAAVFKIGRSK-ELPPIPDH------LSDEAKDFILKCLQRDPSLRPTAA----ELLEHPFV  258 (258)
T ss_pred             HHHHHHHHHhcc-cCCCcCCC------cCHHHHHHHHHHhhcCcccCcCHH----HHhcCCCC
Confidence            555555544311 11111111      123589999999999999999998    99999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-41  Score=334.40  Aligned_cols=271  Identities=25%  Similarity=0.320  Sum_probs=195.9

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--c
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--H  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  162 (517)
                      +|++.+.||+|+||.||+|.+...   ..++.||+|++.............+.+|+.+++.++||||+++++++.+.  .
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~---~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   77 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNG---KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADK   77 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCC---CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCc
Confidence            489999999999999999998752   14678999999864322223345566799999999999999999999888  8


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCcc-CccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRF-GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      .+|+||||++ ++|.+++........ .+.+                          ..++.++.||+.||+|||+++|+
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~i~~qi~~~l~~lH~~~i~  130 (316)
T cd07842          78 SVYLLFDYAE-HDLWQIIKFHRQAKRVSIPP--------------------------SMVKSLLWQILNGVHYLHSNWVL  130 (316)
T ss_pred             eEEEEEeCCC-cCHHHHHHhhccCCCcCcCH--------------------------HHHHHHHHHHHHHHHHHHhCCEe
Confidence            8999999995 577776654322111 1111                          12246789999999999999999


Q ss_pred             eccCCCCceEEcc----CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          242 YRDLKPENVLVRE----DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       242 HrDLKp~NILl~~----~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ||||||+|||++.    ++.+||+|||+++.+......                                          
T Consensus       131 h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~------------------------------------------  168 (316)
T cd07842         131 HRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKP------------------------------------------  168 (316)
T ss_pred             eCCCCHHHEEEcCCCCccceEEECCCccccccCCCccc------------------------------------------
Confidence            9999999999999    899999999998543211000                                          


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                       ........+++.|+|||++.+. .++.++|||||||++|+|++|++|
T Consensus       169 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~  215 (316)
T cd07842         169 ---------------------------------LADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPI  215 (316)
T ss_pred             ---------------------------------ccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCC
Confidence                                             0011234688999999998774 478999999999999999999999


Q ss_pred             CCCCChHH---------HHHHHhcC-----------------------CCCCCCCCCCCchhH-----HhhhhHHHHHHH
Q 010140          397 FKGENNEK---------TLINILKK-----------------------PLTFPRIGVSSSKEF-----EEVVKLQDLISK  439 (517)
Q Consensus       397 f~~~~~~~---------~~~~i~~~-----------------------~~~~p~~~~~~~~~~-----~~~~~l~dLi~~  439 (517)
                      |.+.....         .+..++..                       ..............+     ....++.++|.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  295 (316)
T cd07842         216 FKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRK  295 (316)
T ss_pred             CcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHH
Confidence            98654322         11111110                       000000000000000     123458899999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCc
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ||+.||++||++.    |+++||||
T Consensus       296 ~l~~~P~~Rps~~----eil~~~~f  316 (316)
T cd07842         296 LLEYDPTKRITAE----EALEHPYF  316 (316)
T ss_pred             HhcCCcccCcCHH----HHhcCCCC
Confidence            9999999999998    99999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=5.1e-41  Score=338.78  Aligned_cols=294  Identities=19%  Similarity=0.239  Sum_probs=202.5

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|++.+.||+|+||.||+|.+.......+++.||||+++....  ......+.+|+.+|.++ +||||++++++
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~niv~~~~~   79 (343)
T cd05103           2 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGA   79 (343)
T ss_pred             cccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC--hHHHHHHHHHHHHHHhccCCccHhhhcce
Confidence            3456688999999999999999999876543333678899999975422  12345677799999999 78999999998


Q ss_pred             eec-CceeEEEEEecCCCchhHHHHhCCCCccCccchhh-----------hhhhhhhhhh--------cCCcc-------
Q 010140          158 FEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF-----------VFFLLFFFFY--------NNLGF-------  210 (517)
Q Consensus       158 ~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~-----------~~~~l~~~~~--------~~~~~-------  210 (517)
                      +.. +..+|+|||||++|+|.+++...............           +...+.....        ...++       
T Consensus        80 ~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (343)
T cd05103          80 CTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLS  159 (343)
T ss_pred             eecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccc
Confidence            754 45789999999999999998764321110000000           0000000000        00000       


Q ss_pred             -----------ccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCc
Q 010140          211 -----------VHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPK  279 (517)
Q Consensus       211 -----------~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~  279 (517)
                                 ..........+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++........     
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~-----  234 (343)
T cd05103         160 DVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD-----  234 (343)
T ss_pred             cchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcc-----
Confidence                       0001223445567999999999999999999999999999999999999999999843211000     


Q ss_pred             chHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCC
Q 010140          280 LSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVG  359 (517)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  359 (517)
                                                                                             ........+
T Consensus       235 -----------------------------------------------------------------------~~~~~~~~~  243 (343)
T cd05103         235 -----------------------------------------------------------------------YVRKGDARL  243 (343)
T ss_pred             -----------------------------------------------------------------------hhhcCCCCC
Confidence                                                                                   000112235


Q ss_pred             CCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHH
Q 010140          360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLIS  438 (517)
Q Consensus       360 t~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~  438 (517)
                      +..|+|||++.+..++.++|||||||++|+|++ |..||.+......+..........+.... .      ..++.+++.
T Consensus       244 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~  316 (343)
T cd05103         244 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDY-T------TPEMYQTML  316 (343)
T ss_pred             CcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCC-C------CHHHHHHHH
Confidence            678999999998889999999999999999996 99999876544333333322222111111 1      124899999


Q ss_pred             HhccCCcccccCCCCChHHhhcC
Q 010140          439 KLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       439 ~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +||+.||++||++.    ||++|
T Consensus       317 ~cl~~~p~~Rps~~----eil~~  335 (343)
T cd05103         317 DCWHGEPSQRPTFS----ELVEH  335 (343)
T ss_pred             HHccCChhhCcCHH----HHHHH
Confidence            99999999999998    77765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-41  Score=361.26  Aligned_cols=263  Identities=23%  Similarity=0.320  Sum_probs=211.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..+..++.+.||+|+||.||.|...+.........||||.+++..  .......|.+|..+|+.++|||||+++|++-+
T Consensus       689 v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~--~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~  766 (1025)
T KOG1095|consen  689 VPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS--SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD  766 (1025)
T ss_pred             CChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC--CHHHHHHHHHHHHHHhcCCCcceeeEEEeecC
Confidence            4467889999999999999999999875443335569999987653  23566788899999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....+|++|||+||||..+|+......+..                       ..+...++..++.||++|+.||+++++
T Consensus       767 ~~~~~i~leyM~gGDL~sflr~~r~~~~~~-----------------------~~L~~~dLl~~a~dvA~G~~YLe~~~f  823 (1025)
T KOG1095|consen  767 SGPPLILLEYMEGGDLLSFLRESRPAPFQP-----------------------SNLSMRDLLAFALDVAKGMNYLESKHF  823 (1025)
T ss_pred             CCCcEEEehhcccCcHHHHHHhcccccCCC-----------------------CCCCHHHHHHHHHHHhhhhHHHHhCCC
Confidence            999999999999999999998865444332                       122334455889999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||..+|+||+....|||+|||+|+.+.....+                                             
T Consensus       824 vHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yy---------------------------------------------  858 (1025)
T KOG1095|consen  824 VHRDLAARNCLLDERRVVKIADFGLARDIYDKDYY---------------------------------------------  858 (1025)
T ss_pred             cCcchhhhheeecccCcEEEcccchhHhhhhchhe---------------------------------------------
Confidence            99999999999999999999999999633211110                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......-...|||||.+....++.|+|||||||+|||+++ |..||.+
T Consensus       859 -------------------------------r~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~  907 (1025)
T KOG1095|consen  859 -------------------------------RKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPS  907 (1025)
T ss_pred             -------------------------------eccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCC
Confidence                                           00001123457999999999889999999999999999997 9999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .++.+++..++.+..-.++..++        ..+.+||..||+.+|++||++.
T Consensus       908 ~~n~~v~~~~~~ggRL~~P~~CP--------~~ly~lM~~CW~~~pe~RP~F~  952 (1025)
T KOG1095|consen  908 RSNFEVLLDVLEGGRLDPPSYCP--------EKLYQLMLQCWKHDPEDRPSFR  952 (1025)
T ss_pred             cchHHHHHHHHhCCccCCCCCCC--------hHHHHHHHHHccCChhhCccHH
Confidence            99999998777665222222222        2488999999999999999997

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=5.4e-41  Score=329.31  Aligned_cols=262  Identities=27%  Similarity=0.389  Sum_probs=199.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||.|++|.||+|++..     +++.||||++......  .....+..|+.+++.++||||+++++++.+.+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   73 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRT-----TGEIVALKEIHLDAEE--GTPSTAIREISLMKELKHENIVRLHDVIHTENKL   73 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECC-----CCeEEEEEEecccccc--cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcE
Confidence            58999999999999999999876     6788999998754321  2234455699999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          165 CLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      |+||||++ ++|.+++..... ..+.+..                            .+.++.||+.||+|||++||+||
T Consensus        74 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~h~  124 (284)
T cd07836          74 MLVFEYMD-KDLKKYMDTHGVRGALDPNT----------------------------VKSFTYQLLKGIAFCHENRVLHR  124 (284)
T ss_pred             EEEEecCC-ccHHHHHHhcCCCCCcCHHH----------------------------HHHHHHHHHHHHHHHHHCCeeeC
Confidence            99999996 588888765431 1222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||+++.....                                                   
T Consensus       125 dl~p~ni~~~~~~~~~l~d~g~~~~~~~~---------------------------------------------------  153 (284)
T cd07836         125 DLKPQNLLINKRGELKLADFGLARAFGIP---------------------------------------------------  153 (284)
T ss_pred             CCCHHHEEECCCCcEEEeecchhhhhcCC---------------------------------------------------
Confidence            99999999999999999999987432110                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 ........+++.|++||++.+. .++.++|||||||++|+|++|..||.+.+.
T Consensus       154 ---------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  206 (284)
T cd07836         154 ---------------------------VNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNN  206 (284)
T ss_pred             ---------------------------ccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence                                       0001123578899999998764 478999999999999999999999998877


Q ss_pred             HHHHHHHhcCCC------------------CCCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          403 EKTLINILKKPL------------------TFPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       403 ~~~~~~i~~~~~------------------~~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      .+....+.....                  .++.........  ......+.++|.+||+.||.+||++.    ++++||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~----~~l~~~  282 (284)
T cd07836         207 EDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAH----DALQHP  282 (284)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHH----HHhcCC
Confidence            666555432110                  000000000000  01234688999999999999999997    999999


Q ss_pred             Cc
Q 010140          463 FF  464 (517)
Q Consensus       463 ~f  464 (517)
                      ||
T Consensus       283 ~f  284 (284)
T cd07836         283 WF  284 (284)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.1e-40  Score=331.27  Aligned_cols=277  Identities=20%  Similarity=0.238  Sum_probs=202.6

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCC--CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVG--LPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYA  156 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  156 (517)
                      .+..++|.+.+.||+|+||.||+|++.+....  .....+|+|++.....  ......+..|+.+++.+ +||||+++++
T Consensus        14 ~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~~h~~i~~~~~   91 (307)
T cd05098          14 EVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT--EKDLSDLISEMEMMKMIGKHKNIINLLG   91 (307)
T ss_pred             eeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC--hHHHHHHHHHHHHHHHhcCCCCEeeEEE
Confidence            34457899999999999999999987642211  1345799999975421  12345567799999999 7999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++...+..|+||||+++|+|.+++............              +.............+..++.||+.||+|||
T Consensus        92 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  157 (307)
T cd05098          92 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCY--------------NPTQVPEEQLSFKDLVSCAYQVARGMEYLA  157 (307)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCccccccc--------------ccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999765322110000              000001112233345678999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++|++||||||+|||++.++.+||+|||+++.......                                          
T Consensus       158 ~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~------------------------------------------  195 (307)
T cd05098         158 SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY------------------------------------------  195 (307)
T ss_pred             HCCcccccccHHheEEcCCCcEEECCCcccccccccch------------------------------------------
Confidence            99999999999999999999999999999843221000                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        ........+++.|+|||++.+..++.++|||||||++|||++ |..
T Consensus       196 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~  241 (307)
T cd05098         196 ----------------------------------YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS  241 (307)
T ss_pred             ----------------------------------hhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence                                              000111234578999999998889999999999999999998 899


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ||.+....+....+..... .+ ....      ...++.+||.+||..+|.+||++.    ++++
T Consensus       242 p~~~~~~~~~~~~~~~~~~-~~-~~~~------~~~~~~~li~~~l~~~p~~Rps~~----evl~  294 (307)
T cd05098         242 PYPGVPVEELFKLLKEGHR-MD-KPSN------CTNELYMMMRDCWHAVPSQRPTFK----QLVE  294 (307)
T ss_pred             CCCcCCHHHHHHHHHcCCC-CC-CCCc------CCHHHHHHHHHHcccChhhCcCHH----HHHH
Confidence            9988776666655544321 11 1111      123589999999999999999997    5554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-41  Score=327.93  Aligned_cols=257  Identities=25%  Similarity=0.458  Sum_probs=201.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC---CCCccceeeeeecC
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD---HPFLPTLYAEFEAS  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~~  161 (517)
                      .|++.+.||+|+||.||+|.+..     +++.||+|++.....  ......+.+|+.+++.++   ||||+++++++..+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~-----~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVP-----TGRVVALKIINLDTP--DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcC-----CCcEEEEEEecCCCC--chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC
Confidence            48889999999999999999876     678999999864321  123445667999999986   99999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||++|++|.+++...   .++...                            +..++.||+.||.|||+.||+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~---~l~~~~----------------------------~~~i~~~i~~~l~~lh~~~i~  123 (277)
T cd06917          75 PRLWIIMEYAEGGSVRTLMKAG---PIAEKY----------------------------ISVIIREVLVALKYIHKVGVI  123 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHHcc---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999887542   222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||+|+||+++.++.++|+|||++.......                                                
T Consensus       124 H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~------------------------------------------------  155 (277)
T cd06917         124 HRDIKAANILVTNTGNVKLCDFGVAALLNQNS------------------------------------------------  155 (277)
T ss_pred             cCCcCHHHEEEcCCCCEEEccCCceeecCCCc------------------------------------------------
Confidence            99999999999999999999999884332100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .......|+..|+|||.+.+. .++.++|||||||++|+|++|..||.+.
T Consensus       156 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  205 (277)
T cd06917         156 ------------------------------SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV  205 (277)
T ss_pred             ------------------------------cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC
Confidence                                          011233688999999998754 4789999999999999999999999887


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ........+....  .+.....     ....++.++|.+||+.||++||++.    +++.||||+...
T Consensus       206 ~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~i~~~l~~~p~~R~~~~----~il~~~~~~~~~  262 (277)
T cd06917         206 DAFRAMMLIPKSK--PPRLEDN-----GYSKLLREFVAACLDEEPKERLSAE----ELLKSKWIKAHS  262 (277)
T ss_pred             ChhhhhhccccCC--CCCCCcc-----cCCHHHHHHHHHHcCCCcccCcCHH----HHhhChHhhccc
Confidence            6554443332221  1111111     0223589999999999999999998    999999997654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=1e-40  Score=327.89  Aligned_cols=264  Identities=27%  Similarity=0.403  Sum_probs=201.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|.++.     +++.||+|+++..... ......+.+|+.+++.++|+||+++++++..++.
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~-----~~~~v~vK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   74 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKA-----TGEIVAIKKFKESEDD-EDVKKTALREVKVLRQLRHENIVNLKEAFRRKGR   74 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCC-----CCcEEEEehhhhhccc-ccchhHHHHHHHHHHhcCCCCeeehhheEEECCE
Confidence            479999999999999999999886     5688999998754321 2334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++++.|..+....  ..+....                            +..++.||+.||.|||++||+||
T Consensus        75 ~~iv~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~~i~~~l~~LH~~~i~H~  124 (288)
T cd07833          75 LYLVFEYVERTLLELLEASP--GGLPPDA----------------------------VRSYIWQLLQAIAYCHSHNIIHR  124 (288)
T ss_pred             EEEEEecCCCCHHHHHHhcC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecC
Confidence            99999999887666554332  2222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.+||+|||++........                                                 
T Consensus       125 dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~-------------------------------------------------  155 (288)
T cd07833         125 DIKPENILVSESGVLKLCDFGFARALRARPA-------------------------------------------------  155 (288)
T ss_pred             CCCHHHeEECCCCCEEEEeeecccccCCCcc-------------------------------------------------
Confidence            9999999999999999999999843221000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .......|+..|+|||++.+. .++.++|||||||++|+|++|.+||.+...
T Consensus       156 ----------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  207 (288)
T cd07833         156 ----------------------------SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD  207 (288)
T ss_pred             ----------------------------ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                        011234688999999999888 789999999999999999999999987766


Q ss_pred             HHHHHHHhcCCCC-------------------CCCCCCCCch--hH--HhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          403 EKTLINILKKPLT-------------------FPRIGVSSSK--EF--EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       403 ~~~~~~i~~~~~~-------------------~p~~~~~~~~--~~--~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      .+.+..+......                   ++........  .+  ..+.++.+||.+||..+|++||++.    +++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~----~il  283 (288)
T cd07833         208 IDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCD----ELL  283 (288)
T ss_pred             HHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHH----HHh
Confidence            5544433221100                   0000000000  00  1134689999999999999999998    999


Q ss_pred             cCCCc
Q 010140          460 RHEFF  464 (517)
Q Consensus       460 ~hp~f  464 (517)
                      +||||
T Consensus       284 ~~~~f  288 (288)
T cd07833         284 QHPYF  288 (288)
T ss_pred             cCCCC
Confidence            99998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=9.2e-41  Score=331.80  Aligned_cols=257  Identities=26%  Similarity=0.357  Sum_probs=201.5

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ....|.+.+.||+|+||.||+|+...     .++.||+|++.............+.+|+.+++.++||||+++++++.++
T Consensus        13 ~~~~y~~~~~lg~g~~g~vy~~~~~~-----~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~   87 (307)
T cd06607          13 PEKLFTDLREIGHGSFGAVYFARDVR-----TNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLRE   87 (307)
T ss_pred             cchhhhhheeecCCCCeEEEEEEEcC-----CCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeC
Confidence            34679999999999999999999876     5788999998644322234445677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||++ |+|.+++.... ..+...                            .+..++.||+.||.|||++||+
T Consensus        88 ~~~~lv~e~~~-g~l~~~~~~~~-~~l~~~----------------------------~~~~~~~ql~~~L~~LH~~~i~  137 (307)
T cd06607          88 HTAWLVMEYCL-GSASDILEVHK-KPLQEV----------------------------EIAAICHGALQGLAYLHSHERI  137 (307)
T ss_pred             CeEEEEHHhhC-CCHHHHHHHcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCce
Confidence            99999999996 57777665432 122221                            1236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||+|+||+++.++.++|+|||++.....                                                  
T Consensus       138 H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~--------------------------------------------------  167 (307)
T cd06607         138 HRDIKAGNILLTEPGTVKLADFGSASLVSP--------------------------------------------------  167 (307)
T ss_pred             ecCCCcccEEECCCCCEEEeecCcceecCC--------------------------------------------------
Confidence            999999999999999999999998732110                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .....|++.|+|||++.   ...++.++|||||||++|||++|..||.
T Consensus       168 --------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~  215 (307)
T cd06607         168 --------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  215 (307)
T ss_pred             --------------------------------CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCC
Confidence                                            11235788999999985   3457889999999999999999999998


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +.+.......+......  .....     .....+.+||.+||..||++||++.    +++.||||..
T Consensus       216 ~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~~~  272 (307)
T cd06607         216 NMNAMSALYHIAQNDSP--TLSSN-----DWSDYFRNFVDSCLQKIPQDRPSSE----ELLKHRFVLR  272 (307)
T ss_pred             CccHHHHHHHHhcCCCC--CCCch-----hhCHHHHHHHHHHhcCChhhCcCHH----HHhcChhhcc
Confidence            87766655555433211  11100     1223589999999999999999998    9999999975

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.4e-40  Score=322.79  Aligned_cols=248  Identities=24%  Similarity=0.297  Sum_probs=193.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.++||+|+||.||+|++..     . ..||+|++.....    ....+.+|+.+++.++||||+++++.+..
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~-----~-~~valK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~~   72 (262)
T cd05071           3 IPRESLRLEVKLGQGCFGEVWMGTWNG-----T-TRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE   72 (262)
T ss_pred             CChHHeeEeeecCCCCCCcEEEEEecC-----C-ceEEEEecccCcc----CHHHHHHHHHHHHhCCCCCcceEEEEECC
Confidence            445789999999999999999998764     2 4599999975432    12456779999999999999999998754


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ...|+||||+++|+|.+++.......+++...                            ..++.|++.||+|||++||
T Consensus        73 -~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~aL~~lH~~~i  123 (262)
T cd05071          73 -EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQL----------------------------VDMAAQIASGMAYVERMNY  123 (262)
T ss_pred             -CCcEEEEEcCCCCcHHHHHhhccccCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCc
Confidence             56899999999999999987643322322222                            3678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.++|+|||.++.+.....                                              
T Consensus       124 ~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~----------------------------------------------  157 (262)
T cd05071         124 VHRDLRAANILVGENLVCKVADFGLARLIEDNEY----------------------------------------------  157 (262)
T ss_pred             cccccCcccEEEcCCCcEEeccCCceeecccccc----------------------------------------------
Confidence            9999999999999999999999999843321000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......++..|+|||++.+..++.++|||||||++|+|++ |..||.+
T Consensus       158 -------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~  206 (262)
T cd05071         158 -------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG  206 (262)
T ss_pred             -------------------------------ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence                                           00012246778999999988889999999999999999999 8999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ....+....+..... .+. ..      .....+.+||.+||+.||++||++.
T Consensus       207 ~~~~~~~~~~~~~~~-~~~-~~------~~~~~l~~li~~~l~~~p~~Rp~~~  251 (262)
T cd05071         207 MVNREVLDQVERGYR-MPC-PP------ECPESLHDLMCQCWRKEPEERPTFE  251 (262)
T ss_pred             CChHHHHHHHhcCCC-CCC-cc------ccCHHHHHHHHHHccCCcccCCCHH
Confidence            877776666654321 111 11      1223589999999999999999986

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=2.4e-40  Score=319.20  Aligned_cols=256  Identities=32%  Similarity=0.522  Sum_probs=207.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||.|+||.||+|.+..     +++.||+|++...... ......+..|+++++.++|||++++++.+..+...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~   74 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKS-----DGKLYVLKEIDLSNMS-EKEREDALNEVKILKKLNHPNIIKYYESFEEKGKL   74 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcC-----CCcEEEEEEeecccCC-hHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEE
Confidence            58999999999999999999876     5788999998754322 23344566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          165 CLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++||||+++++|.+++.....  ..++...                            +..++.||+.||.|||++|++|
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~----------------------------~~~i~~~i~~~l~~lh~~~~~H  126 (258)
T cd08215          75 CIVMEYADGGDLSQKIKKQKKEGKPFPEEQ----------------------------ILDWFVQLCLALKYLHSRKILH  126 (258)
T ss_pred             EEEEEecCCCcHHHHHHHhhccCCCcCHHH----------------------------HHHHHHHHHHHHHHHHhCCEec
Confidence            999999999999998876531  2222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||+|+||+++.++.++|+|||++.......                                                 
T Consensus       127 ~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-------------------------------------------------  157 (258)
T cd08215         127 RDIKPQNIFLTSNGLVKLGDFGISKVLSSTV-------------------------------------------------  157 (258)
T ss_pred             ccCChHHeEEcCCCcEEECCccceeecccCc-------------------------------------------------
Confidence            9999999999999999999999874322100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   .......|++.|+|||.+.+..++.++||||+|+++|+|++|..||...+.
T Consensus       158 -----------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  208 (258)
T cd08215         158 -----------------------------DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL  208 (258)
T ss_pred             -----------------------------ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH
Confidence                                         011223688999999999988899999999999999999999999988877


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .+....+........  ....      ...+.++|.+||..+|++||++.    ++++||||
T Consensus       209 ~~~~~~~~~~~~~~~--~~~~------~~~~~~~i~~~l~~~p~~Rp~~~----~ll~~~~~  258 (258)
T cd08215         209 LELALKILKGQYPPI--PSQY------SSELRNLVSSLLQKDPEERPSIA----QILQSPFI  258 (258)
T ss_pred             HHHHHHHhcCCCCCC--CCCC------CHHHHHHHHHHcCCChhhCcCHH----HHhcCCCC
Confidence            776666655432211  1111      22589999999999999999998    99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=7.6e-41  Score=324.10  Aligned_cols=248  Identities=25%  Similarity=0.325  Sum_probs=198.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ...+|+++++||.|+||.||+|.++.      ++.+|+|++......   ....+..|+.+++.++||||+++++++...
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~------~~~~~~k~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   74 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKN------RVRVAIKILKSDDLL---KQQDFQKEVQALKRLRHKHLISLFAVCSVG   74 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecC------CCcEEEEeccccchh---hHHHHHHHHHHHhcCCCcchhheeeeEecC
Confidence            34679999999999999999999874      467999998765432   234566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||+++|+|.+++.......+.....                            +.++.||+.||.|||++||+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~~i~~al~~lH~~~i~  126 (261)
T cd05148          75 EPVYIITELMEKGSLLAFLRSPEGQVLPVASL----------------------------IDMACQVAEGMAYLEEQNSI  126 (261)
T ss_pred             CCeEEEEeecccCCHHHHHhcCCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999987654333333222                            36789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.+||+|||++.......                                                
T Consensus       127 h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~------------------------------------------------  158 (261)
T cd05148         127 HRDLAARNILVGEDLVCKVADFGLARLIKEDV------------------------------------------------  158 (261)
T ss_pred             ccccCcceEEEcCCceEEEccccchhhcCCcc------------------------------------------------
Confidence            99999999999999999999999984321100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                    .......++..|+|||++.+..++.++|||||||++|+|++ |..||.+.
T Consensus       159 ------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~  208 (261)
T cd05148         159 ------------------------------YLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM  208 (261)
T ss_pred             ------------------------------ccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC
Confidence                                          00012235678999999998889999999999999999998 89999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..+.+..+.... ..+...       ..+..+.++|.+||+.||.+||++.
T Consensus       209 ~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~i~~~l~~~p~~Rpt~~  252 (261)
T cd05148         209 NNHEVYDQITAGY-RMPCPA-------KCPQEIYKIMLECWAAEPEDRPSFK  252 (261)
T ss_pred             CHHHHHHHHHhCC-cCCCCC-------CCCHHHHHHHHHHcCCCchhCcCHH
Confidence            8777777666432 111111       1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-40  Score=320.08  Aligned_cols=259  Identities=27%  Similarity=0.418  Sum_probs=201.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH--HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA--LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      .+|++.+.||+|+||.||+|++..     +++.||+|++....  .........+.+|+.++++++||||+++++++.+.
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   76 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDAD-----TGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDP   76 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcC-----CCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcC
Confidence            479999999999999999999876     67889999875321  11234456778899999999999999999998753


Q ss_pred             --ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          162 --HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       162 --~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                        ..+++||||+++++|.+++....  .+....                            .+.++.||+.||.|||++|
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~----------------------------~~~~~~~i~~al~~LH~~~  126 (264)
T cd06653          77 EEKKLSIFVEYMPGGSIKDQLKAYG--ALTENV----------------------------TRRYTRQILQGVSYLHSNM  126 (264)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence              56899999999999998886532  222222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.++|+|||+++.......                                             
T Consensus       127 i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------  161 (264)
T cd06653         127 IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM---------------------------------------------  161 (264)
T ss_pred             EecCCCCHHHEEEcCCCCEEECccccccccccccc---------------------------------------------
Confidence            99999999999999999999999999843221000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    .........|+..|+|||.+.+..++.++|||||||++|+|++|+.||..
T Consensus       162 ------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  211 (264)
T cd06653         162 ------------------------------SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAE  211 (264)
T ss_pred             ------------------------------cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCc
Confidence                                          00011234688999999999988899999999999999999999999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ........++...... +.....      ....+.++|.+||+ +|..||++.    +++.|||.
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~p~~------~~~~~~~~i~~~l~-~~~~r~~~~----~~~~~~~~  264 (264)
T cd06653         212 YEAMAAIFKIATQPTK-PMLPDG------VSDACRDFLKQIFV-EEKRRPTAE----FLLRHPFV  264 (264)
T ss_pred             cCHHHHHHHHHcCCCC-CCCCcc------cCHHHHHHHHHHhc-CcccCccHH----HHhcCCCC
Confidence            7766665555433221 111111      11248999999999 579999998    99999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1e-40  Score=341.69  Aligned_cols=293  Identities=18%  Similarity=0.216  Sum_probs=206.1

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~  157 (517)
                      +.+..++|.+.+.||+|+||.||+|+++.......++.||+|+++.....  .....+..|+.+|.++. |||||+++++
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~--~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARS--SEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCCh--hHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            44556789999999999999999999865322235678999999754222  22345778999999997 9999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCc------cc-----------------------------------hhhh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGI------SS-----------------------------------AKFV  196 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~------~~-----------------------------------~~~~  196 (517)
                      +...+..|+|||||++|+|.+++..........      ..                                   ....
T Consensus       110 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADY  189 (401)
T ss_pred             EccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCc
Confidence            999999999999999999999997643210000      00                                   0000


Q ss_pred             h---------h---------h-hhhhh-h-------cCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          197 F---------F---------L-LFFFF-Y-------NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       197 ~---------~---------~-l~~~~-~-------~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      .         .         . .+... .       ...............+..|+.||+.||+|||+++|+||||||+|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~N  269 (401)
T cd05107         190 VPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARN  269 (401)
T ss_pred             cchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcce
Confidence            0         0         0 00000 0       00000011122344567789999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.+.....                                                       
T Consensus       270 iLl~~~~~~kL~DfGla~~~~~~~~-------------------------------------------------------  294 (401)
T cd05107         270 VLICEGKLVKICDFGLARDIMRDSN-------------------------------------------------------  294 (401)
T ss_pred             EEEeCCCEEEEEecCcceecccccc-------------------------------------------------------
Confidence            9999999999999999843211000                                                       


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........|++.|+|||.+.+..++.++|||||||++|||++ |..||......+....
T Consensus       295 ---------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~  353 (401)
T cd05107         295 ---------------------YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYN  353 (401)
T ss_pred             ---------------------cccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHH
Confidence                                 000112357889999999998889999999999999999998 8999987666555444


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+......+.. ..      ...++.+||.+||..+|.+||++.    +|++
T Consensus       354 ~~~~~~~~~~p-~~------~~~~l~~li~~cl~~~P~~RPs~~----ell~  394 (401)
T cd05107         354 AIKRGYRMAKP-AH------ASDEIYEIMQKCWEEKFEIRPDFS----QLVH  394 (401)
T ss_pred             HHHcCCCCCCC-CC------CCHHHHHHHHHHcCCChhHCcCHH----HHHH
Confidence            44333222111 11      123589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.8e-40  Score=324.07  Aligned_cols=268  Identities=20%  Similarity=0.264  Sum_probs=205.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|+.+........+.+++|.+.....  ......+.+|+.++++++||||+++++++.+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD--ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc--hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            468999999999999999999987654444567899999865422  123456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++.......-.                     .............++.||+.||+|||++||+|
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H  140 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLRATKSKDEK---------------------LKPPPLSTKQKVALCTQIALGMDHLSNARFVH  140 (275)
T ss_pred             cceEEEEecCCCcHHHHHHhccccccc---------------------ccccCCCHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            999999999999999998765321100                     00001111223467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||+++......                                                 
T Consensus       141 ~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------  171 (275)
T cd05046         141 RDLAARNCLVSSQREVKVSLLSLSKDVYNSE-------------------------------------------------  171 (275)
T ss_pred             CcCccceEEEeCCCcEEEcccccccccCccc-------------------------------------------------
Confidence            9999999999999999999999873211000                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..
T Consensus       172 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~  223 (275)
T cd05046         172 ----------------------------YYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS  223 (275)
T ss_pred             ----------------------------ccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc
Confidence                                        001112246778999999988888999999999999999998 889998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .......+......++... .      .+..+.++|.+||..||.+||++.    |++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~i~~~l~~~p~~Rp~~~----~~l~~  272 (275)
T cd05046         224 DEEVLNRLQAGKLELPVPE-G------CPSRLYKLMTRCWAVNPKDRPSFS----ELVSA  272 (275)
T ss_pred             hHHHHHHHHcCCcCCCCCC-C------CCHHHHHHHHHHcCCCcccCCCHH----HHHHH
Confidence            7777776665554433221 1      122589999999999999999997    77653

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=8e-41  Score=333.22  Aligned_cols=270  Identities=20%  Similarity=0.289  Sum_probs=194.4

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEE
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      +++.+|.|  |.||.++...     +++.||||++...... ......+..|+.+++.++||||++++++|...+..|++
T Consensus         6 i~~~~~~~--~~v~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   77 (314)
T cd08216           6 IGKCFEDL--MIVHLAKHKP-----TNTLVAVKKINLDSCS-KEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVV   77 (314)
T ss_pred             hhHhhcCC--ceEEEEEecC-----CCCEEEEEEEeccccc-hhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEE
Confidence            34444444  4555555554     5688999998765222 23456788899999999999999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||+++|+|.+++.......++...                            ++.++.||+.||+|||++||+||||||
T Consensus        78 ~e~~~~~~l~~~l~~~~~~~~~~~~----------------------------~~~~~~~l~~~L~~LH~~~ivH~dlk~  129 (314)
T cd08216          78 SPLMAYGSCEDLLKTHFPEGLPELA----------------------------IAFILKDVLNALDYIHSKGFIHRSVKA  129 (314)
T ss_pred             EeccCCCCHHHHHHHhcccCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecCCCCc
Confidence            9999999999998765333333222                            236789999999999999999999999


Q ss_pred             CceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccc
Q 010140          248 ENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIR  327 (517)
Q Consensus       248 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      +|||++.+|.+||+|||.+..........                                                   
T Consensus       130 ~Nili~~~~~~kl~d~~~~~~~~~~~~~~---------------------------------------------------  158 (314)
T cd08216         130 SHILLSGDGKVVLSGLRYSVSMIKHGKRQ---------------------------------------------------  158 (314)
T ss_pred             ceEEEecCCceEEecCccceeeccccccc---------------------------------------------------
Confidence            99999999999999999874332100000                                                   


Q ss_pred             cccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCCCCCCCChHHH
Q 010140          328 EQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT  405 (517)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~  405 (517)
                                          ...........++..|+|||++.+.  .++.++||||+||++|||++|..||........
T Consensus       159 --------------------~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~  218 (314)
T cd08216         159 --------------------RVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQM  218 (314)
T ss_pred             --------------------cccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                                0000111234578899999999764  488999999999999999999999987665443


Q ss_pred             HHHHhcCCCC-------CCCCC------------------CCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          406 LINILKKPLT-------FPRIG------------------VSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       406 ~~~i~~~~~~-------~p~~~------------------~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ......+...       .+...                  ...........++.+||.+||+.||++||++.    ++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~----~ll~  294 (314)
T cd08216         219 LLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSAS----QLLN  294 (314)
T ss_pred             HHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHH----HHhc
Confidence            3322221110       00000                  00000111234688999999999999999998    9999


Q ss_pred             CCCcCCCC
Q 010140          461 HEFFKGIN  468 (517)
Q Consensus       461 hp~f~~~~  468 (517)
                      ||||+.+.
T Consensus       295 ~p~~~~~~  302 (314)
T cd08216         295 HSFFKQCK  302 (314)
T ss_pred             CchHhhhc
Confidence            99998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.6e-41  Score=322.69  Aligned_cols=250  Identities=24%  Similarity=0.323  Sum_probs=194.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++.+.||+|+||.||+|+++.      +..+|+|++.+....    ...+..|+.+++.++||||+++++++...+
T Consensus         3 ~~~~~~~~~lg~G~~~~v~~~~~~~------~~~~~iK~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05059           3 PSELTFLKELGSGQFGVVHLGKWRG------KIDVAIKMIREGAMS----EDDFIEEAKVMMKLSHPNLVQLYGVCTKQR   72 (256)
T ss_pred             hHHcchhhhhccCCCceEEEeEecC------CccEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEEEEEEEEcCCC
Confidence            3568999999999999999998753      457999998654321    234556999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++|++|.+++..... .+....                            +..++.||+.||+|||++||+|
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~i~H  123 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERKG-KLGTEW----------------------------LLDMCSDVCEAMEYLESNGFIH  123 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhccc-CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            99999999999999998875432 222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.+||+|||+++......                                                 
T Consensus       124 ~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~-------------------------------------------------  154 (256)
T cd05059         124 RDLAARNCLVGEDNVVKVSDFGLARYVLDDQ-------------------------------------------------  154 (256)
T ss_pred             ccccHhhEEECCCCcEEECCcccceeccccc-------------------------------------------------
Confidence            9999999999999999999999874321000                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...+
T Consensus       155 ----------------------------~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  206 (256)
T cd05059         155 ----------------------------YTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS  206 (256)
T ss_pred             ----------------------------ccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC
Confidence                                        000011124567999999998889999999999999999998 899998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+....+..... .+... .      .+.++.+|+.+||..+|++||++.    |+++
T Consensus       207 ~~~~~~~~~~~~~-~~~~~-~------~~~~~~~li~~cl~~~p~~Rpt~~----~~l~  253 (256)
T cd05059         207 NSEVVESVSAGYR-LYRPK-L------APTEVYTIMYSCWHEKPEDRPAFK----KLLS  253 (256)
T ss_pred             HHHHHHHHHcCCc-CCCCC-C------CCHHHHHHHHHHhcCChhhCcCHH----HHHH
Confidence            7776666654321 11111 1      122589999999999999999997    7765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.5e-40  Score=322.03  Aligned_cols=249  Identities=22%  Similarity=0.335  Sum_probs=195.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++..++|+++++||+|+||.||+|..+.      ++.||+|.+.....    ....+.+|+.+++.++||||+++++++.
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~------~~~~a~K~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~   71 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYNG------HTKVAIKSLKQGSM----SPEAFLAEANLMKQLQHPRLVRLYAVVT   71 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecCC------CceEEEEEecCCCC----cHHHHHHHHHHHHhcCCcCeeeEEEEEc
Confidence            3556789999999999999999998653      46799999875432    2345667999999999999999999875


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       .+..|+||||+++++|.+++.......+.....                            ..++.|++.||+|||+.|
T Consensus        72 -~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~i~~~i~~al~~LH~~~  122 (260)
T cd05067          72 -QEPIYIITEYMENGSLVDFLKTPEGIKLTINKL----------------------------IDMAAQIAEGMAFIERKN  122 (260)
T ss_pred             -cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHhcCC
Confidence             457899999999999999887654333333222                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ++||||||+||+++.++.++|+|||++.......                                              
T Consensus       123 i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~----------------------------------------------  156 (260)
T cd05067         123 YIHRDLRAANILVSETLCCKIADFGLARLIEDNE----------------------------------------------  156 (260)
T ss_pred             eecccccHHhEEEcCCCCEEEccCcceeecCCCC----------------------------------------------
Confidence            9999999999999999999999999974322100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||++.+..++.++|||||||++|||++ |++||.
T Consensus       157 -------------------------------~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  205 (260)
T cd05067         157 -------------------------------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYP  205 (260)
T ss_pred             -------------------------------cccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCC
Confidence                                           000112245678999999998889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.+..+....+.... ..+... .      .+.++.++|.+||+.+|++||++.
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~-~------~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05067         206 GMTNPEVIQNLERGY-RMPRPD-N------CPEELYELMRLCWKEKPEERPTFE  251 (260)
T ss_pred             CCChHHHHHHHHcCC-CCCCCC-C------CCHHHHHHHHHHccCChhhCCCHH
Confidence            887766666554432 112111 1      122589999999999999999996

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=3.2e-40  Score=328.96  Aligned_cols=273  Identities=19%  Similarity=0.218  Sum_probs=202.2

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYA  156 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~  156 (517)
                      .+..++|.+.+.||+|+||.||+|+..+...  ......+|+|.+.....  ......+..|+.+++.+ +||||+++++
T Consensus         8 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (314)
T cd05099           8 EFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT--DKDLADLISEMELMKLIGKHKNIINLLG   85 (314)
T ss_pred             cccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC--hHHHHHHHHHHHHHHhccCCCCeeeEEE
Confidence            4556789999999999999999998753211  12456799999875321  23345677799999999 6999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++..++..|+||||+++|+|.+++...........  .            ..............+..++.||+.||.|||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~--~------------~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  151 (314)
T cd05099          86 VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYT--F------------DITKVPEEQLSFKDLVSCAYQVARGMEYLE  151 (314)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCCccccc--c------------cccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999976432111000  0            000111222334445678999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++.......                                          
T Consensus       152 ~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~------------------------------------------  189 (314)
T cd05099         152 SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDY------------------------------------------  189 (314)
T ss_pred             HCCeeeccccceeEEEcCCCcEEEcccccccccccccc------------------------------------------
Confidence            99999999999999999999999999999854321000                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        ........++..|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       190 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~  235 (314)
T cd05099         190 ----------------------------------YKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGS  235 (314)
T ss_pred             ----------------------------------ccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCC
Confidence                                              000011124567999999998889999999999999999999 899


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||.+....+.+..+......  .....      ...++.+||.+||..||++||++.
T Consensus       236 p~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~l~~li~~cl~~~p~~Rps~~  284 (314)
T cd05099         236 PYPGIPVEELFKLLREGHRM--DKPSN------CTHELYMLMRECWHAVPTQRPTFK  284 (314)
T ss_pred             CCCCCCHHHHHHHHHcCCCC--CCCCC------CCHHHHHHHHHHcCCCcccCcCHH
Confidence            99888777777666554321  11111      122589999999999999999987

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=2e-40  Score=324.79  Aligned_cols=258  Identities=25%  Similarity=0.388  Sum_probs=192.8

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecC--c
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEAS--H  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~--~  162 (517)
                      |++.+.||+|+||.||+|+++.     +++.||+|++....... . ......|+.++.++. ||||+++++++.++  +
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~-----~~~~~aik~~~~~~~~~-~-~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   73 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRK-----TGKYYAIKCMKKHFKSL-E-QVNNLREIQALRRLSPHPNILRLIEVLFDRKTG   73 (282)
T ss_pred             CceEeeccccccceEEEEEEcC-----CCcEEEEEEehhccCCc-h-hhhHHHHHHHHhhcCCCCCccceEEEEecCCCC
Confidence            6789999999999999999876     67889999986542111 1 122345888888885 99999999999887  8


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++ |+|.+.+.... ..+...                            .++.++.||+.||+|||++||+|
T Consensus        74 ~~~lv~e~~~-~~l~~~l~~~~-~~~~~~----------------------------~~~~~~~qi~~~L~~LH~~~i~H  123 (282)
T cd07831          74 RLALVFELMD-MNLYELIKGRK-RPLPEK----------------------------RVKSYMYQLLKSLDHMHRNGIFH  123 (282)
T ss_pred             cEEEEEecCC-ccHHHHHHhcc-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCcee
Confidence            9999999996 58877776532 122222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++. +.+||+|||+++.....                                                  
T Consensus       124 ~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~--------------------------------------------------  152 (282)
T cd07831         124 RDIKPENILIKD-DILKLADFGSCRGIYSK--------------------------------------------------  152 (282)
T ss_pred             cccCHHHEEEcC-CCeEEEecccccccccC--------------------------------------------------
Confidence            999999999999 99999999998432110                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......+++.|+|||.+.+ ..++.++|||||||++|||++|.+||.+.+
T Consensus       153 -----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~  203 (282)
T cd07831         153 -----------------------------PPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTN  203 (282)
T ss_pred             -----------------------------CCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCC
Confidence                                         00112357889999998754 446889999999999999999999999877


Q ss_pred             hHHHHHHHhcCC------------------CCCCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKP------------------LTFPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~------------------~~~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+....+....                  ..++.........  ...+..+.+||.+||+.||++||++.    ++++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~----~~l~~  279 (282)
T cd07831         204 ELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAK----QALRH  279 (282)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHH----HHhhC
Confidence            665544443211                  0111110000000  01234689999999999999999998    99999


Q ss_pred             CCc
Q 010140          462 EFF  464 (517)
Q Consensus       462 p~f  464 (517)
                      |||
T Consensus       280 ~~~  282 (282)
T cd07831         280 PYF  282 (282)
T ss_pred             CCC
Confidence            998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.4e-40  Score=326.98  Aligned_cols=263  Identities=28%  Similarity=0.426  Sum_probs=209.9

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..+.|++.+.||+|+||.||+|.+..     .+..||+|++.....    ....+..|+.+++.++|+||+++++.+...
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   87 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRA-----TGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVG   87 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEcc-----CCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEEC
Confidence            45679999999999999999999876     567899999975532    345566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+|+||++|++|.+++.... ..+....                            ...++.||+.||.|||++||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~----------------------------~~~i~~~i~~~L~~lH~~gi~  138 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF-VRMNEPQ----------------------------IAYVCREVLQGLEYLHSQNVI  138 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCee
Confidence            99999999999999999988753 1222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |+||||+||+++.++.++|+|||++.......                                                
T Consensus       139 H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~------------------------------------------------  170 (286)
T cd06614         139 HRDIKSDNILLSKDGSVKLADFGFAAQLTKEK------------------------------------------------  170 (286)
T ss_pred             eCCCChhhEEEcCCCCEEECccchhhhhccch------------------------------------------------
Confidence            99999999999999999999999873221100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                    .......|++.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       171 ------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~  220 (286)
T cd06614         171 ------------------------------SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREP  220 (286)
T ss_pred             ------------------------------hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC
Confidence                                          00122357889999999998889999999999999999999999999877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      .......+........... .     .....+.+||.+||+.+|.+||++.    +++.||||+...|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~-~-----~~~~~l~~li~~~l~~~p~~Rpt~~----~il~~~~~~~~~~~  279 (286)
T cd06614         221 PLRALFLITTKGIPPLKNP-E-----KWSPEFKDFLNKCLVKDPEKRPSAE----ELLQHPFLKKACPK  279 (286)
T ss_pred             HHHHHHHHHhcCCCCCcch-h-----hCCHHHHHHHHHHhccChhhCcCHH----HHhhChHhhccCch
Confidence            7665555544322111111 0     0123589999999999999999998    99999999986553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-40  Score=318.52  Aligned_cols=250  Identities=48%  Similarity=0.841  Sum_probs=205.2

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||.|+||.||+|.+..     .++.||+|++.+...........+..|+.+++.++||||+++++.++.+...|+||||+
T Consensus         1 lg~G~~~~v~~~~~~~-----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKD-----TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECC-----CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecC
Confidence            6999999999999876     56889999998775544445667788999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      ++++|.+++....  .++....                            ..++.||+.||.|||+++++|+||||+||+
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~~----------------------------~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~  125 (250)
T cd05123          76 PGGELFSHLSKEG--RFSEERA----------------------------RFYAAEIVLALEYLHSLGIIYRDLKPENIL  125 (250)
T ss_pred             CCCcHHHHHHhcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCceecCCCcceEE
Confidence            9999999887642  2222222                            367899999999999999999999999999


Q ss_pred             EccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccC
Q 010140          252 VREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD  331 (517)
Q Consensus       252 l~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (517)
                      ++.++.++|+|||++.......                                                          
T Consensus       126 ~~~~~~~~l~d~~~~~~~~~~~----------------------------------------------------------  147 (250)
T cd05123         126 LDADGHIKLTDFGLAKELSSEG----------------------------------------------------------  147 (250)
T ss_pred             EcCCCcEEEeecCcceecccCC----------------------------------------------------------
Confidence            9999999999999874322100                                                          


Q ss_pred             CCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhc
Q 010140          332 GDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK  411 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~  411 (517)
                                          .......|+..|+|||.+.+...+.++|+||||+++|+|++|..||...+.......+..
T Consensus       148 --------------------~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~  207 (250)
T cd05123         148 --------------------SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILK  207 (250)
T ss_pred             --------------------CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhc
Confidence                                012234588899999999988889999999999999999999999988877777777766


Q ss_pred             CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       412 ~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....++...         ...+.++|.+||..||++||++.. ++++++||||
T Consensus       208 ~~~~~~~~~---------~~~l~~~i~~~l~~~p~~R~~~~~-~~~l~~~~~f  250 (250)
T cd05123         208 DPLRFPEFL---------SPEARDLISGLLQKDPTKRLGSGG-AEEIKAHPFF  250 (250)
T ss_pred             CCCCCCCCC---------CHHHHHHHHHHhcCCHhhCCCccc-HHHHHhCCCC
Confidence            544444332         124899999999999999999933 4499999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.2e-41  Score=336.93  Aligned_cols=263  Identities=29%  Similarity=0.401  Sum_probs=201.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|.+..     ++..||||++..... .......+..|+.+|+.++||||+++++++....
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   87 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRR-----TGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMKHENVIGLLDVFTPDL   87 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECC-----CCcEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCccceeeeecCCc
Confidence            4689999999999999999999876     678899999864321 1223345667999999999999999999997654


Q ss_pred             ------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 ------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                            ..|+||||+ |++|..++...   .+++..                            ++.++.||+.||+|||
T Consensus        88 ~~~~~~~~~lv~e~~-~~~l~~~~~~~---~l~~~~----------------------------~~~i~~qi~~al~~LH  135 (343)
T cd07880          88 SLDRFHDFYLVMPFM-GTDLGKLMKHE---KLSEDR----------------------------IQFLVYQMLKGLKYIH  135 (343)
T ss_pred             cccccceEEEEEecC-CCCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                  459999999 88998877542   233222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+||+++.++.++|+|||++.....                                             
T Consensus       136 ~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~---------------------------------------------  170 (343)
T cd07880         136 AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS---------------------------------------------  170 (343)
T ss_pred             hCCeecCCCCHHHEEEcCCCCEEEeeccccccccc---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          ......+++.|+|||++.+. .++.++|||||||++|+|++|..
T Consensus       171 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~  214 (343)
T cd07880         171 ------------------------------------EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKP  214 (343)
T ss_pred             ------------------------------------CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence                                                01123578899999999763 47899999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCC--------------------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFP--------------------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p--------------------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+....+..+.......+                    .........  ......+.++|.+||+.||++|||+. 
T Consensus       215 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~-  293 (343)
T cd07880         215 LFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAA-  293 (343)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHH-
Confidence            9998776655555443221111                    000000000  01233588999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCC
Q 010140          454 GSVEIKRHEFFKGIN  468 (517)
Q Consensus       454 ~~~ell~hp~f~~~~  468 (517)
                         +++.||||+...
T Consensus       294 ---~~l~~~~~~~~~  305 (343)
T cd07880         294 ---EALAHPYFEEFH  305 (343)
T ss_pred             ---HHhcCccHhhhc
Confidence               999999999753

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=6.5e-41  Score=336.89  Aligned_cols=270  Identities=24%  Similarity=0.320  Sum_probs=201.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee----
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE----  159 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~----  159 (517)
                      ++|++.+.||+|+||.||+|.++.     +++.||+|++...... ......+.+|+.+|++++||||++++++|.    
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~-----~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   78 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTR-----SGKKVAIKKIPHAFDV-PTLAKRTLRELKILRHFKHDNIIAIRDILRPPGA   78 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcC-----CCCEEEEEEecccccc-ccchHHHHHHHHHHHhcCCCCccCHHHhccccCC
Confidence            689999999999999999999887     6789999998754221 223455667999999999999999999885    


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .....|+||||+ +|+|.+++...  ..++...                            ++.++.||+.||.|||++|
T Consensus        79 ~~~~~~lv~e~~-~~~l~~~~~~~--~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~~  127 (334)
T cd07855          79 DFKDVYVVMDLM-ESDLHHIIHSD--QPLTEEH----------------------------IRYFLYQLLRGLKYIHSAN  127 (334)
T ss_pred             CCceEEEEEehh-hhhHHHHhccC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCC
Confidence            345789999999 56898877543  2233222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++........                                            
T Consensus       128 ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------------  163 (334)
T cd07855         128 VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTE--------------------------------------------  163 (334)
T ss_pred             eecCCCCHHHEEEcCCCcEEecccccceeecccCcC--------------------------------------------
Confidence            999999999999999999999999998433210000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                    .........|+..|+|||++.+ ..++.++|||||||++|+|++|+.||.
T Consensus       164 ------------------------------~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~  213 (334)
T cd07855         164 ------------------------------HKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFP  213 (334)
T ss_pred             ------------------------------CCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccC
Confidence                                          0011123468999999999876 458999999999999999999999998


Q ss_pred             CCChHHHHHHHhcCCCC--------------------CCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          399 GENNEKTLINILKKPLT--------------------FPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~--------------------~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      +.+....+..+......                    ++.........  .....++.++|.+||+.||.+||++.    
T Consensus       214 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~----  289 (334)
T cd07855         214 GKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVE----  289 (334)
T ss_pred             CCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHH----
Confidence            87655444333221100                    00000000000  01234689999999999999999998    


Q ss_pred             HhhcCCCcCCCC
Q 010140          457 EIKRHEFFKGIN  468 (517)
Q Consensus       457 ell~hp~f~~~~  468 (517)
                      +++.||||++..
T Consensus       290 ~~l~~~~~~~~~  301 (334)
T cd07855         290 QALQHPFLAQYH  301 (334)
T ss_pred             HHHhChhhhhcc
Confidence            999999998643

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.6e-40  Score=321.79  Aligned_cols=249  Identities=22%  Similarity=0.336  Sum_probs=194.1

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++.++||+|+||.||+|....      +..+|+|.+......    ...+.+|+.++++++||||+++++++.
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~------~~~~~~k~~~~~~~~----~~~~~~E~~~l~~l~~~~i~~~~~~~~   71 (260)
T cd05070           2 EIPRESLQLIKKLGNGQFGEVWMGTWNG------NTKVAVKTLKPGTMS----PESFLEEAQIMKKLRHDKLVQLYAVVS   71 (260)
T ss_pred             CCchHHhhhhheeccccCceEEEEEecC------CceeEEEEecCCCCC----HHHHHHHHHHHHhcCCCceEEEEeEEC
Confidence            3456789999999999999999998763      356899998754321    234677999999999999999999885


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ....|+||||+++++|.+++.......+++..                            .+.++.|++.||+|||++|
T Consensus        72 -~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~al~~lH~~~  122 (260)
T cd05070          72 -EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPN----------------------------LVDMAAQVAAGMAYIERMN  122 (260)
T ss_pred             -CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHHCC
Confidence             45689999999999999998764333333322                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.++|+|||++.......                                              
T Consensus       123 i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~----------------------------------------------  156 (260)
T cd05070         123 YIHRDLRSANILVGDGLVCKIADFGLARLIEDNE----------------------------------------------  156 (260)
T ss_pred             cccCCCccceEEEeCCceEEeCCceeeeeccCcc----------------------------------------------
Confidence            9999999999999999999999999984322100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|+|++ |.+||.
T Consensus       157 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~  205 (260)
T cd05070         157 -------------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYP  205 (260)
T ss_pred             -------------------------------cccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCC
Confidence                                           000111235668999999988889999999999999999999 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.+..+....+.... ..+...       ..+..+.+||.+||..||.+|||+.
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~li~~~l~~~p~~Rpt~~  251 (260)
T cd05070         206 GMNNREVLEQVERGY-RMPCPQ-------DCPISLHELMLQCWKKDPEERPTFE  251 (260)
T ss_pred             CCCHHHHHHHHHcCC-CCCCCC-------cCCHHHHHHHHHHcccCcccCcCHH
Confidence            887777776665432 111111       1123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=3.8e-40  Score=320.07  Aligned_cols=253  Identities=27%  Similarity=0.357  Sum_probs=196.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|....     +++.||+|.++...........++.+|+.++++++|+||+++++++...+.
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~   76 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLL-----DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNE   76 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcC-----CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe
Confidence            689999999999999999999885     678899998875433333445677789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .++||||+++|+|..++............                          ..+..++.||+.||.|||++||+||
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~--------------------------~~~~~~~~~l~~~l~~lh~~~i~h~  130 (267)
T cd08224          77 LNIVLELADAGDLSRMIKHFKKQKRLIPE--------------------------RTIWKYFVQLCSALEHMHSKRIMHR  130 (267)
T ss_pred             EEEEEecCCCCCHHHHHHHhcccCCCcCH--------------------------HHHHHHHHHHHHHHHHHHhCCEecC
Confidence            99999999999999988654222111111                          1224678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.++|+|||+++......                                                  
T Consensus       131 dl~p~nil~~~~~~~~l~d~~~~~~~~~~~--------------------------------------------------  160 (267)
T cd08224         131 DIKPANVFITATGVVKLGDLGLGRFFSSKT--------------------------------------------------  160 (267)
T ss_pred             CcChhhEEECCCCcEEEeccceeeeccCCC--------------------------------------------------
Confidence            999999999999999999999874321100                                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh-
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~-  402 (517)
                                                  .......|++.|+|||.+.+..++.++|||||||++|+|++|..||..... 
T Consensus       161 ----------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  212 (267)
T cd08224         161 ----------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  212 (267)
T ss_pred             ----------------------------cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCcc
Confidence                                        001223588899999999988899999999999999999999999975532 


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          403 -EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       403 -~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                       .+....+..+..  +.....     .....+.++|.+||..+|++||++.
T Consensus       213 ~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~i~~cl~~~p~~Rp~~~  256 (267)
T cd08224         213 LYSLCKKIEKCDY--PPLPAD-----HYSEELRDLVSRCINPDPEKRPDIS  256 (267)
T ss_pred             HHHHHhhhhcCCC--CCCChh-----hcCHHHHHHHHHHcCCCcccCCCHH
Confidence             233333333221  111110     1223589999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.7e-40  Score=325.33  Aligned_cols=276  Identities=21%  Similarity=0.244  Sum_probs=202.1

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++.....+.++..||+|++.....  ......+.+|+.++++++||||+++++++..+
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC--HHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            4578999999999999999999976432233568899999875432  12335577799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccc-cccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV-HTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...|+||||+++|+|.+++...............         ....... .........+..++.||+.||+|||++|+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i  151 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHST---------SSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKF  151 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccc---------cccccccccccccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999998764321110000000         0000000 00111223345789999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.++|+|||++........                                              
T Consensus       152 ~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------  185 (288)
T cd05050         152 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADY----------------------------------------------  185 (288)
T ss_pred             ecccccHhheEecCCCceEECccccceecccCcc----------------------------------------------
Confidence            9999999999999999999999998743221000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+
T Consensus       186 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~  235 (288)
T cd05050         186 ------------------------------YKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYG  235 (288)
T ss_pred             ------------------------------ccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          000111234567999999998889999999999999999997 8899988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ....+....+....... ... .      .+.++.+||.+||+.||.+||++.
T Consensus       236 ~~~~~~~~~~~~~~~~~-~~~-~------~~~~l~~li~~~l~~~p~~Rpt~~  280 (288)
T cd05050         236 MAHEEVIYYVRDGNVLS-CPD-N------CPLELYNLMRLCWSKLPSDRPSFA  280 (288)
T ss_pred             CCHHHHHHHHhcCCCCC-CCC-C------CCHHHHHHHHHHcccCcccCCCHH
Confidence            88777777666544321 111 1      122589999999999999999997

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-40  Score=319.92  Aligned_cols=136  Identities=27%  Similarity=0.393  Sum_probs=116.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-----C---CCcc
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-----H---PFLP  152 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----H---pnIv  152 (517)
                      +..++|.++++||.|.|++||+|.+..     ..+.||+|+++...    ...+....|+.+|++++     |   .+||
T Consensus        75 F~~gRY~v~rKLGWGHFSTVWLawDtq-----~~r~VAlKVvKSAq----hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV  145 (590)
T KOG1290|consen   75 FNGGRYHVQRKLGWGHFSTVWLAWDTQ-----NKRYVALKVVKSAQ----HYTEAALDEIKLLQQVREGDPNDPGKKCVV  145 (590)
T ss_pred             ccCceEEEEEeccccccceeEEEeecc-----CCeEEEEEEEehhh----HHHHHHHHHHHHHHHHHhcCCCCCCCceee
Confidence            445899999999999999999999987     78999999998653    33445556999999982     3   3599


Q ss_pred             ceeeeee----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHH
Q 010140          153 TLYAEFE----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET  228 (517)
Q Consensus       153 ~l~~~~~----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi  228 (517)
                      +|++.|.    ++.++|||+|++ |.+|..+|.....+.+++..++                            .|++||
T Consensus       146 ~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK----------------------------~I~~qv  196 (590)
T KOG1290|consen  146 QLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVK----------------------------EICRQV  196 (590)
T ss_pred             eeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHH----------------------------HHHHHH
Confidence            9999996    567999999999 9999999999887888776655                            788999


Q ss_pred             HHHHHHHHhc-CceeccCCCCceEEcc
Q 010140          229 LLALEYLHMM-GIVYRDLKPENVLVRE  254 (517)
Q Consensus       229 ~~aL~yLH~~-~iiHrDLKp~NILl~~  254 (517)
                      +.||.|||.. ||||.||||+|||+..
T Consensus       197 L~GLdYLH~ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  197 LTGLDYLHRECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             HHHHHHHHHhcCccccCCCcceeeeec
Confidence            9999999975 9999999999999954

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2.8e-40  Score=319.39  Aligned_cols=243  Identities=23%  Similarity=0.314  Sum_probs=191.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee-e
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF-E  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~  159 (517)
                      +..++|++.+.||+|+||.||++...       +..||+|.+....     ....+.+|+.++++++|+||+++++++ .
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~-------~~~~~~k~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   70 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDYR-------GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVE   70 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEEc-------CCcEEEEEeCCCc-----hHHHHHHHHHHHHhCCCCCeeeEEEEEEc
Confidence            45578999999999999999999765       3668999986542     234566799999999999999999975 4


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .++..|+||||+++++|.+++.......+.....                            ..++.||+.||+|||++|
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~~i~~~l~~lH~~~  122 (256)
T cd05082          71 EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL----------------------------LKFSLDVCEAMEYLEANN  122 (256)
T ss_pred             CCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCC
Confidence            5667899999999999999987653322222222                            367889999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++....                                                
T Consensus       123 i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~------------------------------------------------  154 (256)
T cd05082         123 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS------------------------------------------------  154 (256)
T ss_pred             EeccccchheEEEcCCCcEEecCCccceeccc------------------------------------------------
Confidence            99999999999999999999999998742210                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                       ......++..|+|||++.+..++.++|||||||++|+|++ |+.||.
T Consensus       155 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~  201 (256)
T cd05082         155 ---------------------------------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             ---------------------------------cCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence                                             0011234567999999998889999999999999999997 999998


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .....+....+......  ....      ..+..+.++|.+||+.||++||++.
T Consensus       202 ~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~li~~~l~~~p~~Rpt~~  247 (256)
T cd05082         202 RIPLKDVVPRVEKGYKM--DAPD------GCPPVVYDVMKQCWHLDAATRPSFL  247 (256)
T ss_pred             CCCHHHHHHHHhcCCCC--CCCC------CCCHHHHHHHHHHhcCChhhCcCHH
Confidence            87776666665443211  1111      1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.2e-40  Score=335.37  Aligned_cols=265  Identities=23%  Similarity=0.301  Sum_probs=198.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|.+.+.||+|+||+||+|++..     +++.||||.+...... .....++..|+.+++.++||||+++++++...  
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~   78 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSE-----TNEKVAIKKIANAFDN-RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHR   78 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecC-----CCCeEEEEEecccccc-cchhHHHHHHHHHHHhcCCCCccchHHheecccc
Confidence            579999999999999999999876     6789999998653211 22334556799999999999999999988644  


Q ss_pred             ---ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          162 ---HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       162 ---~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                         ...|+||||+ +++|.+++...  ..+.+...                            +.++.||+.||.|||++
T Consensus        79 ~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~----------------------------~~i~~qi~~aL~~LH~~  127 (337)
T cd07858          79 EAFNDVYIVYELM-DTDLHQIIRSS--QTLSDDHC----------------------------QYFLYQLLRGLKYIHSA  127 (337)
T ss_pred             cccCcEEEEEeCC-CCCHHHHHhcC--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhC
Confidence               3589999999 57898887653  23333332                            36789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      +++||||||+|||++.++.+||+|||+++......                                             
T Consensus       128 ~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~---------------------------------------------  162 (337)
T cd07858         128 NVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKG---------------------------------------------  162 (337)
T ss_pred             CEecCCCCHHHEEEcCCCCEEECcCccccccCCCc---------------------------------------------
Confidence            99999999999999999999999999984322100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       .......|+..|+|||.+.+ ..++.++|||||||++|+|++|++||
T Consensus       163 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  209 (337)
T cd07858         163 ---------------------------------DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLF  209 (337)
T ss_pred             ---------------------------------ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCC
Confidence                                             01123357889999999875 45899999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCC--------------------CCCCCCCC--chhHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLT--------------------FPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~--------------------~p~~~~~~--~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .+.+.......+......                    .+......  ........++.+||.+||+.||++||++.   
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~---  286 (337)
T cd07858         210 PGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVE---  286 (337)
T ss_pred             CCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHH---
Confidence            876544333322210000                    00000000  00012334689999999999999999997   


Q ss_pred             HHhhcCCCcCCC
Q 010140          456 VEIKRHEFFKGI  467 (517)
Q Consensus       456 ~ell~hp~f~~~  467 (517)
                       ++++||||+.+
T Consensus       287 -ell~h~~~~~~  297 (337)
T cd07858         287 -EALAHPYLASL  297 (337)
T ss_pred             -HHHcCcchhhh
Confidence             99999999865

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-40  Score=322.71  Aligned_cols=260  Identities=20%  Similarity=0.238  Sum_probs=195.3

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce--
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY--  163 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--  163 (517)
                      |.+.+.||+|+||.||+|.......  ....||+|.+..+... ......+.+|+.+++.++||||+++++++.....  
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~--~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   77 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDG--SQLKVAVKTMKLDIHT-YSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQ   77 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCC--CcceEEEEEeccCcCC-HHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccc
Confidence            5788999999999999998865321  3578999998754222 2334567789999999999999999998765443  


Q ss_pred             ----eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          164 ----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       164 ----~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                          .++||||+++|+|..++..........                        ......+..++.|++.||+|||++|
T Consensus        78 ~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~------------------------~~~~~~~~~~~~~i~~aL~~lH~~~  133 (273)
T cd05035          78 KIPKPMVILPFMKHGDLHSFLLYSRLGGLPE------------------------KLPLQTLLKFMVDIALGMEYLSNRN  133 (273)
T ss_pred             cCcccEEEEeccCCCCHHHHHHHhhccCCcc------------------------cCCHHHHHHHHHHHHHHHHHHHhCC
Confidence                799999999999998885532111000                        0111223467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++.......                                             
T Consensus       134 i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------  168 (273)
T cd05035         134 FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDY---------------------------------------------  168 (273)
T ss_pred             eeccccchheEEECCCCeEEECCccceeecccccc---------------------------------------------
Confidence            99999999999999999999999999853321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|||++ |.+||.
T Consensus       169 -------------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~  217 (273)
T cd05035         169 -------------------------------YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYP  217 (273)
T ss_pred             -------------------------------ccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence                                           000111235678999999988889999999999999999999 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +....+.+..+.......  ....      ...++.++|.+||+.||++||++.    |+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~li~~~l~~~p~~Rp~~~----e~~~  267 (273)
T cd05035         218 GVENHEIYDYLRHGNRLK--QPED------CLDELYDLMYSCWRADPKDRPTFT----KLRE  267 (273)
T ss_pred             CCCHHHHHHHHHcCCCCC--CCcC------CCHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            888777776666543211  1111      223589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4e-40  Score=319.04  Aligned_cols=250  Identities=24%  Similarity=0.316  Sum_probs=198.8

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++.+.||+|+||.||+|...+      .+.||||.+.....    ....+..|+.+++.++||||+++++++.
T Consensus         2 ~~~~~~~~i~~~ig~g~~~~v~~~~~~~------~~~~~vK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~   71 (261)
T cd05034           2 EIPRESLKLERKLGAGQFGEVWMGTWNG------TTKVAVKTLKPGTM----SPEAFLQEAQIMKKLRHDKLVQLYAVCS   71 (261)
T ss_pred             ccchhheeeeeeeccCcceEEEEEEEcC------CceEEEEEecCCcc----CHHHHHHHHHHHhhCCCCCEeeeeeeee
Confidence            3567899999999999999999998764      36689999875432    2245667999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .....|+||||+++++|.+++.......+.....                            +.++.||+.||.|||++|
T Consensus        72 ~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~----------------------------~~~~~~i~~al~~lh~~~  123 (261)
T cd05034          72 EEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQL----------------------------VDMAAQIAEGMAYLESRN  123 (261)
T ss_pred             cCCceEEEEeccCCCCHHHHHhccccCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCC
Confidence            9899999999999999999987654333333322                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+|+||||+||+++.++.+||+|||+++.+....                                              
T Consensus       124 i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~----------------------------------------------  157 (261)
T cd05034         124 YIHRDLAARNILVGENLVCKIADFGLARLIEDDE----------------------------------------------  157 (261)
T ss_pred             cccCCcchheEEEcCCCCEEECccccceeccchh----------------------------------------------
Confidence            9999999999999999999999999984432100                                              


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........++..|+|||.+.+..++.++|||||||++|+|++ |+.||.
T Consensus       158 -------------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  206 (261)
T cd05034         158 -------------------------------YTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYP  206 (261)
T ss_pred             -------------------------------hhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCC
Confidence                                           000011124568999999998889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +......+..+..... .+... .      .+.++.+++.+||..||++||++.
T Consensus       207 ~~~~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~i~~~l~~~p~~Rp~~~  252 (261)
T cd05034         207 GMTNREVLEQVERGYR-MPRPP-N------CPEELYDLMLQCWDKDPEERPTFE  252 (261)
T ss_pred             CCCHHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHcccCcccCCCHH
Confidence            8887777777765421 11111 1      122589999999999999999996

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2e-40  Score=334.67  Aligned_cols=261  Identities=27%  Similarity=0.342  Sum_probs=198.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|.+.+.||+|+||.||+|.+..     +++.||+|++.+.... ......+.+|+.++++++||||+++++++... 
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~   89 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTK-----TGLRVAVKKLSRPFQS-IIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   89 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcC-----CCeEEEEEEecCcchh-hHHHHHHHHHHHHHHHcCCCcccceeeeeeecc
Confidence            3789999999999999999999876     6788999998754322 22345566799999999999999999988643 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ...|++++++ |++|.+++...   .+....                            ++.++.||+.||+|||
T Consensus        90 ~~~~~~~~~lv~~~~-~~~L~~~~~~~---~l~~~~----------------------------~~~i~~qi~~aL~~LH  137 (345)
T cd07877          90 SLEEFNDVYLVTHLM-GADLNNIVKCQ---KLTDDH----------------------------VQFLIYQILRGLKYIH  137 (345)
T ss_pred             cccccccEEEEehhc-ccCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                 3478999988 88998876542   233222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+||+++.++.+||+|||+++....                                             
T Consensus       138 ~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~---------------------------------------------  172 (345)
T cd07877         138 SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD---------------------------------------------  172 (345)
T ss_pred             HCCeeecCCChHHEEEcCCCCEEEecccccccccc---------------------------------------------
Confidence            99999999999999999999999999998732110                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          ......|++.|+|||.+.+ ..++.++|||||||++|+|++|+.
T Consensus       173 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~  216 (345)
T cd07877         173 ------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT  216 (345)
T ss_pred             ------------------------------------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                0122357889999999876 457899999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCC--------------------CCCCch--hHHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRI--------------------GVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~--------------------~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+....+..+.......+..                    ......  ......++.+||.+||+.||.+||++. 
T Consensus       217 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~-  295 (345)
T cd07877         217 LFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA-  295 (345)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHH-
Confidence            998776655544443211100000                    000000  001233588999999999999999997 


Q ss_pred             ChHHhhcCCCcCC
Q 010140          454 GSVEIKRHEFFKG  466 (517)
Q Consensus       454 ~~~ell~hp~f~~  466 (517)
                         +++.||||+.
T Consensus       296 ---e~l~h~~f~~  305 (345)
T cd07877         296 ---QALAHAYFAQ  305 (345)
T ss_pred             ---HHhcChhhhh
Confidence               9999999985

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=3.2e-40  Score=318.16  Aligned_cols=243  Identities=22%  Similarity=0.282  Sum_probs=186.6

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+++.     +++.||+|.+.....  ......+.+|+.+++.++||||+++++++......|+|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~-----~~~~~a~k~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   73 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRA-----DNTPVAVKSCRETLP--PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME   73 (252)
T ss_pred             CccCcccCccEEEEEEec-----CCceEEEEecCccCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEe
Confidence            369999999999999976     578899998764321  2233567779999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++++|.+++.... ..+.+..                            +..++.|++.||+|||++||+||||||+|
T Consensus        74 ~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~~L~~lH~~~i~H~dl~p~n  124 (252)
T cd05084          74 LVQGGDFLTFLRTEG-PRLKVKE----------------------------LIQMVENAAAGMEYLESKHCIHRDLAARN  124 (252)
T ss_pred             eccCCcHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCccccccchhe
Confidence            999999999886532 1222222                            23678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||++........                                                       
T Consensus       125 il~~~~~~~kl~dfg~~~~~~~~~~-------------------------------------------------------  149 (252)
T cd05084         125 CLVTEKNVLKISDFGMSREEEDGVY-------------------------------------------------------  149 (252)
T ss_pred             EEEcCCCcEEECccccCcccccccc-------------------------------------------------------
Confidence            9999999999999999742210000                                                       


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........++..|+|||.+.+..++.++|||||||++|||++ |..||...........
T Consensus       150 ---------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~  208 (252)
T cd05084         150 ---------------------ASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREA  208 (252)
T ss_pred             ---------------------cccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHH
Confidence                                 000001123457999999998889999999999999999997 9999987776665555


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..... .+. ...      .+..+.+|+.+||+.||++||++.
T Consensus       209 ~~~~~~-~~~-~~~------~~~~~~~li~~~l~~~p~~Rps~~  244 (252)
T cd05084         209 IEQGVR-LPC-PEL------CPDAVYRLMERCWEYDPGQRPSFS  244 (252)
T ss_pred             HHcCCC-CCC-ccc------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            544321 111 111      122589999999999999999997

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-40  Score=326.26  Aligned_cols=262  Identities=27%  Similarity=0.377  Sum_probs=198.8

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      |++.+.||.|++|.||+|.++.     ++..||+|++..+... ......+..|+.+++.++||||+++++++.+++..|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~   74 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKL-----TGEIVALKKIRLETED-EGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLY   74 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcC-----CCCEEEEEEeeccccc-ccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEE
Confidence            6788999999999999999876     6788999998754221 122345667999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||+ +++|.+++.......+.....                            ..++.||+.||+|||+++++||||
T Consensus        75 iv~e~~-~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~i~~~L~~lH~~~~~H~dl  125 (283)
T cd07835          75 LVFEFL-DLDLKKYMDSSPLTGLDPPLI----------------------------KSYLYQLLQGIAYCHSHRVLHRDL  125 (283)
T ss_pred             EEEecc-CcCHHHHHhhCCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeeCCCC
Confidence            999999 568998887654322332222                            367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      +|+||+++.++.++|+|||+++......                                                    
T Consensus       126 ~p~nil~~~~~~~~l~df~~~~~~~~~~----------------------------------------------------  153 (283)
T cd07835         126 KPQNLLIDREGALKLADFGLARAFGVPV----------------------------------------------------  153 (283)
T ss_pred             CHHHEEEcCCCcEEEeecccccccCCCc----------------------------------------------------
Confidence            9999999999999999999974321100                                                    


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                .......+++.|+|||++.+. .++.++|||||||++|+|++|.+||.+.+...
T Consensus       154 --------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  207 (283)
T cd07835         154 --------------------------RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEID  207 (283)
T ss_pred             --------------------------cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                      001122468899999988765 47899999999999999999999998877655


Q ss_pred             HHHHHhcCCCC------------------CCCCCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLT------------------FPRIGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~------------------~p~~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .+.++......                  ++........  .......+.++|.+||+.||.+||++.    |++.||||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~----~il~~~~~  283 (283)
T cd07835         208 QLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAK----AALQHPYF  283 (283)
T ss_pred             HHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHH----HHhcCCCC
Confidence            55444332110                  0000000000  001123588999999999999999998    99999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=3.5e-40  Score=325.66  Aligned_cols=271  Identities=21%  Similarity=0.282  Sum_probs=201.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCC-----------CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVG-----------LPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF  150 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~-----------~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn  150 (517)
                      ..++|++++.||+|+||.||+|++......           .....||+|.+......  .....+.+|+.+++.++|||
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~   80 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD--NAREDFLKEVKILSRLSDPN   80 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH--HHHHHHHHHHHHHHhcCCCC
Confidence            456899999999999999999987653211           13467899998755322  34456778999999999999


Q ss_pred             ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       151 Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                      |+++++++..++..++||||+++++|.+++..........                   ...........+..++.|++.
T Consensus        81 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~~  141 (296)
T cd05051          81 IARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGL-------------------ACNSKSLSFSTLLYMATQIAS  141 (296)
T ss_pred             EeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccc-------------------cccCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987643211100                   000011122334578899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ||+|||++||+||||||+||+++.++.++|+|||+++.......                                    
T Consensus       142 al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~------------------------------------  185 (296)
T cd05051         142 GMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDY------------------------------------  185 (296)
T ss_pred             HHHHHHHcCccccccchhceeecCCCceEEccccceeecccCcc------------------------------------
Confidence            99999999999999999999999999999999999743221000                                    


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~el  390 (517)
                                                              ........+++.|+|||.+.+..++.++|||||||++|||
T Consensus       186 ----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  225 (296)
T cd05051         186 ----------------------------------------YRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEI  225 (296)
T ss_pred             ----------------------------------------eeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHH
Confidence                                                    0011233567889999999988899999999999999999


Q ss_pred             hh--CCCCCCCCChHHHHHHHhcC------CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          391 LY--GTTPFKGENNEKTLINILKK------PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       391 lt--G~~Pf~~~~~~~~~~~i~~~------~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ++  |..||...+..+.+..+...      ....+. ..      ..+.++.+||.+||+.||++||++.    |+++
T Consensus       226 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~l~~li~~cl~~~p~~Rpt~~----el~~  292 (296)
T cd05051         226 LTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPR-PP------NCPKDIYELMLECWRRDEEDRPTFR----EIHL  292 (296)
T ss_pred             HhcCCCCCCCCcChHHHHHHHHhccccccccccCCC-cc------CCCHHHHHHHHHHhccChhcCCCHH----HHHH
Confidence            98  78899877766665555432      111111 10      1123589999999999999999997    6643

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=5.3e-40  Score=321.69  Aligned_cols=259  Identities=20%  Similarity=0.248  Sum_probs=195.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||+||+|++...... ....||+|++.....  ......+..|+.++..++||||+++++++..
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~-~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~   80 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGEN-VKIPVAIKVLRENTS--PKANKEILDEAYVMAGVGSPYVCRLLGICLT   80 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCc-cceEEEEEEecCCCC--HHHHHHHHHHHHHHHhcCCCCCceEEEEEcC
Confidence            3457899999999999999999997653221 233589999864322  1234556779999999999999999998875


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ...+++|||+++|+|.+++.... ..++....                            ..++.||+.||+|||++||
T Consensus        81 -~~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~----------------------------~~~~~qi~~~L~~lH~~~i  130 (279)
T cd05109          81 -STVQLVTQLMPYGCLLDYVRENK-DRIGSQDL----------------------------LNWCVQIAKGMSYLEEVRL  130 (279)
T ss_pred             -CCcEEEEEcCCCCCHHHHHhhcc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCe
Confidence             45789999999999999886532 22333222                            3678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.+......                                             
T Consensus       131 iH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~---------------------------------------------  165 (279)
T cd05109         131 VHRDLAARNVLVKSPNHVKITDFGLARLLDIDETE---------------------------------------------  165 (279)
T ss_pred             eccccccceEEEcCCCcEEECCCCceeecccccce---------------------------------------------
Confidence            99999999999999999999999998543211000                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......+++.|+|||.+.+..++.++|||||||++|||++ |..||..
T Consensus       166 -------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  214 (279)
T cd05109         166 -------------------------------YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG  214 (279)
T ss_pred             -------------------------------eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence                                           00011235678999999998889999999999999999998 9999987


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .........+..... .+.. ..      ...++.++|.+||+.||++||++.    +++.
T Consensus       215 ~~~~~~~~~~~~~~~-~~~~-~~------~~~~~~~li~~~l~~dp~~Rp~~~----~l~~  263 (279)
T cd05109         215 IPAREIPDLLEKGER-LPQP-PI------CTIDVYMIMVKCWMIDSECRPRFR----ELVD  263 (279)
T ss_pred             CCHHHHHHHHHCCCc-CCCC-cc------CCHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            766655554444322 1111 11      123589999999999999999997    6663

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=3.7e-40  Score=324.67  Aligned_cols=274  Identities=21%  Similarity=0.228  Sum_probs=198.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+|.............+|+|.+......  ....++.+|+.+++.++||||+++++.+..++..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASS--SELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCH--HHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            47899999999999999998865332223467999988754322  2345677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCcc--chhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGIS--SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      |+||||+.+|+|.+++...........  ......        ...............+..++.|++.||+|||++||+|
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH  150 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNS--------SYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVH  150 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCcccccccccccccc--------ccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeeh
Confidence            999999999999999875421110000  000000        0000000112233445678999999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.......                                                
T Consensus       151 ~dikp~nill~~~~~~kl~dfg~~~~~~~~~~------------------------------------------------  182 (290)
T cd05045         151 RDLAARNVLVAEGRKMKISDFGLSRDVYEEDS------------------------------------------------  182 (290)
T ss_pred             hhhhhheEEEcCCCcEEeccccccccccCccc------------------------------------------------
Confidence            99999999999999999999999843221000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+..
T Consensus       183 ----------------------------~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  234 (290)
T cd05045         183 ----------------------------YVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA  234 (290)
T ss_pred             ----------------------------hhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence                                        000112245678999999988889999999999999999998 999998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .......+... ...+... .      ...++.+||.+||+.||++||++.
T Consensus       235 ~~~~~~~~~~~-~~~~~~~-~------~~~~~~~~i~~cl~~~P~~Rp~~~  277 (290)
T cd05045         235 PERLFNLLKTG-YRMERPE-N------CSEEMYNLMLTCWKQEPDKRPTFA  277 (290)
T ss_pred             HHHHHHHHhCC-CCCCCCC-C------CCHHHHHHHHHHccCCcccCCCHH
Confidence            76665544432 2222111 1      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=5.3e-40  Score=330.30  Aligned_cols=279  Identities=19%  Similarity=0.236  Sum_probs=204.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCC--CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVG--LPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +.+...+|++++.||+|+||.||+|++......  .....||+|++.....  ......+.+|+.+++++ +||||++++
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~   84 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDAT--DKDLSDLVSEMEMMKMIGKHKNIINLL   84 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccC--HHHHHHHHHHHHHHHhhcCCCCeeeee
Confidence            445556899999999999999999987542211  1334789998875321  23345677799999999 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++..++..|+||||+++|+|.+++.............              .............+..++.||+.||+||
T Consensus        85 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~qi~~al~~L  150 (334)
T cd05100          85 GACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFD--------------TCKLPEEQLTFKDLVSCAYQVARGMEYL  150 (334)
T ss_pred             EEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccc--------------cccCccccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987643211100000              0001112222334457889999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++.......                                         
T Consensus       151 H~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------  189 (334)
T cd05100         151 ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDY-----------------------------------------  189 (334)
T ss_pred             HHCCeeccccccceEEEcCCCcEEECCcccceecccccc-----------------------------------------
Confidence            999999999999999999999999999999843321000                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........++..|+|||++.+..++.++|||||||++|||++ |.
T Consensus       190 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~  234 (334)
T cd05100         190 -----------------------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGG  234 (334)
T ss_pred             -----------------------------------cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCC
Confidence                                               000111234567999999999889999999999999999998 89


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+.+..+....+...... +. ...      ...++.+||.+||+.+|++||++.    |++++
T Consensus       235 ~p~~~~~~~~~~~~~~~~~~~-~~-~~~------~~~~l~~li~~cl~~~p~~Rps~~----ell~~  289 (334)
T cd05100         235 SPYPGIPVEELFKLLKEGHRM-DK-PAN------CTHELYMIMRECWHAVPSQRPTFK----QLVED  289 (334)
T ss_pred             CCCCCCCHHHHHHHHHcCCCC-CC-CCC------CCHHHHHHHHHHcccChhhCcCHH----HHHHH
Confidence            999988877776666543221 11 111      122489999999999999999997    66654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-41  Score=337.62  Aligned_cols=244  Identities=32%  Similarity=0.478  Sum_probs=199.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      ..+.|.+...+|.|+||.|-.|.+..     +.+.+++|++.+..       .....|+.++... +||||+++.+++.+
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~-----t~~~~~vkii~~~~-------~~~~~e~~~~~~~~~h~niv~~~~v~~~  387 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSP-----TDQEPAVKIISKRA-------DDNQDEIPISLLVRDHPNIVKSHDVYED  387 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccc-----cccchhheeccccc-------cccccccchhhhhcCCCcceeecceecC
Confidence            46789999999999999999999887     67889999997662       1222377666665 79999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +.+.|+|||++.|+-|.+.+...+..  . .                            +...|++||+.||.|||++||
T Consensus       388 ~~~~~~v~e~l~g~ell~ri~~~~~~--~-~----------------------------e~~~w~~~lv~Av~~LH~~gv  436 (612)
T KOG0603|consen  388 GKEIYLVMELLDGGELLRRIRSKPEF--C-S----------------------------EASQWAAELVSAVDYLHEQGV  436 (612)
T ss_pred             CceeeeeehhccccHHHHHHHhcchh--H-H----------------------------HHHHHHHHHHHHHHHHHhcCe
Confidence            99999999999999998877654211  1 1                            223689999999999999999


Q ss_pred             eeccCCCCceEE-ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          241 VYRDLKPENVLV-REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       241 iHrDLKp~NILl-~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||||+|||+ +..|+++|+|||.++....                                                
T Consensus       437 vhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~------------------------------------------------  468 (612)
T KOG0603|consen  437 VHRDLKPGNILLDGSAGHLRLTYFGFWSELER------------------------------------------------  468 (612)
T ss_pred             eecCCChhheeecCCCCcEEEEEechhhhCch------------------------------------------------
Confidence            999999999999 6899999999999843221                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                       ...+.+-|..|.|||++....|+.++||||||++||+|++|+.||..
T Consensus       469 ---------------------------------~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~  515 (612)
T KOG0603|consen  469 ---------------------------------SCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAA  515 (612)
T ss_pred             ---------------------------------hhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCcccc
Confidence                                             01223568899999999999999999999999999999999999987


Q ss_pred             CChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          400 ENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       400 ~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .... +++.++......     .      ..+.+++|||.+||+.||.+|+++.    +++.||||
T Consensus       516 ~P~~~ei~~~i~~~~~s-----~------~vS~~AKdLl~~LL~~dP~~Rl~~~----~i~~h~w~  566 (612)
T KOG0603|consen  516 HPAGIEIHTRIQMPKFS-----E------CVSDEAKDLLQQLLQVDPALRLGAD----EIGAHPWF  566 (612)
T ss_pred             CCchHHHHHhhcCCccc-----c------ccCHHHHHHHHHhccCChhhCcChh----hhccCcch
Confidence            7665 555555444322     1      1223589999999999999999998    99999999

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=6.1e-40  Score=326.75  Aligned_cols=256  Identities=27%  Similarity=0.382  Sum_probs=200.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|...+.||+|+||.||+|++..     +++.||+|++.............+..|+.+++.++||||+++++++.+....
T Consensus        22 ~~~~~~~lg~g~~g~v~~~~~~~-----~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   96 (313)
T cd06633          22 IFVGLHEIGHGSFGAVYFATNSH-----TNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTA   96 (313)
T ss_pred             HhhcceeeccCCCeEEEEEEECC-----CCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEE
Confidence            47778899999999999999876     6788999998754333234445677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+. |+|.+++.... ..+...                            .+..++.||+.||.|||++||+|||
T Consensus        97 ~lv~e~~~-~~l~~~l~~~~-~~l~~~----------------------------~~~~~~~qi~~al~~LH~~gi~H~d  146 (313)
T cd06633          97 WLVMEYCL-GSASDLLEVHK-KPLQEV----------------------------EIAAITHGALQGLAYLHSHNMIHRD  146 (313)
T ss_pred             EEEEecCC-CCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeecCC
Confidence            99999995 57777765432 122221                            1235789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.+||+|||++....                                                      
T Consensus       147 l~p~nili~~~~~~kL~dfg~~~~~~------------------------------------------------------  172 (313)
T cd06633         147 IKAGNILLTEPGQVKLADFGSASKSS------------------------------------------------------  172 (313)
T ss_pred             CChhhEEECCCCCEEEeecCCCcccC------------------------------------------------------
Confidence            99999999999999999999872110                                                      


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ......|+..|+|||++.   ...++.++|||||||++|+|++|..||...+
T Consensus       173 ----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         173 ----------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             ----------------------------CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        011235888999999984   3457889999999999999999999998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      .......+......  ......     ....+++||.+||+.+|.+||++.    ++++||||+..+
T Consensus       225 ~~~~~~~~~~~~~~--~~~~~~-----~~~~l~~li~~~l~~~P~~Rp~~~----~~l~~~~~~~~~  280 (313)
T cd06633         225 AMSALYHIAQNDSP--TLQSNE-----WTDSFRGFVDYCLQKIPQERPASA----ELLRHDFVRRDR  280 (313)
T ss_pred             hHHHHHHHHhcCCC--CCCccc-----cCHHHHHHHHHHccCChhhCcCHH----HHhcCcccCCCc
Confidence            66666555543221  111111     112489999999999999999998    999999998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-40  Score=323.32  Aligned_cols=261  Identities=28%  Similarity=0.383  Sum_probs=198.6

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeeecCc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFEASH  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~~~  162 (517)
                      |++.+.||+|+||.||+|+++.     +++.||+|++...... ......+..|+.+++++   +||||+++++++...+
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~-----~~~~~aiK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   74 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLN-----TGRFVALKKVRVPLSE-EGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPR   74 (287)
T ss_pred             CeEEEEecccCceEEEEEEECC-----CCCEEEEEEecccccc-chhhhhHHHHHHHHHHhhccCCCCcceEEEEEeecc
Confidence            6889999999999999999876     5788999999743221 11223344577777666   6999999999998777


Q ss_pred             e-----eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          163 Y-----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       163 ~-----~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      .     .|++|||+. ++|.+++.......+++..                            ++.++.||+.||.|||+
T Consensus        75 ~~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~----------------------------~~~~~~~i~~al~~LH~  125 (287)
T cd07838          75 TDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPET----------------------------IKDLMRQLLRGVDFLHS  125 (287)
T ss_pred             CCCCceeEEEehhcc-cCHHHHHHHccCCCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            6     999999996 5898888764332333322                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|++|+||||+||+++.++.+||+|||++......                                             
T Consensus       126 ~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~---------------------------------------------  160 (287)
T cd07838         126 HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE---------------------------------------------  160 (287)
T ss_pred             CCeeeccCChhhEEEccCCCEEEeccCcceeccCC---------------------------------------------
Confidence            99999999999999999999999999987432210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                        .......++..|+|||++.+..++.++|||||||++|+|++|.+||
T Consensus       161 ----------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~  206 (287)
T cd07838         161 ----------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLF  206 (287)
T ss_pred             ----------------------------------cccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcc
Confidence                                              0011234788999999999988999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCC-----CCCC-----------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          398 KGENNEKTLINILKKP-----LTFP-----------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~-----~~~p-----------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      .+....+.+.++....     ..++           .........  ......+.+||.+||+.||.+||++.    +++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~----~il  282 (287)
T cd07838         207 RGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAF----EAL  282 (287)
T ss_pred             cCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHH----HHh
Confidence            9888777766665321     0111           000000000  02234678999999999999999998    999


Q ss_pred             cCCCc
Q 010140          460 RHEFF  464 (517)
Q Consensus       460 ~hp~f  464 (517)
                      +||||
T Consensus       283 ~~~~~  287 (287)
T cd07838         283 QHPYF  287 (287)
T ss_pred             cCcCC
Confidence            99998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=2.6e-40  Score=326.08  Aligned_cols=254  Identities=27%  Similarity=0.416  Sum_probs=199.3

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEE
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCL  166 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  166 (517)
                      ....+||+|+||.||++..+.     +++.||||.+.....   .....+.+|+.+++.++|+||+++++.+..++..|+
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~-----~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   94 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKS-----SGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWV   94 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcC-----CCeEEEEEEecccch---hHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEE
Confidence            334679999999999999876     678999998854321   234556779999999999999999999999999999


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      ||||+++++|.+++...   .+....                            ++.++.|++.||+|||++|++|||||
T Consensus        95 v~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~ql~~~l~~lH~~givH~dl~  143 (292)
T cd06657          95 VMEFLEGGALTDIVTHT---RMNEEQ----------------------------IAAVCLAVLKALSVLHAQGVIHRDIK  143 (292)
T ss_pred             EEecCCCCcHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            99999999998876542   222221                            23678999999999999999999999


Q ss_pred             CCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccc
Q 010140          247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTI  326 (517)
Q Consensus       247 p~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      |+||+++.++.++|+|||++......                                                      
T Consensus       144 p~Nilv~~~~~~~l~dfg~~~~~~~~------------------------------------------------------  169 (292)
T cd06657         144 SDSILLTHDGRVKLSDFGFCAQVSKE------------------------------------------------------  169 (292)
T ss_pred             HHHEEECCCCCEEEcccccceecccc------------------------------------------------------
Confidence            99999999999999999987322100                                                      


Q ss_pred             ccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHH
Q 010140          327 REQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL  406 (517)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~  406 (517)
                                              ........|++.|+|||.+.+..++.++|+||+||++|+|++|..||.+....+..
T Consensus       170 ------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~  225 (292)
T cd06657         170 ------------------------VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM  225 (292)
T ss_pred             ------------------------cccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence                                    00012235889999999998888899999999999999999999999887766555


Q ss_pred             HHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       407 ~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..+............      .....+.++|.+||+.||.+||++.    +++.||||...
T Consensus       226 ~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~~P~~R~~~~----~ll~~~~~~~~  276 (292)
T cd06657         226 KMIRDNLPPKLKNLH------KVSPSLKGFLDRLLVRDPAQRATAA----ELLKHPFLAKA  276 (292)
T ss_pred             HHHHhhCCcccCCcc------cCCHHHHHHHHHHHhCCcccCcCHH----HHhcChHHhcc
Confidence            544332211111111      1123489999999999999999998    99999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=4.1e-40  Score=325.53  Aligned_cols=263  Identities=21%  Similarity=0.258  Sum_probs=195.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      ++|++.+.||+|+||.||+|..+...   ....+++|.++...  .......+.+|+.++.++ +||||+++++++...+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~---~~~~~~ik~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~   76 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDG---LKMNAAIKMLKEFA--SENDHRDFAGELEVLCKLGHHPNIINLLGACENRG   76 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCC---CcceeEEEEccccC--CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC
Confidence            68999999999999999999887631   12347888876321  112345567799999999 7999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++..............            ..+  .........++.++.||+.||+|||++||+|
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~------------~~~--~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH  142 (297)
T cd05089          77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAK------------EHG--TASTLTSQQLLQFASDVATGMQYLSEKQFIH  142 (297)
T ss_pred             cceEEEEecCCCcHHHHHHhcccccccccccc------------ccC--ccCCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            99999999999999999876432111100000            000  0011223344578999999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++......                                                  
T Consensus       143 ~dlkp~Nill~~~~~~kl~dfg~~~~~~~~--------------------------------------------------  172 (297)
T cd05089         143 RDLAARNVLVGENLASKIADFGLSRGEEVY--------------------------------------------------  172 (297)
T ss_pred             CcCCcceEEECCCCeEEECCcCCCccccce--------------------------------------------------
Confidence            999999999999999999999987321100                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                   .......++..|+|||++.+..++.++|||||||++|||++ |..||.+..
T Consensus       173 -----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~  223 (297)
T cd05089         173 -----------------------------VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT  223 (297)
T ss_pred             -----------------------------eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence                                         00001123457999999998889999999999999999997 999999888


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....+..+... +. ...      ....+.+||.+||+.||.+||+++
T Consensus       224 ~~~~~~~~~~~~~~-~~-~~~------~~~~~~~li~~~l~~~p~~Rp~~~  266 (297)
T cd05089         224 CAELYEKLPQGYRM-EK-PRN------CDDEVYELMRQCWRDRPYERPPFA  266 (297)
T ss_pred             HHHHHHHHhcCCCC-CC-CCC------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            87777766554221 11 111      122489999999999999999998

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=5.3e-40  Score=319.54  Aligned_cols=254  Identities=23%  Similarity=0.284  Sum_probs=196.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++....  ....+|+|.++.....  .....+..|+.+++.++||||+++++++..++
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGK--REIPVAIKTLKAGYTE--KQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK   78 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCC--CceEEEEEECCCCCCH--HHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            4679999999999999999998864311  3457999998654221  23456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++.... ..+....                            +..++.||+.||+|||++|++|
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~~i~~~l~~lH~~~i~h  129 (267)
T cd05066          79 PVMIVTEYMENGSLDAFLRKHD-GQFTVIQ----------------------------LVGMLRGIASGMKYLSDMGYVH  129 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEee
Confidence            9999999999999999987642 1222221                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||+++.+......                                               
T Consensus       130 ~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~-----------------------------------------------  162 (267)
T cd05066         130 RDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-----------------------------------------------  162 (267)
T ss_pred             hhhchhcEEECCCCeEEeCCCCcccccccccce-----------------------------------------------
Confidence            999999999999999999999998543210000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|+|||||++||+++ |..||.+..
T Consensus       163 ----------------------------~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~  214 (267)
T cd05066         163 ----------------------------AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS  214 (267)
T ss_pred             ----------------------------eeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC
Confidence                                        000111234568999999998889999999999999999886 999998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....+.... ..+... .      .+..+.+++.+||+.+|.+||++.
T Consensus       215 ~~~~~~~~~~~~-~~~~~~-~------~~~~~~~li~~~l~~~p~~Rp~~~  257 (267)
T cd05066         215 NQDVIKAIEEGY-RLPAPM-D------CPAALHQLMLDCWQKDRNERPKFE  257 (267)
T ss_pred             HHHHHHHHhCCC-cCCCCC-C------CCHHHHHHHHHHcccCchhCCCHH
Confidence            766666665442 222211 1      122489999999999999999997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=5.4e-40  Score=318.19  Aligned_cols=248  Identities=22%  Similarity=0.284  Sum_probs=192.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.+..      ...+|+|.+.....    ....+.+|+.+++.++||||+++++++. 
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~------~~~~~lK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-   71 (260)
T cd05069           3 IPRESLRLDVKLGQGCFGEVWMGTWNG------TTKVAIKTLKPGTM----MPEAFLQEAQIMKKLRHDKLVPLYAVVS-   71 (260)
T ss_pred             CChHHeeeeeeecCcCCCeEEEEEEcC------CceEEEEEcccCCc----cHHHHHHHHHHHHhCCCCCeeeEEEEEc-
Confidence            345779999999999999999998764      24589998865432    2245667999999999999999999885 


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++|+|.+++.......+.+...                            ..++.||+.||.|||++||
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~al~~lH~~~i  123 (260)
T cd05069          72 EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQL----------------------------VDMAAQIADGMAYIERMNY  123 (260)
T ss_pred             CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCE
Confidence            456899999999999999987643222222222                            3678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.++|+|||+++.......                                              
T Consensus       124 ~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------  157 (260)
T cd05069         124 IHRDLRAANILVGDNLVCKIADFGLARLIEDNEY----------------------------------------------  157 (260)
T ss_pred             eecccCcceEEEcCCCeEEECCCccceEccCCcc----------------------------------------------
Confidence            9999999999999999999999999843221000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......++..|+|||.+.+..++.++|||||||++|+|++ |..||.+
T Consensus       158 -------------------------------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  206 (260)
T cd05069         158 -------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG  206 (260)
T ss_pred             -------------------------------cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                           00011235678999999988889999999999999999999 9999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ....+....+.... ..+.. ..      .+..+.+||.+||..||++||++.
T Consensus       207 ~~~~~~~~~~~~~~-~~~~~-~~------~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05069         207 MVNREVLEQVERGY-RMPCP-QG------CPESLHELMKLCWKKDPDERPTFE  251 (260)
T ss_pred             CCHHHHHHHHHcCC-CCCCC-cc------cCHHHHHHHHHHccCCcccCcCHH
Confidence            87777666665432 11111 11      123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=6e-40  Score=321.39  Aligned_cols=259  Identities=18%  Similarity=0.203  Sum_probs=193.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||+||+|.+...... ....+++|.+....  .......+..|+.++..++||||+++++++. 
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~-~~~~~~~k~~~~~~--~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-   79 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDS-IKIPVAIKTIQDRS--GRQTFQEITDHMLAMGSLDHAYIVRLLGICP-   79 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCc-eeeEEEEeeccccc--chHHHHHHHHHHHHHhcCCCCCcceEEEEEC-
Confidence            4457899999999999999999998653211 12358888875432  1233456667888999999999999999875 


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +...+++|||+++|+|.+++.... ..+...                            .+..++.||+.||+|||++|+
T Consensus        80 ~~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~~l~~lH~~~i  130 (279)
T cd05111          80 GASLQLVTQLSPLGSLLDHVRQHR-DSLDPQ----------------------------RLLNWCVQIAKGMYYLEEHRM  130 (279)
T ss_pred             CCccEEEEEeCCCCcHHHHHHhcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCE
Confidence            456789999999999999987542 122222                            123678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       131 iH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------  164 (279)
T cd05111         131 VHRNLAARNILLKSDSIVQIADFGVADLLYPDDK----------------------------------------------  164 (279)
T ss_pred             eccccCcceEEEcCCCcEEEcCCccceeccCCCc----------------------------------------------
Confidence            9999999999999999999999999843221000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........|+..|+|||.+.+..++.++|||||||++|||++ |..||.+
T Consensus       165 ------------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~  214 (279)
T cd05111         165 ------------------------------KYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAG  214 (279)
T ss_pred             ------------------------------ccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence                                          001122346778999999998889999999999999999998 9999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .........+..+... +... ..      ..++.+++.+||..||++||++.    |+++
T Consensus       215 ~~~~~~~~~~~~~~~~-~~~~-~~------~~~~~~li~~c~~~~p~~Rps~~----el~~  263 (279)
T cd05111         215 MRPHEVPDLLEKGERL-AQPQ-IC------TIDVYMVMVKCWMIDENVRPTFK----ELAN  263 (279)
T ss_pred             CCHHHHHHHHHCCCcC-CCCC-CC------CHHHHHHHHHHcCCCcccCcCHH----HHHH
Confidence            7765544444333222 1111 11      12478999999999999999997    5544

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=4.2e-40  Score=320.90  Aligned_cols=259  Identities=20%  Similarity=0.222  Sum_probs=191.5

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-----
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-----  160 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----  160 (517)
                      |.+.+.||+|+||.||+|++....   ....+|+|.++.... .......+.+|+.+++.++||||+++++++..     
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~---~~~~~a~k~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   76 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDD---SILKVAVKTMKIAIC-TRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESE   76 (272)
T ss_pred             CccccccCcccCceEEEeEEccCC---CeeeEEEEecccCcC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCccc
Confidence            457789999999999999987521   123689998865421 12345667779999999999999999997632     


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ....++||||+++|+|.+++.......-.                        .......+..++.||+.||+|||++|
T Consensus        77 ~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~  132 (272)
T cd05075          77 GYPSPVVILPFMKHGDLHSFLLYSRLGDCP------------------------QYLPTQMLVKFMTDIASGMEYLSSKS  132 (272)
T ss_pred             CCCCcEEEEEeCCCCcHHHHHHHhcccCCc------------------------ccCCHHHHHHHHHHHHHHHHHHHHCC
Confidence             23578999999999999887532111000                        00111223477899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.......                                             
T Consensus       133 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------  167 (272)
T cd05075         133 FIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDY---------------------------------------------  167 (272)
T ss_pred             eeccccchhheEEcCCCCEEECCCCcccccCcccc---------------------------------------------
Confidence            99999999999999999999999999854321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........+++.|+|||.+.+..++.++|||||||++|||++ |+.||.
T Consensus       168 -------------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  216 (272)
T cd05075         168 -------------------------------YRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYP  216 (272)
T ss_pred             -------------------------------eecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCC
Confidence                                           000112246778999999998889999999999999999999 899998


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +....+....+..+......  ..      ....+.++|.+||+.||++||++.    ++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~p~~Rps~~----~l~~  266 (272)
T cd05075         217 GVENSEIYDYLRQGNRLKQP--PD------CLDGLYSLMSSCWLLNPKDRPSFE----TLRC  266 (272)
T ss_pred             CCCHHHHHHHHHcCCCCCCC--CC------CCHHHHHHHHHHcCCCcccCcCHH----HHHH
Confidence            88777766666654321111  11      122489999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1e-39  Score=322.58  Aligned_cols=267  Identities=22%  Similarity=0.286  Sum_probs=196.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCC-----------CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPM-----------VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF  150 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~-----------~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn  150 (517)
                      ..++|++.+.||+|+||.||+|++....           .......+|+|++.....  ......+.+|+.+|+.++|||
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~--~~~~~~~~~E~~~l~~l~~~~   80 (296)
T cd05095           3 PRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN--KNARNDFLKEIKIMSRLKDPN   80 (296)
T ss_pred             ChhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCC
Confidence            3467999999999999999999765321           111345799999875421  233456777999999999999


Q ss_pred             ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       151 Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                      |+++++++..++..|+||||+++|+|.+++............                   .........+..++.||+.
T Consensus        81 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~  141 (296)
T cd05095          81 IIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKA-------------------DVVTISYSTLIFMATQIAS  141 (296)
T ss_pred             cceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccc-------------------cccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764322111000                   0011222334578999999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ||+|||++||+||||||+|||++.++.++|+|||+++.+.....                                    
T Consensus       142 al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~------------------------------------  185 (296)
T cd05095         142 GMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDY------------------------------------  185 (296)
T ss_pred             HHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCCcc------------------------------------
Confidence            99999999999999999999999999999999999843211000                                    


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~el  390 (517)
                                                              ........+++.|+|||...+..++.++|||||||++|||
T Consensus       186 ----------------------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el  225 (296)
T cd05095         186 ----------------------------------------YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEI  225 (296)
T ss_pred             ----------------------------------------eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHH
Confidence                                                    0001122456789999999888899999999999999999


Q ss_pred             hh--CCCCCCCCChHHHHHHHhc------CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          391 LY--GTTPFKGENNEKTLINILK------KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       391 lt--G~~Pf~~~~~~~~~~~i~~------~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ++  |..||...+..+.......      .....+.. ..      +...+.+||.+||+.||.+||++.
T Consensus       226 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~li~~cl~~~p~~Rp~~~  288 (296)
T cd05095         226 LTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKP-AL------CPDSLYKLMLSCWRRNAKERPSFQ  288 (296)
T ss_pred             HHhCCCCCccccChHHHHHHHHHHHhhccccccCCCC-CC------CCHHHHHHHHHHcCCCcccCCCHH
Confidence            98  7899987766555443321      11111111 11      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=1.2e-39  Score=315.78  Aligned_cols=249  Identities=18%  Similarity=0.304  Sum_probs=195.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++.+.||+|+||.||+|....      +..+|+|.+.....    ....+.+|+.+++.++|+||+++++.+.
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~vy~~~~~~------~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~   71 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFGEVWMATYNK------HTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT   71 (260)
T ss_pred             cccccceeEEeEecCccceEEEEEEecC------CccEEEEecCCChh----HHHHHHHHHHHHHhcCCCCcceEEEEEc
Confidence            3566899999999999999999998653      35699998875432    2345677999999999999999999988


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      . ...|+||||+++|+|.+++........+...                            +..++.||+.||.|||++|
T Consensus        72 ~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~aL~~lH~~~  122 (260)
T cd05073          72 K-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPK----------------------------LIDFSAQIAEGMAFIEQRN  122 (260)
T ss_pred             C-CCeEEEEEeCCCCcHHHHHHhCCccccCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence            7 7889999999999999998765333333222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ++||||||+||+++.++.+||+|||++..+.....                                             
T Consensus       123 i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---------------------------------------------  157 (260)
T cd05073         123 YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY---------------------------------------------  157 (260)
T ss_pred             ccccccCcceEEEcCCCcEEECCCcceeeccCCCc---------------------------------------------
Confidence            99999999999999999999999998743221000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                      .......++..|+|||++.+..++.++|||||||++|+|++ |..||.
T Consensus       158 --------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~  205 (260)
T cd05073         158 --------------------------------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP  205 (260)
T ss_pred             --------------------------------ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCC
Confidence                                            00011235677999999998889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.+.......+.... ..+...       ....++.+++.+||+.||++||++.
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~i~~~l~~~p~~Rp~~~  251 (260)
T cd05073         206 GMSNPEVIRALERGY-RMPRPE-------NCPEELYNIMMRCWKNRPEERPTFE  251 (260)
T ss_pred             CCCHHHHHHHHhCCC-CCCCcc-------cCCHHHHHHHHHHcccCcccCcCHH
Confidence            887766666555432 111111       1223589999999999999999986

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-39  Score=315.31  Aligned_cols=244  Identities=22%  Similarity=0.281  Sum_probs=195.9

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||.|+||.||+|...       ++.||+|.+.....    ...++..|+.+++.++|+||+++++++.+
T Consensus         3 ~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   71 (256)
T cd05039           3 INSKELKLGATIGKGEFGDVMLGDYR-------GQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQ   71 (256)
T ss_pred             cChhhccceeeeecCCCceEEEEEec-------CcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcC
Confidence            45678999999999999999999865       36799999976643    34567779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....|+||||+++++|.+++.......+.+...                            ..++.|++.||.|||++||
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~~l~~lh~~~i  123 (256)
T cd05039          72 GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQ----------------------------LGFALDVCEGMEYLEEKNF  123 (256)
T ss_pred             CCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999987653323333222                            3678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.+||+|||+++.....                                                
T Consensus       124 ~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~------------------------------------------------  155 (256)
T cd05039         124 VHRDLAARNVLVSEDLVAKVSDFGLAKEASQG------------------------------------------------  155 (256)
T ss_pred             cchhcccceEEEeCCCCEEEcccccccccccc------------------------------------------------
Confidence            99999999999999999999999998432100                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                       .....++..|+|||.+.+..++.++|||||||++|+|++ |..||..
T Consensus       156 ---------------------------------~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  202 (256)
T cd05039         156 ---------------------------------QDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  202 (256)
T ss_pred             ---------------------------------cccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCC
Confidence                                             001124567999999988889999999999999999997 9999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ....+....+......  ....      ..+..+.+||.+||..+|++||++.
T Consensus       203 ~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~  247 (256)
T cd05039         203 IPLKDVVPHVEKGYRM--EAPE------GCPPEVYKVMKDCWELDPAKRPTFK  247 (256)
T ss_pred             CCHHHHHHHHhcCCCC--CCcc------CCCHHHHHHHHHHhccChhhCcCHH
Confidence            8776666555543211  1111      1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.5e-42  Score=311.18  Aligned_cols=270  Identities=26%  Similarity=0.370  Sum_probs=204.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .+.|+-..+||+|.||+||+|+.++     +++.||+|++--+... ...-....+|+.+|..|+|+|++.+++.+..  
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n-----~~kkvalkkvlmeneK-eGfpitalreikiL~~lkHenv~nliEic~tk~   89 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKN-----TGKKVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKA   89 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcC-----ccchhHHHHHHHhccc-cCCcHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Confidence            4568888899999999999999987     6777998876543211 1222345569999999999999999987742  


Q ss_pred             ------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          161 ------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       161 ------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                            ...+||||.+|+. ||.-++.... .++...                            +++.++.+++.||.|
T Consensus        90 Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~~-vr~sls----------------------------~Ikk~Mk~Lm~GL~~  139 (376)
T KOG0669|consen   90 TPTNRDRATFYLVFDFCEH-DLAGLLSNRK-VRFSLS----------------------------EIKKVMKGLMNGLYY  139 (376)
T ss_pred             CCcccccceeeeeHHHhhh-hHHHHhcCcc-ccccHH----------------------------HHHHHHHHHHHHHHH
Confidence                  3458999999954 8887765431 233333                            345889999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      +|...|+|||+||+|+||+.+|.+||+|||+++.+.......                                      
T Consensus       140 iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~--------------------------------------  181 (376)
T KOG0669|consen  140 IHRNKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVV--------------------------------------  181 (376)
T ss_pred             HHHhhHHhhcccHhhEEEcCCceEEeeccccccceecccccC--------------------------------------
Confidence            999999999999999999999999999999996654322111                                      


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG  393 (517)
                                                          ..+.+..+-|.+|++||.+.|.. |+++.|||+.|||+.||++|
T Consensus       182 ------------------------------------kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtr  225 (376)
T KOG0669|consen  182 ------------------------------------KPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTR  225 (376)
T ss_pred             ------------------------------------CCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHcc
Confidence                                                12244557799999999999875 99999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCC-----CCCCCCCCC---------------------chhHHhhhhHHHHHHHhccCCccc
Q 010140          394 TTPFKGENNEKTLINILKKPL-----TFPRIGVSS---------------------SKEFEEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~-----~~p~~~~~~---------------------~~~~~~~~~l~dLi~~~L~~dP~~  447 (517)
                      .+.+.+.++...+..|..-..     .+|......                     ...+....++.||+.+||..||.+
T Consensus       226 spimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~k  305 (376)
T KOG0669|consen  226 SPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTK  305 (376)
T ss_pred             CccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCccc
Confidence            999999988877776643111     111111000                     000011125789999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCC
Q 010140          448 RIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~  466 (517)
                      |+.+.    ++++|.||..
T Consensus       306 R~~ad----~alnh~~F~k  320 (376)
T KOG0669|consen  306 RIDAD----QALNHDFFWK  320 (376)
T ss_pred             CcchH----hhhchhhhhc
Confidence            99998    9999999964

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=3.1e-40  Score=328.19  Aligned_cols=275  Identities=25%  Similarity=0.302  Sum_probs=198.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .++|++.++||+|+||.||+|+++.     +++.+|||++...... ......+.+|+.+++.++||||+++++++..  
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIK-----TGRVVALKKILMHNEK-DGFPITALREIKILKKLKHPNVVPLIDMAVERP   80 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECC-----CCcEEEEEEEEeccCC-CCcchhHHHHHHHHHhcCCCCccchhhheeccc
Confidence            5899999999999999999999876     6788999988644211 1112344569999999999999999998743  


Q ss_pred             ------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          161 ------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       161 ------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                            ...+|+||||+. ++|...+.... ..+++..                            ++.++.||+.||+|
T Consensus        81 ~~~~~~~~~~~lv~~~~~-~~l~~~~~~~~-~~~~~~~----------------------------~~~i~~~l~~al~~  130 (311)
T cd07866          81 DKSKRKRGSVYMVTPYMD-HDLSGLLENPS-VKLTESQ----------------------------IKCYMLQLLEGINY  130 (311)
T ss_pred             ccccccCceEEEEEecCC-cCHHHHHhccc-cCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence                  335799999995 57776665421 2232222                            24678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.++|+|||+++...........                                    
T Consensus       131 lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~------------------------------------  174 (311)
T cd07866         131 LHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKG------------------------------------  174 (311)
T ss_pred             HHhCCeecCCCCHHHEEECCCCCEEECcCccchhccCCCccccc------------------------------------
Confidence            99999999999999999999999999999998543211100000                                    


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG  393 (517)
                                                     .............|++.|+|||.+.+. .++.++|||||||++|||++|
T Consensus       175 -------------------------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g  223 (311)
T cd07866         175 -------------------------------GGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTR  223 (311)
T ss_pred             -------------------------------CCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhC
Confidence                                           000001122345789999999998764 478999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCC-----------C--------CCCCc-hh-HHhhhhHHHHHHHhccCCcccccCCC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPR-----------I--------GVSSS-KE-FEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~-----------~--------~~~~~-~~-~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ++||.+.+.......+.......+.           .        ..... .. ......+.+||.+||+.||.+|||+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~  303 (311)
T cd07866         224 RPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTAS  303 (311)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHH
Confidence            9999988776655554431110000           0        00000 00 01123588999999999999999997


Q ss_pred             CChHHhhcCCCc
Q 010140          453 KGSVEIKRHEFF  464 (517)
Q Consensus       453 ~~~~ell~hp~f  464 (517)
                          |++.||||
T Consensus       304 ----ell~~~~f  311 (311)
T cd07866         304 ----DALEHPYF  311 (311)
T ss_pred             ----HHhcCCCC
Confidence                99999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.7e-40  Score=333.18  Aligned_cols=267  Identities=25%  Similarity=0.306  Sum_probs=205.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc--
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH--  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--  162 (517)
                      +|++.+.||+|+||.||+|++..     +++.||||.+..... .....+.+.+|+.+++.++||||+++++++....  
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKR-----TGRKVAIKKISNVFD-DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPE   74 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCC-----CCcEEEEEeeccccc-cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcc
Confidence            58999999999999999999876     578899999875421 1234456777999999999999999999998765  


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                         .+|+||||++ ++|.+++....  .+.+..                            ++.++.||+.||+|||++|
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~l~~~~--~l~~~~----------------------------~~~i~~~l~~~l~~LH~~g  123 (330)
T cd07834          75 DFNDVYIVTELME-TDLHKVIKSPQ--PLTDDH----------------------------IQYFLYQILRGLKYLHSAN  123 (330)
T ss_pred             cccceEEEecchh-hhHHHHHhCCC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence               7899999996 58888776532  232222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.++|+|||++.........                                            
T Consensus       124 i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~--------------------------------------------  159 (330)
T cd07834         124 VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDE--------------------------------------------  159 (330)
T ss_pred             eecCCCCHHHEEEcCCCCEEEcccCceEeecccccc--------------------------------------------
Confidence            999999999999999999999999998543211000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........+++.|+|||++.+. .++.++|||||||++|+|++|.+||.
T Consensus       160 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~  208 (330)
T cd07834         160 -------------------------------KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFP  208 (330)
T ss_pred             -------------------------------cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcC
Confidence                                           0011233588999999999888 78999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCC-----C------------chh-----HHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          399 GENNEKTLINILKKPLTFPRIGVS-----S------------SKE-----FEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~-----~------------~~~-----~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      +.+..+.+..+.......+.....     .            ...     .....++.+||.+||++||.+||++.    
T Consensus       209 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~----  284 (330)
T cd07834         209 GRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITAD----  284 (330)
T ss_pred             CCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHH----
Confidence            888777666665422111110000     0            000     01234688999999999999999998    


Q ss_pred             HhhcCCCcCCC
Q 010140          457 EIKRHEFFKGI  467 (517)
Q Consensus       457 ell~hp~f~~~  467 (517)
                      ++++||||+++
T Consensus       285 ~ll~~~~~~~~  295 (330)
T cd07834         285 EALAHPYLAQL  295 (330)
T ss_pred             HHHhCccHHhh
Confidence            99999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.5e-39  Score=312.33  Aligned_cols=253  Identities=30%  Similarity=0.491  Sum_probs=202.6

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|++|.||+|.+..     +++.+++|++.....   .....+.+|+.+++.++||||+++++.+..+...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   72 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKR-----TGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDEL   72 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECC-----CCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeE
Confidence            58899999999999999999876     568899999976543   2445677799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++++||++|++|.+++.... ..++...                            +..++.|++.||.|||++|++|||
T Consensus        73 ~l~~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~~i~~~l~~lh~~~i~h~d  123 (253)
T cd05122          73 WIVMEFCSGGSLKDLLKSTN-QTLTESQ----------------------------IAYVCKELLKGLEYLHSNGIIHRD  123 (253)
T ss_pred             EEEEecCCCCcHHHHHhhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHhhcCCEecCC
Confidence            99999999999999887642 1222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |+|+||+++.++.++|+|||.+.......                                                   
T Consensus       124 l~p~ni~i~~~~~~~l~d~~~~~~~~~~~---------------------------------------------------  152 (253)
T cd05122         124 IKAANILLTSDGEVKLIDFGLSAQLSDTK---------------------------------------------------  152 (253)
T ss_pred             CCHHHEEEccCCeEEEeeccccccccccc---------------------------------------------------
Confidence            99999999999999999999874322100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                  ......|+..|+|||.+.+..++.++|||||||++|+|++|..||...+...
T Consensus       153 ----------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~  204 (253)
T cd05122         153 ----------------------------ARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK  204 (253)
T ss_pred             ----------------------------cccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH
Confidence                                        0123458889999999998888999999999999999999999998876555


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      ....+.....  +......    .....+.++|.+||+.||++||++.    ++++|||
T Consensus       205 ~~~~~~~~~~--~~~~~~~----~~~~~~~~~i~~~l~~~p~~R~t~~----~~l~~~~  253 (253)
T cd05122         205 ALFKIATNGP--PGLRNPE----KWSDEFKDFLKKCLQKNPEKRPTAE----QLLKHPF  253 (253)
T ss_pred             HHHHHHhcCC--CCcCccc----ccCHHHHHHHHHHccCChhhCCCHH----HHhcCCC
Confidence            5444443221  1111111    0122589999999999999999998    9999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=3.3e-40  Score=331.90  Aligned_cols=281  Identities=26%  Similarity=0.306  Sum_probs=202.4

Q ss_pred             CCce-EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH-----------HHhHHHHHHHHHHhcCCCCc
Q 010140           84 DHFR-LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-----------KLHRADMEKVILTMLDHPFL  151 (517)
Q Consensus        84 ~~y~-i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~-----------~~~~~~~E~~il~~l~HpnI  151 (517)
                      ++|. +.+.||.|+||+||+|.+..     .++.||||++.........           ....+.+|+.+++.++||||
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   82 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTL-----TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENI   82 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECC-----CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcce
Confidence            4665 45779999999999999876     6788999998654322100           01245679999999999999


Q ss_pred             cceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       152 v~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      +++++++..++..|+||||+. |+|.+++...  ..++...                            ...++.||+.|
T Consensus        83 v~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~----------------------------~~~~~~ql~~a  131 (335)
T PTZ00024         83 MGLVDVYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQ----------------------------VKCILLQILNG  131 (335)
T ss_pred             eeeeEEEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHH
Confidence            999999999999999999995 6898887653  2222222                            23678999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      |+|||++||+||||||+||+++.++.++|+|||+++..........                                ..
T Consensus       132 L~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--------------------------------~~  179 (335)
T PTZ00024        132 LNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDT--------------------------------LS  179 (335)
T ss_pred             HHHHHhCCeecccccHHHeEECCCCCEEECCccceeeccccccccc--------------------------------cc
Confidence            9999999999999999999999999999999999854321100000                                00


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~el  390 (517)
                      ..                                .............+++.|+|||.+.+.. ++.++|||||||++|+|
T Consensus       180 ~~--------------------------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el  227 (335)
T PTZ00024        180 KD--------------------------------ETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAEL  227 (335)
T ss_pred             cc--------------------------------ccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHH
Confidence            00                                0000001112335788999999997754 68999999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCC-----CCCCC---------CCCchh-----HHhhhhHHHHHHHhccCCcccccCC
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLT-----FPRIG---------VSSSKE-----FEEVVKLQDLISKLLVKNPKKRIGS  451 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~-----~p~~~---------~~~~~~-----~~~~~~l~dLi~~~L~~dP~~R~t~  451 (517)
                      ++|.+||.+.+..+.+..+......     ++...         ......     .....++.+||.+||+.||++||++
T Consensus       228 ~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~  307 (335)
T PTZ00024        228 LTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISA  307 (335)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCH
Confidence            9999999988877766655431110     11000         000000     0113458899999999999999999


Q ss_pred             CCChHHhhcCCCcCCCC
Q 010140          452 LKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       452 ~~~~~ell~hp~f~~~~  468 (517)
                      +    |++.||||++..
T Consensus       308 ~----~~l~~~~~~~~~  320 (335)
T PTZ00024        308 K----EALKHEYFKSDP  320 (335)
T ss_pred             H----HHhcCcccCCCC
Confidence            8    999999998643

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.5e-40  Score=320.48  Aligned_cols=255  Identities=27%  Similarity=0.380  Sum_probs=192.1

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEE
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCL  166 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  166 (517)
                      .+.+.||.|.||.||+|..+. .....+..|+||+++....  ......+..|+.++++++||||+++++++...+..++
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~-~~~~~~~~V~vk~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~l   78 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQ-KDNDKNQPVAVKILKPSSS--EEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFL   78 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEES-TTTSSEEEEEEEEESTTSS--HHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEc-ccCCCCEEEEEEEeccccc--cccceeeeecccccccccccccccccccccccccccc
Confidence            578899999999999999983 1122568899999964321  2335667779999999999999999999998888999


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      |||||++|+|.+++.......++....                            ..|+.||+.||.|||+++|+|+||+
T Consensus        79 v~e~~~~g~L~~~L~~~~~~~~~~~~~----------------------------~~i~~~i~~~l~~Lh~~~iiH~~l~  130 (259)
T PF07714_consen   79 VMEYCPGGSLDDYLKSKNKEPLSEQQR----------------------------LSIAIQIAEALSYLHSNNIIHGNLS  130 (259)
T ss_dssp             EEE--TTEBHHHHHHHTCTTTSBHHHH----------------------------HHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             ccccccccccccccccccccccccccc----------------------------ccccccccccccccccccccccccc
Confidence            999999999999998863333333222                            3678999999999999999999999


Q ss_pred             CCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccc
Q 010140          247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTI  326 (517)
Q Consensus       247 p~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      ++|||++.++.+||+|||++........                                                    
T Consensus       131 ~~nill~~~~~~Kl~~f~~~~~~~~~~~----------------------------------------------------  158 (259)
T PF07714_consen  131 PSNILLDSNGQVKLSDFGLSRPISEKSK----------------------------------------------------  158 (259)
T ss_dssp             GGGEEEETTTEEEEESTTTGEETTTSSS----------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccc----------------------------------------------------
Confidence            9999999999999999999844311000                                                    


Q ss_pred             ccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHH
Q 010140          327 REQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKT  405 (517)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~  405 (517)
                                              ........+...|+|||.+.+..++.++||||||+++|||++ |+.||...+..+.
T Consensus       159 ------------------------~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~  214 (259)
T PF07714_consen  159 ------------------------YKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEI  214 (259)
T ss_dssp             ------------------------EEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHH
T ss_pred             ------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                    001112236678999999998889999999999999999999 7899999888887


Q ss_pred             HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       406 ~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ...+........  .....      ..+.++|.+||..||++||++.    ++++
T Consensus       215 ~~~~~~~~~~~~--~~~~~------~~~~~li~~C~~~~p~~RPs~~----~i~~  257 (259)
T PF07714_consen  215 IEKLKQGQRLPI--PDNCP------KDIYSLIQQCWSHDPEKRPSFQ----EILQ  257 (259)
T ss_dssp             HHHHHTTEETTS--BTTSB------HHHHHHHHHHT-SSGGGS--HH----HHHH
T ss_pred             ccccccccccee--ccchh------HHHHHHHHHHcCCChhhCcCHH----HHHh
Confidence            777755433211  11112      2489999999999999999997    6653

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=3.4e-40  Score=332.70  Aligned_cols=265  Identities=23%  Similarity=0.309  Sum_probs=196.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|++.+.||.|+||.||+|.++.     +++.||+|.+.....   ...+.+.+|+.+++.++||||+++++++...  
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~-----~~~~v~iK~i~~~~~---~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~   76 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSD-----CDKRVAVKKIVLTDP---QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGS   76 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECC-----CCcEEEEEEEecCCC---chHHHHHHHHHHHHhcCCCcchhhHhhhccccc
Confidence            689999999999999999999886     678899999865432   2345566799999999999999999877543  


Q ss_pred             ------------ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          162 ------------HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       162 ------------~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                                  ...|+||||++ ++|.+++...   .++...                            ++.++.||+
T Consensus        77 ~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~l~~~~----------------------------~~~~~~qi~  124 (342)
T cd07854          77 DLTEDVGSLTELNSVYIVQEYME-TDLANVLEQG---PLSEEH----------------------------ARLFMYQLL  124 (342)
T ss_pred             ccccccccccccceEEEEeeccc-ccHHHHHHcC---CCCHHH----------------------------HHHHHHHHH
Confidence                        35799999996 6888776532   233322                            236789999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      .||.|||++||+||||||+||+++. ++.+||+|||+++........                                 
T Consensus       125 ~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~---------------------------------  171 (342)
T cd07854         125 RGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSH---------------------------------  171 (342)
T ss_pred             HHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceecCCcccc---------------------------------
Confidence            9999999999999999999999974 557899999998432210000                                 


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFL  387 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil  387 (517)
                                                                ........|+..|+|||++.+ ..++.++|||||||++
T Consensus       172 ------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil  209 (342)
T cd07854         172 ------------------------------------------KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIF  209 (342)
T ss_pred             ------------------------------------------ccccccccccccccCHHHHhCccccCchhhHHHHHHHH
Confidence                                                      000112257889999998765 4578999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCC-----------------CC-C-CCchh--HHhhhhHHHHHHHhccCCcc
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPR-----------------IG-V-SSSKE--FEEVVKLQDLISKLLVKNPK  446 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~-----------------~~-~-~~~~~--~~~~~~l~dLi~~~L~~dP~  446 (517)
                      |+|++|+.||.+.+..+....+.........                 .. . .....  .....++.+||.+||+.||.
T Consensus       210 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  289 (342)
T cd07854         210 AEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPM  289 (342)
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCch
Confidence            9999999999887766555554432110000                 00 0 00000  01224588999999999999


Q ss_pred             cccCCCCChHHhhcCCCcCCC
Q 010140          447 KRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       447 ~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +||++.    |+++||||+..
T Consensus       290 ~R~t~~----ell~h~~~~~~  306 (342)
T cd07854         290 DRLTAE----EALMHPYMSCY  306 (342)
T ss_pred             hccCHH----HHhCCCccccc
Confidence            999998    99999999854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=8.5e-40  Score=316.25  Aligned_cols=244  Identities=21%  Similarity=0.247  Sum_probs=187.4

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEe
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEY  170 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~  170 (517)
                      +||+|+||.||+|.++..   .+++.+|+|+++..... ......+..|+.+++.++||||+++++++. .+..++||||
T Consensus         2 ~lg~G~~g~v~~~~~~~~---~~~~~~aiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~   76 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMK---KSEKTVAVKILKNDNND-PALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMEL   76 (257)
T ss_pred             cCCCcCCcceEEeEEecC---CCceEEEEEEccCCCCc-HHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEec
Confidence            689999999999976532   14578999998644221 234456777999999999999999999876 4567999999


Q ss_pred             cCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCce
Q 010140          171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV  250 (517)
Q Consensus       171 ~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NI  250 (517)
                      +++|+|.+++....  .++...                            ...++.||+.||+|||++||+||||||.||
T Consensus        77 ~~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~al~~lH~~~i~H~dlkp~ni  126 (257)
T cd05116          77 AELGPLNKFLQKNK--HVTEKN----------------------------ITELVHQVSMGMKYLEETNFVHRDLAARNV  126 (257)
T ss_pred             CCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEeecccchhhE
Confidence            99999999886532  222222                            236789999999999999999999999999


Q ss_pred             EEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 010140          251 LVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQV  330 (517)
Q Consensus       251 Ll~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (517)
                      |++.++.+||+|||+++........                                                       
T Consensus       127 ll~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------------------  151 (257)
T cd05116         127 LLVTQHYAKISDFGLSKALGADENY-------------------------------------------------------  151 (257)
T ss_pred             EEcCCCeEEECCCccccccCCCCCe-------------------------------------------------------
Confidence            9999999999999998443211000                                                       


Q ss_pred             CCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHH
Q 010140          331 DGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINI  409 (517)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i  409 (517)
                                          ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+....+....+
T Consensus       152 --------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i  211 (257)
T cd05116         152 --------------------YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMI  211 (257)
T ss_pred             --------------------eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence                                000111235678999999988889999999999999999998 99999988777777766


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+... + ....      .+.++.+||.+||+.||++||++.
T Consensus       212 ~~~~~~-~-~~~~------~~~~l~~li~~~~~~~p~~Rp~~~  246 (257)
T cd05116         212 ESGERM-E-CPQR------CPPEMYDLMKLCWTYGVDERPGFA  246 (257)
T ss_pred             HCCCCC-C-CCCC------CCHHHHHHHHHHhccCchhCcCHH
Confidence            654321 1 1111      123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-42  Score=369.81  Aligned_cols=259  Identities=29%  Similarity=0.447  Sum_probs=207.7

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      ++.-...||.|.||.||-|.+.+     ++...|+|-++-.... ......+.+|..+|..++|||+|++||+=.+.+.+
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~-----tGellAvKEI~iq~~~-~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv 1309 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLD-----TGELLAVKEIKIQDSD-HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKV 1309 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCC-----ccchhhhhhhhcCccc-cccCcchHHHHHHHHhccCccccccCceeecHHHH
Confidence            45667889999999999999887     6788899988755433 45566777899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      +|.||||+||+|.+.+++...  .  .+                          ...+.|..|++.||+|||++||||||
T Consensus      1310 ~IFMEyC~~GsLa~ll~~gri--~--dE--------------------------~vt~vyt~qll~gla~LH~~gIVHRD 1359 (1509)
T KOG4645|consen 1310 YIFMEYCEGGSLASLLEHGRI--E--DE--------------------------MVTRVYTKQLLEGLAYLHEHGIVHRD 1359 (1509)
T ss_pred             HHHHHHhccCcHHHHHHhcch--h--hh--------------------------hHHHHHHHHHHHHHHHHHhcCceecC
Confidence            999999999999998876421  1  11                          11256789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.+|.+|++|||.|..+....                                                   
T Consensus      1360 IK~aNI~Ld~~g~iK~~DFGsa~ki~~~~--------------------------------------------------- 1388 (1509)
T KOG4645|consen 1360 IKPANILLDFNGLIKYGDFGSAVKIKNNA--------------------------------------------------- 1388 (1509)
T ss_pred             CCccceeeecCCcEEeecccceeEecCch---------------------------------------------------
Confidence            99999999999999999999986544211                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                             +.........+||+.|||||++.+.   +.+-+.|||||||++.||+||+.||...+
T Consensus      1389 -----------------------~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~d 1445 (1509)
T KOG4645|consen 1389 -----------------------QTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELD 1445 (1509)
T ss_pred             -----------------------hcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhcc
Confidence                                   0011223456899999999999874   46789999999999999999999998765


Q ss_pred             h-HHHHHHHhcCC-CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 N-EKTLINILKKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ~-~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      . ..++.++..+. +.+|..         .+.+.+|||..||+.||++|+++.    |||.|-|-+.
T Consensus      1446 ne~aIMy~V~~gh~Pq~P~~---------ls~~g~dFle~Cl~~dP~~Rw~~~----qlle~~f~~~ 1499 (1509)
T KOG4645|consen 1446 NEWAIMYHVAAGHKPQIPER---------LSSEGRDFLEHCLEQDPKMRWTAS----QLLEHAFGKS 1499 (1509)
T ss_pred             chhHHHhHHhccCCCCCchh---------hhHhHHHHHHHHHhcCchhhhHHH----HHHHhhcccc
Confidence            4 55566655443 333332         122479999999999999999987    9999988653

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-39  Score=313.64  Aligned_cols=254  Identities=28%  Similarity=0.455  Sum_probs=205.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|++|.||++++..     .++.||+|.+...... ......+.+|+.++.+++||||+++++++.+.+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLE-----TGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSL   74 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcC-----CCcEEEEEEecccccC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEE
Confidence            58899999999999999999876     5678999999766432 23456778899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|.+++...  ..++...                            ...++.|++.||.|||++||+|||
T Consensus        75 ~~v~e~~~~~~L~~~~~~~--~~l~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H~d  124 (254)
T cd06627          75 YIILEYAENGSLRQIIKKF--GPFPESL----------------------------VAVYVYQVLQGLAYLHEQGVIHRD  124 (254)
T ss_pred             EEEEecCCCCcHHHHHHhc--cCCCHHH----------------------------HHHHHHHHHHHHHHHhhCCcccCC
Confidence            9999999999999988664  2222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||++.......                                                   
T Consensus       125 l~p~ni~i~~~~~~~l~d~~~~~~~~~~~---------------------------------------------------  153 (254)
T cd06627         125 IKAANILTTKDGVVKLADFGVATKLNDVS---------------------------------------------------  153 (254)
T ss_pred             CCHHHEEECCCCCEEEeccccceecCCCc---------------------------------------------------
Confidence            99999999999999999999984432100                                                   


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                 .......|+..|+|||.+.+..++.++||||||+++|+|++|..||.......
T Consensus       154 ---------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~  206 (254)
T cd06627         154 ---------------------------KDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA  206 (254)
T ss_pred             ---------------------------ccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence                                       00122357889999999988888999999999999999999999998877666


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+.....  +......      ...+.++|.+||..+|++||++.    +++.||||
T Consensus       207 ~~~~~~~~~~--~~~~~~~------~~~~~~~i~~~l~~~p~~R~~~~----~~l~~~~~  254 (254)
T cd06627         207 ALFRIVQDDH--PPLPEGI------SPELKDFLMQCFQKDPNLRPTAK----QLLKHPWI  254 (254)
T ss_pred             HHHHHhccCC--CCCCCCC------CHHHHHHHHHHHhCChhhCcCHH----HHhcCCCC
Confidence            5555543222  1111111      12489999999999999999998    99999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1e-39  Score=315.51  Aligned_cols=248  Identities=24%  Similarity=0.307  Sum_probs=194.0

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|.+....  .....||||.+......  .....+..|+.++++++||||+++++.+.. ...++|||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~--~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e   75 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSG--GKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTE   75 (257)
T ss_pred             CcCCccCcccEEeeeEecCC--CCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEE
Confidence            46899999999999986531  13357999999876543  455677789999999999999999999988 88999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|.+++.......+.+.                            .+..++.|++.||+|||++|++||||||+|
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~----------------------------~~~~~~~qi~~~L~~lH~~~i~H~di~p~n  127 (257)
T cd05040          76 LAPLGSLLDRLRKDALGHFLIS----------------------------TLCDYAVQIANGMRYLESKRFIHRDLAARN  127 (257)
T ss_pred             ecCCCcHHHHHHhcccccCcHH----------------------------HHHHHHHHHHHHHHHHHhCCccccccCccc
Confidence            9999999999876532222222                            123678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      |+++.++.+||+|||+++.+......                                                      
T Consensus       128 il~~~~~~~kl~dfg~~~~~~~~~~~------------------------------------------------------  153 (257)
T cd05040         128 ILLASDDKVKIGDFGLMRALPQNEDH------------------------------------------------------  153 (257)
T ss_pred             EEEecCCEEEeccccccccccccccc------------------------------------------------------
Confidence            99999999999999998543210000                                                      


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+....
T Consensus       154 ---------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~  212 (257)
T cd05040         154 ---------------------YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKK  212 (257)
T ss_pred             ---------------------eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence                                 000112347788999999998889999999999999999998 9999988877777666


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.......+...       ..+..+.+++.+||+.+|++||++.
T Consensus       213 ~~~~~~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~  249 (257)
T cd05040         213 IDKEGERLERPE-------ACPQDIYNVMLQCWAHNPADRPTFA  249 (257)
T ss_pred             HHhcCCcCCCCc-------cCCHHHHHHHHHHCCCCcccCCCHH
Confidence            654322222111       1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.4e-41  Score=357.48  Aligned_cols=275  Identities=28%  Similarity=0.377  Sum_probs=200.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      ..+|+.++.||+||||.||+|+++-     +++.||||.|.-..  ......++.+|+.+|.+|+|||||++|..|... 
T Consensus       478 ~~DFEEL~lLGkGGFG~VvkVRNKl-----DGr~YAIKKIpl~~--s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~  550 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFGSVVKVRNKL-----DGREYAIKKIPLKA--SDKLYSKILREVKLLARLNHPNVVRYYSAWVEST  550 (1351)
T ss_pred             hhhhHHHHHhcCCCCceEEEEeecc-----cchhhhhhhccCch--HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccC
Confidence            4679999999999999999999885     88999999998765  356677888899999999999999998766110 


Q ss_pred             --------------------------------------------------------------------------------
Q 010140          162 --------------------------------------------------------------------------------  161 (517)
Q Consensus       162 --------------------------------------------------------------------------------  161 (517)
                                                                                                      
T Consensus       551 ~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~  630 (1351)
T KOG1035|consen  551 AELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNL  630 (1351)
T ss_pred             CccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhh
Q 010140          162 --------------------------------------HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF  203 (517)
Q Consensus       162 --------------------------------------~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~  203 (517)
                                                            ..+||-||||+..+|.+++.+.....    ...         
T Consensus       631 S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~----~~d---------  697 (1351)
T KOG1035|consen  631 SNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS----QRD---------  697 (1351)
T ss_pred             ccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch----hhH---------
Confidence                                                  01578888888877777776653221    111         


Q ss_pred             hhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHH
Q 010140          204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFE  283 (517)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~  283 (517)
                                      .+.++.+||+.||+|+|++|||||||||.||+++.++.|||+|||+|...........      
T Consensus       698 ----------------~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d------  755 (1351)
T KOG1035|consen  698 ----------------EAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESID------  755 (1351)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHh------
Confidence                            1125679999999999999999999999999999999999999999843110000000      


Q ss_pred             HHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCc
Q 010140          284 AIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEY  363 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y  363 (517)
                                                                   ...         ..............++.+||.-|
T Consensus       756 ---------------------------------------------~~~---------~~~~~~~g~~~~~~Ts~VGTalY  781 (1351)
T KOG1035|consen  756 ---------------------------------------------QDL---------SFSTNRAGSNDGDLTSQVGTALY  781 (1351)
T ss_pred             ---------------------------------------------hcc---------CccccccCCCCcccccccceeee
Confidence                                                         000         00000111112245677999999


Q ss_pred             ccchhhcCCC---CCccchHHHHHHHHHHHhhCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHH
Q 010140          364 LAPEVISGQG---HGSAVDWWTLGVFLYEMLYGTTPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISK  439 (517)
Q Consensus       364 ~APE~l~~~~---~~~~~DiWSlGvil~elltG~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~  439 (517)
                      +|||++.+..   |+.|+||||||||+|||+.   ||...-+ ...+..+.++..+.+. ....    +..+.-..+|++
T Consensus       782 vAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~-~f~~----~~~~~e~slI~~  853 (1351)
T KOG1035|consen  782 VAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPA-DFFD----PEHPEEASLIRW  853 (1351)
T ss_pred             ecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCc-cccc----ccchHHHHHHHH
Confidence            9999998765   9999999999999999985   5765433 3344555555544441 1111    112235799999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCcC
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ||+.||.+||||.    |+|++.||-
T Consensus       854 Ll~hdP~kRPtA~----eLL~s~llp  875 (1351)
T KOG1035|consen  854 LLSHDPSKRPTAT----ELLNSELLP  875 (1351)
T ss_pred             HhcCCCccCCCHH----HHhhccCCC
Confidence            9999999999998    999999986

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=9.9e-40  Score=315.64  Aligned_cols=252  Identities=25%  Similarity=0.323  Sum_probs=199.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|.+....  ..+..||+|++.......  ....+..|+.+++.++|+||+++++++......++|||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~--~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   76 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKD--GKTTEVAVKTLKEDASEE--ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLE   76 (262)
T ss_pred             CccccCCceEEEEEEEecCC--CCCceEEeEeeccccchh--HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEE
Confidence            46999999999999987521  136789999998664332  45677789999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCC-------CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          170 YCPGGDLYAARQRQPG-------KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      |+++++|.+++.....       ..+++                            ..+..++.||+.||+|||++||+|
T Consensus        77 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~l~~al~~lH~~~i~H  128 (262)
T cd00192          77 YMEGGDLLDYLRKSRPVFPSPEKSTLSL----------------------------KDLLSFAIQIAKGMEYLASKKFVH  128 (262)
T ss_pred             eccCCcHHHHHhhccccccccccccCCH----------------------------HHHHHHHHHHHHHHHHHHcCCccc
Confidence            9999999999876421       22222                            223478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.+||+|||.+........                                                
T Consensus       129 ~di~p~nili~~~~~~~l~dfg~~~~~~~~~~------------------------------------------------  160 (262)
T cd00192         129 RDLAARNCLVGEDLVVKISDFGLSRDVYDDDY------------------------------------------------  160 (262)
T ss_pred             CccCcceEEECCCCcEEEcccccccccccccc------------------------------------------------
Confidence            99999999999999999999999854331100                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........+++.|+|||.+.+..++.++|||||||++|+|++ |..||....
T Consensus       161 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  212 (262)
T cd00192         161 ----------------------------YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS  212 (262)
T ss_pred             ----------------------------cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC
Confidence                                        001123357889999999998889999999999999999999 699999988


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+....+...... +. ...      .+.++.++|.+||..||.+||++.    |+++|
T Consensus       213 ~~~~~~~~~~~~~~-~~-~~~------~~~~~~~li~~~l~~~p~~Rps~~----~l~~~  260 (262)
T cd00192         213 NEEVLEYLRKGYRL-PK-PEY------CPDELYELMLSCWQLDPEDRPTFS----ELVER  260 (262)
T ss_pred             HHHHHHHHHcCCCC-CC-Ccc------CChHHHHHHHHHccCCcccCcCHH----HHHHh
Confidence            77777777653211 11 111      123589999999999999999997    87765

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.1e-39  Score=317.57  Aligned_cols=252  Identities=19%  Similarity=0.266  Sum_probs=184.3

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      ++||+|+||.||+|.....   .....+|+|.+.....  ......+.+|+.+++.++||||+++++.+.....+|+|||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~---~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e   75 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRG---MSKARVVVKELRASAT--PDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLE   75 (269)
T ss_pred             CcCCccCCceEEEEEEecC---CCCeEEEEeecCccCC--hHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEE
Confidence            3699999999999976542   2456789998764321  2233456679999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|.+++...........                         ....++.++.||+.||+|||++||+||||||+|
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~-------------------------~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~N  130 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMA-------------------------QKDVLQRMACEVASGLLWLHQADFIHSDLALRN  130 (269)
T ss_pred             eCCCCcHHHHHHhccccccccc-------------------------cHHHHHHHHHHHHHHHHHHHhcCEecccccHhh
Confidence            9999999999876532111100                         011224678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||++........                                                       
T Consensus       131 ill~~~~~~kl~dfg~~~~~~~~~~-------------------------------------------------------  155 (269)
T cd05042         131 CQLTADLSVKIGDYGLALEQYPEDY-------------------------------------------------------  155 (269)
T ss_pred             eEecCCCcEEEeccccccccccchh-------------------------------------------------------
Confidence            9999999999999998732210000                                                       


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-------CCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-------QGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-------~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                           ........+++.|+|||++..       ..++.++|||||||++|||++ |..||....
T Consensus       156 ---------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~  214 (269)
T cd05042         156 ---------------------YITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS  214 (269)
T ss_pred             ---------------------eeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC
Confidence                                 000112246778999999753       346889999999999999998 889998877


Q ss_pred             hHHHHHHHhcCC-CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.+.+..+.... ...+......    .....+.+++..|| .||++||++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~dp~~Rpt~~  261 (269)
T cd05042         215 DEQVLKQVVREQDIKLPKPQLDL----KYSDRWYEVMQFCW-LDPETRPTAE  261 (269)
T ss_pred             HHHHHHHHhhccCccCCCCcccc----cCCHHHHHHHHHHh-cCcccccCHH
Confidence            766666554432 2222211110    12234788999998 5999999996

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.9e-39  Score=312.97  Aligned_cols=257  Identities=30%  Similarity=0.444  Sum_probs=203.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--c
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--H  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  162 (517)
                      +|.+.+.||+|++|.||+|.+..     +++.|++|++...... ......+.+|+.++++++||||+++++.+...  .
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKD-----TGELMAVKSVELSGDS-EEELEALEREIRILSSLQHPNIVRYYGSERDEEKN   74 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECC-----CCcEEEEEEeeccccc-hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCC
Confidence            48899999999999999999886     5788999998765432 34456777899999999999999999999988  8


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..++||||+++++|.+++....  .+.....                            ..++.|++.||+|||++|++|
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~----------------------------~~~~~~l~~~l~~lh~~~~~h  124 (260)
T cd06606          75 TLNIFLEYVSGGSLSSLLKKFG--KLPEPVI----------------------------RKYTRQILEGLAYLHSNGIVH  124 (260)
T ss_pred             eEEEEEEecCCCcHHHHHHHcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999999987643  2222222                            367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||+|+||+++.++.++|+|||.+.........                                               
T Consensus       125 ~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-----------------------------------------------  157 (260)
T cd06606         125 RDIKGANILVDSDGVVKLADFGCAKRLGDIETG-----------------------------------------------  157 (260)
T ss_pred             cCCCHHHEEEcCCCCEEEcccccEEeccccccc-----------------------------------------------
Confidence            999999999999999999999987433211000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   .......++..|+|||.+.+...+.++||||||+++|+|++|..||.....
T Consensus       158 -----------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  208 (260)
T cd06606         158 -----------------------------EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN  208 (260)
T ss_pred             -----------------------------ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence                                         001233588899999999988899999999999999999999999987762


Q ss_pred             -HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 -EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 -~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                       ......+... ...+......      ...+.+||.+||+.||.+||++.    ++++||||
T Consensus       209 ~~~~~~~~~~~-~~~~~~~~~~------~~~l~~~i~~~l~~~p~~Rp~~~----~ll~~~~~  260 (260)
T cd06606         209 PMAALYKIGSS-GEPPEIPEHL------SEEAKDFLRKCLRRDPKKRPTAD----ELLQHPFL  260 (260)
T ss_pred             hHHHHHhcccc-CCCcCCCccc------CHHHHHHHHHhCcCChhhCCCHH----HHhhCCCC
Confidence             3333333321 1111111111      23589999999999999999998    99999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-40  Score=323.32  Aligned_cols=268  Identities=21%  Similarity=0.247  Sum_probs=195.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCC---------CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcc
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMV---------GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~---------~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv  152 (517)
                      ..++|++.++||+|+||.||+|++.+...         ......||+|.+.....  ......+.+|++++++++||||+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~ei~~l~~l~h~~i~   80 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT--KTARNDFLKEIKIMSRLKNPNII   80 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC--HHHHHHHHHHHHHHHhCCCCCcC
Confidence            34689999999999999999998764210         11234689999875421  23345677899999999999999


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCc-cCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR-FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      ++++++......|+||||+++++|.+++....... +....                   .........+..++.||+.|
T Consensus        81 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~i~~a  141 (295)
T cd05097          81 RLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHAN-------------------NIPSVSIANLLYMAVQIASG  141 (295)
T ss_pred             eEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccc-------------------cCCcccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886532100 00000                   00001122334688999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      |+|||++|++||||||+|||++.++.+||+|||++........                                     
T Consensus       142 l~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~-------------------------------------  184 (295)
T cd05097         142 MKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDY-------------------------------------  184 (295)
T ss_pred             HHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcc-------------------------------------
Confidence            9999999999999999999999999999999999843211000                                     


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHh
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ell  391 (517)
                                                             ........++..|+|||++.+..++.++|||||||++|+|+
T Consensus       185 ---------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~  225 (295)
T cd05097         185 ---------------------------------------YRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMF  225 (295)
T ss_pred             ---------------------------------------eeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHH
Confidence                                                   00011234577899999999888999999999999999998


Q ss_pred             h--CCCCCCCCChHHHHHHHhc-----CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          392 Y--GTTPFKGENNEKTLINILK-----KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       392 t--G~~Pf~~~~~~~~~~~i~~-----~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +  |..||...+..+....+..     ....+......      .+..+.+||.+||+.||++||++.
T Consensus       226 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~li~~~l~~~p~~RPs~~  287 (295)
T cd05097         226 TLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPL------CPSPVFKLMMRCWSRDIKDRPTFN  287 (295)
T ss_pred             HcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCC------CCHHHHHHHHHHcCCCchhCcCHH
Confidence            8  7789988776665544432     11111111111      123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3.3e-40  Score=326.80  Aligned_cols=267  Identities=25%  Similarity=0.332  Sum_probs=198.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|.++.     +++.||+|+++..... ......+..|+.+++.++||||+++++++.+
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~v~iK~~~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~   77 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKD-----TGELVALKKVRLDNEK-EGFPITAIREIKILRQLNHRNIVNLKEIVTD   77 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECC-----CCcEEEEEEEeecccc-cCchHHHHHHHHHHHhCCCCCeeeeeheecC
Confidence            456789999999999999999999986     5678999998654211 1222345569999999999999999999876


Q ss_pred             Cc----------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          161 SH----------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       161 ~~----------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                      ..          .+|+||||+++ +|..++.... ..+...                            .++.++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~  127 (302)
T cd07864          78 KQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGL-VHFSED----------------------------HIKSFMKQLLE  127 (302)
T ss_pred             cchhhhccccCCcEEEEEcccCc-cHHHHHhcCC-CCCCHH----------------------------HHHHHHHHHHH
Confidence            54          79999999965 7777665431 122222                            23478899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ||+|||++||+||||||+||+++.++.+||+|||++........                                    
T Consensus       128 aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~------------------------------------  171 (302)
T cd07864         128 GLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES------------------------------------  171 (302)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcc------------------------------------
Confidence            99999999999999999999999999999999999843221000                                    


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~e  389 (517)
                                                               .......++..|+|||.+.+. .++.++|||||||++|+
T Consensus       172 -----------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~e  210 (302)
T cd07864         172 -----------------------------------------RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGE  210 (302)
T ss_pred             -----------------------------------------cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHH
Confidence                                                     001112467789999998754 47899999999999999


Q ss_pred             HhhCCCCCCCCChHHHHHHHhcC---CC--CCCCCCCC--------------C-chhH-HhhhhHHHHHHHhccCCcccc
Q 010140          390 MLYGTTPFKGENNEKTLINILKK---PL--TFPRIGVS--------------S-SKEF-EEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       390 lltG~~Pf~~~~~~~~~~~i~~~---~~--~~p~~~~~--------------~-~~~~-~~~~~l~dLi~~~L~~dP~~R  448 (517)
                      |++|++||...+..+.+..+...   ..  .+|.....              . ...+ ..+..+.+||.+||..||.+|
T Consensus       211 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  290 (302)
T cd07864         211 LFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKR  290 (302)
T ss_pred             HHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhC
Confidence            99999999887766555444331   11  01100000              0 0000 123468999999999999999


Q ss_pred             cCCCCChHHhhcCCCc
Q 010140          449 IGSLKGSVEIKRHEFF  464 (517)
Q Consensus       449 ~t~~~~~~ell~hp~f  464 (517)
                      |++.    +++.||||
T Consensus       291 p~~~----~il~~~~~  302 (302)
T cd07864         291 CTAE----EALNSPWL  302 (302)
T ss_pred             CCHH----HHhcCCCC
Confidence            9998    99999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=7e-40  Score=326.95  Aligned_cols=255  Identities=27%  Similarity=0.362  Sum_probs=201.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|...+.||+|+||.||+|++..     ++..||+|++.............+..|+.+++.++||||+++++++..+..
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~-----~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   99 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVR-----TNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHT   99 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcC-----CCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCe
Confidence            458899999999999999999876     568899999865432223445567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++ |+|.+++.... ..+...                            .+..++.||+.||.|||++||+||
T Consensus       100 ~~lv~e~~~-g~l~~~~~~~~-~~l~~~----------------------------~~~~i~~~i~~~l~~lH~~~i~H~  149 (317)
T cd06635         100 AWLVMEYCL-GSASDLLEVHK-KPLQEV----------------------------EIAAITHGALQGLAYLHSHNMIHR  149 (317)
T ss_pred             EEEEEeCCC-CCHHHHHHHhc-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCcccC
Confidence            999999996 57777665432 122222                            223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+|+||+++.++.+||+|||++....                                                     
T Consensus       150 dL~p~Nil~~~~~~~kl~dfg~~~~~~-----------------------------------------------------  176 (317)
T cd06635         150 DIKAGNILLTEPGQVKLADFGSASIAS-----------------------------------------------------  176 (317)
T ss_pred             CCCcccEEECCCCCEEEecCCCccccC-----------------------------------------------------
Confidence            999999999999999999999873211                                                     


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                   ......|++.|+|||++.   ...++.++|||||||++|+|++|..||...
T Consensus       177 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         177 -----------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             -----------------------------CcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                                         011235888999999984   345789999999999999999999999887


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ........+...........       .....+++||.+||+.+|.+||++.    ++++|+|+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~li~~~l~~~p~~Rpt~~----~il~~~~~~~  282 (317)
T cd06635         228 NAMSALYHIAQNESPTLQSN-------EWSDYFRNFVDSCLQKIPQDRPTSE----ELLKHMFVLR  282 (317)
T ss_pred             cHHHHHHHHHhccCCCCCCc-------cccHHHHHHHHHHccCCcccCcCHH----HHHhChhhhc
Confidence            77666666655433221111       1122489999999999999999998    9999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.3e-40  Score=332.00  Aligned_cols=262  Identities=29%  Similarity=0.402  Sum_probs=197.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|.+.+.||+|+||.||+|++..     +++.||||++.+.... ......+.+|+.+++.++||||+++++++...  
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~   88 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKR-----TGEKVAIKKLSRPFQS-EIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVS   88 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCC-----CCcEEEEEEecCcccc-ccchhHHHHHHHHHHhcCCCCccchhheeccccc
Confidence            689999999999999999999876     6788999998753211 12234566799999999999999999998654  


Q ss_pred             ----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 ----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                          ...|+||||+. .+|..++.    ..++....                            +.++.||+.||+|||+
T Consensus        89 ~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~----------------------------~~~~~qi~~aL~~LH~  135 (342)
T cd07879          89 GDEFQDFYLVMPYMQ-TDLQKIMG----HPLSEDKV----------------------------QYLVYQMLCGLKYIHS  135 (342)
T ss_pred             CCCCceEEEEecccc-cCHHHHHc----CCCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                34699999995 47765542    12332222                            3678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++....                                              
T Consensus       136 ~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~----------------------------------------------  169 (342)
T cd07879         136 AGIIHRDLKPGNLAVNEDCELKILDFGLARHADA----------------------------------------------  169 (342)
T ss_pred             CCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCC----------------------------------------------
Confidence            9999999999999999999999999999732110                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         ......|++.|+|||++.+ ..++.++|||||||++|||++|+.|
T Consensus       170 -----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~p  214 (342)
T cd07879         170 -----------------------------------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTL  214 (342)
T ss_pred             -----------------------------------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCC
Confidence                                               0112357889999999876 4588999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCC-C-------------------CCCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          397 FKGENNEKTLINILKKPL-T-------------------FPRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~-~-------------------~p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      |.+.+....+..+..... .                   .+.........  .....++.+||.+||+.||++||++.  
T Consensus       215 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~--  292 (342)
T cd07879         215 FKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTAT--  292 (342)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHH--
Confidence            998776555544433110 0                   00000000000  01223588999999999999999998  


Q ss_pred             hHHhhcCCCcCCCCc
Q 010140          455 SVEIKRHEFFKGINW  469 (517)
Q Consensus       455 ~~ell~hp~f~~~~~  469 (517)
                        +++.||||+++.+
T Consensus       293 --e~l~h~~f~~~~~  305 (342)
T cd07879         293 --EALEHPYFDSFRD  305 (342)
T ss_pred             --HHhcCcchhhccc
Confidence              9999999998765

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.4e-39  Score=316.71  Aligned_cols=256  Identities=20%  Similarity=0.244  Sum_probs=197.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|+..+.||+|+||.||+|+......  ....+|+|.+.....  ......+..|+.+++.++||||+++++++..
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~--~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   77 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPGR--KEVAVAIKTLKPGYT--EKQRQDFLSEASIMGQFSHHNIIRLEGVVTK   77 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCCC--CceEEEEEeccccCC--HHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc
Confidence            345689999999999999999999875311  235799999865421  1234556779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++++|.+++.... ..+....                            ...++.|++.||+|||++||
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~~~~~l~~al~~lH~~~i  128 (268)
T cd05063          78 FKPAMIITEYMENGALDKYLRDHD-GEFSSYQ----------------------------LVGMLRGIAAGMKYLSDMNY  128 (268)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999999886532 2222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+||+++.++.+||+|||++.........                                             
T Consensus       129 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~---------------------------------------------  163 (268)
T cd05063         129 VHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG---------------------------------------------  163 (268)
T ss_pred             eccccchhhEEEcCCCcEEECCCccceeccccccc---------------------------------------------
Confidence            99999999999999999999999997433210000                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    .........+..|+|||++.+..++.++|||||||++|||++ |..||..
T Consensus       164 ------------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~  213 (268)
T cd05063         164 ------------------------------TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWD  213 (268)
T ss_pred             ------------------------------ceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCc
Confidence                                          000011123567999999998889999999999999999997 9999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+..+....+.... ..|... .      ....+.+|+.+||..+|++||++.
T Consensus       214 ~~~~~~~~~i~~~~-~~~~~~-~------~~~~~~~li~~c~~~~p~~Rp~~~  258 (268)
T cd05063         214 MSNHEVMKAINDGF-RLPAPM-D------CPSAVYQLMLQCWQQDRARRPRFV  258 (268)
T ss_pred             CCHHHHHHHHhcCC-CCCCCC-C------CCHHHHHHHHHHcCCCcccCcCHH
Confidence            87777766665432 222211 1      123489999999999999999997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.9e-40  Score=332.40  Aligned_cols=262  Identities=28%  Similarity=0.383  Sum_probs=202.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|++..     +++.||||++...... ......+.+|+.+++.++||||+++++++....
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~-----~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   87 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTK-----TGRKVAIKKLSRPFQS-AIHAKRTYRELRLLKHMDHENVIGLLDVFTPAS   87 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECC-----CCcEEEEEecccccch-hhHHHHHHHHHHHHHhccCCCHHHHHHHhhccc
Confidence            4689999999999999999999986     6788999998654222 223455667999999999999999999887655


Q ss_pred             e------eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 Y------SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ~------~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .      +|+|+||+ +++|.+++..   ..+++..+                            +.++.||+.||+|||
T Consensus        88 ~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~----------------------------~~~~~ql~~aL~~LH  135 (343)
T cd07851          88 SLEDFQDVYLVTHLM-GADLNNIVKC---QKLSDDHI----------------------------QFLVYQILRGLKYIH  135 (343)
T ss_pred             cccccccEEEEEecC-CCCHHHHHhc---CCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            4      89999999 7799888764   22333322                            367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+||+++.++.++|+|||++.....                                             
T Consensus       136 ~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~---------------------------------------------  170 (343)
T cd07851         136 SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD---------------------------------------------  170 (343)
T ss_pred             HCCeecCCCCHHHeEECCCCCEEEccccccccccc---------------------------------------------
Confidence            99999999999999999999999999999833210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          ......++..|+|||.+.+. .++.++|||||||++|+|++|+.
T Consensus       171 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~  214 (343)
T cd07851         171 ------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKT  214 (343)
T ss_pred             ------------------------------------cccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCC
Confidence                                                01233578899999998764 57899999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCC--------------------CCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPR--------------------IGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~--------------------~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+....+..+.......+.                    ........  .....++.+||.+||+.||++|||+. 
T Consensus       215 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~-  293 (343)
T cd07851         215 LFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAA-  293 (343)
T ss_pred             CCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHH-
Confidence            99988776666555442111110                    00000000  01234689999999999999999998 


Q ss_pred             ChHHhhcCCCcCCC
Q 010140          454 GSVEIKRHEFFKGI  467 (517)
Q Consensus       454 ~~~ell~hp~f~~~  467 (517)
                         ||++||||+..
T Consensus       294 ---ell~h~~~~~~  304 (343)
T cd07851         294 ---EALAHPYLAEY  304 (343)
T ss_pred             ---HHhcCCCcccc
Confidence               99999999853

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=1.1e-39  Score=314.79  Aligned_cols=256  Identities=30%  Similarity=0.417  Sum_probs=205.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +|++.+.||+|+||.||+++++.     +++.+|+|.+....... .....+..|+.+++.++||||+++++++......
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLS-----DNQFYALKEVDLGSMSQ-KEREDAVNEIRILASVNHPNIISYKEAFLDGNKL   74 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECC-----CCCEEEEEEEehhhccH-HHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEE
Confidence            58999999999999999998876     67889999987654332 3345566799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++++|.+++.............                          .+..++.||+.||+|||++|++|||
T Consensus        75 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~al~~lh~~~i~h~~  128 (256)
T cd08530          75 CIVMEYAPFGDLSKAISKRKKKRKLIPEQ--------------------------EIWRIFIQLLRGLQALHEQKILHRD  128 (256)
T ss_pred             EEEehhcCCCCHHHHHHHHHhhcCCCCHH--------------------------HHHHHHHHHHHHHHHHhhCCcccCC
Confidence            99999999999999886632211111111                          1236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |+|+||+++.++.+||+|||+++.....                                                    
T Consensus       129 l~~~ni~~~~~~~~kl~d~g~~~~~~~~----------------------------------------------------  156 (256)
T cd08530         129 LKSANILLVANDLVKIGDLGISKVLKKN----------------------------------------------------  156 (256)
T ss_pred             CCcceEEEecCCcEEEeeccchhhhccC----------------------------------------------------
Confidence            9999999999999999999997432210                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                  ......|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...+..+
T Consensus       157 ----------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~  208 (256)
T cd08530         157 ----------------------------MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD  208 (256)
T ss_pred             ----------------------------CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                        0112247889999999998889999999999999999999999999888776


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ....+......  ....      ....+++++|.+||..+|++||++.    ++++||++
T Consensus       209 ~~~~~~~~~~~--~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~----~~l~~p~~  256 (256)
T cd08530         209 LRYKVQRGKYP--PIPP------IYSQDLQNFIRSMLQVKPKLRPNCD----KILASPAV  256 (256)
T ss_pred             HHHHHhcCCCC--CCch------hhCHHHHHHHHHHcCCCcccCCCHH----HHhcCCCC
Confidence            66665544322  1111      1223589999999999999999998    99999984

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.2e-39  Score=322.09  Aligned_cols=262  Identities=24%  Similarity=0.324  Sum_probs=197.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ..+..++|++.+.||+|+||.||+|++..     +++.||||.+.+....  .....+..|+.++.++ .||||++++++
T Consensus        10 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~-----~~~~~avK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~i~~~~~~   82 (296)
T cd06618          10 YPADLNDLENLGEIGSGTCGQVYKMRFKK-----TGHVMAVKQMRRTGNK--EENKRILMDLDVVLKSHDCPYIVKCYGY   82 (296)
T ss_pred             ccCCcchheeeeEeeccCCeEEEEEEECC-----CCeEEEEEEEeccCCh--HHHHHHHHHHHHHHhccCCCchHhhhee
Confidence            35667899999999999999999999886     5788999998754221  2233444566666666 59999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +......|+||||+ +++|..++.... ..++...                            +..++.||+.||+|||+
T Consensus        83 ~~~~~~~~~v~e~~-~~~l~~l~~~~~-~~l~~~~----------------------------~~~i~~~i~~~l~~lH~  132 (296)
T cd06618          83 FITDSDVFICMELM-STCLDKLLKRIQ-GPIPEDI----------------------------LGKMTVAIVKALHYLKE  132 (296)
T ss_pred             eecCCeEEEEeecc-CcCHHHHHHHhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            99999999999999 557777665532 1222221                            23678999999999997


Q ss_pred             -cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 -MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 -~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                       .||+||||+|+||+++.++.+||+|||++..+....                                           
T Consensus       133 ~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~-------------------------------------------  169 (296)
T cd06618         133 KHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK-------------------------------------------  169 (296)
T ss_pred             hCCEecCCCcHHHEEEcCCCCEEECccccchhccCCC-------------------------------------------
Confidence             599999999999999999999999999874321100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----CCccchHHHHHHHHHHHhh
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----~~~~~DiWSlGvil~ellt  392 (517)
                                                          ......|+..|+|||.+.+..    ++.++|||||||++|+|++
T Consensus       170 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~  213 (296)
T cd06618         170 ------------------------------------AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELAT  213 (296)
T ss_pred             ------------------------------------cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHh
Confidence                                                001124788899999997654    7889999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |+.||..... .+.+..+............      ....++.+||.+||..||.+||++.    ++++||||..
T Consensus       214 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~~p~~Rp~~~----~il~~~~~~~  278 (296)
T cd06618         214 GQFPYKNCKTEFEVLTKILQEEPPSLPPNE------GFSPDFCSFVDLCLTKDHRKRPKYR----ELLQHPFIRR  278 (296)
T ss_pred             CCCCCCcchhHHHHHHHHhcCCCCCCCCCC------CCCHHHHHHHHHHccCChhhCCCHH----HHhcChhhhc
Confidence            9999976433 3445555544322111111      1123589999999999999999998    9999999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=4.5e-40  Score=318.59  Aligned_cols=258  Identities=28%  Similarity=0.458  Sum_probs=196.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--HHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--IRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +|.+.+.||+|+||.||++++..     .+..+++|+++.....  ......++..|+.+++.++||||+++++++.+..
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKK-----AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecC-----CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence            58999999999999999999876     2334555554432110  0122334556899999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|..++...........+.                          ..+.++.|++.||.|||++|++|
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~~l~~lH~~~i~h  129 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEELKHTGKTLSEN--------------------------QVCEWFIQLLLGVHYMHQRRILH  129 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHhhcccccCHH--------------------------HHHHHHHHHHHHHHHHHHcCccc
Confidence            9999999999999998886532111111111                          22367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +||||+||+++. +.++|+|||+++......                                                 
T Consensus       130 ~~l~~~nili~~-~~~~l~d~g~~~~~~~~~-------------------------------------------------  159 (260)
T cd08222         130 RDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC-------------------------------------------------  159 (260)
T ss_pred             cCCChhheEeec-CCEeecccCceeecCCCc-------------------------------------------------
Confidence            999999999975 679999999874321100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   .......|++.|+|||.+.+..++.++|+||||+++|+|++|..||.....
T Consensus       160 -----------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~  210 (260)
T cd08222         160 -----------------------------DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF  210 (260)
T ss_pred             -----------------------------ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                                         011223578899999999888889999999999999999999999988777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ......+.......  ...      ....++.++|.+||..||++||++.    |+++||||
T Consensus       211 ~~~~~~~~~~~~~~--~~~------~~~~~~~~li~~~l~~~p~~Rp~~~----~il~~~~~  260 (260)
T cd08222         211 LSVVLRIVEGPTPS--LPE------TYSRQLNSIMQSMLNKDPSLRPSAA----EILRNPFI  260 (260)
T ss_pred             HHHHHHHHcCCCCC--Ccc------hhcHHHHHHHHHHhcCChhhCcCHH----HHhhCCCC
Confidence            66666665543221  111      1123589999999999999999998    99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.5e-39  Score=316.65  Aligned_cols=260  Identities=22%  Similarity=0.264  Sum_probs=198.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++....  ....||||++.....  ......+..|+.+++.++||||+++++++.++.
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~--~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   78 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGK--REIFVAIKTLKSGYT--EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR   78 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCC--CceeEEEEEcCCCCC--HHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC
Confidence            4679999999999999999999876322  235799999875421  233456778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..++||||+++|+|.+++.... ..+....                            ++.++.|++.||.|||++|++|
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~~l~~al~~lH~~g~~H  129 (269)
T cd05065          79 PVMIITEFMENGALDSFLRQND-GQFTVIQ----------------------------LVGMLRGIAAGMKYLSEMNYVH  129 (269)
T ss_pred             ceEEEEecCCCCcHHHHHhhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEee
Confidence            9999999999999999886542 2222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.+||+|||++..........                                              
T Consensus       130 ~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~----------------------------------------------  163 (269)
T cd05065         130 RDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP----------------------------------------------  163 (269)
T ss_pred             cccChheEEEcCCCcEEECCCccccccccCcccc----------------------------------------------
Confidence            9999999999999999999999874332100000                                              


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                 .........++..|+|||.+.+..++.++|||||||++|||++ |..||....
T Consensus       164 ---------------------------~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~  216 (269)
T cd05065         164 ---------------------------TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS  216 (269)
T ss_pred             ---------------------------ccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC
Confidence                                       0000001113457999999998889999999999999999886 999998887


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+....+... ...+...       ..+..+.+++.+||..+|.+||++.    +++.
T Consensus       217 ~~~~~~~i~~~-~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rp~~~----~i~~  263 (269)
T cd05065         217 NQDVINAIEQD-YRLPPPM-------DCPTALHQLMLDCWQKDRNARPKFG----QIVS  263 (269)
T ss_pred             HHHHHHHHHcC-CcCCCcc-------cCCHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            77766666443 2222111       1123589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=7.8e-40  Score=321.25  Aligned_cols=262  Identities=29%  Similarity=0.419  Sum_probs=199.1

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--ce
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--HY  163 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~  163 (517)
                      |++.+.||+|+||.||+|++..     +++.+|+|++.... ........+.+|+.+++.++||||+++++++...  +.
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~-----~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   74 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKK-----TGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGS   74 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECC-----CCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCc
Confidence            6889999999999999999886     57889999997653 1122334566799999999999999999999887  89


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++ ++|..++.... ..+.+..                            ++.++.||+.||+|||++|++|+
T Consensus        75 ~~lv~e~~~-~~l~~~~~~~~-~~~~~~~----------------------------~~~i~~~i~~al~~LH~~~~~h~  124 (287)
T cd07840          75 IYMVFEYMD-HDLTGLLDSPE-VKFTESQ----------------------------IKCYMKQLLEGLQYLHSNGILHR  124 (287)
T ss_pred             EEEEecccc-ccHHHHHhccC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCceec
Confidence            999999996 58888776532 1222222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.+||+|||++........                                                 
T Consensus       125 dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~-------------------------------------------------  155 (287)
T cd07840         125 DIKGSNILINNDGVLKLADFGLARPYTKRNS-------------------------------------------------  155 (287)
T ss_pred             cCcHHHeEEcCCCCEEEccccceeeccCCCc-------------------------------------------------
Confidence            9999999999999999999999843321000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .......++..|+|||.+.+. .++.++|||||||++|||++|+.||...+.
T Consensus       156 ----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~  207 (287)
T cd07840         156 ----------------------------ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE  207 (287)
T ss_pred             ----------------------------ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence                                        001122467889999988764 478999999999999999999999998877


Q ss_pred             HHHHHHHhcCCCC-----CCCCCC-----------CCc----hhHH--hhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          403 EKTLINILKKPLT-----FPRIGV-----------SSS----KEFE--EVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       403 ~~~~~~i~~~~~~-----~p~~~~-----------~~~----~~~~--~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ...+..+......     ++....           ...    ..+.  .+..+.++|.+||..||.+||++.    +++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~----~~l~  283 (287)
T cd07840         208 LEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISAD----QALQ  283 (287)
T ss_pred             HHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHH----HHhh
Confidence            6665555432110     000000           000    0001  144688999999999999999998    9999


Q ss_pred             CCCc
Q 010140          461 HEFF  464 (517)
Q Consensus       461 hp~f  464 (517)
                      ||||
T Consensus       284 ~~~~  287 (287)
T cd07840         284 HEYF  287 (287)
T ss_pred             CcCC
Confidence            9997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-39  Score=313.75  Aligned_cols=245  Identities=22%  Similarity=0.281  Sum_probs=188.7

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      ++||+|+||.||+|+......  ....||+|.+......  .....+..|+.+++.++||||+++++++. ....++|||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~--~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e   75 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSG--KEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVME   75 (257)
T ss_pred             CccCccCceeEEEeEeeccCC--CcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEE
Confidence            479999999999998766321  3378999999866443  34456777999999999999999999876 456899999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++|+|.+++....  .+....                            +..++.|++.||+|||++|++||||||+|
T Consensus        76 ~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lh~~~i~H~di~p~n  125 (257)
T cd05060          76 LAPLGPLLKYLKKRR--EIPVSD----------------------------LKELAHQVAMGMAYLESKHFVHRDLAARN  125 (257)
T ss_pred             eCCCCcHHHHHHhCC--CCCHHH----------------------------HHHHHHHHHHHHHHHhhcCeeccCcccce
Confidence            999999999987643  222222                            23678999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.+......                                                      
T Consensus       126 ili~~~~~~kl~df~~~~~~~~~~~~------------------------------------------------------  151 (257)
T cd05060         126 VLLVNRHQAKISDFGMSRALGAGSDY------------------------------------------------------  151 (257)
T ss_pred             EEEcCCCcEEeccccccceeecCCcc------------------------------------------------------
Confidence            99999999999999998543210000                                                      


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+....
T Consensus       152 ---------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~  210 (257)
T cd05060         152 ---------------------YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAM  210 (257)
T ss_pred             ---------------------cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence                                 000011124568999999998889999999999999999998 9999988877666666


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +...... +...       .....+++||.+||..||++||++.
T Consensus       211 ~~~~~~~-~~~~-------~~~~~l~~li~~cl~~~p~~Rp~~~  246 (257)
T cd05060         211 LESGERL-PRPE-------ECPQEIYSIMLSCWKYRPEDRPTFS  246 (257)
T ss_pred             HHcCCcC-CCCC-------CCCHHHHHHHHHHhcCChhhCcCHH
Confidence            5544321 1111       1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.2e-39  Score=313.52  Aligned_cols=244  Identities=23%  Similarity=0.250  Sum_probs=186.5

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEe
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEY  170 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~  170 (517)
                      .||+|+||.||+|.++...   .+..||+|++.....  ......+.+|+.++++++||||+++++++.. ...|+||||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~---~~~~vavk~~~~~~~--~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~   75 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRK---KQIDVAIKVLKNENE--KSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEM   75 (257)
T ss_pred             ccCCCCcccEEEEEEecCC---CceeEEEEEcccccC--hHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEe
Confidence            4899999999999876421   345699999875422  2334567789999999999999999998864 578999999


Q ss_pred             cCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCce
Q 010140          171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV  250 (517)
Q Consensus       171 ~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NI  250 (517)
                      +++|+|.+++.... ..+++..                            +..++.||+.||+|||++|++||||||+||
T Consensus        76 ~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H~dlkp~ni  126 (257)
T cd05115          76 ASGGPLNKFLSGKK-DEITVSN----------------------------VVELMHQVSMGMKYLEGKNFVHRDLAARNV  126 (257)
T ss_pred             CCCCCHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhcCeeecccchheE
Confidence            99999999886432 2222222                            236789999999999999999999999999


Q ss_pred             EEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 010140          251 LVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQV  330 (517)
Q Consensus       251 Ll~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (517)
                      |++.++.+||+|||+++........                                                       
T Consensus       127 l~~~~~~~kl~dfg~~~~~~~~~~~-------------------------------------------------------  151 (257)
T cd05115         127 LLVNQHYAKISDFGLSKALGADDSY-------------------------------------------------------  151 (257)
T ss_pred             EEcCCCcEEeccCCccccccCCccc-------------------------------------------------------
Confidence            9999999999999998432210000                                                       


Q ss_pred             CCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHH
Q 010140          331 DGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINI  409 (517)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i  409 (517)
                                          ........++..|+|||++.+..++.++|||||||++|+|++ |..||.+....+....+
T Consensus       152 --------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~  211 (257)
T cd05115         152 --------------------YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFI  211 (257)
T ss_pred             --------------------eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHH
Confidence                                000011124678999999998889999999999999999996 99999988877776666


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....  ....      ...++.+||.+||..||++||++.
T Consensus       212 ~~~~~~~--~~~~------~~~~l~~li~~c~~~~~~~Rp~~~  246 (257)
T cd05115         212 EQGKRLD--CPAE------CPPEMYALMKDCWIYKWEDRPNFA  246 (257)
T ss_pred             HCCCCCC--CCCC------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            5543211  1111      123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-40  Score=321.16  Aligned_cols=261  Identities=28%  Similarity=0.410  Sum_probs=200.1

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      |++.+.||+|++|.||+|.+..     +++.+++|.+...... ......+..|+.+|+.++||||+++++++..+...|
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~-----~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   74 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKL-----TGEIVAIKKIKLRFES-EGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLY   74 (283)
T ss_pred             CccceeeecCCCceEEEEEcCC-----CCcEEEEEEecccccc-chhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEE
Confidence            6788999999999999999875     6788999998755322 123456667999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||++ ++|.+++.... ..+....                            +..++.||+.||.|||++||+|+||
T Consensus        75 ~v~e~~~-~~l~~~l~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~LH~~~i~H~dl  124 (283)
T cd05118          75 LVFEFMD-TDLYKLIKDRQ-RGLPESL----------------------------IKSYLYQLLQGLAFCHSHGILHRDL  124 (283)
T ss_pred             EEEeccC-CCHHHHHHhhc-ccCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeeecCc
Confidence            9999996 48888776532 2222222                            2367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      ||+||+++.++.++|+|||.+.......                                                    
T Consensus       125 ~p~nili~~~~~~~l~df~~~~~~~~~~----------------------------------------------------  152 (283)
T cd05118         125 KPENLLINTEGVLKLADFGLARSFGSPV----------------------------------------------------  152 (283)
T ss_pred             CHHHEEECCCCcEEEeeeeeeEecCCCc----------------------------------------------------
Confidence            9999999999999999999874322100                                                    


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                .......++..|+|||.+.+. .++.++|||||||++|+|++|+.||.+.+..+
T Consensus       153 --------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~  206 (283)
T cd05118         153 --------------------------RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID  206 (283)
T ss_pred             --------------------------ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                      001123578899999999877 68999999999999999999999998887766


Q ss_pred             HHHHHhcCCC-------------------CCCCCCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          405 TLINILKKPL-------------------TFPRIGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       405 ~~~~i~~~~~-------------------~~p~~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      .+..+.....                   .++........  ......++.+||.+||+.||.+||++.    ++++|||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~----~ll~~~~  282 (283)
T cd05118         207 QLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAE----QALAHPY  282 (283)
T ss_pred             HHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHH----HHhhCCC
Confidence            5555432110                   00100000000  012234689999999999999999998    9999999


Q ss_pred             c
Q 010140          464 F  464 (517)
Q Consensus       464 f  464 (517)
                      |
T Consensus       283 ~  283 (283)
T cd05118         283 F  283 (283)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1e-39  Score=324.38  Aligned_cols=256  Identities=26%  Similarity=0.347  Sum_probs=200.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ..|...+.||+|+||.||+|+++.     .+..+|+|.+............++..|+.+++.++|+||+++++++.....
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   89 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT   89 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcC-----CCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCe
Confidence            458888999999999999999876     567899999864322223344566779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+. |+|.+++.... ..+...                            .+..++.|++.||.|||+++++||
T Consensus        90 ~~lv~e~~~-~~l~~~~~~~~-~~l~~~----------------------------~~~~~~~~l~~~l~~LH~~~i~H~  139 (308)
T cd06634          90 AWLVMEYCL-GSASDLLEVHK-KPLQEV----------------------------EIAAVTHGALQGLAYLHSHNMIHR  139 (308)
T ss_pred             eEEEEEccC-CCHHHHHHHcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCcccC
Confidence            999999995 68877665432 222222                            223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.++|+|||++.....                                                    
T Consensus       140 dl~p~nil~~~~~~~kl~dfg~~~~~~~----------------------------------------------------  167 (308)
T cd06634         140 DVKAGNILLSEPGLVKLGDFGSASIMAP----------------------------------------------------  167 (308)
T ss_pred             CCCHHhEEECCCCcEEECCcccceeecC----------------------------------------------------
Confidence            9999999999999999999998732110                                                    


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .....|++.|+|||.+.+   ..++.++|||||||++|+|++|..||...
T Consensus       168 ------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         168 ------------------------------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             ------------------------------cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence                                          112358889999999853   45788999999999999999999999877


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +.......+...........       .....+.+||.+||..+|++||++.    ++++|||+...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~cl~~~P~~Rp~~~----~ll~~~~~~~~  273 (308)
T cd06634         218 NAMSALYHIAQNESPALQSG-------HWSEYFRNFVDSCLQKIPQDRPTSE----VLLKHRFVLRE  273 (308)
T ss_pred             cHHHHHHHHhhcCCCCcCcc-------cccHHHHHHHHHHhhCCcccCCCHH----HHhhCcccccc
Confidence            66655555554332211111       1122489999999999999999998    99999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.6e-39  Score=313.79  Aligned_cols=241  Identities=23%  Similarity=0.277  Sum_probs=189.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||++..       .++.||+|.+....     ....+.+|+.+++.++||||+++++++..+
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~-------~~~~~~iK~~~~~~-----~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   71 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY-------TGQKVAVKNIKCDV-----TAQAFLEETAVMTKLHHKNLVRLLGVILHN   71 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc-------CCCceEEEeecCcc-----hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC
Confidence            456899999999999999999864       34679999986542     124566799999999999999999998765


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                       ..|+||||+++++|.+++.......+++...                            ..++.|++.||.|||++|++
T Consensus        72 -~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~~qi~~al~~lH~~~~~  122 (254)
T cd05083          72 -GLYIVMELMSKGNLVNFLRTRGRALVSVIQL----------------------------LQFSLDVAEGMEYLESKKLV  122 (254)
T ss_pred             -CcEEEEECCCCCCHHHHHHhcCcCCCCHHHH----------------------------HHHHHHHHHHHHHHHhCCee
Confidence             4799999999999999987654333332222                            36789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.+||+|||+++....                                                  
T Consensus       123 H~dl~p~nili~~~~~~kl~Dfg~~~~~~~--------------------------------------------------  152 (254)
T cd05083         123 HRDLAARNILVSEDGVAKVSDFGLARVGSM--------------------------------------------------  152 (254)
T ss_pred             ccccCcceEEEcCCCcEEECCCccceeccc--------------------------------------------------
Confidence            999999999999999999999998732110                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                     .......+..|+|||.+.+..++.++|||||||++|+|++ |..||...
T Consensus       153 -------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         153 -------------------------------GVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             -------------------------------cCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence                                           0001123567999999988889999999999999999997 99999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +..+....+.......+.  ..      .+..+.+||.+||+.+|++||++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~p~~Rp~~~  245 (254)
T cd05083         202 SLKEVKECVEKGYRMEPP--EG------CPADVYVLMTSCWETEPKKRPSFH  245 (254)
T ss_pred             CHHHHHHHHhCCCCCCCC--Cc------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            777666655543221111  11      123589999999999999999996

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.6e-39  Score=326.48  Aligned_cols=269  Identities=26%  Similarity=0.304  Sum_probs=195.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec---
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA---  160 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~---  160 (517)
                      +|++.+.||+|+||.||+|++....   .+..||+|.+..... .......+.+|+.+++++ +||||+++++.+..   
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~---~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~   76 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETS---EEETVAIKKITNVFS-KKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPG   76 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCC---cCceEEEEEeccccc-cchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccc
Confidence            4899999999999999999987621   167899999864321 122344566799999999 59999999986532   


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ...+|++|||+ +++|.+++...  ..+....                            ++.++.||+.||.|||++|
T Consensus        77 ~~~~~~~~~e~~-~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~aL~~LH~~g  125 (332)
T cd07857          77 NFNELYLYEELM-EADLHQIIRSG--QPLTDAH----------------------------FQSFIYQILCGLKYIHSAN  125 (332)
T ss_pred             cCCcEEEEEecc-cCCHHHHHhcC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence             34678999999 57898887543  2233222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.+......                                            
T Consensus       126 ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~--------------------------------------------  161 (332)
T cd07857         126 VLHRDLKPGNLLVNADCELKICDFGLARGFSENPGE--------------------------------------------  161 (332)
T ss_pred             cccCCCCHHHeEEcCCCCEEeCcCCCceeccccccc--------------------------------------------
Confidence            999999999999999999999999998543211000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                    .........||+.|+|||++.+ ..++.++|||||||++|+|++|.+||.
T Consensus       162 ------------------------------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~  211 (332)
T cd07857         162 ------------------------------NAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFK  211 (332)
T ss_pred             ------------------------------ccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCC
Confidence                                          0011223578999999998876 458999999999999999999999998


Q ss_pred             CCChHHHHHHHhcCCCCCCC--------------------CCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          399 GENNEKTLINILKKPLTFPR--------------------IGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~--------------------~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      +.+....+..++......+.                    .......  .......+.+||.+||+.||.+||++.    
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~----  287 (332)
T cd07857         212 GKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVE----  287 (332)
T ss_pred             CCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHH----
Confidence            87655444433321110000                    0000000  001234589999999999999999997    


Q ss_pred             HhhcCCCcCC
Q 010140          457 EIKRHEFFKG  466 (517)
Q Consensus       457 ell~hp~f~~  466 (517)
                      +++.||||+.
T Consensus       288 ~ll~~~~~~~  297 (332)
T cd07857         288 EALEHPYLAI  297 (332)
T ss_pred             HHhcChhhhh
Confidence            9999999964

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2.8e-39  Score=312.24  Aligned_cols=250  Identities=23%  Similarity=0.308  Sum_probs=196.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+|++.+.||+|+||.||+|.+..      +..+|+|.+......    ...+..|+.+++.++||||+++++++....
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~------~~~~~~k~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLE------KRKVAIKTIREGAMS----EEDFIEEAQVMMKLSHPKLVQLYGVCTERS   72 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeC------CCeEEEEECCCCCCC----HHHHHHHHHHHHhCCCCCeeeEEEEEccCC
Confidence            4689999999999999999998763      357999998754322    234566999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|.+++..... .+....                            ++.++.|++.||+|||++|++|
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~----------------------------~~~~~~~l~~~l~~lH~~~i~h  123 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQRG-KFSQET----------------------------LLGMCLDVCEGMAYLESSNVIH  123 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCcc-CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            99999999999999988865421 222222                            2367789999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||+++.++.++|+|||++.......                                                 
T Consensus       124 ~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-------------------------------------------------  154 (256)
T cd05112         124 RDLAARNCLVGENQVVKVSDFGMTRFVLDDQ-------------------------------------------------  154 (256)
T ss_pred             cccccceEEEcCCCeEEECCCcceeecccCc-------------------------------------------------
Confidence            9999999999999999999999874321000                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........++..|+|||.+.+..++.++|||||||++|||++ |..||....
T Consensus       155 ----------------------------~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~  206 (256)
T cd05112         155 ----------------------------YTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS  206 (256)
T ss_pred             ----------------------------ccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC
Confidence                                        000112235678999999998889999999999999999998 999999887


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .......+..+........  .      ...+.+|+.+||+.+|++||++.    ++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~l~~~~l~~~p~~Rp~~~----~~l~  253 (256)
T cd05112         207 NSEVVETINAGFRLYKPRL--A------SQSVYELMQHCWKERPEDRPSFS----LLLH  253 (256)
T ss_pred             HHHHHHHHhCCCCCCCCCC--C------CHHHHHHHHHHcccChhhCCCHH----HHHH
Confidence            7777766654422221111  1      12489999999999999999997    7765

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.2e-39  Score=315.33  Aligned_cols=255  Identities=21%  Similarity=0.254  Sum_probs=196.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.++..... ....+|+|.+.....  ......+.+|+.+++.++||||+++++++..
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~-~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   80 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEK-VKIPVAIKVLREETS--PKANKEILDEAYVMASVDHPHVVRLLGICLS   80 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCC-cceEEEEEeccCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEec
Confidence            3457899999999999999999998753221 345799998875532  2344567779999999999999999999887


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ...++||||+++|+|.+++..... .++..                            .+..++.||+.||+|||++||
T Consensus        81 -~~~~~v~e~~~~g~L~~~l~~~~~-~~~~~----------------------------~~~~~~~qi~~~l~~LH~~~i  130 (279)
T cd05057          81 -SQVQLITQLMPLGCLLDYVRNHKD-NIGSQ----------------------------YLLNWCVQIAKGMSYLEEKRL  130 (279)
T ss_pred             -CceEEEEecCCCCcHHHHHHhccC-CCCHH----------------------------HHHHHHHHHHHHHHHHHhCCE
Confidence             788999999999999998876422 12222                            223678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.+......                                             
T Consensus       131 ~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~---------------------------------------------  165 (279)
T cd05057         131 VHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE---------------------------------------------  165 (279)
T ss_pred             EecccCcceEEEcCCCeEEECCCcccccccCcccc---------------------------------------------
Confidence            99999999999999999999999998543210000                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......++..|+|||.+....++.++|||||||++|||++ |..||.+
T Consensus       166 -------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  214 (279)
T cd05057         166 -------------------------------YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEG  214 (279)
T ss_pred             -------------------------------eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCC
Confidence                                           00011124568999999988889999999999999999998 9999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ....+....+..... .+.... .      ..++.++|.+||..||.+||++.
T Consensus       215 ~~~~~~~~~~~~~~~-~~~~~~-~------~~~~~~~~~~~l~~~p~~Rp~~~  259 (279)
T cd05057         215 IPAVEIPDLLEKGER-LPQPPI-C------TIDVYMVLVKCWMIDAESRPTFK  259 (279)
T ss_pred             CCHHHHHHHHhCCCC-CCCCCC-C------CHHHHHHHHHHcCCChhhCCCHH
Confidence            877776666654322 221111 1      12488999999999999999997

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=2.2e-39  Score=324.75  Aligned_cols=262  Identities=26%  Similarity=0.340  Sum_probs=196.1

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-  160 (517)
                      ..++|++.+.||.|+||.||+|.+..     +++.||+|.+.+.... ......+..|+.+++.++||||++++++|.. 
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   81 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQL-----TGQNVAIKKIMKPFST-PVLAKRTYRELKLLKHLRHENIISLSDIFISP   81 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECC-----CCCEEEEEEecccccc-cchhHHHHHHHHHHHhcCCCCeeeEeeeEecC
Confidence            45789999999999999999999886     6788999987643211 1233556679999999999999999999865 


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....|+||||+ +++|..++...   .+....                            .+.++.||+.||+|||++||
T Consensus        82 ~~~~~lv~e~~-~~~L~~~~~~~---~~~~~~----------------------------~~~~~~ql~~aL~~LH~~~i  129 (328)
T cd07856          82 LEDIYFVTELL-GTDLHRLLTSR---PLEKQF----------------------------IQYFLYQILRGLKYVHSAGV  129 (328)
T ss_pred             CCcEEEEeehh-ccCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCc
Confidence            56889999999 67898877542   222211                            13578999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.++|+|||++....                                                  
T Consensus       130 iH~dl~p~Nili~~~~~~~l~dfg~~~~~~--------------------------------------------------  159 (328)
T cd07856         130 VHRDLKPSNILINENCDLKICDFGLARIQD--------------------------------------------------  159 (328)
T ss_pred             ccCCCCHHHEeECCCCCEEeCccccccccC--------------------------------------------------
Confidence            999999999999999999999999873211                                                  


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .......+++.|+|||.+.+ ..++.++|||||||++|+|++|+.||.+
T Consensus       160 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~  208 (328)
T cd07856         160 -------------------------------PQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG  208 (328)
T ss_pred             -------------------------------CCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                                           01122357889999999876 4689999999999999999999999987


Q ss_pred             CChHHHHHHHhcCCC--------------------CCCCCCCCCch-h-HHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          400 ENNEKTLINILKKPL--------------------TFPRIGVSSSK-E-FEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~--------------------~~p~~~~~~~~-~-~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      .........+.....                    ..+........ . ......+.++|.+||+.+|++||++.    +
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~----e  284 (328)
T cd07856         209 KDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAA----E  284 (328)
T ss_pred             CCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHH----H
Confidence            665332222111000                    00000000000 0 01223589999999999999999998    9


Q ss_pred             hhcCCCcCC
Q 010140          458 IKRHEFFKG  466 (517)
Q Consensus       458 ll~hp~f~~  466 (517)
                      ++.||||+.
T Consensus       285 ll~~~~~~~  293 (328)
T cd07856         285 ALAHPYLAP  293 (328)
T ss_pred             HhcCCcccc
Confidence            999999963

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-39  Score=326.97  Aligned_cols=258  Identities=27%  Similarity=0.309  Sum_probs=192.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|.-...||+|+||.||+|...+      +..||||.+.......   ...|..|+.+|.+++|||+|+|+|||.+.+
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~------~~~vAVK~~~~~~~~~---~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~  144 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSD------GTVVAVKRLSSNSGQG---EREFLNEVEILSRLRHPNLVKLLGYCLEGG  144 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECC------CCEEEEEEecCCCCcc---hhHHHHHHHHHhcCCCcCcccEEEEEecCC
Confidence            3789999999999999999999875      3789999887653221   344888999999999999999999999888


Q ss_pred             -eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC--
Q 010140          163 -YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--  239 (517)
Q Consensus       163 -~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~--  239 (517)
                       ..+||+||+++|+|.+++......  +......                          .+|+.++|+||+|||...  
T Consensus       145 ~~~~LVYEym~nGsL~d~L~~~~~~--~L~W~~R--------------------------~kIa~g~A~gL~yLH~~~~~  196 (361)
T KOG1187|consen  145 EHRLLVYEYMPNGSLEDHLHGKKGE--PLDWETR--------------------------LKIALGAARGLAYLHEGCPP  196 (361)
T ss_pred             ceEEEEEEccCCCCHHHHhCCCCCC--CCCHHHH--------------------------HHHHHHHHHHHHHHccCCCC
Confidence             599999999999999988765322  2222211                          268999999999999864  


Q ss_pred             -ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          240 -IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       240 -iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                       |||||||++|||+|.++.+||+|||+|+.....                                              
T Consensus       197 ~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~----------------------------------------------  230 (361)
T KOG1187|consen  197 PIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEG----------------------------------------------  230 (361)
T ss_pred             CEecCCCCHHHeeECCCCCEEccCccCcccCCcc----------------------------------------------
Confidence             999999999999999999999999998432210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCccc-CCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSF-VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ....... .||.+|+|||++.....+.++|||||||+|.||++|+.+.
T Consensus       231 --------------------------------~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~  278 (361)
T KOG1187|consen  231 --------------------------------DTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAV  278 (361)
T ss_pred             --------------------------------ccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCccc
Confidence                                            0000111 6999999999999888999999999999999999999988


Q ss_pred             CCCC---h---HHHHHHHhcCC-C-CC--CCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGEN---N---EKTLINILKKP-L-TF--PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~---~---~~~~~~i~~~~-~-~~--p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      +...   .   .+.....+... . .+  |..........++...+..+..+|++.+|.+||++.+.+
T Consensus       279 d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv  346 (361)
T KOG1187|consen  279 DQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV  346 (361)
T ss_pred             CCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence            7532   1   11111122211 1 11  111101111113455688999999999999999997433

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=3.9e-39  Score=313.82  Aligned_cols=251  Identities=20%  Similarity=0.284  Sum_probs=183.4

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|+....   .+...+|+|.+......  .....+.+|+.+++.++||||+++++++.+....|+|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~---~~~~~~~~k~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   75 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSG---YTPAQVVVKELRVSASV--QEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVME   75 (269)
T ss_pred             CcccccCCceEEEEEEcCC---CCceEEEEEecCCCCCh--HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEE
Confidence            3699999999999987642   24567999988654321  223456779999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCc-cCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          170 YCPGGDLYAARQRQPGKR-FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      |+++|+|.+++....... .....                          ..++.++.|++.||+|||++|++||||||+
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~--------------------------~~~~~~~~qi~~al~~lH~~~i~H~dlkp~  129 (269)
T cd05087          76 FCPLGDLKGYLRSCRKAELMTPDP--------------------------TTLQRMACEIALGLLHLHKNNFIHSDLALR  129 (269)
T ss_pred             CCCCCcHHHHHHHhhhcccccccH--------------------------HHHHHHHHHHHHHHHHHHHCCEeccccCcc
Confidence            999999999987542211 11111                          112367899999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      ||+++.++.+||+|||+++.......                                                      
T Consensus       130 nil~~~~~~~kL~dfg~~~~~~~~~~------------------------------------------------------  155 (269)
T cd05087         130 NCLLTADLTVKIGDYGLSHNKYKEDY------------------------------------------------------  155 (269)
T ss_pred             eEEEcCCCcEEECCccccccccCcce------------------------------------------------------
Confidence            99999999999999998732110000                                                      


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-------CCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-------GHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-------~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                            ........|+..|+|||++.+.       .++.++|||||||++|||++ |..||...
T Consensus       156 ----------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  213 (269)
T cd05087         156 ----------------------YVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHL  213 (269)
T ss_pred             ----------------------eecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCC
Confidence                                  0011223578889999998643       35789999999999999996 99999877


Q ss_pred             ChHHHHHHHhcC-CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKK-PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ...+........ ....+......    .....+.++|.+|+ .+|++||++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~c~-~~P~~Rpt~~  261 (269)
T cd05087         214 SDEQVLTYTVREQQLKLPKPRLKL----PLSDRWYEVMQFCW-LQPEQRPSAE  261 (269)
T ss_pred             ChHHHHHHHhhcccCCCCCCccCC----CCChHHHHHHHHHh-cCcccCCCHH
Confidence            666554443322 22222211110    11124789999999 6899999997

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-40  Score=339.14  Aligned_cols=262  Identities=28%  Similarity=0.447  Sum_probs=212.7

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      ....+-|+++..||.|.+|.||+++.++     +++..|+|+.....    ..-+.++.|..||+.+ +|||++.+|++|
T Consensus        15 pdp~d~~ei~evig~Gtygkv~k~k~~~-----~~~~aa~kI~~~~~----d~deEiE~eynil~~~~~hpnv~~fyg~~   85 (953)
T KOG0587|consen   15 PDPADIFEIIEVIGNGTYGKVYKGRHVK-----TGQLAAIKIMDPTE----DEEEEIELEYNMLKKYSHHPNVATFYGAF   85 (953)
T ss_pred             CCCCCccEEEEEEeeccceeEEEEeeee-----cCceeeeEeecCCc----cccHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            3456789999999999999999999988     67788999886553    2234455588888887 799999999998


Q ss_pred             e-----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          159 E-----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       159 ~-----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      .     .++.+|||||||.||+.-++++...+.++.+..+.                            .|++.++.||.
T Consensus        86 ~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~Ia----------------------------YI~re~lrgl~  137 (953)
T KOG0587|consen   86 IKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIA----------------------------YILREILRGLA  137 (953)
T ss_pred             EEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHH----------------------------HHHHHHHHHHH
Confidence            5     46789999999999999999987764444443332                            77899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      +||.+.+||||||-.|||++.+|.|||+|||++..++.                                          
T Consensus       138 HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQlds------------------------------------------  175 (953)
T KOG0587|consen  138 HLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDS------------------------------------------  175 (953)
T ss_pred             HHhhcceeeecccCceEEEeccCcEEEeeeeeeeeeec------------------------------------------
Confidence            99999999999999999999999999999999844331                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-----CCCccchHHHHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-----GHGSAVDWWTLGVFLY  388 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-----~~~~~~DiWSlGvil~  388 (517)
                                                          ...+..+++|||.|||||++...     .|+..+|+||||++..
T Consensus       176 ------------------------------------T~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaI  219 (953)
T KOG0587|consen  176 ------------------------------------TVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAI  219 (953)
T ss_pred             ------------------------------------ccccccCcCCCcccccceeeecccCCCCCcccccchhhccceee
Confidence                                                12345678999999999999753     3688999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||.-|.+|+.+..+...+..|-..+++-......    |  ..++.++|..||.+|-++||+..    ++|+|||++.
T Consensus       220 EladG~PPl~DmHPmraLF~IpRNPPPkLkrp~k----W--s~~FndFIs~cL~Kd~e~RP~~~----~ll~hpFi~e  287 (953)
T KOG0587|consen  220 EMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKK----W--SKKFNDFISTCLVKDYEQRPSTE----ELLKHPFITE  287 (953)
T ss_pred             hhcCCCCCccCcchhhhhccCCCCCCccccchhh----H--HHHHHHHHHHHHhhccccCcchh----hhccCCcccc
Confidence            9999999999988877777665554322221111    2  23589999999999999999998    9999999973

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-39  Score=318.25  Aligned_cols=260  Identities=28%  Similarity=0.431  Sum_probs=197.2

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCcee
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHYS  164 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~  164 (517)
                      |++.+.||+|+||.||+|+...     +++.||||.+......  .......+|+..+++++ ||||+++++++..++..
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~-----~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   73 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKE-----TGELVAIKKMKKKFYS--WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDEL   73 (283)
T ss_pred             CeeheeeccCCceEEEEEEECC-----CCcEEEEEEehhhccc--hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcE
Confidence            6789999999999999999876     5688999998654321  11122345888999998 99999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+ +|+|.+++.......++....                            ..++.||+.||.|||++|++|+|
T Consensus        74 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~l~~Lh~~~i~H~d  124 (283)
T cd07830          74 YFVFEYM-EGNLYQLMKDRKGKPFSESVI----------------------------RSIIYQILQGLAHIHKHGFFHRD  124 (283)
T ss_pred             EEEEecC-CCCHHHHHHhcccccCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcccCC
Confidence            9999999 889998887653223332222                            36789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||+++.++.++|+|||+++.....                                                    
T Consensus       125 l~~~ni~i~~~~~~~l~d~~~~~~~~~~----------------------------------------------------  152 (283)
T cd07830         125 LKPENLLVSGPEVVKIADFGLAREIRSR----------------------------------------------------  152 (283)
T ss_pred             CChhhEEEcCCCCEEEeecccceeccCC----------------------------------------------------
Confidence            9999999999999999999987432110                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 .......|+..|+|||++.+. .++.++|+|||||++|+|++|++||......
T Consensus       153 ---------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~  205 (283)
T cd07830         153 ---------------------------PPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEI  205 (283)
T ss_pred             ---------------------------CCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChH
Confidence                                       001223578899999988654 4789999999999999999999999887766


Q ss_pred             HHHHHHhcCCCC-------------------CCCCCCCCchhH--HhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          404 KTLINILKKPLT-------------------FPRIGVSSSKEF--EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       404 ~~~~~i~~~~~~-------------------~p~~~~~~~~~~--~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      +.+.++......                   .+..........  ....++.+||.+||+.||++||++.    |++.||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~----ei~~~~  281 (283)
T cd07830         206 DQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTAS----QALQHP  281 (283)
T ss_pred             HHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHH----HHhhCC
Confidence            555444321100                   000000000000  1124689999999999999999998    999999


Q ss_pred             Cc
Q 010140          463 FF  464 (517)
Q Consensus       463 ~f  464 (517)
                      ||
T Consensus       282 ~~  283 (283)
T cd07830         282 YF  283 (283)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=9.4e-40  Score=328.91  Aligned_cols=270  Identities=29%  Similarity=0.398  Sum_probs=199.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA-  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~-  160 (517)
                      .++|++.+.||+|+||.||+|.+..     +++.+|+|.+.+.... ......+.+|+.+++++ +||||+++++++.. 
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~-----~~~~~~vK~~~~~~~~-~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~   79 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRR-----TKEVVALKKIFDAFRN-ATDAQRTFREIMFLQELGDHPNIVKLLNVIKAE   79 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcC-----CCeEEEEEeeccccCc-chhhhhhhHHHHHHHHhcCCCCccceeeeeccC
Confidence            4689999999999999999999876     5688999988543111 12234556799999999 99999999998864 


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ....|+||||++ ++|..++...   .+...                            ..+.++.||+.||+|||++|
T Consensus        80 ~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~----------------------------~~~~i~~qi~~~L~~LH~~~  127 (337)
T cd07852          80 NDKDIYLVFEYME-TDLHAVIRAN---ILEDV----------------------------HKRYIMYQLLKALKYIHSGN  127 (337)
T ss_pred             CCceEEEEecccc-cCHHHHHhcC---CCCHH----------------------------HHHHHHHHHHHHHHHHHHCC
Confidence             346899999996 5998877542   11111                            11357899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++........                                            
T Consensus       128 i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~--------------------------------------------  163 (337)
T cd07852         128 VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEEN--------------------------------------------  163 (337)
T ss_pred             eecCCCCHHHEEEcCCCcEEEeeccchhcccccccc--------------------------------------------
Confidence            999999999999999999999999998543210000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ..........||+.|+|||++.+. .++.++|||||||++|+|++|+.||.
T Consensus       164 -----------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~  214 (337)
T cd07852         164 -----------------------------PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFP  214 (337)
T ss_pred             -----------------------------ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCC
Confidence                                         000112234689999999988654 47889999999999999999999998


Q ss_pred             CCChHHHHHHHhcCCCCCC--------------------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          399 GENNEKTLINILKKPLTFP--------------------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p--------------------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      +....+...++.......+                    .........  .....++.+||.+||+.||++||++.    
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~----  290 (337)
T cd07852         215 GTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAE----  290 (337)
T ss_pred             CCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHH----
Confidence            8766555444432211100                    000000000  01234589999999999999999998    


Q ss_pred             HhhcCCCcCCC
Q 010140          457 EIKRHEFFKGI  467 (517)
Q Consensus       457 ell~hp~f~~~  467 (517)
                      ++++||||+..
T Consensus       291 ~il~~~~~~~~  301 (337)
T cd07852         291 EALEHPYVAQF  301 (337)
T ss_pred             HHhhChhhhhh
Confidence            99999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=4.7e-39  Score=315.61  Aligned_cols=253  Identities=21%  Similarity=0.267  Sum_probs=184.8

Q ss_pred             CCc-eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           84 DHF-RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        84 ~~y-~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      ++| ++++.||+|+||+||++...... ...++.||+|++.....  ......+.+|+.+|+.++||||+++++++..  
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPAN-DGTGEMVAVKTLKRECG--QQNTSGWKKEINILKTLYHENIVKYKGCCSEQG   79 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEcccc-CCCCceEEEEEeccccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            345 99999999999999998754321 12567899999875421  1233456679999999999999999998764  


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+|+||||+++|+|.+++...   .+++..                            ++.++.|++.||+|||++||
T Consensus        80 ~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~----------------------------~~~i~~~l~~~l~~lH~~~i  128 (283)
T cd05080          80 GKGLQLIMEYVPLGSLRDYLPKH---KLNLAQ----------------------------LLLFAQQICEGMAYLHSQHY  128 (283)
T ss_pred             CceEEEEecCCCCCCHHHHHHHc---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence            44689999999999999988653   232222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++........                                             
T Consensus       129 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~---------------------------------------------  163 (283)
T cd05080         129 IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY---------------------------------------------  163 (283)
T ss_pred             eccccChheEEEcCCCcEEEeecccccccCCcchh---------------------------------------------
Confidence            99999999999999999999999998543210000                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    ........++..|+|||.+.+..++.++|||||||++|||++|..||...
T Consensus       164 ------------------------------~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  213 (283)
T cd05080         164 ------------------------------YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSP  213 (283)
T ss_pred             ------------------------------hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence                                          00001123566799999998888999999999999999999999998654


Q ss_pred             ChH--HHH------------HHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNE--KTL------------INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~--~~~------------~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ...  +..            ..........+. ..      ..+..+.+|+.+||+.||++||++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~li~~cl~~~p~~Rps~~  272 (283)
T cd05080         214 PKKFEEMIGPKQGQMTVVRLIELLERGMRLPC-PK------NCPQEVYILMKNCWETEAKFRPTFR  272 (283)
T ss_pred             cchhhhhhcccccccchhhhhhhhhcCCCCCC-CC------CCCHHHHHHHHHHhccChhhCCCHH
Confidence            321  000            001111111110 00      1223589999999999999999997

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=6.8e-39  Score=312.21  Aligned_cols=252  Identities=26%  Similarity=0.316  Sum_probs=193.9

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+.+.||+|+||.||+|.+.....  ....||||.......  ....+.+..|+.+++.++||||+++++++.+ 
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~~~~v~ik~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-   78 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPEN--EKIAVAVKTCKNCTS--PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-   78 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCC--CCcceEEEecCCcCC--HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-
Confidence            44679999999999999999998765311  345689998865431  1334567779999999999999999998875 


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||+++|+|.+++.... ..+....                            +..++.||+.||+|||++|++
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~~l~~~l~~lH~~~~~  129 (270)
T cd05056          79 NPVWIVMELAPLGELRSYLQVNK-YSLDLAS----------------------------LILYSYQLSTALAYLESKRFV  129 (270)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCee
Confidence            45789999999999999987642 1222221                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.......                                               
T Consensus       130 H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-----------------------------------------------  162 (270)
T cd05056         130 HRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY-----------------------------------------------  162 (270)
T ss_pred             ccccChheEEEecCCCeEEccCceeeecccccc-----------------------------------------------
Confidence            999999999999999999999999843321000                                               


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                    .......++..|+|||.+.+..++.++|||||||++|||++ |..||.+.
T Consensus       163 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  212 (270)
T cd05056         163 ------------------------------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGV  212 (270)
T ss_pred             ------------------------------eecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCC
Confidence                                          00011234568999999988889999999999999999996 99999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ...+....+..+......  ..      .+..+.+||.+||..+|.+||++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~~P~~Rpt~~  256 (270)
T cd05056         213 KNNDVIGRIENGERLPMP--PN------CPPTLYSLMTKCWAYDPSKRPRFT  256 (270)
T ss_pred             CHHHHHHHHHcCCcCCCC--CC------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            877766666554322111  11      122589999999999999999997

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=6.8e-39  Score=313.91  Aligned_cols=263  Identities=16%  Similarity=0.178  Sum_probs=197.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|.+..... .....|++|.+....  .......+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~-~~~~~v~~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~   79 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKP-GKEEEVFVKTVKDHA--SEIQVTLLLQESCLLYGLSHQNILPILHVCIE   79 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCC-CceeEEEEEEccCCC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec
Confidence            345789999999999999999999876321 135789999886432  12335667779999999999999999997655


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       +...++++||+++|+|.+++.........                      .........+..++.||+.||+|||+++
T Consensus        80 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~----------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~  137 (280)
T cd05043          80 DGEPPFVLYPYMNWGNLKLFLQQCRLGEAN----------------------NPQALSTQQLVHMAIQIACGMSYLHKRG  137 (280)
T ss_pred             CCCCCEEEEEcCCCCcHHHHHHhccccccc----------------------cccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence             57789999999999999998764322100                      0001112223467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ++||||||+||+++.++.+||+|||+++.+......                                            
T Consensus       138 i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~--------------------------------------------  173 (280)
T cd05043         138 VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYH--------------------------------------------  173 (280)
T ss_pred             EeecccCHhhEEEcCCCcEEECCCCCcccccCCceE--------------------------------------------
Confidence            999999999999999999999999998543210000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                      .......++..|+|||++.+..++.++|||||||++||+++ |+.||.
T Consensus       174 --------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  221 (280)
T cd05043         174 --------------------------------CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYV  221 (280)
T ss_pred             --------------------------------EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcC
Confidence                                            00011235678999999998889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+..+....+.... ..+.. ..      .+..+.+++.+||..||++||++.
T Consensus       222 ~~~~~~~~~~~~~~~-~~~~~-~~------~~~~~~~li~~~l~~~p~~Rps~~  267 (280)
T cd05043         222 EIDPFEMAAYLKDGY-RLAQP-IN------CPDELFAVMACCWALDPEERPSFS  267 (280)
T ss_pred             cCCHHHHHHHHHcCC-CCCCC-Cc------CCHHHHHHHHHHcCCChhhCCCHH
Confidence            877766555544432 22211 11      122589999999999999999997

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-39  Score=319.75  Aligned_cols=261  Identities=30%  Similarity=0.427  Sum_probs=200.0

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      |++.+.||+|+||.||+|+...     +++.||+|++..... .......+..|+.+++.++|+||+++++++.+.+..|
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~-----~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   74 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKK-----TGEIVALKKIRLDNE-EEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLY   74 (282)
T ss_pred             CeeehcccccCcceEEEeeecC-----CCcEEEEEEeccccc-cccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceE
Confidence            6778899999999999999886     678999999976531 1233455667999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||++ ++|.+++.... ..+....                            +..++.|++.||+|||++||+||||
T Consensus        75 ~v~e~~~-~~l~~~i~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~LH~~~i~H~~l  124 (282)
T cd07829          75 LVFEYCD-MDLKKYLDKRP-GPLSPNL----------------------------IKSIMYQLLRGLAYCHSHRILHRDL  124 (282)
T ss_pred             EEecCcC-cCHHHHHHhhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcccCCC
Confidence            9999996 59999887642 1222222                            2367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      +|+||+++.++.++|+|||+++......                                                    
T Consensus       125 ~~~ni~~~~~~~~~l~d~g~~~~~~~~~----------------------------------------------------  152 (282)
T cd07829         125 KPQNILINRDGVLKLADFGLARAFGIPL----------------------------------------------------  152 (282)
T ss_pred             ChheEEEcCCCCEEEecCCcccccCCCc----------------------------------------------------
Confidence            9999999999999999999874322100                                                    


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                .......++..|+|||.+.+. .++.++|||||||++|||++|.+||.+.+..+
T Consensus       153 --------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~  206 (282)
T cd07829         153 --------------------------RTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID  206 (282)
T ss_pred             --------------------------cccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHH
Confidence                                      011122467789999999876 68999999999999999999999999887666


Q ss_pred             HHHHHhcCC------------------CCCCCCCCCCc-hhH-HhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          405 TLINILKKP------------------LTFPRIGVSSS-KEF-EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       405 ~~~~i~~~~------------------~~~p~~~~~~~-~~~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .+.++....                  ..++....... ..+ .....+.++|.+||..||++||++.    +++.||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~----~~l~~p~~  282 (282)
T cd07829         207 QLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAK----EALKHPYF  282 (282)
T ss_pred             HHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHH----HHhhCcCC
Confidence            555443211                  01111100000 000 1133589999999999999999998    99999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-39  Score=314.53  Aligned_cols=243  Identities=23%  Similarity=0.284  Sum_probs=183.4

Q ss_pred             eeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV  167 (517)
                      +.||+|+||.||+|.++....  ......+|+|.+....   ......+..|+.+++.++||||+++++++..+...++|
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH---RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh---HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            369999999999998865221  1234568888886543   23344566799999999999999999999999999999


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCC
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP  247 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp  247 (517)
                      |||+++|+|..++..... .+....                            ...++.||+.||+|||++||+||||||
T Consensus        78 ~e~~~~g~L~~~l~~~~~-~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~iiH~dlkp  128 (258)
T cd05078          78 QEYVKFGSLDTYLKKNKN-LINISW----------------------------KLEVAKQLAWALHFLEDKGLTHGNVCA  128 (258)
T ss_pred             EecCCCCcHHHHHhcCCC-CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecCCCcc
Confidence            999999999999876431 122211                            136789999999999999999999999


Q ss_pred             CceEEccCCc--------EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          248 ENVLVREDGH--------IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       248 ~NILl~~~~~--------vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +|||++.++.        ++++|||++....                                                 
T Consensus       129 ~nili~~~~~~~~~~~~~~~l~d~g~~~~~~-------------------------------------------------  159 (258)
T cd05078         129 KNVLLIREEDRKTGNPPFIKLSDPGISITVL-------------------------------------------------  159 (258)
T ss_pred             ceEEEecccccccCCCceEEecccccccccC-------------------------------------------------
Confidence            9999987765        6899999863211                                                 


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhC-CCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYG-TTPF  397 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG-~~Pf  397 (517)
                                                       ......+++.|+|||++.+. .++.++|||||||++|+|++| ..||
T Consensus       160 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~  206 (258)
T cd05078         160 ---------------------------------PKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPL  206 (258)
T ss_pred             ---------------------------------CchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCCh
Confidence                                             01123578899999999874 479999999999999999998 5666


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ...+...... +.......|...         ..++.+||.+||+.||++||++.    ++++
T Consensus       207 ~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~----~il~  255 (258)
T cd05078         207 SALDSQKKLQ-FYEDRHQLPAPK---------WTELANLINQCMDYEPDFRPSFR----AIIR  255 (258)
T ss_pred             hhccHHHHHH-HHHccccCCCCC---------cHHHHHHHHHHhccChhhCCCHH----HHHH
Confidence            6655544332 333333333211         12489999999999999999997    7765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.9e-39  Score=315.15  Aligned_cols=258  Identities=23%  Similarity=0.292  Sum_probs=189.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--c
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--H  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~  162 (517)
                      -|++++.||+|+||.||+|+..... ..+++.||+|.+.....  ......+.+|+.+++.++||||+++++++...  .
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEG-DNTGEQVAVKSLKPESG--GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   81 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCC-CCccceEEEEEcCcccc--HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCC
Confidence            4789999999999999999864321 12578899999874421  23345677899999999999999999998765  5


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++|++|.+++.... ..++....                            ..++.||+.||+|||++||+|
T Consensus        82 ~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~----------------------------~~i~~~i~~aL~~lH~~gi~H  132 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYLPRNK-NKINLKQQ----------------------------LKYAVQICKGMDYLGSRQYVH  132 (284)
T ss_pred             ceEEEEEccCCCCHHHHHHhcc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeee
Confidence            7899999999999999886542 12222222                            267899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.++|+|||+++.+......                                               
T Consensus       133 ~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~-----------------------------------------------  165 (284)
T cd05079         133 RDLAARNVLVESEHQVKIGDFGLTKAIETDKEY-----------------------------------------------  165 (284)
T ss_pred             cccchheEEEcCCCCEEECCCccccccccCccc-----------------------------------------------
Confidence            999999999999999999999998433210000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC-
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~-  401 (517)
                                                  ........|+..|+|||++.+..++.++|||||||++|+|+++..|+.... 
T Consensus       166 ----------------------------~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~  217 (284)
T cd05079         166 ----------------------------YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMT  217 (284)
T ss_pred             ----------------------------eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccc
Confidence                                        000112357778999999998889999999999999999999877653211 


Q ss_pred             -------------hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 -------------NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 -------------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                                   ...............+...       ..+..+.+||.+||+.||++||++.    ++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rpt~~----~il~  278 (284)
T cd05079         218 LFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPP-------NCPEEVYQLMRKCWEFQPSKRTTFQ----NLIE  278 (284)
T ss_pred             hhhhhcccccccccHHHHHHHHHcCccCCCCC-------CCCHHHHHHHHHHccCCcccCcCHH----HHHH
Confidence                         1111111122111111111       1223589999999999999999997    6664

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=6.4e-39  Score=309.57  Aligned_cols=255  Identities=25%  Similarity=0.341  Sum_probs=200.0

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      +++++.||.|+||.||+|++..... .....||+|++......  .....+..|+.+++.++|+||+++++++.+.+..|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   77 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSG-EKEVEVAVKTLKEDADE--QQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLM   77 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCC-CCCceEEEEEccCCCCh--HHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeE
Confidence            4678899999999999999986321 13488999999755322  24556777999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      ++|||+++++|.+++.......+++..                            +..++.||+.||+|||++|++||||
T Consensus        78 ~i~e~~~~~~l~~~~~~~~~~~~~~~~----------------------------~~~~~~ql~~~l~~lh~~~~~h~dl  129 (258)
T smart00219       78 IVMEYMEGGDLLDYLRKNRPKELSLSD----------------------------LLSFALQIARGMEYLESKNFIHRDL  129 (258)
T ss_pred             EEEeccCCCCHHHHHHhhhhccCCHHH----------------------------HHHHHHHHHHHHHHHhcCCeeeccc
Confidence            999999999999998764322232222                            2367899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      ||+||+++.++.++|+|||+++.......                                                   
T Consensus       130 ~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  158 (258)
T smart00219      130 AARNCLVGENLVVKISDFGLSRDLYDDDY---------------------------------------------------  158 (258)
T ss_pred             ccceEEEccCCeEEEcccCCceecccccc---------------------------------------------------
Confidence            99999999999999999999844321100                                                   


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEK  404 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~  404 (517)
                                                .......+++.|+|||.+.+..++.++|||||||++|+|++ |.+||...+...
T Consensus       159 --------------------------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~  212 (258)
T smart00219      159 --------------------------YKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEE  212 (258)
T ss_pred             --------------------------cccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence                                      00001126789999999988889999999999999999998 899998877777


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ....+..........  .      .+.++.+++.+||..||++|||+.    |+++
T Consensus       213 ~~~~~~~~~~~~~~~--~------~~~~~~~~i~~~l~~~p~~Rpt~~----~ll~  256 (258)
T smart00219      213 VLEYLKKGYRLPKPE--N------CPPEIYKLMLQCWAEDPEDRPTFS----ELVE  256 (258)
T ss_pred             HHHHHhcCCCCCCCC--c------CCHHHHHHHHHHCcCChhhCcCHH----HHHh
Confidence            777766554322111  1      223589999999999999999997    7764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=9.7e-39  Score=307.30  Aligned_cols=241  Identities=22%  Similarity=0.298  Sum_probs=186.0

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      +.||+|+||.||+|...      .+..+|+|++......  .....+.+|+.+++.++||||+++++++...+..|+|||
T Consensus         1 ~~ig~g~~g~vy~~~~~------~~~~~a~K~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   72 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK------DKTPVAVKTCKEDLPQ--ELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVME   72 (250)
T ss_pred             CccCCCCCceEEEEEec------CCcEEEEEecCCcCCH--HHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEE
Confidence            36999999999999864      3568999998654321  223356779999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |+++++|.+++.... ..+...                            .+..++.|++.||.|||++|++||||||+|
T Consensus        73 ~~~~~~L~~~~~~~~-~~~~~~----------------------------~~~~~~~~i~~~l~~lH~~~~~H~dl~p~n  123 (250)
T cd05085          73 LVPGGDFLSFLRKKK-DELKTK----------------------------QLVKFALDAAAGMAYLESKNCIHRDLAARN  123 (250)
T ss_pred             CCCCCcHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeecccChhe
Confidence            999999999886532 112211                            123677899999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      |+++.++.+||+|||++.......                                                        
T Consensus       124 ili~~~~~~~l~d~g~~~~~~~~~--------------------------------------------------------  147 (250)
T cd05085         124 CLVGENNVLKISDFGMSRQEDDGI--------------------------------------------------------  147 (250)
T ss_pred             EEEcCCCeEEECCCccceeccccc--------------------------------------------------------
Confidence            999999999999999873221000                                                        


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........++..|+|||++.+..++.++|||||||++|+|++ |..||.+.........
T Consensus       148 ---------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~  206 (250)
T cd05085         148 ---------------------YSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQ  206 (250)
T ss_pred             ---------------------cccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence                                 000011134567999999988889999999999999999998 9999998877666666


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +......  ....      ..+.++.+|+.+||..+|++||++.
T Consensus       207 ~~~~~~~--~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~  242 (250)
T cd05085         207 VEKGYRM--SCPQ------KCPDDVYKVMQRCWDYKPENRPKFS  242 (250)
T ss_pred             HHcCCCC--CCCC------CCCHHHHHHHHHHcccCcccCCCHH
Confidence            5543211  1111      1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=5.8e-39  Score=312.79  Aligned_cols=257  Identities=21%  Similarity=0.262  Sum_probs=187.8

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|++.+..   ....+|+|.+.....  ......+..|+.++.++ +||||+++++++...+..|+||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~---~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDG---LRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCC---CeeEEEEEEccccCC--HHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEE
Confidence            36899999999999987621   123578888864211  13334666799999999 8999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+++|+|.+++..............              ............++.++.|++.||+|||++|++||||||+
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~  141 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAI--------------ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAAR  141 (270)
T ss_pred             EeCCCCcHHHHHHhcccccccccccc--------------ccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccc
Confidence            99999999999876432111000000              0000011223334578999999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||++......                                                        
T Consensus       142 nili~~~~~~kl~dfgl~~~~~~~--------------------------------------------------------  165 (270)
T cd05047         142 NILVGENYVAKIADFGLSRGQEVY--------------------------------------------------------  165 (270)
T ss_pred             eEEEcCCCeEEECCCCCccccchh--------------------------------------------------------
Confidence            999999999999999987311100                                                        


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLI  407 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~  407 (517)
                                             .......++..|+|||++.+..++.++|||||||++|||++ |..||.+.+..+...
T Consensus       166 -----------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~  222 (270)
T cd05047         166 -----------------------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYE  222 (270)
T ss_pred             -----------------------hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHH
Confidence                                   00001124567999999988889999999999999999997 999998877776666


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+..... .+. ..      ....++.+|+.+||..||.+||++.
T Consensus       223 ~~~~~~~-~~~-~~------~~~~~~~~li~~~l~~~p~~Rps~~  259 (270)
T cd05047         223 KLPQGYR-LEK-PL------NCDDEVYDLMRQCWREKPYERPSFA  259 (270)
T ss_pred             HHhCCCC-CCC-CC------cCCHHHHHHHHHHcccChhhCCCHH
Confidence            6544321 111 11      1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=2.2e-40  Score=323.61  Aligned_cols=270  Identities=25%  Similarity=0.359  Sum_probs=212.4

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC------CC
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD------HP  149 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~------Hp  149 (517)
                      ..-+++..++|.+....|+|-||+|..|.+..     .+..||||+|..+...    .+.=.+|++||++|+      --
T Consensus       424 v~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~-----r~~~vAiKIIRnNE~M----~KtGl~EleiLkKL~~AD~Edk~  494 (752)
T KOG0670|consen  424 VRIGELLDSRYEVQGYTGKGVFSTVVRARDQA-----RGQEVAIKIIRNNEVM----HKTGLKELEILKKLNDADPEDKF  494 (752)
T ss_pred             EehhhhhcceeEEEeccccceeeeeeeccccC-----CCCeeEEEEeecchHH----hhhhhHHHHHHHHhhccCchhhh
Confidence            33445667899999999999999999999887     4568999999877543    233345999999994      34


Q ss_pred             CccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          150 FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       150 nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      |+++|+-.|...+++|||+|-+ ..+|.+.+...+. ..++                          ....+|.|+.||.
T Consensus       495 Hclrl~r~F~hknHLClVFE~L-slNLRevLKKyG~-nvGL--------------------------~ikaVRsYaqQLf  546 (752)
T KOG0670|consen  495 HCLRLFRHFKHKNHLCLVFEPL-SLNLREVLKKYGR-NVGL--------------------------HIKAVRSYAQQLF  546 (752)
T ss_pred             HHHHHHHHhhhcceeEEEehhh-hchHHHHHHHhCc-ccce--------------------------eehHHHHHHHHHH
Confidence            8999999999999999999999 6799999987542 2221                          1123468999999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      .||..|-..||+|.||||+|||+++. ..+||||||.|.....                                     
T Consensus       547 lALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~e-------------------------------------  589 (752)
T KOG0670|consen  547 LALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASE-------------------------------------  589 (752)
T ss_pred             HHHHHHHhcCeeecccCccceEeccCcceeeeccCcccccccc-------------------------------------
Confidence            99999999999999999999999865 4789999998732221                                     


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~  388 (517)
                                                                 ...+.+.-+..|.|||++.|.+|+...|+||+||+||
T Consensus       590 -------------------------------------------neitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLY  626 (752)
T KOG0670|consen  590 -------------------------------------------NEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLY  626 (752)
T ss_pred             -------------------------------------------ccccHHHHHHhccCcceeecCcccCCccceeeceeeE
Confidence                                                       1122334567899999999999999999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCC------------------------------------------------
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIG------------------------------------------------  420 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~------------------------------------------------  420 (517)
                      ||.||+..|.|.++..++...+.....+|...                                                
T Consensus       627 ElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~  706 (752)
T KOG0670|consen  627 ELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELI  706 (752)
T ss_pred             EeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHh
Confidence            99999999999988877765544333333211                                                


Q ss_pred             ---CCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          421 ---VSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       421 ---~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                         .....+.....++++||.+||..||++|+|..    ++|+||||.+
T Consensus       707 ~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~n----qAL~HpFi~~  751 (752)
T KOG0670|consen  707 AVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVN----QALKHPFITE  751 (752)
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHH----HHhcCCcccC
Confidence               01122234455789999999999999999998    9999999974

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.2e-38  Score=308.96  Aligned_cols=252  Identities=19%  Similarity=0.237  Sum_probs=186.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee-cCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE-ASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-~~~~~~lV~  168 (517)
                      +.||+|+||.||+|.+.....  ....+|+|.+.....  ......+.+|+.+++.++||||+++++++. .++..|+||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~--~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   76 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDG--QKIHCAVKSLNRITD--LEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVL   76 (262)
T ss_pred             CcccccCCceEEEEEEecCCC--ceEEEEEEecCccCC--HHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEE
Confidence            368999999999999764321  346799998854211  123456667999999999999999999764 566789999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+.+|+|.+++...... ...                            ..+..++.||+.||+|||+++|+||||||+
T Consensus        77 e~~~~~~L~~~~~~~~~~-~~~----------------------------~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~  127 (262)
T cd05058          77 PYMKHGDLRNFIRSETHN-PTV----------------------------KDLIGFGLQVAKGMEYLASKKFVHRDLAAR  127 (262)
T ss_pred             ecCCCCCHHHHHHhcCCC-CCH----------------------------HHHHHHHHHHHHHHHHHHhCCccccccCcc
Confidence            999999999998754211 111                            112367889999999999999999999999


Q ss_pred             ceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccc
Q 010140          249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIRE  328 (517)
Q Consensus       249 NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (517)
                      |||++.++.+||+|||+++........                                                     
T Consensus       128 nili~~~~~~kl~dfg~~~~~~~~~~~-----------------------------------------------------  154 (262)
T cd05058         128 NCMLDESFTVKVADFGLARDIYDKEYY-----------------------------------------------------  154 (262)
T ss_pred             eEEEcCCCcEEECCccccccccCCcce-----------------------------------------------------
Confidence            999999999999999998432210000                                                     


Q ss_pred             ccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHH
Q 010140          329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLI  407 (517)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~  407 (517)
                                           .........++..|+|||.+.+..++.++|||||||++|||++ |.+||...+..+...
T Consensus       155 ---------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~  213 (262)
T cd05058         155 ---------------------SVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITV  213 (262)
T ss_pred             ---------------------eecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence                                 0000112246778999999988889999999999999999999 567787777666665


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+.........  ..      .+..+.+++.+||..+|++||++.    ++++
T Consensus       214 ~~~~~~~~~~~--~~------~~~~~~~li~~cl~~~p~~Rp~~~----~il~  254 (262)
T cd05058         214 YLLQGRRLLQP--EY------CPDPLYEVMLSCWHPKPEMRPTFS----ELVS  254 (262)
T ss_pred             HHhcCCCCCCC--Cc------CCHHHHHHHHHHcCCChhhCCCHH----HHHH
Confidence            55543221111  11      112489999999999999999997    6554

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=8.1e-39  Score=310.44  Aligned_cols=244  Identities=20%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             eeeeccceeEEEEEEEecCCC-------CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           90 RRLGSGDIGNVYLCQIRNPMV-------GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~-------~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +.||+|+||.||+|+......       ......+|+|++.....   .....+..|+.+++.++||||+++++++..+.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHR---DISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhh---hHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            368999999999998643211       11334689998875432   33445667899999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..++||||+++|+|..++.... ..+....                            ...++.||+.||+|||++||+|
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~ivH  128 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRKS-DVLTTPW----------------------------KFKVAKQLASALSYLEDKDLVH  128 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHhhhCCeEC
Confidence            9999999999999988776432 1222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCc-------EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          243 RDLKPENVLVREDGH-------IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       243 rDLKp~NILl~~~~~-------vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |||||+|||++.++.       ++++|||++.....                                            
T Consensus       129 ~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~--------------------------------------------  164 (262)
T cd05077         129 GNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLS--------------------------------------------  164 (262)
T ss_pred             CCCCcccEEEecCCccCCCCceeEeCCCCCCccccC--------------------------------------------
Confidence            999999999987664       89999998732110                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-CCCCCccchHHHHHHHHHHHh-hC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML-YG  393 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-~~~~~~~~DiWSlGvil~ell-tG  393 (517)
                                                            .....|+..|+|||.+. +..++.++|||||||++|||+ .|
T Consensus       165 --------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~  206 (262)
T cd05077         165 --------------------------------------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNG  206 (262)
T ss_pred             --------------------------------------cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCC
Confidence                                                  11235788899999987 456899999999999999998 58


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..||......+.. ...........   +.      ..++.+||.+||+.||.+||++.    +|+++
T Consensus       207 ~~p~~~~~~~~~~-~~~~~~~~~~~---~~------~~~~~~li~~cl~~dp~~Rp~~~----~il~~  260 (262)
T cd05077         207 EIPLKDKTLAEKE-RFYEGQCMLVT---PS------CKELADLMTHCMNYDPNQRPFFR----AIMRD  260 (262)
T ss_pred             CCCCCCcchhHHH-HHHhcCccCCC---CC------hHHHHHHHHHHcCCChhhCcCHH----HHHHh
Confidence            8998776544332 22222221111   11      12489999999999999999997    88764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=5e-39  Score=312.83  Aligned_cols=254  Identities=22%  Similarity=0.306  Sum_probs=190.1

Q ss_pred             eeeeccceeEEEEEEEecCC-CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      +.||+|+||.||+|+..... .+..++.+|||.+.+...  ......+.+|+.+++.++||||+++++++...+..|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT--DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc--hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            36999999999999987532 112346899998865421  123456677999999999999999999999999999999


Q ss_pred             EecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC
Q 010140          169 EYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE  248 (517)
Q Consensus       169 E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~  248 (517)
                      ||+++++|.+++..........                       .......+..++.||+.||+|||+++++|+||||+
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~  135 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGP-----------------------PLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAAR  135 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCC-----------------------ccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChh
Confidence            9999999999987642211000                       00111223467899999999999999999999999


Q ss_pred             ceEEccCC-----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          249 NVLVREDG-----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       249 NILl~~~~-----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||+++.++     .++|+|||+++.+.....                                                 
T Consensus       136 nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~-------------------------------------------------  166 (269)
T cd05044         136 NCLVSEKGYDADRVVKIGDFGLARDIYKSDY-------------------------------------------------  166 (269)
T ss_pred             eEEEecCCCCCCcceEECCcccccccccccc-------------------------------------------------
Confidence            99999877     899999999843221000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~  402 (517)
                                                 ........++..|+|||++.+..++.++|||||||++|+|++ |..||...+.
T Consensus       167 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~  219 (269)
T cd05044         167 ---------------------------YRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN  219 (269)
T ss_pred             ---------------------------cccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH
Confidence                                       000112245678999999998889999999999999999998 9999988777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+....+...... .. ..      ..+..+.+||.+||..+|.+||++.
T Consensus       220 ~~~~~~~~~~~~~-~~-~~------~~~~~~~~li~~~l~~~p~~Rp~~~  261 (269)
T cd05044         220 QEVLQHVTAGGRL-QK-PE------NCPDKIYQLMTNCWAQDPSERPTFD  261 (269)
T ss_pred             HHHHHHHhcCCcc-CC-cc------cchHHHHHHHHHHcCCCcccCCCHH
Confidence            6666655433211 11 11      1123589999999999999999997

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.8e-38  Score=309.07  Aligned_cols=248  Identities=18%  Similarity=0.254  Sum_probs=182.1

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEe
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEY  170 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~  170 (517)
                      .||+|+||.||+|+.....   ....+++|.+.....  ......+.+|+.+++.++||||+++++.+......|+||||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~---~~~~~~~k~~~~~~~--~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~   76 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDT---GVARVVVKELKANAS--SKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEY   76 (268)
T ss_pred             cCCCCcCceEEEEEEEcCC---CcceEEEEEecCCCC--hHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEec
Confidence            6999999999999865421   234567777654322  12345677799999999999999999999999999999999


Q ss_pred             cCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCce
Q 010140          171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV  250 (517)
Q Consensus       171 ~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NI  250 (517)
                      +++|+|.+++...........                          ...++.++.||+.||+|||+++|+||||||+||
T Consensus        77 ~~~~~L~~~l~~~~~~~~~~~--------------------------~~~~~~~~~~i~~al~~lH~~~i~H~dikp~ni  130 (268)
T cd05086          77 CELGDLKSYLSQEQWHRRNSQ--------------------------LLLLQRMACEIAAGVTHMHKHNFLHSDLALRNC  130 (268)
T ss_pred             CCCCcHHHHHHhhhccccccc--------------------------HHHHHHHHHHHHHHHHHHHHCCeeccCCccceE
Confidence            999999999876422111111                          111236789999999999999999999999999


Q ss_pred             EEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 010140          251 LVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQV  330 (517)
Q Consensus       251 Ll~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (517)
                      |++.++.+||+|||++.......                                                         
T Consensus       131 l~~~~~~~~l~Dfg~~~~~~~~~---------------------------------------------------------  153 (268)
T cd05086         131 FLTSDLTVKVGDYGIGPSRYKED---------------------------------------------------------  153 (268)
T ss_pred             EEcCCccEEecccccccccCcch---------------------------------------------------------
Confidence            99999999999999873211000                                                         


Q ss_pred             CCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-------CCCCccchHHHHHHHHHHHhh-CCCCCCCCCh
Q 010140          331 DGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-------QGHGSAVDWWTLGVFLYEMLY-GTTPFKGENN  402 (517)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-------~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~  402 (517)
                                         .........|+..|+|||++..       ..++.++|||||||++|||++ |..||...+.
T Consensus       154 -------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~  214 (268)
T cd05086         154 -------------------YIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD  214 (268)
T ss_pred             -------------------hhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH
Confidence                               0001123468889999999853       235779999999999999997 5789988777


Q ss_pred             HHHHHHHhcCCC-CCC--CCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          403 EKTLINILKKPL-TFP--RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       403 ~~~~~~i~~~~~-~~p--~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+.+..+..... ..+  ......      ...+.++|..|| .+|++||++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~c~-~~P~~Rp~~~  260 (268)
T cd05086         215 REVLNHVIKDQQVKLFKPQLELPY------SERWYEVLQFCW-LSPEKRATAE  260 (268)
T ss_pred             HHHHHHHHhhcccccCCCccCCCC------cHHHHHHHHHHh-hCcccCCCHH
Confidence            776666554322 211  111111      124789999999 6899999997

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.3e-38  Score=315.86  Aligned_cols=255  Identities=21%  Similarity=0.257  Sum_probs=191.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|+..+.||+|+||.||+|.+...... ....+|+|.+......  .....+.+|+.+++.++||||+++++++..
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~l~h~niv~~~~~~~~   80 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGET-VKIPVAIKILNETTGP--KANVEFMDEALIMASMDHPHLVRLLGVCLS   80 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCc-ceeeEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCcccEEEEEcC
Confidence            3457899999999999999999998763222 2346899988654221  223356679999999999999999998865


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      . ..++|+||+++|+|.+++.... ..++...                            +..++.||+.||+|||++||
T Consensus        81 ~-~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~~L~~LH~~~i  130 (303)
T cd05110          81 P-TIQLVTQLMPHGCLLDYVHEHK-DNIGSQL----------------------------LLNWCVQIAKGMMYLEERRL  130 (303)
T ss_pred             C-CceeeehhcCCCCHHHHHHhcc-cCCCHHH----------------------------HHHHHHHHHHHHHHHhhcCe
Confidence            4 4679999999999999886542 1122211                            13678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.+.....                                              
T Consensus       131 vH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~----------------------------------------------  164 (303)
T cd05110         131 VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK----------------------------------------------  164 (303)
T ss_pred             eccccccceeeecCCCceEEccccccccccCccc----------------------------------------------
Confidence            9999999999999999999999999854321000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........++..|+|||.+.+..++.++|||||||++|||++ |..||.+
T Consensus       165 ------------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~  214 (303)
T cd05110         165 ------------------------------EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDG  214 (303)
T ss_pred             ------------------------------ccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          000112245778999999998889999999999999999997 9999987


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .........+... ...+....       ...++.++|.+||..||++||++.
T Consensus       215 ~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~li~~c~~~~p~~Rp~~~  259 (303)
T cd05110         215 IPTREIPDLLEKG-ERLPQPPI-------CTIDVYMVMVKCWMIDADSRPKFK  259 (303)
T ss_pred             CCHHHHHHHHHCC-CCCCCCCC-------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            7655444333332 22222111       112589999999999999999997

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.3e-38  Score=311.22  Aligned_cols=243  Identities=23%  Similarity=0.281  Sum_probs=182.1

Q ss_pred             eeeccceeEEEEEEEecCC-------------------CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc
Q 010140           91 RLGSGDIGNVYLCQIRNPM-------------------VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL  151 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~-------------------~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI  151 (517)
                      +||+|+||.||+|......                   .......||+|++.....   .....+.+|+.+++.++||||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~l~h~ni   78 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHR---DIALAFFETASLMSQVSHIHL   78 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHH---HHHHHHHHHHHHHhcCCCCCe
Confidence            6999999999999864211                   011234689999876532   233456668899999999999


Q ss_pred             cceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       152 v~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      +++++++..+...|+||||+++|+|..++.... ..++....                            ..++.||+.|
T Consensus        79 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~----------------------------~~i~~qi~~~  129 (274)
T cd05076          79 AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWK----------------------------ITVAQQLASA  129 (274)
T ss_pred             eeEEEEEEeCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHH----------------------------HHHHHHHHHH
Confidence            999999999999999999999999988876532 22332222                            2678999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCC-------cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDG-------HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVL  304 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~-------~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (517)
                      |+|||++||+||||||+|||++..+       .+|++|||++.....                                 
T Consensus       130 l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~---------------------------------  176 (274)
T cd05076         130 LSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALS---------------------------------  176 (274)
T ss_pred             HHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccccc---------------------------------
Confidence            9999999999999999999997644       489999998632110                                 


Q ss_pred             ccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHH
Q 010140          305 SCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTL  383 (517)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSl  383 (517)
                                                                       .....++..|+|||.+.+ ..++.++|||||
T Consensus       177 -------------------------------------------------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~sl  207 (274)
T cd05076         177 -------------------------------------------------REERVERIPWIAPECVPGGNSLSTAADKWSF  207 (274)
T ss_pred             -------------------------------------------------ccccccCCcccCchhhcCCCCCCcHHHHHHH
Confidence                                                             011246788999999876 458999999999


Q ss_pred             HHHHHHHh-hCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          384 GVFLYEML-YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       384 Gvil~ell-tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||++|||+ +|..||.+....+... ........+...         ..++.+||.+||+.+|++||++.    +++++
T Consensus       208 G~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~li~~cl~~~p~~Rps~~----~il~~  272 (274)
T cd05076         208 GTTLLEICFDGEVPLKERTPSEKER-FYEKKHRLPEPS---------CKELATLISQCLTYEPTQRPSFR----TILRD  272 (274)
T ss_pred             HHHHHHHHhCCCCCccccChHHHHH-HHHhccCCCCCC---------ChHHHHHHHHHcccChhhCcCHH----HHHHh
Confidence            99999995 7999998776544332 222222222211         12489999999999999999997    77764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.2e-38  Score=309.76  Aligned_cols=258  Identities=24%  Similarity=0.326  Sum_probs=187.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--C
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--S  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~  161 (517)
                      .+|++++.||+|+||.||+|...... ...++.||+|.+....   ......+.+|+.+++.++||||+++++++..  .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQ-DNTGEVVAVKKLQHST---AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   79 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCc-CCCCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC
Confidence            57999999999999999999864211 1256789999986543   2334567779999999999999999997643  4


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ..+|+||||+++|+|.+++.... ..+....                            ...++.||+.||+|||++||+
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~----------------------------~~~~~~~l~~aL~~LH~~~i~  130 (284)
T cd05081          80 RNLRLVMEYLPYGSLRDYLQKHR-ERLDHRK----------------------------LLLYASQICKGMEYLGSKRYV  130 (284)
T ss_pred             CceEEEEEecCCCCHHHHHHhcC-cCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCce
Confidence            56899999999999999886532 1122222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++..........                                             
T Consensus       131 H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~---------------------------------------------  165 (284)
T cd05081         131 HRDLATRNILVESENRVKIGDFGLTKVLPQDKEYY---------------------------------------------  165 (284)
T ss_pred             eccCCHhhEEECCCCeEEECCCcccccccCCCcce---------------------------------------------
Confidence            99999999999999999999999985432110000                                             


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                    .......++..|+|||++.+..++.++|||||||++|||++|..|+....
T Consensus       166 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~  215 (284)
T cd05081         166 ------------------------------KVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP  215 (284)
T ss_pred             ------------------------------eecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc
Confidence                                          00001124456999999998889999999999999999999877764332


Q ss_pred             hHH---------------HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEK---------------TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~---------------~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ...               .+..++......+...       ....++.+||.+||..+|++|||+.    |+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~cl~~~p~~Rpt~~----ei~~  278 (284)
T cd05081         216 AEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPP-------GCPAEIYAIMKECWNNDPSQRPSFS----ELAL  278 (284)
T ss_pred             hhhhhhcccccccccchHHHHHHHhcCCcCCCCC-------CCCHHHHHHHHHHccCChhhCCCHH----HHHH
Confidence            110               0111222221111111       1123589999999999999999997    6554

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=5.1e-39  Score=307.10  Aligned_cols=233  Identities=28%  Similarity=0.414  Sum_probs=179.8

Q ss_pred             cceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEecCCC
Q 010140           95 GDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG  174 (517)
Q Consensus        95 G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg  174 (517)
                      |.||.||+|+++.     +++.||+|.+......        ..|...+....||||+++++++.+.+..|+||||++||
T Consensus         4 g~~~~v~~~~~~~-----~~~~~~~K~i~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   70 (237)
T cd05576           4 GVIDKVLLVMDTR-----TQQTFILKGLRKSSEY--------SRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGG   70 (237)
T ss_pred             cccceEEEEEEcc-----CCcEEEEEeecchhhh--------hhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCC
Confidence            9999999999987     6788999999765321        12444555567999999999999999999999999999


Q ss_pred             chhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEcc
Q 010140          175 DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE  254 (517)
Q Consensus       175 ~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~  254 (517)
                      +|.+++....  .++...                            +..++.||+.||+|||++||+||||||+||+++.
T Consensus        71 ~L~~~l~~~~--~l~~~~----------------------------~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~  120 (237)
T cd05576          71 KLWSHISKFL--NIPEEC----------------------------VKRWAAEMVVALDALHREGIVCRDLNPNNILLDD  120 (237)
T ss_pred             CHHHHHHHhc--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcC
Confidence            9999886542  222222                            2367899999999999999999999999999999


Q ss_pred             CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCC
Q 010140          255 DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDH  334 (517)
Q Consensus       255 ~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (517)
                      ++.++|+|||++.....                                                               
T Consensus       121 ~~~~~l~df~~~~~~~~---------------------------------------------------------------  137 (237)
T cd05576         121 RGHIQLTYFSRWSEVED---------------------------------------------------------------  137 (237)
T ss_pred             CCCEEEecccchhcccc---------------------------------------------------------------
Confidence            99999999998632210                                                               


Q ss_pred             CCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCC
Q 010140          335 HDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL  414 (517)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~  414 (517)
                                        ......++..|+|||.+.+..++.++||||+||++|||++|..||........    .....
T Consensus       138 ------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~~----~~~~~  195 (237)
T cd05576         138 ------------------SCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGIN----THTTL  195 (237)
T ss_pred             ------------------ccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhcc----ccccc
Confidence                              01122456789999999888899999999999999999999998764321100    00011


Q ss_pred             CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCc
Q 010140          415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFF  464 (517)
Q Consensus       415 ~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f  464 (517)
                      ..|.         .....+++||.+||+.||++|+++. ..++++++||||
T Consensus       196 ~~~~---------~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         196 NIPE---------WVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             CCcc---------cCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            1111         1123589999999999999999974 235799999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-38  Score=304.96  Aligned_cols=246  Identities=24%  Similarity=0.323  Sum_probs=189.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      ++||+|+||.||+|.+..      ++.||+|.+......  .....+..|+.++++++||||+++++++.+....|+|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~------~~~v~~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   72 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG------NTEVAVKTCRSTLPP--DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVME   72 (251)
T ss_pred             CccccCCCceEEEEEEeC------CCcEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEE
Confidence            469999999999998763      578999998754332  334567779999999999999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      |++|++|.+++..... .+...                            .+..++.|++.||+|||++|++||||||+|
T Consensus        73 ~~~~~~l~~~l~~~~~-~~~~~----------------------------~~~~~~~~~~~~l~~lH~~~i~h~di~p~n  123 (251)
T cd05041          73 LVPGGSLLTFLRKKKN-RLTVK----------------------------KLLQMSLDAAAGMEYLESKNCIHRDLAARN  123 (251)
T ss_pred             cCCCCcHHHHHHhcCC-CCCHH----------------------------HHHHHHHHHHHHHHHHHhCCEehhhcCcce
Confidence            9999999998865321 12211                            123678899999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+++.......                                                       
T Consensus       124 ili~~~~~~~l~d~g~~~~~~~~~~-------------------------------------------------------  148 (251)
T cd05041         124 CLVGENNVLKISDFGMSREEEGGIY-------------------------------------------------------  148 (251)
T ss_pred             EEEcCCCcEEEeeccccccccCCcc-------------------------------------------------------
Confidence            9999999999999999843210000                                                       


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...........
T Consensus       149 ---------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~  207 (251)
T cd05041         149 ---------------------TVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRER  207 (251)
T ss_pred             ---------------------eeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHH
Confidence                                 000001123567999999998889999999999999999998 8999988776665555


Q ss_pred             HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       409 i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +.... ..+...       ..+.++.+||.+||..+|.+||++.    |+++
T Consensus       208 ~~~~~-~~~~~~-------~~~~~~~~li~~~l~~~p~~Rp~~~----ell~  247 (251)
T cd05041         208 IESGY-RMPAPQ-------LCPEEIYRLMLQCWAYDPENRPSFS----EIYN  247 (251)
T ss_pred             HhcCC-CCCCCc-------cCCHHHHHHHHHHhccChhhCcCHH----HHHH
Confidence            54432 111110       1123589999999999999999997    7664

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-39  Score=317.01  Aligned_cols=255  Identities=21%  Similarity=0.244  Sum_probs=202.7

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++..+...+.++||+|.||.|.+|....      ...||+|.++.+...  +....|.+|+++|.+|+|||||+|+++|.
T Consensus       534 EfPRs~L~~~ekiGeGqFGEVhLCeveg------~lkVAVK~Lr~~a~~--~~r~~F~kEIkiLsqLkhPNIveLvGVC~  605 (807)
T KOG1094|consen  534 EFPRSRLRFKEKIGEGQFGEVHLCEVEG------PLKVAVKILRPDATK--NARNDFLKEIKILSRLKHPNIVELLGVCV  605 (807)
T ss_pred             hcchhheehhhhhcCcccceeEEEEecC------ceEEEEeecCcccch--hHHHHHHHHHHHHhccCCCCeeEEEeeee
Confidence            3556778999999999999999998764      478999999877543  44577888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .++.+|+||||++.|||.+++..+....  .....                          ...|+.||+.|++||.+.+
T Consensus       606 ~DePicmI~EYmEnGDLnqFl~aheapt--~~t~~--------------------------~vsi~tqiasgmaYLes~n  657 (807)
T KOG1094|consen  606 QDDPLCMITEYMENGDLNQFLSAHELPT--AETAP--------------------------GVSICTQIASGMAYLESLN  657 (807)
T ss_pred             cCCchHHHHHHHhcCcHHHHHHhccCcc--cccch--------------------------hHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998863222  11111                          1258999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +|||||.+.|||++.++++||+|||+++.+...+.                                             
T Consensus       658 fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~y---------------------------------------------  692 (807)
T KOG1094|consen  658 FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDY---------------------------------------------  692 (807)
T ss_pred             hhhccccccceeecCcccEEecCcccccccccCCc---------------------------------------------
Confidence            99999999999999999999999999864332111                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHh--hCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML--YGTTPF  397 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ell--tG~~Pf  397 (517)
                                                     .......+-...|||+|.+....+++++|+|+||+++||++  +.+.||
T Consensus       693 -------------------------------y~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py  741 (807)
T KOG1094|consen  693 -------------------------------YRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPY  741 (807)
T ss_pred             -------------------------------eeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCch
Confidence                                           11122345677999999999999999999999999999987  589999


Q ss_pred             CCCChHHHHHHHhcC---CC--CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          398 KGENNEKTLINILKK---PL--TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~---~~--~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ...++++.......-   +.  ..+....      -++..+.+||.+||..|-.+||+++
T Consensus       742 ~~lt~e~vven~~~~~~~~~~~~~l~~P~------~cp~~lyelml~Cw~~es~~RPsFe  795 (807)
T KOG1094|consen  742 SQLTDEQVVENAGEFFRDQGRQVVLSRPP------ACPQGLYELMLRCWRRESEQRPSFE  795 (807)
T ss_pred             hhhhHHHHHHhhhhhcCCCCcceeccCCC------cCcHHHHHHHHHHhchhhhcCCCHH
Confidence            988887766655321   11  1111111      1222488999999999999999997

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-39  Score=328.44  Aligned_cols=249  Identities=34%  Similarity=0.513  Sum_probs=189.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc--
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH--  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--  162 (517)
                      -+...+.||+|+||.||+++++.     +++.||||.+++...  ....++..+|+++|++|+|||||+++++=+...  
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgrnke-----tG~~vAvK~~~~~~~--~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~   86 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGRNKE-----TGRLVAVKTFNKESS--LRPRERWCREIEILKKLNHPNIVKLFDIEETKFLG   86 (732)
T ss_pred             ceeehhhhcCCccceeeeecccc-----cccchhHHhhhhhcc--cchHHHHHHHHHHHHHcCchhhhhhcccCCccccC
Confidence            36677889999999999999887     889999999987542  244566677999999999999999999776543  


Q ss_pred             ----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          163 ----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       163 ----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                          ...+|||||.||||+..+++.. +..++++-.+                          +.++..++.||.|||++
T Consensus        87 ~~~~~~vlvmEyC~gGsL~~~L~~PE-N~~GLpE~e~--------------------------l~lL~d~~~al~~LrEn  139 (732)
T KOG4250|consen   87 LVTRLPVLVMEYCSGGSLRKVLNSPE-NAYGLPESEF--------------------------LDLLSDLVSALRHLREN  139 (732)
T ss_pred             cccccceEEEeecCCCcHHHHhcCcc-cccCCCHHHH--------------------------HHHHHHHHHHHHHHHHc
Confidence                4689999999999999987642 2333333322                          25678999999999999


Q ss_pred             CceeccCCCCceEEc--cCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          239 GIVYRDLKPENVLVR--EDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       239 ~iiHrDLKp~NILl~--~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      |||||||||.||++-  .+|  .-||+|||.|+.+++                                           
T Consensus       140 ~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d-------------------------------------------  176 (732)
T KOG4250|consen  140 GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDD-------------------------------------------  176 (732)
T ss_pred             CceeccCCCCcEEEeecCCCceEEeeecccccccCCC-------------------------------------------
Confidence            999999999999984  334  479999999965543                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG  393 (517)
                                                          +....+++||+.|.+||++.. ..|+..+|.|||||++|+++||
T Consensus       177 ------------------------------------~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG  220 (732)
T KOG4250|consen  177 ------------------------------------NSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATG  220 (732)
T ss_pred             ------------------------------------CCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhcc
Confidence                                                223467899999999999995 7799999999999999999999


Q ss_pred             CCCCCCC----ChHHHHHHHhcCCC-------------------CCCCCCCCCchhHHhhhhHHHHHHHhccCCccccc
Q 010140          394 TTPFKGE----NNEKTLINILKKPL-------------------TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI  449 (517)
Q Consensus       394 ~~Pf~~~----~~~~~~~~i~~~~~-------------------~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~  449 (517)
                      ..||...    +..+.+..+...+.                   .+|...... .  .....+-..+..+|..||++|.
T Consensus       221 ~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~~s~~lP~p~~Ls-~--~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  221 ELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVEWSSTLPQPNHLS-R--GLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             CCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCceeeeccCCCccccc-H--HHHhhhhHHHHHHHhhhHHHhC
Confidence            9999643    23345555543221                   111111111 1  1122466889999999999999

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.6e-38  Score=305.72  Aligned_cols=241  Identities=23%  Similarity=0.253  Sum_probs=182.8

Q ss_pred             eeeeccceeEEEEEEEecCCC-----CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           90 RRLGSGDIGNVYLCQIRNPMV-----GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~-----~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +.||+|+||.||+|.+.....     ......+++|++......    ...+.+|+.+++.++||||+++++++.. ...
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD----SLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh----HHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            469999999999999986320     112245788887654321    4566679999999999999999999887 778


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||+++|+|.+++..... .++....                            ..++.||+.||+|||++||+|||
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~----------------------------~~~~~~i~~~l~~LH~~~i~H~d  126 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHREKN-NVSLHWK----------------------------LDVAKQLASALHYLEDKKLVHGN  126 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhhcc-CCCHHHH----------------------------HHHHHHHHHHHHHHhhCCeeccc
Confidence            999999999999999876532 2222221                            36789999999999999999999


Q ss_pred             CCCCceEEccCC-------cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          245 LKPENVLVREDG-------HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       245 LKp~NILl~~~~-------~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      |||+|||++.++       .+||+|||++.....                                              
T Consensus       127 lkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~----------------------------------------------  160 (259)
T cd05037         127 VCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS----------------------------------------------  160 (259)
T ss_pred             CccceEEEecCccccCCceeEEeCCCCccccccc----------------------------------------------
Confidence            999999999887       799999999843210                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhh-CC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                          .....++..|+|||++.+.  .++.++|||||||++|+|++ |.
T Consensus       161 ------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~  204 (259)
T cd05037         161 ------------------------------------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGE  204 (259)
T ss_pred             ------------------------------------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCC
Confidence                                                0112466789999999877  68999999999999999999 68


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .||...+..+...... .....+....         ..+.+||.+||..+|.+||++.    ++++
T Consensus       205 ~p~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~li~~~l~~~p~~Rpt~~----~il~  256 (259)
T cd05037         205 EPLSTLSSSEKERFYQ-DQHRLPMPDC---------AELANLINQCWTYDPTKRPSFR----AILR  256 (259)
T ss_pred             CCcccCCchhHHHHHh-cCCCCCCCCc---------hHHHHHHHHHhccChhhCCCHH----HHHH
Confidence            8887765443333222 2211121111         2589999999999999999997    6654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=5.6e-38  Score=309.82  Aligned_cols=262  Identities=16%  Similarity=0.159  Sum_probs=180.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--HHH------HHhHHHHHHHHHHhcCCCCcc
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--IRK------KLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~~~------~~~~~~~E~~il~~l~HpnIv  152 (517)
                      +..++|++.+.||+|+||.||+|++.....  ....+|+|+.......  ...      .......+...+..++|+||+
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~   86 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHC--INNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIP   86 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcc--cccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCC
Confidence            445789999999999999999999876311  2456777764322110  000      011122234455667899999


Q ss_pred             ceeeeeecCc----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHH
Q 010140          153 TLYAEFEASH----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET  228 (517)
Q Consensus       153 ~l~~~~~~~~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi  228 (517)
                      ++++++....    ..+++||++ ..++.+.+....  ..+..                            .++.++.||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~----------------------------~~~~i~~qi  135 (294)
T PHA02882         87 KYYGCGSFKRCRMYYRFILLEKL-VENTKEIFKRIK--CKNKK----------------------------LIKNIMKDM  135 (294)
T ss_pred             cEEEeeeEecCCceEEEEEEehh-ccCHHHHHHhhc--cCCHH----------------------------HHHHHHHHH
Confidence            9998765433    457889988 446666554421  11111                            123678999


Q ss_pred             HHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       229 ~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      +.||+|||+++|+||||||+|||++.++.++|+|||+|+.+.......                                
T Consensus       136 ~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~--------------------------------  183 (294)
T PHA02882        136 LTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHI--------------------------------  183 (294)
T ss_pred             HHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCccc--------------------------------
Confidence            999999999999999999999999999999999999985543111000                                


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~  388 (517)
                                                             ...........||+.|+|||++.+..++.++|||||||++|
T Consensus       184 ---------------------------------------~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~  224 (294)
T PHA02882        184 ---------------------------------------EYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCML  224 (294)
T ss_pred             ---------------------------------------ccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHH
Confidence                                                   00001122346999999999999999999999999999999


Q ss_pred             HHhhCCCCCCCCCh-HHH--------HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          389 EMLYGTTPFKGENN-EKT--------LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       389 elltG~~Pf~~~~~-~~~--------~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      ||++|.+||.+... ...        ...+.......+.          ....+.+++..||..+|++||+..    +++
T Consensus       225 el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~rp~~~----~l~  290 (294)
T PHA02882        225 KWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKN----------ANKFIYDFIECVTKLSYEEKPDYD----ALI  290 (294)
T ss_pred             HHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCC----------CCHHHHHHHHHHHhCCCCCCCCHH----HHH
Confidence            99999999987743 221        1222222222211          112489999999999999999996    665


Q ss_pred             c
Q 010140          460 R  460 (517)
Q Consensus       460 ~  460 (517)
                      +
T Consensus       291 ~  291 (294)
T PHA02882        291 K  291 (294)
T ss_pred             H
Confidence            3

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=2.7e-38  Score=308.30  Aligned_cols=260  Identities=20%  Similarity=0.246  Sum_probs=192.8

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc---
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH---  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~---  162 (517)
                      |.+.+.||+|+||.||+|..+...  .+++.||||++..+... .....++.+|+.+++.++||||+++++++....   
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~--~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSED--GSFQKVAVKMLKADIFS-SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKG   77 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccC--CCceEEEEEEeccccCC-hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCC
Confidence            677889999999999999876421  15688999998754322 223456777999999999999999999885432   


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                         ..++++||+++|+|..++.......-..                        ......++.++.||+.||+|||++|
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------~l~~~~~~~~~~~i~~~l~~lH~~~  133 (273)
T cd05074          78 RLPIPMVILPFMKHGDLHTFLLMSRIGEEPF------------------------TLPLQTLVRFMIDIASGMEYLSSKN  133 (273)
T ss_pred             cccceEEEEecCCCCcHHHHHHHhcccCCCC------------------------CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence               2478999999999988775422110000                        0111223478899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+||+++.++.+||+|||+++.......                                             
T Consensus       134 i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------  168 (273)
T cd05074         134 FIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDY---------------------------------------------  168 (273)
T ss_pred             EeecccchhhEEEcCCCCEEECcccccccccCCcc---------------------------------------------
Confidence            99999999999999999999999999843221000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........+++.|++||.+.+..++.++|||||||++|+|++ |.+||.
T Consensus       169 -------------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~  217 (273)
T cd05074         169 -------------------------------YRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYA  217 (273)
T ss_pred             -------------------------------eecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCC
Confidence                                           000112235678999999998889999999999999999999 899998


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +.+..+....+.........  ..      ....+.+++.+||+.+|++||++.    ++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~l~~~~l~~~p~~Rps~~----~~~~  267 (273)
T cd05074         218 GVENSEIYNYLIKGNRLKQP--PD------CLEDVYELMCQCWSPEPKCRPSFQ----HLRD  267 (273)
T ss_pred             CCCHHHHHHHHHcCCcCCCC--CC------CCHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            88777666666554321111  11      123589999999999999999997    6554

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=320.17  Aligned_cols=281  Identities=25%  Similarity=0.339  Sum_probs=214.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..+...+.+.||.|.||.||+|......++ ..--||||..+.+...  ...+.|..|..+|+.++|||||+|+|++.+
T Consensus       386 l~Re~Itl~r~iG~GqFGdVy~gvYt~~~kg-e~iaVAvKtCK~d~t~--d~tekflqEa~iMrnfdHphIikLIGv~~e  462 (974)
T KOG4257|consen  386 LRRELITLKRLIGEGQFGDVYKGVYTDPEKG-ERIAVAVKTCKTDCTP--DDTEKFLQEASIMRNFDHPHIIKLIGVCVE  462 (974)
T ss_pred             eehhhccHHHhhcCCcccceeeeEecccccC-cceeeeeehhccCCCh--hhHHHHHHHHHHHHhCCCcchhheeeeeec
Confidence            3344556778999999999999998876443 4456999998875432  336778889999999999999999999875


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ...|||||+++-|.|..+++.... .++.  .                          .+..|+.||+.||+|||+.++
T Consensus       463 -~P~WivmEL~~~GELr~yLq~nk~-sL~l--~--------------------------tL~ly~~Qi~talaYLeSkrf  512 (974)
T KOG4257|consen  463 -QPMWIVMELAPLGELREYLQQNKD-SLPL--R--------------------------TLTLYCYQICTALAYLESKRF  512 (974)
T ss_pred             -cceeEEEecccchhHHHHHHhccc-cchH--H--------------------------HHHHHHHHHHHHHHHHHhhch
Confidence             578999999999999999987532 2221  1                          112688999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||..+|||+.....|||+|||+++.+....-+                                             
T Consensus       513 VHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yY---------------------------------------------  547 (974)
T KOG4257|consen  513 VHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYY---------------------------------------------  547 (974)
T ss_pred             hhhhhhhhheeecCcceeeecccchhhhccccchh---------------------------------------------
Confidence            99999999999999999999999999765532211                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                      ..+...-...|||||.+....++.++|||.|||++||++. |..||.+
T Consensus       548 --------------------------------kaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqg  595 (974)
T KOG4257|consen  548 --------------------------------KASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQG  595 (974)
T ss_pred             --------------------------------hccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccc
Confidence                                            1111223557999999999999999999999999999885 9999999


Q ss_pred             CChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCC---hHHhh------------cCCC
Q 010140          400 ENNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG---SVEIK------------RHEF  463 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~---~~ell------------~hp~  463 (517)
                      -.+.+.+..+-++.. +.|+..         ++.+..|+.+||+++|.+||.+.+.   +.+++            +.-+
T Consensus       596 vkNsDVI~~iEnGeRlP~P~nC---------Pp~LYslmskcWayeP~kRPrftei~~~lsdv~qeek~~~~Eq~r~~R~  666 (974)
T KOG4257|consen  596 VKNSDVIGHIENGERLPCPPNC---------PPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQEEKINSSEQLRRQRK  666 (974)
T ss_pred             ccccceEEEecCCCCCCCCCCC---------ChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Confidence            988888777766543 333322         2248999999999999999998531   12222            2334


Q ss_pred             cCCCCcccccCCCCCCC
Q 010140          464 FKGINWALIRSIKPPEV  480 (517)
Q Consensus       464 f~~~~~~~~~~~~p~~~  480 (517)
                      -....|..-..+.+|..
T Consensus       667 ~a~~~~~~~~~~e~PPK  683 (974)
T KOG4257|consen  667 VASMIWQNSDDIEIPPK  683 (974)
T ss_pred             ccceeeccCCccCCCCC
Confidence            44556766555555543

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=3e-38  Score=307.37  Aligned_cols=252  Identities=26%  Similarity=0.372  Sum_probs=194.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH-------HHHHHHhHHHHHHHHHHh-cCCCCccceee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-------AIRKKLHRADMEKVILTM-LDHPFLPTLYA  156 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-------~~~~~~~~~~~E~~il~~-l~HpnIv~l~~  156 (517)
                      +|++.+.||+|+||.||+|.+...    .++.+|+|.+.....       .......++..|+.++.+ ++||||+++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~   76 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNN----GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYK   76 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCC----CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEe
Confidence            488899999999999999998752    457899998754321       112334556678887765 79999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++..++..|+||||++|++|.+++.............                          .+..++.|++.||.|||
T Consensus        77 ~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~--------------------------~~~~~~~~l~~~l~~lh  130 (269)
T cd08528          77 TFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEE--------------------------RIWNIFVQMVLALRYLH  130 (269)
T ss_pred             eEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHH--------------------------HHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998875432111111111                          22367899999999999


Q ss_pred             h-cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          237 M-MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       237 ~-~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      + .||+||||||+||+++.++.++|+|||++.......                                          
T Consensus       131 ~~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------------------------------------------  168 (269)
T cd08528         131 KEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES------------------------------------------  168 (269)
T ss_pred             cCCceeecCCCHHHEEECCCCcEEEecccceeeccccc------------------------------------------
Confidence            6 789999999999999999999999999984322100                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                           ......|+..|+|||.+.+..++.++|||||||++|+|++|.+
T Consensus       169 -------------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~  211 (269)
T cd08528         169 -------------------------------------KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQP  211 (269)
T ss_pred             -------------------------------------ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCC
Confidence                                                 1123458889999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||...........+......... ...      ....+.+||.+||+.||++||++.
T Consensus       212 p~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~l~~li~~cl~~~p~~Rp~~~  261 (269)
T cd08528         212 PFYSTNMLSLATKIVEAVYEPLP-EGM------YSEDVTDVITSCLTPDAEARPDII  261 (269)
T ss_pred             cccccCHHHHHHHHhhccCCcCC-ccc------CCHHHHHHHHHHCCCCCccCCCHH
Confidence            99887766666666554332111 111      123589999999999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.8e-38  Score=308.16  Aligned_cols=255  Identities=24%  Similarity=0.335  Sum_probs=191.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--C
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--S  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~  161 (517)
                      ++|++.+.||+|+||.||+|+...... .+++.||+|++......  .....+..|+.+++.++||||+++++++..  +
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~-~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~   80 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGD-NTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGG   80 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCC-CCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCC
Confidence            578899999999999999998764221 25688999999765432  345677789999999999999999999877  6


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||+++++|.+++..... .+...                            .+..++.||+.||+|||++||+
T Consensus        81 ~~~~lv~e~~~~~~l~~~l~~~~~-~~~~~----------------------------~~~~~~~~l~~aL~~lH~~~i~  131 (284)
T cd05038          81 RSLRLIMEYLPSGSLRDYLQRHRD-QINLK----------------------------RLLLFSSQICKGMDYLGSQRYI  131 (284)
T ss_pred             CceEEEEecCCCCCHHHHHHhCcc-ccCHH----------------------------HHHHHHHHHHHHHHHHHhCCee
Confidence            689999999999999999876431 12222                            1236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++.++|+|||++.........                                              
T Consensus       132 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~----------------------------------------------  165 (284)
T cd05038         132 HRDLAARNILVESEDLVKISDFGLAKVLPEDKDY----------------------------------------------  165 (284)
T ss_pred             cCCCCHHhEEEcCCCCEEEcccccccccccCCcc----------------------------------------------
Confidence            9999999999999999999999998543210000                                              


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ........++..|+|||.+.+..++.++|||||||++|||++|..||....
T Consensus       166 -----------------------------~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~  216 (284)
T cd05038         166 -----------------------------YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPP  216 (284)
T ss_pred             -----------------------------eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCccccc
Confidence                                         000011234567999999988889999999999999999999999987543


Q ss_pred             hH--------------HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NE--------------KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~--------------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..              ..+...+......+...       ....++.+|+.+||+.||++||++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~cl~~~p~~Rpt~~  274 (284)
T cd05038         217 AEFLRMIGIAQGQMIVTRLLELLKEGERLPRPP-------SCPDEVYDLMKLCWEAEPQDRPSFA  274 (284)
T ss_pred             chhccccccccccccHHHHHHHHHcCCcCCCCc-------cCCHHHHHHHHHHhccChhhCCCHH
Confidence            21              11222222222222111       1123589999999999999999997

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=4.5e-38  Score=333.80  Aligned_cols=291  Identities=19%  Similarity=0.191  Sum_probs=182.9

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|.+.+.||+|+||.||+|++..... ..+..||+|.+.......     ....|  .+....+.+++.++..
T Consensus       126 ~~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~-~~~~~vAvK~~~~~~~~e-----~~~~e--~l~~~~~~~~~~~~~~  197 (566)
T PLN03225        126 RPSFKKDDFVLGKKLGEGAFGVVYKASLVNKQS-KKEGKYVLKKATEYGAVE-----IWMNE--RVRRACPNSCADFVYG  197 (566)
T ss_pred             CCCCccCCeEEeEEEeeCCCeEEEEEEEcCCcc-ccCcEEEEEEecccchhH-----HHHHH--HHHhhchhhHHHHHHh
Confidence            455678999999999999999999999886211 127889999876432110     00001  1122223333333222


Q ss_pred             ------eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCcccc-ccchhhhhhhHHHHHHHH
Q 010140          158 ------FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVH-TDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       158 ------~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~qi~~  230 (517)
                            ...+...+|||||+.+++|.+++..... .......          ......... ........++.++.||+.
T Consensus       198 ~~~~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~-~~~v~~~----------l~~~~~~l~~~~~r~~~~i~~i~~qll~  266 (566)
T PLN03225        198 FLEPVSSKKEDEYWLVWRYEGESTLADLMQSKEF-PYNVEPY----------LLGKVQDLPKGLERENKIIQTIMRQILF  266 (566)
T ss_pred             hhcccccccCCceEEEEEecCCCcHHHHHHhcCC-chhHHHH----------hccchhhccccchhhHHHHHHHHHHHHH
Confidence                  2456679999999999999999875421 0000000          000000000 011112235678999999


Q ss_pred             HHHHHHhcCceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+.+...                                     
T Consensus       267 aL~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~-------------------------------------  309 (566)
T PLN03225        267 ALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVG-------------------------------------  309 (566)
T ss_pred             HHHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccc-------------------------------------
Confidence            999999999999999999999985 589999999998432210                                     


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----------------
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----------------  373 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----------------  373 (517)
                                                              .......++||+.|||||.+....                
T Consensus       310 ----------------------------------------~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp  349 (566)
T PLN03225        310 ----------------------------------------INYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSP  349 (566)
T ss_pred             ----------------------------------------cccCCcccccCCCccChHHhhccCCCCCCccccccccccc
Confidence                                                    001123457899999999764322                


Q ss_pred             ------CCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcC-CCCC-------CCCCCCC-chhHH----hhhhHH
Q 010140          374 ------HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK-PLTF-------PRIGVSS-SKEFE----EVVKLQ  434 (517)
Q Consensus       374 ------~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~-~~~~-------p~~~~~~-~~~~~----~~~~l~  434 (517)
                            ++.++|||||||+||||+++..++..  ....+..++.. ....       +...... ...++    ......
T Consensus       350 ~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  427 (566)
T PLN03225        350 VLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDS--NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGW  427 (566)
T ss_pred             hhccccCCCCcccHHHHHHHHHHHhCcCCCch--HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHH
Confidence                  34467999999999999997766542  22222222211 1000       0000000 00000    011356


Q ss_pred             HHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          435 DLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       435 dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +||.+||++||++|||+.    |+|+||||++.++.
T Consensus       428 dLi~~mL~~dP~kR~ta~----e~L~Hpff~~~~~~  459 (566)
T PLN03225        428 ELLKSMMRFKGRQRISAK----AALAHPYFDREGLL  459 (566)
T ss_pred             HHHHHHccCCcccCCCHH----HHhCCcCcCCCCcc
Confidence            899999999999999998    99999999998875

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=315.88  Aligned_cols=253  Identities=20%  Similarity=0.241  Sum_probs=204.1

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .|+....+..+..+||-|.||.||.|.++.     -...||||.++.+.    ..++.|..|..+|+.++|||+|+|+++
T Consensus       261 kWEmeRtdItMkhKLGGGQYGeVYeGvWKk-----yslTvAVKtLKEDt----MeveEFLkEAAvMKeikHpNLVqLLGV  331 (1157)
T KOG4278|consen  261 KWEMERTDITMKHKLGGGQYGEVYEGVWKK-----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV  331 (1157)
T ss_pred             hhhccchheeeeeccCCCcccceeeeeeec-----cceeeehhhhhhcc----hhHHHHHHHHHHHHhhcCccHHHHhhh
Confidence            344445667888999999999999999997     55679999998775    446778889999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |..+..+|||+|||..|+|.+||+.......+   +..                         +..++.||..|++||..
T Consensus       332 CT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~---avv-------------------------LlyMAtQIsSaMeYLEk  383 (1157)
T KOG4278|consen  332 CTHEPPFYIITEFMCYGNLLDYLRECNRSEVP---AVV-------------------------LLYMATQISSAMEYLEK  383 (1157)
T ss_pred             hccCCCeEEEEecccCccHHHHHHHhchhhcc---hhH-------------------------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886432211   111                         13789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +++|||||..+|+|+.++..||++|||+++.+.....                                           
T Consensus       384 knFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTY-------------------------------------------  420 (1157)
T KOG4278|consen  384 KNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTY-------------------------------------------  420 (1157)
T ss_pred             hhhhhhhhhhhhccccccceEEeeccchhhhhcCCce-------------------------------------------
Confidence            9999999999999999999999999999965431100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                        .-.....-...|.|||.+..+.++.++|||+|||+|||+.| |-.|
T Consensus       421 ----------------------------------TAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsP  466 (1157)
T KOG4278|consen  421 ----------------------------------TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSP  466 (1157)
T ss_pred             ----------------------------------ecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCC
Confidence                                              00011123457999999999999999999999999999996 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+.+...++..+-++-..-...++        ++.+.+||+.||+++|.+||+++
T Consensus       467 YPGidlSqVY~LLEkgyRM~~PeGC--------PpkVYeLMraCW~WsPsDRPsFa  514 (1157)
T KOG4278|consen  467 YPGIDLSQVYGLLEKGYRMDGPEGC--------PPKVYELMRACWNWSPSDRPSFA  514 (1157)
T ss_pred             CCCccHHHHHHHHhccccccCCCCC--------CHHHHHHHHHHhcCCcccCccHH
Confidence            9999887777665554322222222        23589999999999999999986

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-39  Score=324.62  Aligned_cols=256  Identities=23%  Similarity=0.296  Sum_probs=206.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++.++.++||+|.||.|++|.+.....  +.-.||||+++.+....  ....|.+|+.+|.+|+|||+|+|||+..+
T Consensus       107 Ipee~i~l~e~LG~GsFgvV~rg~Wt~psg--k~V~VAVKclr~d~l~~--~mddflrEas~M~~L~H~hliRLyGvVl~  182 (1039)
T KOG0199|consen  107 IPEEQIKLYELLGEGSFGVVKRGTWTQPSG--KHVNVAVKCLRDDSLNA--IMDDFLREASHMLKLQHPHLIRLYGVVLD  182 (1039)
T ss_pred             ccHHHHHHHHHhcCcceeeEeeccccCCCC--cEEeEEEEeccCCccch--hHHHHHHHHHHHHhccCcceeEEeeeecc
Confidence            344667788999999999999999987533  44679999998775542  56788899999999999999999999887


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       ..+.||||+++.|+|.+.|.+.....+                            +...+..|+.||+.|+.||.++++
T Consensus       183 -qp~mMV~ELaplGSLldrLrka~~~~l----------------------------lv~~Lcdya~QiA~aM~YLeskrl  233 (1039)
T KOG0199|consen  183 -QPAMMVFELAPLGSLLDRLRKAKKAIL----------------------------LVSRLCDYAMQIAKAMQYLESKRL  233 (1039)
T ss_pred             -chhhHHhhhcccchHHHHHhhccccce----------------------------eHHHHHHHHHHHHHHHHHHhhhhh
Confidence             788999999999999999877322222                            222335899999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||..+|+|+-....|||+||||.+.+.....+.                                            
T Consensus       234 vHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Y--------------------------------------------  269 (1039)
T KOG0199|consen  234 VHRDLAARNLLLASPRTVKICDFGLMRALGENEDMY--------------------------------------------  269 (1039)
T ss_pred             hhhhhhhhhheecccceeeeecccceeccCCCCcce--------------------------------------------
Confidence            999999999999999999999999997665433221                                            


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                     .......-...|.|||.+....++.++|||++||+||||++ |+.||.|
T Consensus       270 -------------------------------vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G  318 (1039)
T KOG0199|consen  270 -------------------------------VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVG  318 (1039)
T ss_pred             -------------------------------EecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCC
Confidence                                           00111123457999999999999999999999999999997 8999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .....++.+|-.+.. .+...       .++.++.+++..||..+|++|||+.
T Consensus       319 ~~g~qIL~~iD~~er-LpRPk-------~csedIY~imk~cWah~paDRptFs  363 (1039)
T KOG0199|consen  319 CRGIQILKNIDAGER-LPRPK-------YCSEDIYQIMKNCWAHNPADRPTFS  363 (1039)
T ss_pred             CCHHHHHHhcccccc-CCCCC-------CChHHHHHHHHHhccCCccccccHH
Confidence            999999888864332 22211       1223599999999999999999996

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=4e-39  Score=285.34  Aligned_cols=260  Identities=24%  Similarity=0.391  Sum_probs=198.9

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~  160 (517)
                      ..++|++.+++|+|.|++||.|....     ++..++||+++.-.      .+.+.+|+.||..|. ||||++|++...+
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~-----~~eK~ViKiLKPVk------kkKIkREikIL~nL~gg~NIi~L~DiV~D  104 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINIT-----NNEKCVIKILKPVK------KKKIKREIKILQNLRGGPNIIKLLDIVKD  104 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccC-----CCceEEEeeechHH------HHHHHHHHHHHHhccCCCCeeehhhhhcC
Confidence            45899999999999999999998776     66789999997532      234556999999996 9999999999976


Q ss_pred             C--ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 S--HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 ~--~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .  ....||+||+.+.|...+...                                 ++...+|.|+.||+.||.|+|++
T Consensus       105 p~SktpaLiFE~v~n~Dfk~ly~t---------------------------------l~d~dIryY~~elLkALdyCHS~  151 (338)
T KOG0668|consen  105 PESKTPSLIFEYVNNTDFKQLYPT---------------------------------LTDYDIRYYIYELLKALDYCHSM  151 (338)
T ss_pred             ccccCchhHhhhhccccHHHHhhh---------------------------------hchhhHHHHHHHHHHHHhHHHhc
Confidence            4  467899999998887654332                                 23456689999999999999999


Q ss_pred             CceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ||+|||+||.|++|+.. -.++|+|+|+|..+....                                            
T Consensus       152 GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~--------------------------------------------  187 (338)
T KOG0668|consen  152 GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK--------------------------------------------  187 (338)
T ss_pred             CcccccCCcceeeechhhceeeeeecchHhhcCCCc--------------------------------------------
Confidence            99999999999999954 479999999995433211                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         ..+-.+.+..|--||.+..-. |+...|+|||||++..|+..+-|
T Consensus       188 -----------------------------------eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkep  232 (338)
T KOG0668|consen  188 -----------------------------------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEP  232 (338)
T ss_pred             -----------------------------------eeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCc
Confidence                                               122336788899999997654 89999999999999999998877


Q ss_pred             C-CCCChHHHHHHHhcC-------------CCCCCCC-C----CCCchhH----------HhhhhHHHHHHHhccCCccc
Q 010140          397 F-KGENNEKTLINILKK-------------PLTFPRI-G----VSSSKEF----------EEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       397 f-~~~~~~~~~~~i~~~-------------~~~~p~~-~----~~~~~~~----------~~~~~l~dLi~~~L~~dP~~  447 (517)
                      | .|.++.+.+.+|.+-             ....++. .    .-....|          -..+++.|||.++|..|-.+
T Consensus       233 FFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqe  312 (338)
T KOG0668|consen  233 FFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQE  312 (338)
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhcccc
Confidence            5 566666666555320             0111000 0    0000001          11246899999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCCC
Q 010140          448 RIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |+|+.    |++.||||..+.
T Consensus       313 RlTak----Eam~HpyF~~~~  329 (338)
T KOG0668|consen  313 RLTAK----EAMAHPYFAPVR  329 (338)
T ss_pred             ccchH----HHhcCchHHHHH
Confidence            99998    999999998653

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-40  Score=297.33  Aligned_cols=265  Identities=22%  Similarity=0.317  Sum_probs=200.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHH-HhcCCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL-TMLDHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~  158 (517)
                      .+..++.+-+..||.|+||+|++..++.     +++..|||.++....  .....++..|.... +.-+.||||++||..
T Consensus        60 ~F~~~~Lqdlg~iG~G~fG~V~KM~hk~-----sg~~mAVKrIr~~n~--~keq~rll~e~d~~mks~~cp~IVkfyGa~  132 (361)
T KOG1006|consen   60 TFTSDNLQDLGEIGNGAFGTVNKMLHKP-----SGKLMAVKRIRSNNI--EKEQKRLLMEHDTVMKSSNCPNIVKFYGAL  132 (361)
T ss_pred             ccccchHHHHHHhcCCcchhhhhhhcCc-----cCcEEEEEEeeeccc--hHHHHHHHHHHHHHHhhcCCcHHHHHhhhh
Confidence            3555677778899999999999999887     789999999986654  34456677777654 445899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHh---CCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQR---QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      -.++..|+.||+| ..+|..+...   -....+++.                            .+-.|..-.+.||.||
T Consensus       133 F~EGdcWiCMELM-d~SlDklYk~vy~vq~~~ipE~----------------------------Ilg~ItvatV~AL~yL  183 (361)
T KOG1006|consen  133 FSEGDCWICMELM-DISLDKLYKRVYSVQKSRIPEN----------------------------ILGHITVATVDALDYL  183 (361)
T ss_pred             hcCCceeeeHHHH-hhhHHHHHHHHHHHHhccCcHh----------------------------hhhheeeeehhHHHHH
Confidence            9999999999999 6677554332   111222221                            1124556678999999


Q ss_pred             Hhc-CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          236 HMM-GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       236 H~~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      -.. +||||||||+|||++..|.+||||||++-.+-.                                           
T Consensus       184 K~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~-------------------------------------------  220 (361)
T KOG1006|consen  184 KEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVD-------------------------------------------  220 (361)
T ss_pred             HHHhhhhhccCChhheEEecCCCEeeecccchHhHHH-------------------------------------------
Confidence            865 899999999999999999999999999722110                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~ellt  392 (517)
                                                          ..-.+.-.|-..|||||.+...  +|+.++||||||++|||+.|
T Consensus       221 ------------------------------------SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAt  264 (361)
T KOG1006|consen  221 ------------------------------------SIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVAT  264 (361)
T ss_pred             ------------------------------------HHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeec
Confidence                                                0001223688899999999643  58999999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |..||.+-+. .+.+..++.+.++..   .......+....+..+|.-||.+|-.+||...    +|+++||++.
T Consensus       265 G~fPyr~w~svfeql~~Vv~gdpp~l---~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~----~Lk~~~fyr~  332 (361)
T KOG1006|consen  265 GNFPYRKWDSVFEQLCQVVIGDPPIL---LFDKECVHYSFSMVRFINTCLIKDRSDRPKYD----DLKKFPFYRM  332 (361)
T ss_pred             CCCCcchHHHHHHHHHHHHcCCCCee---cCcccccccCHHHHHHHHHHhhcccccCcchh----hhhcCchhhh
Confidence            9999987654 455666666544322   22222233445689999999999999999998    9999999974

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-39  Score=296.61  Aligned_cols=270  Identities=27%  Similarity=0.381  Sum_probs=207.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      .+|.-++.+|.|+- .|..+-+.-     .++.||+|.+... .......++..+|..++..++|+||++++.+|.... 
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v-----~~~~v~ikk~~~p-f~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~   89 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQV-----LGRPVAIKKLSRP-FQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKT   89 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhh-----ccCceehhhhcCc-cccCccchhhhhhhhhhhhhcccceeeeeeccCcccc
Confidence            57888999999998 666666543     6788999988766 333455677888999999999999999999996543 


Q ss_pred             -----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          163 -----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       163 -----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                           .+|+||||+ .++|.+.+.....                                -..++++..|++.|++|||+
T Consensus        90 l~~~~e~y~v~e~m-~~nl~~vi~~elD--------------------------------H~tis~i~yq~~~~ik~lhs  136 (369)
T KOG0665|consen   90 LEEFQEVYLVMELM-DANLCQVILMELD--------------------------------HETISYILYQMLCGIKHLHS  136 (369)
T ss_pred             HHHHHhHHHHHHhh-hhHHHHHHHHhcc--------------------------------hHHHHHHHHHHHHHHHHHHh
Confidence                 579999999 6799887653211                                11235778999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      .||+||||||+||++..++.+||.|||+|+.-+.                                              
T Consensus       137 ~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~----------------------------------------------  170 (369)
T KOG0665|consen  137 AGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDT----------------------------------------------  170 (369)
T ss_pred             cceeecccCcccceecchhheeeccchhhcccCc----------------------------------------------
Confidence            9999999999999999999999999999843211                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       ....+.++.|+.|.|||++.+..|...+||||+||++.||++|+..|
T Consensus       171 ---------------------------------~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf  217 (369)
T KOG0665|consen  171 ---------------------------------DFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLF  217 (369)
T ss_pred             ---------------------------------ccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEe
Confidence                                             12345678999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCC-------------------------------CCCCCCCCCCchhH--HhhhhHHHHHHHhccCC
Q 010140          398 KGENNEKTLINILKKP-------------------------------LTFPRIGVSSSKEF--EEVVKLQDLISKLLVKN  444 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~-------------------------------~~~p~~~~~~~~~~--~~~~~l~dLi~~~L~~d  444 (517)
                      .|.+..+.+.++....                               ..+|+.......+.  .....++||+.+||..|
T Consensus       218 ~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~  297 (369)
T KOG0665|consen  218 PGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVID  297 (369)
T ss_pred             cCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccC
Confidence            9877665555553210                               01222221111111  12235899999999999


Q ss_pred             cccccCCCCChHHhhcCCCcCCCCcccccCCCCC
Q 010140          445 PKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       445 P~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      |++|.++.    ++|+||||+  -|-.-..+..|
T Consensus       298 pe~Risv~----daL~HPY~~--vw~~~~ev~ap  325 (369)
T KOG0665|consen  298 PEKRISVD----DALRHPYIK--VWYDPDEVEAP  325 (369)
T ss_pred             hhhcccHH----HHhcCCeee--eecccccccCC
Confidence            99999998    999999999  56444444433

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=324.44  Aligned_cols=262  Identities=22%  Similarity=0.293  Sum_probs=214.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .++......|.++||.|.||+||+|+.+.+..  ....||||.++..-.  .++...|..|+.||-+++||||++|.|+.
T Consensus       624 kEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgk--re~~VAIKTLK~Gyt--ekqrrdFL~EAsIMGQFdHPNIIrLEGVV  699 (996)
T KOG0196|consen  624 KEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGK--REITVAIKTLKAGYT--EKQRRDFLSEASIMGQFDHPNIIRLEGVV  699 (996)
T ss_pred             hhcChhheEEEEEEecccccceecccccCCCC--cceeEEEeeeccCcc--HHHHhhhhhhhhhcccCCCCcEEEEEEEE
Confidence            45667788999999999999999999987543  457899999986533  35667888999999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .....+.||.|||++|+|..+|+.+.+. +..-+.                            -.+++.|+.|+.||-+.
T Consensus       700 Tks~PvMIiTEyMENGsLDsFLR~~DGq-ftviQL----------------------------VgMLrGIAsGMkYLsdm  750 (996)
T KOG0196|consen  700 TKSKPVMIITEYMENGSLDSFLRQNDGQ-FTVIQL----------------------------VGMLRGIASGMKYLSDM  750 (996)
T ss_pred             ecCceeEEEhhhhhCCcHHHHHhhcCCc-eEeehH----------------------------HHHHHHHHHHhHHHhhc
Confidence            9999999999999999999999887643 333222                            26779999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |+|||||..+|||++.+-.+|++|||+++.+.+.+.-                                           
T Consensus       751 ~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~-------------------------------------------  787 (996)
T KOG0196|consen  751 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-------------------------------------------  787 (996)
T ss_pred             CchhhhhhhhheeeccceEEEeccccceeecccCCCc-------------------------------------------
Confidence            9999999999999999999999999999755432210                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHh-hCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ell-tG~~Pf  397 (517)
                                                      ......-.-...|.|||.+....++.++||||+||+|||.+ .|+.||
T Consensus       788 --------------------------------~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPY  835 (996)
T KOG0196|consen  788 --------------------------------AYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY  835 (996)
T ss_pred             --------------------------------cccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcc
Confidence                                            00001111245899999999999999999999999999977 599999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ...++.+.+..|.++-.-.|+-.++        ..|..|+..||++|-..||.+.    ||..
T Consensus       836 WdmSNQdVIkaIe~gyRLPpPmDCP--------~aL~qLMldCWqkdR~~RP~F~----qiV~  886 (996)
T KOG0196|consen  836 WDMSNQDVIKAIEQGYRLPPPMDCP--------AALYQLMLDCWQKDRNRRPKFA----QIVS  886 (996)
T ss_pred             cccchHHHHHHHHhccCCCCCCCCc--------HHHHHHHHHHHHHHhhcCCCHH----HHHH
Confidence            9999999999887765444433333        3589999999999999999998    5554

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-39  Score=307.03  Aligned_cols=268  Identities=29%  Similarity=0.394  Sum_probs=207.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH----HHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA----LAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~----~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..++|-++.+||+|||+.||+|.+..     .++.||+|+-....    ....+..+..-+|.+|.+.|+||.||++|++
T Consensus       461 Ln~RYLlLhLLGrGGFSEVyKAFDl~-----EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDy  535 (775)
T KOG1151|consen  461 LNDRYLLLHLLGRGGFSEVYKAFDLT-----EQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDY  535 (775)
T ss_pred             hHHHHHHHHHhccccHHHHHHhcccc-----hhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeee
Confidence            34789999999999999999999886     68999999854221    1233456777889999999999999999999


Q ss_pred             ee-cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          158 FE-ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       158 ~~-~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      |. +.+.+|-|+|||+|.||.-|++.+  +.+.+.++                            |.|+-||+.||.||.
T Consensus       536 fslDtdsFCTVLEYceGNDLDFYLKQh--klmSEKEA----------------------------RSIiMQiVnAL~YLN  585 (775)
T KOG1151|consen  536 FSLDTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEA----------------------------RSIIMQIVNALKYLN  585 (775)
T ss_pred             eeeccccceeeeeecCCCchhHHHHhh--hhhhHHHH----------------------------HHHHHHHHHHHHHHh
Confidence            96 567899999999999999888775  33334433                            577889999999999


Q ss_pred             hc--CceeccCCCCceEEc---cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          237 MM--GIVYRDLKPENVLVR---EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       237 ~~--~iiHrDLKp~NILl~---~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      +.  .|||-||||.|||+-   ..|.+||+|||+++.++......                                   
T Consensus       586 EikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~-----------------------------------  630 (775)
T KOG1151|consen  586 EIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNS-----------------------------------  630 (775)
T ss_pred             ccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCc-----------------------------------
Confidence            87  499999999999994   45789999999997765322110                                   


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC----CCCccchHHHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ----GHGSAVDWWTLGVFL  387 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~----~~~~~~DiWSlGvil  387 (517)
                                                          ......+....||.+|++||.+.-.    ..+.++||||+|||+
T Consensus       631 ------------------------------------vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIF  674 (775)
T KOG1151|consen  631 ------------------------------------VDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIF  674 (775)
T ss_pred             ------------------------------------ccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhh
Confidence                                                0001223456899999999998533    368899999999999


Q ss_pred             HHHhhCCCCCCCCChH-HHHH--HHh-cCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          388 YEMLYGTTPFKGENNE-KTLI--NIL-KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~-~~~~--~i~-~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      |.++.|+.||...-.. +++.  -|+ .....||......+       ++++||++||++.-++|....    +|-.|||
T Consensus       675 yQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVss-------eAkaFIRRCLaYRKeDR~DV~----qLA~dpy  743 (775)
T KOG1151|consen  675 YQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSS-------EAKAFIRRCLAYRKEDRIDVQ----QLACDPY  743 (775)
T ss_pred             hhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCH-------HHHHHHHHHHHhhhhhhhhHH----HHccCcc
Confidence            9999999999765432 2221  122 23445655444433       489999999999999998876    9999999


Q ss_pred             cCC
Q 010140          464 FKG  466 (517)
Q Consensus       464 f~~  466 (517)
                      |..
T Consensus       744 llP  746 (775)
T KOG1151|consen  744 LLP  746 (775)
T ss_pred             ccc
Confidence            974

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.4e-36  Score=311.90  Aligned_cols=294  Identities=21%  Similarity=0.230  Sum_probs=190.1

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCC-----------CCCCCceeeeeecchHHHHHHH-----------HHhH
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPM-----------VGLPQCFYAMKVVDREALAIRK-----------KLHR  135 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~-----------~~~~~~~vAiK~i~~~~~~~~~-----------~~~~  135 (517)
                      ..++..++|++.++||+|+||+||+|......           ....++.||||.+.........           ..+.
T Consensus       139 ~~r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~  218 (507)
T PLN03224        139 NSRWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAET  218 (507)
T ss_pred             CCCccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccch
Confidence            34567889999999999999999999753211           1124567999998643221111           1223


Q ss_pred             HHHHHHHHHhcCCCCc-----cceeeeeec--------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhh
Q 010140          136 ADMEKVILTMLDHPFL-----PTLYAEFEA--------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF  202 (517)
Q Consensus       136 ~~~E~~il~~l~HpnI-----v~l~~~~~~--------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~  202 (517)
                      ...|+.++.+++|.++     ++++++|..        .+..||||||+++|+|.+++...... +.......+      
T Consensus       219 ~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~-~~~~L~e~l------  291 (507)
T PLN03224        219 GMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGP-FPGCLEEFM------  291 (507)
T ss_pred             hHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCC-CcchHHHHH------
Confidence            3457777888866554     677777643        35689999999999999998753211 110000000      


Q ss_pred             hhhcCC-ccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcch
Q 010140          203 FFYNNL-GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLS  281 (517)
Q Consensus       203 ~~~~~~-~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~  281 (517)
                      ...... ..+.........++.++.||+.||.|||+++|+||||||+|||++.++.+||+|||++.......        
T Consensus       292 ~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~--------  363 (507)
T PLN03224        292 MAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGI--------  363 (507)
T ss_pred             hcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCC--------
Confidence            000000 00111112233456789999999999999999999999999999999999999999984321100        


Q ss_pred             HHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCC
Q 010140          282 FEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTH  361 (517)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~  361 (517)
                                                                                           ........+|+
T Consensus       364 ---------------------------------------------------------------------~~~~~~g~~tp  374 (507)
T PLN03224        364 ---------------------------------------------------------------------NFNPLYGMLDP  374 (507)
T ss_pred             ---------------------------------------------------------------------ccCccccCCCc
Confidence                                                                                 00011123588


Q ss_pred             CcccchhhcCCC--------------------CC--ccchHHHHHHHHHHHhhCCC-CCCCCChHH-----------HHH
Q 010140          362 EYLAPEVISGQG--------------------HG--SAVDWWTLGVFLYEMLYGTT-PFKGENNEK-----------TLI  407 (517)
Q Consensus       362 ~y~APE~l~~~~--------------------~~--~~~DiWSlGvil~elltG~~-Pf~~~~~~~-----------~~~  407 (517)
                      .|+|||++....                    |+  .+.||||+||++|+|++|.. ||.+.....           ...
T Consensus       375 ~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r  454 (507)
T PLN03224        375 RYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWR  454 (507)
T ss_pred             ceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHH
Confidence            999999986432                    11  24799999999999999986 775432111           111


Q ss_pred             HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCc---ccccCCCCChHHhhcCCCcCC
Q 010140          408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP---KKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       408 ~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP---~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+......++....       .....+|||.+||..+|   .+|+|+.    |+|+||||..
T Consensus       455 ~~~~~~~~~~~~d~-------~s~~~~dLi~~LL~~~~~~~~~RlSa~----eaL~Hp~f~~  505 (507)
T PLN03224        455 MYKGQKYDFSLLDR-------NKEAGWDLACKLITKRDQANRGRLSVG----QALSHRFFLP  505 (507)
T ss_pred             hhcccCCCcccccc-------cChHHHHHHHHHhccCCCCcccCCCHH----HHhCCCCcCC
Confidence            11222223322111       22358999999999876   6899998    9999999953

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-37  Score=316.96  Aligned_cols=252  Identities=27%  Similarity=0.353  Sum_probs=195.4

Q ss_pred             ceEEeeeeccceeE-EEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCce
Q 010140           86 FRLLRRLGSGDIGN-VYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHY  163 (517)
Q Consensus        86 y~i~~~LG~G~fG~-Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~  163 (517)
                      |.-.+.+|.|+-|+ ||+|...+       +.||||.+..+.      .....+|+.+|+.- +|||||++|+.-.+..+
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~-------R~VAVKrll~e~------~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF  577 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEG-------REVAVKRLLEEF------FDFAQREIQLLQESDEHPNVIRYYCSEQDRQF  577 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCC-------ceehHHHHhhHh------HHHHHHHHHHHHhccCCCceEEEEeeccCCce
Confidence            44456789999885 89998864       789999986553      23455699999998 69999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .||.+|+| ..+|.++++.. .........                         ...+..+.|++.||++||+.+||||
T Consensus       578 ~YIalELC-~~sL~dlie~~-~~d~~~~~~-------------------------i~~~~~l~q~~~GlaHLHsl~iVHR  630 (903)
T KOG1027|consen  578 LYIALELC-ACSLQDLIESS-GLDVEMQSD-------------------------IDPISVLSQIASGLAHLHSLKIVHR  630 (903)
T ss_pred             EEEEehHh-hhhHHHHHhcc-ccchhhccc-------------------------ccHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999 67999999874 111111110                         1123567899999999999999999


Q ss_pred             cCCCCceEEcc---C--CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          244 DLKPENVLVRE---D--GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       244 DLKp~NILl~~---~--~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||.||||+.   +  .+++|+|||+++++...+.-                                           
T Consensus       631 DLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS-------------------------------------------  667 (903)
T KOG1027|consen  631 DLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSS-------------------------------------------  667 (903)
T ss_pred             cCCCceEEEEccCCCcceeEEecccccccccCCCcch-------------------------------------------
Confidence            99999999975   3  47899999999776532211                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~Pf  397 (517)
                                                      -.+..+..||-+|+|||++....-+.++|||||||++|+.++| ..||
T Consensus       668 --------------------------------~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpF  715 (903)
T KOG1027|consen  668 --------------------------------FSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPF  715 (903)
T ss_pred             --------------------------------hhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCC
Confidence                                            1124456799999999999998888899999999999999986 9999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ......  -.+|+.+.............      ++.|||.+||+++|..||++.    ++|.||||
T Consensus       716 Gd~~~R--~~NIl~~~~~L~~L~~~~d~------eA~dLI~~ml~~dP~~RPsa~----~VL~HPlF  770 (903)
T KOG1027|consen  716 GDSLER--QANILTGNYTLVHLEPLPDC------EAKDLISRMLNPDPQLRPSAT----DVLNHPLF  770 (903)
T ss_pred             CchHHh--hhhhhcCccceeeeccCchH------HHHHHHHHhcCCCcccCCCHH----HHhCCCcc
Confidence            765433  34566665443322222111      489999999999999999998    99999999

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=280.94  Aligned_cols=267  Identities=23%  Similarity=0.281  Sum_probs=199.8

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc--
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH--  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--  162 (517)
                      +.+--+.||.|+||.||.+.+.+     +++.||+|.+..-. ..-...+++.+|+.+|..++|.||+..++..+...  
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPR-----dgrrvalkK~pnvf-q~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~d  127 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPR-----SGKRVALKKMPNVF-QNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPS  127 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCC-----CccchhHhhcchHH-HHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCch
Confidence            45667889999999999999887     78899999886443 22344577888999999999999999998876543  


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                         .+|+|+|++ ..||.+++-..  ..+                            +...++.++.||++||.|||+.|
T Consensus       128 fFqEiYV~TELm-QSDLHKIIVSP--Q~L----------------------------s~DHvKVFlYQILRGLKYLHsA~  176 (449)
T KOG0664|consen  128 FFQELYVLTELM-QSDLHKIIVSP--QAL----------------------------TPDHVKVFVYQILRGLKYLHTAN  176 (449)
T ss_pred             HHHHHHHHHHHH-HhhhhheeccC--CCC----------------------------CcchhhhhHHHHHhhhHHHhhcc
Confidence               468889998 56887765432  222                            22334467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |.||||||.|+|++.+..+||||||+++.......                                             
T Consensus       177 ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~---------------------------------------------  211 (449)
T KOG0664|consen  177 ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDR---------------------------------------------  211 (449)
T ss_pred             hhhccCCCccEEeccCceEEecccccccccchhhh---------------------------------------------
Confidence            99999999999999999999999999965332111                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      ...+.-+-|.+|+|||++.|.. |+.++||||+|||+.||+..+..|.
T Consensus       212 --------------------------------~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQ  259 (449)
T KOG0664|consen  212 --------------------------------LNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQ  259 (449)
T ss_pred             --------------------------------hhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhh
Confidence                                            0112235688999999999976 8999999999999999999999999


Q ss_pred             CCChHHHHHHHhc-----------------------CCCCCCCCCCCC--chhHHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          399 GENNEKTLINILK-----------------------KPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       399 ~~~~~~~~~~i~~-----------------------~~~~~p~~~~~~--~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ..++.+.+..|..                       .....|......  ........+..+++..||..||.+|++.+ 
T Consensus       260 Aq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~-  338 (449)
T KOG0664|consen  260 AAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVE-  338 (449)
T ss_pred             ccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHh-
Confidence            8777665554432                       222222211100  00001112467899999999999999988 


Q ss_pred             ChHHhhcCCCcCCCCc
Q 010140          454 GSVEIKRHEFFKGINW  469 (517)
Q Consensus       454 ~~~ell~hp~f~~~~~  469 (517)
                         +++.|+|.....+
T Consensus       339 ---~A~~~~~~~e~R~  351 (449)
T KOG0664|consen  339 ---EALQHRYLEEGRL  351 (449)
T ss_pred             ---hhcccccccccce
Confidence               9999999876543

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=6.3e-35  Score=278.17  Aligned_cols=243  Identities=44%  Similarity=0.695  Sum_probs=191.9

Q ss_pred             ceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEecCCCc
Q 010140           96 DIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGD  175 (517)
Q Consensus        96 ~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~  175 (517)
                      +||.||+|....     +++.+|+|++........  ...+..|+.++++++|+||+++++.+......+++|||+++++
T Consensus         1 ~~g~v~~~~~~~-----~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   73 (244)
T smart00220        1 SFGKVYLARDKK-----TGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGD   73 (244)
T ss_pred             CceEEEEEEECC-----CCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCC
Confidence            589999999876     578899999976543221  4667779999999999999999999999999999999999999


Q ss_pred             hhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccC
Q 010140          176 LYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED  255 (517)
Q Consensus       176 L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~  255 (517)
                      |..++.....  +...                            .+..++.+++.+|.|||+.+|+|+||+|+||+++.+
T Consensus        74 L~~~~~~~~~--~~~~----------------------------~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~  123 (244)
T smart00220       74 LFDLLKKRGR--LSED----------------------------EARFYARQILSALEYLHSNGIIHRDLKPENILLDED  123 (244)
T ss_pred             HHHHHHhccC--CCHH----------------------------HHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCC
Confidence            9998866422  1111                            123678999999999999999999999999999999


Q ss_pred             CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCC
Q 010140          256 GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHH  335 (517)
Q Consensus       256 ~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (517)
                      +.++|+|||.+.......                                                              
T Consensus       124 ~~~~l~d~~~~~~~~~~~--------------------------------------------------------------  141 (244)
T smart00220      124 GHVKLADFGLARQLDPGG--------------------------------------------------------------  141 (244)
T ss_pred             CcEEEccccceeeecccc--------------------------------------------------------------
Confidence            999999999984322100                                                              


Q ss_pred             CccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHhcCCC
Q 010140          336 DQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG-ENNEKTLINILKKPL  414 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~-~~~~~~~~~i~~~~~  414 (517)
                                       ......|+..|++||.+.+..++.++||||||+++|+|++|..||.. .........+.....
T Consensus       142 -----------------~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~  204 (244)
T smart00220      142 -----------------LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKP  204 (244)
T ss_pred             -----------------ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCC
Confidence                             11233578899999999988889999999999999999999999988 444444444443333


Q ss_pred             CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       415 ~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      ........      ...++.+++.+||..||++||++.    ++++||||
T Consensus       205 ~~~~~~~~------~~~~~~~~i~~~l~~~p~~Rp~~~----~~~~~~~~  244 (244)
T smart00220      205 PFPPPEWK------ISPEAKDLIRKLLVKDPEKRLTAE----EALQHPFF  244 (244)
T ss_pred             CCcccccc------CCHHHHHHHHHHccCCchhccCHH----HHhhCCCC
Confidence            32221110      122589999999999999999998    99999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=303.80  Aligned_cols=262  Identities=28%  Similarity=0.441  Sum_probs=209.7

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|+++.++|.|+||.||+++++.     +++..|+|+++-+..   ....-++.|+-+++.++|||||.+++.+-..
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~-----s~elaavkvVkLep~---dd~~~iqqei~~~~dc~h~nivay~gsylr~   84 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKR-----SGELAAVKVVKLEPG---DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRR   84 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccc-----cCchhhheeeeccCC---ccccccccceeeeecCCCcChHHHHhhhhhh
Confidence            44799999999999999999999998     788999999976542   3344555699999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|++||||.||+|.+.-.-                              +..+...++.+.+++.+.||+|||++|=+
T Consensus        85 dklwicMEycgggslQdiy~~------------------------------TgplselqiayvcRetl~gl~ylhs~gk~  134 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYHV------------------------------TGPLSELQIAYVCRETLQGLKYLHSQGKI  134 (829)
T ss_pred             cCcEEEEEecCCCcccceeee------------------------------cccchhHHHHHHHhhhhccchhhhcCCcc
Confidence            999999999999999774322                              11222333447789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      |||||-.|||++..|.+|++|||.+..+..                                                  
T Consensus       135 hRdiKGanilltd~gDvklaDfgvsaqita--------------------------------------------------  164 (829)
T KOG0576|consen  135 HRDIKGANILLTDEGDVKLADFGVSAQITA--------------------------------------------------  164 (829)
T ss_pred             cccccccceeecccCceeecccCchhhhhh--------------------------------------------------
Confidence            999999999999999999999999733220                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                  .-.+..+++|||+|||||+-.   ...|...+|||++|+...|+.--++|..
T Consensus       165 ----------------------------ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf  216 (829)
T KOG0576|consen  165 ----------------------------TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF  216 (829)
T ss_pred             ----------------------------hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc
Confidence                                        012345679999999999863   4469999999999999999999999987


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ...+...+...-+..+..|.......  |  ...+-+|++.+|.++|++||+++    .+|.|||....
T Consensus       217 dlhpmr~l~LmTkS~~qpp~lkDk~k--w--s~~fh~fvK~altknpKkRptae----klL~h~fvs~~  277 (829)
T KOG0576|consen  217 DLHPMRALFLMTKSGFQPPTLKDKTK--W--SEFFHNFVKGALTKNPKKRPTAE----KLLQHPFVSQT  277 (829)
T ss_pred             ccchHHHHHHhhccCCCCCcccCCcc--c--hHHHHHHHHHHhcCCCccCCChh----hheeceeeccc
Confidence            77776666555555544443332211  1  12378999999999999999998    88899998753

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=259.19  Aligned_cols=222  Identities=24%  Similarity=0.318  Sum_probs=173.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  159 (517)
                      +..++..-+..||+|+||.|-+.++..     ++...|+|.+....-  .+..++..+|+.+..+. .+|.+|.+||.+.
T Consensus        43 V~ad~L~~i~elGrGayG~vekmrh~~-----sg~imAvKri~~tvn--~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~  115 (282)
T KOG0984|consen   43 VPADDLVGIEELGRGAYGVVEKMRHIQ-----SGTIMAVKRIRATVN--SQEQKRLLMDLDIIMRTVDCPFTVHFYGALF  115 (282)
T ss_pred             cchhhhhhhhhhcCCccchhhheeecc-----CCeEEEEeeehhhcC--hHHHHHHHHhhhhhccCCCCCeEEEeehhhh
Confidence            445667788899999999999999887     789999999875432  24456667788776554 7999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-  238 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-  238 (517)
                      ....+|+.||.| ..+|..+..+-......+++..                          +-+|+..++.||.|||++ 
T Consensus       116 regdvwIcME~M-~tSldkfy~~v~~~g~~ipE~v--------------------------lGkIa~Svv~al~~L~~kL  168 (282)
T KOG0984|consen  116 REGDVWICMELM-DTSLDKFYRKVLKKGGTIPEDV--------------------------LGKIAVSVVHALEFLHSKL  168 (282)
T ss_pred             ccccEEEeHHHh-hhhHHHHHHHHHhcCCcCchHH--------------------------hhHhHHHHHHHHHHHHHHh
Confidence            999999999999 6688776554322222232222                          237889999999999987 


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      .|||||+||+||||+.+|+||+||||.+-.+.+.-                                             
T Consensus       169 ~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSi---------------------------------------------  203 (282)
T KOG0984|consen  169 SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSI---------------------------------------------  203 (282)
T ss_pred             hhhhccCCcceEEEccCCcEEEcccccceeehhhh---------------------------------------------
Confidence            89999999999999999999999999983221100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC----CCCCccchHHHHHHHHHHHhhCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG----QGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~----~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                        -.+--.|-..|||||.+..    ..|+.++||||||+++.||.+++
T Consensus       204 ----------------------------------Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr  249 (282)
T KOG0984|consen  204 ----------------------------------AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILR  249 (282)
T ss_pred             ----------------------------------HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcc
Confidence                                              0011257889999999864    36899999999999999999999


Q ss_pred             CCCCC-CChHHHHHHHhcCCCC
Q 010140          395 TPFKG-ENNEKTLINILKKPLT  415 (517)
Q Consensus       395 ~Pf~~-~~~~~~~~~i~~~~~~  415 (517)
                      .||.. .++.+.+.++++.+.+
T Consensus       250 ~PY~~w~tpF~qLkqvVeep~P  271 (282)
T KOG0984|consen  250 FPYESWGTPFQQLKQVVEEPSP  271 (282)
T ss_pred             ccccccCCHHHHHHHHhcCCCC
Confidence            99985 4677888888876543

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4e-35  Score=284.93  Aligned_cols=247  Identities=24%  Similarity=0.357  Sum_probs=181.6

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh--cCCCCccceeeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM--LDHPFLPTLYAEFE  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~  159 (517)
                      .+....+...||+|.||.||+|+..+       +.||||++....      ...+..|..|.+.  ++|+||++++++-+
T Consensus       208 ~l~pl~l~eli~~Grfg~V~KaqL~~-------~~VAVKifp~~~------kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ek  274 (534)
T KOG3653|consen  208 ELDPLQLLELIGRGRFGCVWKAQLDN-------RLVAVKIFPEQE------KQSFQNEKNIYSLPGMKHENILQFIGAEK  274 (534)
T ss_pred             cCCchhhHHHhhcCccceeehhhccC-------ceeEEEecCHHH------HHHHHhHHHHHhccCccchhHHHhhchhc
Confidence            45678899999999999999998764       899999998653      2345557777666  48999999999876


Q ss_pred             cCc----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          160 ASH----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       160 ~~~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      ...    .++||+||.+.|+|.++|..+-                               .++...++++..|++||+||
T Consensus       275 r~t~~~~eywLVt~fh~kGsL~dyL~~nt-------------------------------isw~~~cria~SmarGLa~L  323 (534)
T KOG3653|consen  275 RGTADRMEYWLVTEFHPKGSLCDYLKANT-------------------------------ISWNSLCRIAESMARGLAHL  323 (534)
T ss_pred             cCCccccceeEEeeeccCCcHHHHHHhcc-------------------------------ccHHHHHHHHHHHHHHHHHh
Confidence            554    7899999999999999998741                               12234468899999999999


Q ss_pred             Hhc---------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccc
Q 010140          236 HMM---------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSC  306 (517)
Q Consensus       236 H~~---------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (517)
                      |+.         .|+|||||..||||..|++..|+|||+|.++.....                                
T Consensus       324 Hee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~--------------------------------  371 (534)
T KOG3653|consen  324 HEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKP--------------------------------  371 (534)
T ss_pred             cccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCC--------------------------------
Confidence            973         599999999999999999999999999965542110                                


Q ss_pred             ccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CC-----ccchH
Q 010140          307 FSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HG-----SAVDW  380 (517)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~-----~~~Di  380 (517)
                                                                  ......-+||.+|||||++.|.. +.     .+.||
T Consensus       372 --------------------------------------------~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~Dv  407 (534)
T KOG3653|consen  372 --------------------------------------------QGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDV  407 (534)
T ss_pred             --------------------------------------------CcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHH
Confidence                                                        01112348999999999998753 22     36899


Q ss_pred             HHHHHHHHHHhhCCC------------CCCC---C-ChHHHHHHHh-c--CCCCCCCCCCCCchhHHhhhhHHHHHHHhc
Q 010140          381 WTLGVFLYEMLYGTT------------PFKG---E-NNEKTLINIL-K--KPLTFPRIGVSSSKEFEEVVKLQDLISKLL  441 (517)
Q Consensus       381 WSlGvil~elltG~~------------Pf~~---~-~~~~~~~~i~-~--~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L  441 (517)
                      ||+|.+||||++...            ||..   . ...+.++..+ .  ..+.+|......    .....+++.|..||
T Consensus       408 YamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h----~~~~~l~et~EeCW  483 (534)
T KOG3653|consen  408 YAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKH----AGMAVLCETIEECW  483 (534)
T ss_pred             HHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcC----ccHHHHHHHHHHHc
Confidence            999999999997422            2321   1 1122333332 2  223333222111    22335899999999


Q ss_pred             cCCcccccCCC
Q 010140          442 VKNPKKRIGSL  452 (517)
Q Consensus       442 ~~dP~~R~t~~  452 (517)
                      +.||+.|+|+.
T Consensus       484 DhDaeARLTA~  494 (534)
T KOG3653|consen  484 DHDAEARLTAG  494 (534)
T ss_pred             CCchhhhhhhH
Confidence            99999999993

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=7e-36  Score=295.58  Aligned_cols=203  Identities=31%  Similarity=0.504  Sum_probs=173.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-----HHHHhHHHHHHHHHHhcC---CCCccc
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-----RKKLHRADMEKVILTMLD---HPFLPT  153 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-----~~~~~~~~~E~~il~~l~---HpnIv~  153 (517)
                      ...+|..++.||+|+||.|++|.++.     ....|+||.+.++..-.     ..++..+-.|+.||..|+   |+||++
T Consensus       559 k~s~yttlq~lG~GAyGkV~lai~K~-----n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlK  633 (772)
T KOG1152|consen  559 KFSDYTTLQPLGEGAYGKVNLAIHKE-----NNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILK  633 (772)
T ss_pred             ccccceeeeeccccccceEEEeeecc-----cceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhh
Confidence            34679999999999999999999997     57889999998876533     234455667999999997   999999


Q ss_pred             eeeeeecCceeEEEEEec-CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          154 LYAEFEASHYSCLVMEYC-PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       154 l~~~~~~~~~~~lV~E~~-~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ++++|++++++||+||-- +|.||++++..+  .++.+.+++                            .|.+|++.|+
T Consensus       634 lLdfFEddd~yyl~te~hg~gIDLFd~IE~k--p~m~E~eAk----------------------------~IFkQV~agi  683 (772)
T KOG1152|consen  634 LLDFFEDDDYYYLETEVHGEGIDLFDFIEFK--PRMDEPEAK----------------------------LIFKQVVAGI  683 (772)
T ss_pred             hhheeecCCeeEEEecCCCCCcchhhhhhcc--CccchHHHH----------------------------HHHHHHHhcc
Confidence            999999999999999984 567999999887  456666666                            4458999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      ++||++||||||||-||++++.+|.+||+|||.|....                                          
T Consensus       684 ~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~k------------------------------------------  721 (772)
T KOG1152|consen  684 KHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTK------------------------------------------  721 (772)
T ss_pred             ccccccCceecccccccEEEecCCeEEEeeccchhhhc------------------------------------------
Confidence            99999999999999999999999999999999872211                                          


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEML  391 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~ell  391 (517)
                                                            +.....++||..|.|||++.|..| +..-|||+||++||.++
T Consensus       722 --------------------------------------sgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytiv  763 (772)
T KOG1152|consen  722 --------------------------------------SGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIV  763 (772)
T ss_pred             --------------------------------------CCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEE
Confidence                                                  112346789999999999999987 88999999999999999


Q ss_pred             hCCCCCCC
Q 010140          392 YGTTPFKG  399 (517)
Q Consensus       392 tG~~Pf~~  399 (517)
                      ..+.||..
T Consensus       764 ykenpyyn  771 (772)
T KOG1152|consen  764 YKENPYYN  771 (772)
T ss_pred             eccCCCcC
Confidence            99999864

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=279.35  Aligned_cols=250  Identities=24%  Similarity=0.317  Sum_probs=184.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHH--HhcCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL--TMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il--~~l~HpnIv~l~~~~~~~  161 (517)
                      .+..+++.||+|.||+||+|++++       ..||||++......      ...+|.+|.  ..|+|+||+.+++.-..+
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrG-------e~VAVKiF~srdE~------SWfrEtEIYqTvmLRHENILgFIaaD~~~  277 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRG-------EDVAVKIFSSRDER------SWFRETEIYQTVMLRHENILGFIAADNKD  277 (513)
T ss_pred             heeEEEEEecCccccceeeccccC-------CceEEEEecccchh------hhhhHHHHHHHHHhccchhhhhhhccccC
Confidence            568899999999999999999986       67999999754321      222355554  457999999999876433


Q ss_pred             c----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 H----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +    .+|||.+|.+.|+|+++|.+.   .+.....                            .+++..++.||++||.
T Consensus       278 ~gs~TQLwLvTdYHe~GSL~DyL~r~---tv~~~~m----------------------------l~LalS~AsGLaHLH~  326 (513)
T KOG2052|consen  278 NGSWTQLWLVTDYHEHGSLYDYLNRN---TVTTEGM----------------------------LKLALSIASGLAHLHM  326 (513)
T ss_pred             CCceEEEEEeeecccCCcHHHHHhhc---cCCHHHH----------------------------HHHHHHHhhhHHHHHH
Confidence            2    589999999999999999874   2222222                            2678899999999996


Q ss_pred             c--------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          238 M--------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       238 ~--------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      .        .|.|||||..|||+..+|.+-|+|+|||-..+....                                   
T Consensus       327 eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~-----------------------------------  371 (513)
T KOG2052|consen  327 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTD-----------------------------------  371 (513)
T ss_pred             HHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCC-----------------------------------
Confidence            4        499999999999999999999999999944332111                                   


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----C--CccchHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----H--GSAVDWWTL  383 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----~--~~~~DiWSl  383 (517)
                                                             ......+..+||.+|||||++...-    +  -..+|||||
T Consensus       372 ---------------------------------------~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYaf  412 (513)
T KOG2052|consen  372 ---------------------------------------TIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAF  412 (513)
T ss_pred             ---------------------------------------cccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHH
Confidence                                                   1112234558999999999997542    1  236899999


Q ss_pred             HHHHHHHhh----C------CCCCCCC----ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCccccc
Q 010140          384 GVFLYEMLY----G------TTPFKGE----NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI  449 (517)
Q Consensus       384 Gvil~ellt----G------~~Pf~~~----~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~  449 (517)
                      |.++||++.    |      .+||.+.    ...+.+.+++......|.....+.. .+....+..||+.||..||..|.
T Consensus       413 gLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s-~~~l~~m~klMkeCW~~Np~aRl  491 (513)
T KOG2052|consen  413 GLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKS-DPALRVMAKLMKECWYANPAARL  491 (513)
T ss_pred             HHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCccccc-CHHHHHHHHHHHHhhcCCchhhh
Confidence            999999984    2      6788753    3456666666544444444333322 13445678999999999999999


Q ss_pred             CCC
Q 010140          450 GSL  452 (517)
Q Consensus       450 t~~  452 (517)
                      |+-
T Consensus       492 tAL  494 (513)
T KOG2052|consen  492 TAL  494 (513)
T ss_pred             HHH
Confidence            985

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=307.21  Aligned_cols=278  Identities=22%  Similarity=0.278  Sum_probs=210.8

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCC--CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccce
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVG--LPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTL  154 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l  154 (517)
                      .+++..++..+.+.||+|+||.|++|........  .....||||.++.....  .....+..|+.+|+.+ +||||+.+
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~--~~~~~~~~El~~m~~~g~H~niv~l  367 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS--SEKKDLMSELNVLKELGKHPNIVNL  367 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc--HHHHHHHHHHHHHHHhcCCcchhhh
Confidence            3455566677888999999999999987753332  13578999999866443  4566778899999998 69999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCC-CCccCccchhhhhhhhhhhhhcCCccccc--cchhhhhhhHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQP-GKRFGISSAKFVFFLLFFFFYNNLGFVHT--DVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~qi~~a  231 (517)
                      ++++...+.+++|+|||..|+|..+++... ...+..                 .|....  +.++..++..++.||+.|
T Consensus       368 lG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~-----------------~~~~~~~~~~L~~~dLlsfa~QIa~G  430 (609)
T KOG0200|consen  368 LGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDG-----------------SGVFPNERDALTTKDLLSFAYQIANG  430 (609)
T ss_pred             eeeeccCCceEEEEEeccCCcHHHHHHhccccccccc-----------------cCCCccccCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998865 111110                 011111  235566777899999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      ++||++.++|||||..+|||+..+..+||+|||+|+.........                                   
T Consensus       431 Me~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~-----------------------------------  475 (609)
T KOG0200|consen  431 MEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYR-----------------------------------  475 (609)
T ss_pred             HHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceE-----------------------------------
Confidence            999999999999999999999999999999999996433211110                                   


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCC--CCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVG--THEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--t~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                                                                ...-.|  ...|||||.+....|+.++||||+||+|||
T Consensus       476 ------------------------------------------~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~E  513 (609)
T KOG0200|consen  476 ------------------------------------------TKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWE  513 (609)
T ss_pred             ------------------------------------------ecCCCCccceeecCHHHhccCcccccchhhHHHHHHHH
Confidence                                                      000112  235999999999889999999999999999


Q ss_pred             Hhh-CCCCCCCCC-hHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          390 MLY-GTTPFKGEN-NEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       390 llt-G~~Pf~~~~-~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +++ |..||.+.. ..+.+..+..+.. ..|...         ..++.++++.||+.+|++||++.+..+.+-.
T Consensus       514 ifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c---------~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  514 IFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHC---------SDEIYDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             HhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCC---------CHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence            997 999999866 5566555555443 222221         2258999999999999999999854444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.8e-35  Score=331.85  Aligned_cols=240  Identities=19%  Similarity=0.224  Sum_probs=177.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|...+.||+|+||.||+|+.+.     .+..||||.+.....       ....|+.++++++|||||++++++.+.+..
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~  758 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSIK-----NGMQFVVKEINDVNS-------IPSSEIADMGKLQHPNIVKLIGLCRSEKGA  758 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEECC-----CCcEEEEEEccCCcc-------ccHHHHHHHhhCCCCCcceEEEEEEcCCCC
Confidence            45667889999999999999876     578899999864321       112368889999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH---hcCce
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH---MMGIV  241 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ii  241 (517)
                      |+||||+++|+|.+++..     +.+..                            ...++.||+.||+|||   +.+|+
T Consensus       759 ~lv~Ey~~~g~L~~~l~~-----l~~~~----------------------------~~~i~~~ia~~L~yLH~~~~~~ii  805 (968)
T PLN00113        759 YLIHEYIEGKNLSEVLRN-----LSWER----------------------------RRKIAIGIAKALRFLHCRCSPAVV  805 (968)
T ss_pred             EEEEeCCCCCcHHHHHhc-----CCHHH----------------------------HHHHHHHHHHHHHHhccCCCCCee
Confidence            999999999999998853     22211                            2368899999999999   66999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||+++.++..++. ||......                                                   
T Consensus       806 H~dlkp~Nil~~~~~~~~~~-~~~~~~~~---------------------------------------------------  833 (968)
T PLN00113        806 VGNLSPEKIIIDGKDEPHLR-LSLPGLLC---------------------------------------------------  833 (968)
T ss_pred             cCCCCHHhEEECCCCceEEE-eccccccc---------------------------------------------------
Confidence            99999999999988887775 55431100                                                   


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                     ......||+.|||||++.+..++.++|||||||++|||++|+.||....
T Consensus       834 -------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~  882 (968)
T PLN00113        834 -------------------------------TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEF  882 (968)
T ss_pred             -------------------------------cCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCccc
Confidence                                           0012258899999999999889999999999999999999999986432


Q ss_pred             h-----HHHHHHHhcCC----CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 N-----EKTLINILKKP----LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~-----~~~~~~i~~~~----~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .     .+.........    ...|..........++..++.+++.+||+.||++||++.
T Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~  942 (968)
T PLN00113        883 GVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCAN  942 (968)
T ss_pred             CCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHH
Confidence            1     11111111000    000111111111223445688999999999999999998

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=2.2e-35  Score=283.86  Aligned_cols=302  Identities=25%  Similarity=0.350  Sum_probs=203.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      .+.|.++.+||+|.|++||++.+...  ....+.||+|.+...     ....++..|+++|..+ .+.||+++.+++..+
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~--~~~~~~valk~i~~t-----s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnn  107 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQ--DTKRRYVALKAIYRT-----SSPSRILNELEMLYRLGGSDNIIKLNGCFRNN  107 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhh--ccccceEeeeecccc-----cCchHHHHHHHHHHHhccchhhhcchhhhccC
Confidence            46799999999999999999988763  225688999998654     3345577799999999 699999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+++||||++..+..++.....                                 ...++.|++.++.||.++|.+|||
T Consensus       108 d~v~ivlp~~~H~~f~~l~~~l~---------------------------------~~~i~~Yl~~ll~Al~~~h~~GIv  154 (418)
T KOG1167|consen  108 DQVAIVLPYFEHDRFRDLYRSLS---------------------------------LAEIRWYLRNLLKALAHLHKNGIV  154 (418)
T ss_pred             CeeEEEecccCccCHHHHHhcCC---------------------------------HHHHHHHHHHHHHHhhhhhccCcc
Confidence            99999999999988887765431                                 223468899999999999999999


Q ss_pred             eccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCC-----CCC-CCCcccccccccccc
Q 010140          242 YRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSC-----ATP-MQPVLSCFSSVSHGK  314 (517)
Q Consensus       242 HrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~  314 (517)
                      ||||||.|+|.+. .++-.|+|||+|...+.                +.......+     ..+ ++....+.+-.+...
T Consensus       155 HRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~----------------~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~  218 (418)
T KOG1167|consen  155 HRDIKPSNFLYNRRTQRGVLVDFGLAQRYDG----------------YQQTEHSRSYSGRHATPAMGKDVHCQSVATASK  218 (418)
T ss_pred             ccCCCccccccccccCCceEEechhHHHHHh----------------hhhhhhhhhhhcccCCccccCcccccccccccC
Confidence            9999999999984 56789999999943111                000000000     000 111111110000000


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG  393 (517)
                      ......                        ..............||++|+|||++...+ .++++||||.|||+.-++++
T Consensus       219 p~g~~~------------------------~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~  274 (418)
T KOG1167|consen  219 PAGYYR------------------------RCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSR  274 (418)
T ss_pred             CCCcee------------------------ccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhcc
Confidence            000000                        00111122344568999999999998765 68999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHh--------------cCC------CCCC----------CC----CCC------CchhH-Hh-h
Q 010140          394 TTPFKGENN-EKTLINIL--------------KKP------LTFP----------RI----GVS------SSKEF-EE-V  430 (517)
Q Consensus       394 ~~Pf~~~~~-~~~~~~i~--------------~~~------~~~p----------~~----~~~------~~~~~-~~-~  430 (517)
                      ..||....+ ...+..|.              .+.      ..++          ..    ...      ....+ +. +
T Consensus       275 ~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~  354 (418)
T KOG1167|consen  275 RYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFP  354 (418)
T ss_pred             ccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeecccccccc
Confidence            999875322 22222111              011      0000          00    000      00011 11 1


Q ss_pred             hhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          431 VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       431 ~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ..+.||+.+||+.||.+|+|++    ++|+||||...+
T Consensus       355 ~~~~dlLdk~le~np~kRitAE----eALkHpFF~~~~  388 (418)
T KOG1167|consen  355 ALLLDLLDKCLELNPQKRITAE----DALKHPFFDEAD  388 (418)
T ss_pred             HHHHHHHHHHccCChhhcccHH----HHhcCcCCcchh
Confidence            2578999999999999999998    999999999544

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=293.63  Aligned_cols=253  Identities=22%  Similarity=0.223  Sum_probs=197.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      ..+..++||+|+||+||+|.+.-. .+.-+.+||||++.....  .+....+..|+.+|..++|||+++|++++.... +
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pe-ge~vKipVaiKvl~~~t~--~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~  772 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPE-GENVKIPVAIKVLIEFTS--PKASIELLDEALRMASLDHPNLLRLLGVCMLST-L  772 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecC-CceecceeEEEEeeccCC--chhhHHHHHHHHHHhcCCCchHHHHhhhcccch-H
Confidence            345678999999999999998754 233567899999875532  244556777999999999999999999998766 8


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      .||++|+++|.|.++++.++. .+....                            +..|..||++|+.|||+++++|||
T Consensus       773 qlvtq~mP~G~LlDyvr~hr~-~igsq~----------------------------lLnw~~QIAkgM~YLe~qrlVHrd  823 (1177)
T KOG1025|consen  773 QLVTQLMPLGCLLDYVREHRD-NIGSQD----------------------------LLNWCYQIAKGMKYLEEQRLVHRD  823 (1177)
T ss_pred             HHHHHhcccchHHHHHHHhhc-cccHHH----------------------------HHHHHHHHHHHHHHHHhcchhhhh
Confidence            899999999999999987532 222211                            236889999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |..+|||+....++||.|||+++.........                                                
T Consensus       824 LaaRNVLVksP~hvkitdfgla~ll~~d~~ey------------------------------------------------  855 (1177)
T KOG1025|consen  824 LAARNVLVKSPNHVKITDFGLAKLLAPDEKEY------------------------------------------------  855 (1177)
T ss_pred             hhhhheeecCCCeEEEEecchhhccCcccccc------------------------------------------------
Confidence            99999999999999999999996544322111                                                


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNE  403 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~  403 (517)
                                                  ......-.+.|||-|.+....|+.++||||+||++||++| |..||.+....
T Consensus       856 ----------------------------~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~  907 (1177)
T KOG1025|consen  856 ----------------------------SAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAE  907 (1177)
T ss_pred             ----------------------------cccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHH
Confidence                                        0111123567999999999999999999999999999997 99999998877


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      ++-..+..+.. .+....-       ..++.-++.+||..|+..||++.+.
T Consensus       908 eI~dlle~geR-LsqPpiC-------tiDVy~~mvkCwmid~~~rp~fkel  950 (1177)
T KOG1025|consen  908 EIPDLLEKGER-LSQPPIC-------TIDVYMVMVKCWMIDADSRPTFKEL  950 (1177)
T ss_pred             HhhHHHhcccc-CCCCCCc-------cHHHHHHHHHHhccCcccCccHHHH
Confidence            76554444332 3222221       2258899999999999999999633

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-32  Score=258.98  Aligned_cols=266  Identities=19%  Similarity=0.168  Sum_probs=204.5

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+...++++...+-+|.||.||.|.++....-...+.|-+|.++....  ..++..+..|.-++..+.|||+..+.++.
T Consensus       279 l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS--~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  279 LTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS--QIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             hhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc--HHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            3444567889999999999999999888655444556677888866543  35567778888889999999999999977


Q ss_pred             e-cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          159 E-ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       159 ~-~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      . +....+.++.+..-|+|..++...++....-.+..                      .-.++-.++.|++.|++|||+
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtv----------------------tt~qlV~masQla~am~hlh~  414 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTV----------------------TTIQLVLMASQLAMAMEHLHN  414 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccch----------------------hHHHHHHHHHHHHHHHHHHHh
Confidence            4 55677889999988999999985433222221111                      112234689999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||||.||..+|++|++.-+|||+|=.+++.+-.                                              
T Consensus       415 ~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP----------------------------------------------  448 (563)
T KOG1024|consen  415 HGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFP----------------------------------------------  448 (563)
T ss_pred             cCcccchhhhhcceehhheeEEeccchhccccCc----------------------------------------------
Confidence            9999999999999999999999999998854321                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                       .|..++.+.+             -....||+||.+....|+.++|+|||||+||||+| |+.|
T Consensus       449 -----------------~DYhcLGDnE-------------nRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~P  498 (563)
T KOG1024|consen  449 -----------------GDYHCLGDNE-------------NRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLP  498 (563)
T ss_pred             -----------------ccccccCCCC-------------CCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCC
Confidence                             1111222111             13457999999999999999999999999999997 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |...++.++...+.++...-.+..        ++.++..++..||..+|++||+.+
T Consensus       499 yaeIDPfEm~~ylkdGyRlaQP~N--------CPDeLf~vMacCWallpeeRPsf~  546 (563)
T KOG1024|consen  499 YAEIDPFEMEHYLKDGYRLAQPFN--------CPDELFTVMACCWALLPEERPSFS  546 (563)
T ss_pred             ccccCHHHHHHHHhccceecCCCC--------CcHHHHHHHHHHHhcCcccCCCHH
Confidence            999999998887776643322222        223699999999999999999996

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-32  Score=245.36  Aligned_cols=240  Identities=26%  Similarity=0.355  Sum_probs=178.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceee-eeec
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYA-EFEA  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~-~~~~  160 (517)
                      .+.|.|.+.||+|.||.+.+|++++     ++..+++|.+.+...    ....|.+|...--.| .|.||+.-|+ .|+.
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~-----s~t~ivlKavp~p~t----t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt   93 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQ-----SKTRIVLKAVPRPQT----TQADFVREFHYSFFLSPHQHIIDTYEVAFQT   93 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccC-----CceEEEeeccCcchh----hHHHHHHHhccceeeccchhhhHHHHHHhhc
Confidence            3689999999999999999999998     778899999987753    345666677655555 5999998887 6788


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+.++++||||+.|||..-+..   .++++...                            +.++.|+++||.|||++++
T Consensus        94 ~d~YvF~qE~aP~gdL~snv~~---~GigE~~~----------------------------K~v~~ql~SAi~fMHsknl  142 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNVEA---AGIGEANT----------------------------KKVFAQLLSAIEFMHSKNL  142 (378)
T ss_pred             CceEEEeeccCccchhhhhcCc---ccccHHHH----------------------------HHHHHHHHHHHHHhhccch
Confidence            8899999999999999875544   23333333                            4678999999999999999


Q ss_pred             eeccCCCCceEEc--cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          241 VYRDLKPENVLVR--EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       241 iHrDLKp~NILl~--~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||.+||||-  +..+|||||||+.++.+..-                                             
T Consensus       143 VHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV---------------------------------------------  177 (378)
T KOG1345|consen  143 VHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTV---------------------------------------------  177 (378)
T ss_pred             hhcccccceEEEecCCccEEEeeecccccccCcee---------------------------------------------
Confidence            9999999999994  33489999999975432110                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-----CCccchHHHHHHHHHHHhhC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-----HGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-----~~~~~DiWSlGvil~elltG  393 (517)
                                                          ...--+..|.+||.+....     ..+.+|||.||+++|.+++|
T Consensus       178 ------------------------------------~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG  221 (378)
T KOG1345|consen  178 ------------------------------------KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTG  221 (378)
T ss_pred             ------------------------------------hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecC
Confidence                                                0112355689999875432     37789999999999999999


Q ss_pred             CCCCCCCCh----HHHHHHHhcC-CCCCCCCCCCCchhHHhhhhHHHHHHHhccCCccccc
Q 010140          394 TTPFKGENN----EKTLINILKK-PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI  449 (517)
Q Consensus       394 ~~Pf~~~~~----~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~  449 (517)
                      .+||.....    .-.+.+..++ ....|..-.+..+      .+..+.++-|..++++|-
T Consensus       222 ~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~------~a~r~Fkk~lt~~~~drc  276 (378)
T KOG1345|consen  222 KFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSE------KALRLFKKSLTPRFKDRC  276 (378)
T ss_pred             CCcchhhhccCchHHHHHHHhcccCccCchhhcccCH------HHHHHHHHhcCCcccccc
Confidence            999984322    2223333332 2334443333333      478999999999999993

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.8e-33  Score=278.52  Aligned_cols=263  Identities=40%  Similarity=0.696  Sum_probs=214.5

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCceeEEEEE
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      .+|+|+||.|++++.....  ..+..||+|+.++.....+... +...|..++...+ ||.+|++...|+.+..++++++
T Consensus         1 vlg~g~~gkvfLvrk~~g~--da~~~yamkvl~k~t~~~~~~~-~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld   77 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGA--DAGHLYAMKVLKKATLKVRDRT-HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILD   77 (612)
T ss_pred             CCCcCCCcchHHHHHhccc--cccchhhhhccccccccccccc-ccccHHHHHhhccCCCceeeeeeeeccccchhHhhh
Confidence            3799999999998755432  2678899999987765544433 5556888898886 9999999999999999999999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      +..||+|...+....                              ...+...+.+...++.|++++|+.+|+|||+|++|
T Consensus        78 ~~rgg~lft~l~~~~------------------------------~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~en  127 (612)
T KOG0603|consen   78 FLRGGDLFTRLSKEV------------------------------MFDELDVAFYLAELALALDHLHKLGIAYRDYKLEN  127 (612)
T ss_pred             hcccchhhhccccCC------------------------------chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccc
Confidence            999999987654421                              11222335778899999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      |+++.+|++++.|||+++..-.                                                          
T Consensus       128 illd~~Ghi~~tdfglske~v~----------------------------------------------------------  149 (612)
T KOG0603|consen  128 VLLLLEGHIKLTDFGLSKEAVK----------------------------------------------------------  149 (612)
T ss_pred             eeecccCccccCCchhhhHhHh----------------------------------------------------------
Confidence            9999999999999999843210                                                          


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                            .  ...|||..|||||++.  ++..++|+||+|+++|||++|..||.+    +.+..|
T Consensus       150 ----------------------~--~~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~I  199 (612)
T KOG0603|consen  150 ----------------------E--KIACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRI  199 (612)
T ss_pred             ----------------------h--hhcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHH
Confidence                                  0  0117999999999998  578899999999999999999999988    778888


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCCCCCCCCCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSIKPPEVPNN  483 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~~p~~~~~~  483 (517)
                      .+....+|.....         .+++++..|+..+|.+|.... ..+.|+++|+||..++|+.+  +...||+.|..
T Consensus       200 l~~~~~~p~~l~~---------~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~~l~~r~~~~~fkp~~  267 (612)
T KOG0603|consen  200 LKAELEMPRELSA---------EARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWNELEARSRPPPFKPGS  267 (612)
T ss_pred             hhhccCCchhhhH---------HHHHHHHHHHhhCHHHHhccCcchhHHHhccchheeeeHhhHhhcCCCCCCCCcc
Confidence            8877777754433         489999999999999999985 57889999999999999955  55667766653

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=1.1e-29  Score=236.08  Aligned_cols=213  Identities=39%  Similarity=0.593  Sum_probs=174.9

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEec
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC  171 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~  171 (517)
                      ||+|++|.||+|....     .++.+++|++.......  ....+.+|+.+++.+.|++|+++++++......+++|||+
T Consensus         1 l~~g~~~~v~~~~~~~-----~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~   73 (215)
T cd00180           1 LGEGGFGTVYLARDKK-----TGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYC   73 (215)
T ss_pred             CCcCCceEEEEEEecC-----CCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecC
Confidence            6899999999999875     56889999998664321  3456777999999999999999999999999999999999


Q ss_pred             CCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceE
Q 010140          172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL  251 (517)
Q Consensus       172 ~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NIL  251 (517)
                      +|++|.+++.... ..+...                            ....++.+++.+|.+||++|++|+||+|.||+
T Consensus        74 ~~~~l~~~~~~~~-~~~~~~----------------------------~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~  124 (215)
T cd00180          74 EGGSLKDLLKENE-GKLSED----------------------------EILRILLQILEGLEYLHSNGIIHRDLKPENIL  124 (215)
T ss_pred             CCCcHHHHHHhcc-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeccCCCHhhEE
Confidence            9999999887642 112211                            12367899999999999999999999999999


Q ss_pred             Ecc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 010140          252 VRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQV  330 (517)
Q Consensus       252 l~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (517)
                      ++. ++.++|+|||.+........                                                        
T Consensus       125 ~~~~~~~~~l~d~~~~~~~~~~~~--------------------------------------------------------  148 (215)
T cd00180         125 LDSDNGKVKLADFGLSKLLTSDKS--------------------------------------------------------  148 (215)
T ss_pred             EeCCCCcEEEecCCceEEccCCcc--------------------------------------------------------
Confidence            999 89999999998743221000                                                        


Q ss_pred             CCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHH
Q 010140          331 DGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI  409 (517)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i  409 (517)
                                            ......+...|++||.+... .++.+.|+|++|+++++|                   
T Consensus       149 ----------------------~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------  187 (215)
T cd00180         149 ----------------------LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------  187 (215)
T ss_pred             ----------------------hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------
Confidence                                  01223578889999999887 788999999999999999                   


Q ss_pred             hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       410 ~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                                           ..+.+++.+||..||.+||++.    ++++|+
T Consensus       188 ---------------------~~~~~~l~~~l~~~p~~R~~~~----~l~~~~  215 (215)
T cd00180         188 ---------------------PELKDLIRKMLQKDPEKRPSAK----EILEHL  215 (215)
T ss_pred             ---------------------HHHHHHHHHHhhCCcccCcCHH----HHhhCC
Confidence                                 1389999999999999999997    888874

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.4e-31  Score=296.04  Aligned_cols=236  Identities=17%  Similarity=0.184  Sum_probs=149.9

Q ss_pred             hcCC-CCccceeeee-------ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccch
Q 010140          145 MLDH-PFLPTLYAEF-------EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVT  216 (517)
Q Consensus       145 ~l~H-pnIv~l~~~~-------~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  216 (517)
                      .++| +||++++++|       .....++++|||+ +++|.+++.... ..++..+                        
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~-~~~~~~~------------------------   81 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD-RSVDAFE------------------------   81 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc-ccccHHH------------------------
Confidence            3445 5888888888       2335678899988 779999986431 2233322                        


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCC
Q 010140          217 LFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSC  296 (517)
Q Consensus       217 ~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (517)
                          ++.|++||+.||+|||++|||||||||+||||+..|.+|++|||++...........                   
T Consensus        82 ----~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~-------------------  138 (793)
T PLN00181         82 ----CFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATT-------------------  138 (793)
T ss_pred             ----HHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcc-------------------
Confidence                247889999999999999999999999999999888999999988743211000000                   


Q ss_pred             CCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCc
Q 010140          297 ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGS  376 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~  376 (517)
                                            +..++...+..............  .....+........+||+.|||||++.+..|+.
T Consensus       139 ----------------------ki~DfG~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~  194 (793)
T PLN00181        139 ----------------------KSREIGSSRREEILSERRIEKLE--EVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNC  194 (793)
T ss_pred             ----------------------cccccccccccccccccchhhhh--ccccCCCcccccccCCCcceEChhhhccCCCCc
Confidence                                  00000000000000000000000  000000011123357999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          377 AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       377 ~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      ++|||||||+||||++|.+|+....  ..+..+....  .|...      ........+++.+||+.||.+||++.    
T Consensus       195 ~sDVwSlGviL~ELl~~~~~~~~~~--~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~L~~~P~~Rps~~----  260 (793)
T PLN00181        195 ASDVYRLGVLLFELFCPVSSREEKS--RTMSSLRHRV--LPPQI------LLNWPKEASFCLWLLHPEPSCRPSMS----  260 (793)
T ss_pred             hhhhhhHHHHHHHHhhCCCchhhHH--HHHHHHHHhh--cChhh------hhcCHHHHHHHHHhCCCChhhCcChH----
Confidence            9999999999999999999876432  1222222111  11110      01122467899999999999999998    


Q ss_pred             HhhcCCCcCCC
Q 010140          457 EIKRHEFFKGI  467 (517)
Q Consensus       457 ell~hp~f~~~  467 (517)
                      |+++||||...
T Consensus       261 eil~h~~~~~~  271 (793)
T PLN00181        261 ELLQSEFINEP  271 (793)
T ss_pred             HHhhchhhhhh
Confidence            99999999763

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.97  E-value=1.8e-29  Score=238.07  Aligned_cols=215  Identities=42%  Similarity=0.639  Sum_probs=171.9

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      |.+.+.||.|++|.||+|...+     +++.+|+|.+......  .....+..|+..++.++|+||+++++++......+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~-----~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~   73 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKG-----TGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLY   73 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcC-----CCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceE
Confidence            6788999999999999999876     5678999999865432  24566777999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +++||+++++|.+++...... +...                            ....++.|++.+|.|||+++++|+||
T Consensus        74 ~v~e~~~~~~L~~~~~~~~~~-~~~~----------------------------~~~~~~~~l~~~l~~lh~~~i~h~di  124 (225)
T smart00221       74 LVMEYCEGGDLFDYLRKKGGK-LSEE----------------------------EARFYLRQILEALEYLHSLGIVHRDL  124 (225)
T ss_pred             EEEeccCCCCHHHHHHhcccC-CCHH----------------------------HHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            999999999999988764321 1111                            12367889999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      +|.||+++.++.++|+|||++.......                                                    
T Consensus       125 ~~~ni~v~~~~~~~l~d~g~~~~~~~~~----------------------------------------------------  152 (225)
T smart00221      125 KPENILLGMDGLVKLADFGLARFIHRDL----------------------------------------------------  152 (225)
T ss_pred             CHHHEEEcCCCCEEEeeCceeeEecCcc----------------------------------------------------
Confidence            9999999999999999999874332100                                                    


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh-cCCCCCccchHHHHHHHHHHHhhCCCCCCC-CChH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKG-ENNE  403 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l-~~~~~~~~~DiWSlGvil~elltG~~Pf~~-~~~~  403 (517)
                                               ........++..|++||.+ ....++.++|||+||+++|+|++|+.||.. .+..
T Consensus       153 -------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~  207 (225)
T smart00221      153 -------------------------AALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFT  207 (225)
T ss_pred             -------------------------cccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhH
Confidence                                     0011233578889999999 666678899999999999999999999987 4444


Q ss_pred             -HHHHHHhcCC
Q 010140          404 -KTLINILKKP  413 (517)
Q Consensus       404 -~~~~~i~~~~  413 (517)
                       .+...+..+.
T Consensus       208 ~~~~~~~~~~~  218 (225)
T smart00221      208 SLLSDVWSFGV  218 (225)
T ss_pred             HHHHHHHhcCC
Confidence             5555555554

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.96  E-value=1.9e-30  Score=273.85  Aligned_cols=254  Identities=36%  Similarity=0.643  Sum_probs=192.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      -++|..++.|..|+||.||+++++.     +.+.+|+|+- ++.+..++          ||.....|.+|          
T Consensus        82 e~df~~IklisngAygavylvrh~~-----trqrfa~kiN-kq~lilRn----------ilt~a~npfvv----------  135 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKE-----TRQRFAMKIN-KQNLILRN----------ILTFAGNPFVV----------  135 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccc-----cccchhhccc-ccchhhhc----------cccccCCccee----------
Confidence            4789999999999999999999987     6788999554 33222111          44445555555          


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                                 ||-...++..+  .++                                    .+++.+++|||+.||+|
T Consensus       136 -----------gDc~tllk~~g--~lP------------------------------------vdmvla~Eylh~ygivh  166 (1205)
T KOG0606|consen  136 -----------GDCATLLKNIG--PLP------------------------------------VDMVLAVEYLHSYGIVH  166 (1205)
T ss_pred             -----------chhhhhcccCC--CCc------------------------------------chhhHHhHhhccCCeec
Confidence                       34333332211  111                                    35588999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCccccccccc-ccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPK-LLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||+||+|.+|+.-|++|++|||+++.....-. .+..                                           
T Consensus       167 rdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~e-------------------------------------------  203 (1205)
T KOG0606|consen  167 RDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKE-------------------------------------------  203 (1205)
T ss_pred             CCCCCCcceeeecccccccchhhhhhhhhhccchhhh-------------------------------------------
Confidence            99999999999999999999999854321000 0000                                           


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                           ...............+|||.|.|||++..+.|+..+|+|++|+|+||.+.|..||.+++
T Consensus       204 ---------------------g~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdt  262 (1205)
T KOG0606|consen  204 ---------------------GHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT  262 (1205)
T ss_pred             ---------------------cchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCC
Confidence                                 00000001122345689999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVP  481 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~  481 (517)
                      +++++..++.....+|........      +++++|.++|+.+|..|.... .+-++++|+||+..||.-+-+++.+++|
T Consensus       263 peelfg~visd~i~wpE~dea~p~------Ea~dli~~LL~qnp~~Rlgt~-ga~evk~h~ff~~LDw~~llRqkaefvp  335 (1205)
T KOG0606|consen  263 PEELFGQVISDDIEWPEEDEALPP------EAQDLIEQLLRQNPLCRLGTG-GALEVKQHGFFQLLDWKSLLRQKAEFVP  335 (1205)
T ss_pred             HHHHHhhhhhhhccccccCcCCCH------HHHHHHHHHHHhChHhhcccc-hhhhhhhccceeecccchhhhhhccccc
Confidence            999999999999999887666555      499999999999999999885 6669999999999999966555555544


Q ss_pred             C
Q 010140          482 N  482 (517)
Q Consensus       482 ~  482 (517)
                      .
T Consensus       336 q  336 (1205)
T KOG0606|consen  336 Q  336 (1205)
T ss_pred             c
Confidence            3

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-29  Score=268.20  Aligned_cols=274  Identities=26%  Similarity=0.343  Sum_probs=191.9

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEE
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCL  166 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l  166 (517)
                      .....+|.|++|.|+.+...........+.+++| ... ....+.....+..|..+-..+.||||+..+..+.+....+-
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~-~~~-~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~  398 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVR-VKP-TESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQ  398 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcc-cCC-cccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchh
Confidence            5678899999998888877753322223333333 111 11222223336668888888999999988887777666666


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      +||||++ ||+.++...  ..+...++                            ..++.||+.||+|||+.||.|||||
T Consensus       399 ~mE~~~~-Dlf~~~~~~--~~~~~~e~----------------------------~c~fKqL~~Gv~y~h~~GiahrdlK  447 (601)
T KOG0590|consen  399 SMEYCPY-DLFSLVMSN--GKLTPLEA----------------------------DCFFKQLLRGVKYLHSMGLAHRDLK  447 (601)
T ss_pred             hhhcccH-HHHHHHhcc--cccchhhh----------------------------hHHHHHHHHHHHHHHhcCceeccCc
Confidence            6999999 999988764  12222222                            3577999999999999999999999


Q ss_pred             CCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccc
Q 010140          247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTI  326 (517)
Q Consensus       247 p~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      |+|++++.+|.+||+|||.+..+...                                                      
T Consensus       448 ~enll~~~~g~lki~Dfg~~~vf~~~------------------------------------------------------  473 (601)
T KOG0590|consen  448 LENLLVTENGILKIIDFGAASVFRYP------------------------------------------------------  473 (601)
T ss_pred             cccEEEecCCceEEeecCcceeeccC------------------------------------------------------
Confidence            99999999999999999987332210                                                      


Q ss_pred             ccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCc-cchHHHHHHHHHHHhhCCCCCCCCChHHH
Q 010140          327 REQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGS-AVDWWTLGVFLYEMLYGTTPFKGENNEKT  405 (517)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~-~~DiWSlGvil~elltG~~Pf~~~~~~~~  405 (517)
                                          .+........++|+..|+|||++.+..|.+ ..||||.|++++.|++|+.||......+.
T Consensus       474 --------------------~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~  533 (601)
T KOG0590|consen  474 --------------------WEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDN  533 (601)
T ss_pred             --------------------cchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccccccccc
Confidence                                000012345678999999999999999855 78999999999999999999986544332


Q ss_pred             HH-HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          406 LI-NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       406 ~~-~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      .. .... ...+........-.-..+...+.+|.+||+.||.+|.|++    +|++.+||+.++-+.+
T Consensus       534 ~~~~~~~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~----~i~~d~W~~~i~~c~v  596 (601)
T KOG0590|consen  534 SFKTNNY-SDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIE----QILNDEWIRSIECCHV  596 (601)
T ss_pred             chhhhcc-ccccccccChHHHHHhchhhHHHHHHHHccCChhheecHH----HHhhChHhhhcceEEe
Confidence            21 1111 0000000101100111223578999999999999999998    9999999999876544

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=6.9e-28  Score=219.09  Aligned_cols=149  Identities=23%  Similarity=0.198  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       222 ~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      +.|+.||+.||+|||+++      ||+|||++.++.+|+  ||+++....                              
T Consensus        20 ~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~------------------------------   61 (176)
T smart00750       20 WAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTP------------------------------   61 (176)
T ss_pred             HHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeecc------------------------------
Confidence            378899999999999999      999999999999999  998732210                              


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHH
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWW  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiW  381 (517)
                                                                           ....||+.|||||++.+..++.++|||
T Consensus        62 -----------------------------------------------------~~~~g~~~y~aPE~~~~~~~~~~~Diw   88 (176)
T smart00750       62 -----------------------------------------------------EQSRVDPYFMAPEVIQGQSYTEKADIY   88 (176)
T ss_pred             -----------------------------------------------------ccCCCcccccChHHhcCCCCcchhhHH
Confidence                                                                 011588999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          382 TLGVFLYEMLYGTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       382 SlGvil~elltG~~Pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ||||++|||++|+.||...... ..+..+......................++.++|.+||..||.+||++.    |+++
T Consensus        89 SlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~----~ll~  164 (176)
T smart00750       89 SLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAAN----HYLA  164 (176)
T ss_pred             HHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHH----HHHH
Confidence            9999999999999999765442 3333333322221111111111111112589999999999999999998    9999


Q ss_pred             CCCcC
Q 010140          461 HEFFK  465 (517)
Q Consensus       461 hp~f~  465 (517)
                      |+|+.
T Consensus       165 ~~~~~  169 (176)
T smart00750      165 HCRAL  169 (176)
T ss_pred             HHHHH
Confidence            99875

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=7.3e-27  Score=232.60  Aligned_cols=145  Identities=23%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH--HHHHHHhHHHHHHHHHHhcCCCCccc-eee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKVILTMLDHPFLPT-LYA  156 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~-l~~  156 (517)
                      +...++|.+.+.||+|+||+||+|+++..    ++..+|||++.....  ........+.+|+.+|+.++|+||+. +++
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~----~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~   89 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGD----PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA   89 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCC----CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence            34567899999999999999999987642    356689998653211  11223456788999999999999985 443


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .    +..|||||||+|++|... ...  .     .                             ..++.|++.||.|||
T Consensus        90 ~----~~~~LVmE~~~G~~L~~~-~~~--~-----~-----------------------------~~~~~~i~~aL~~lH  128 (365)
T PRK09188         90 T----GKDGLVRGWTEGVPLHLA-RPH--G-----D-----------------------------PAWFRSAHRALRDLH  128 (365)
T ss_pred             c----CCcEEEEEccCCCCHHHh-Ccc--c-----h-----------------------------HHHHHHHHHHHHHHH
Confidence            2    457999999999999621 100  0     0                             145689999999999


Q ss_pred             hcCceeccC-CCCceEEccCCcEEeccCCCcccc
Q 010140          237 MMGIVYRDL-KPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       237 ~~~iiHrDL-Kp~NILl~~~~~vkL~DFGls~~~  269 (517)
                      ++||+|||| ||+|||++.++.+||+|||+|+.+
T Consensus       129 ~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188        129 RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             HCCCeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            999999999 999999999999999999999654

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.94  E-value=3e-25  Score=220.44  Aligned_cols=268  Identities=38%  Similarity=0.536  Sum_probs=198.1

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC-CccceeeeeecCcee
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP-FLPTLYAEFEASHYS  164 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp-nIv~l~~~~~~~~~~  164 (517)
                      |.+.+.||.|+||.||++.+.        ..+++|.+.............+.+|+.++..+.|+ +|+++++.+......
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--------~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~   73 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--------KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSL   73 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--------cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEE
Confidence            788999999999999999876        56899999877554333567778899999999988 799999999888889


Q ss_pred             EEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          165 CLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +++++++.+++|.+++...... .+.                            ......++.|++.+|.|+|+.+++||
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~~H~~~~~hr  125 (384)
T COG0515          74 YLVMEYVDGGSLEDLLKKIGRKGPLS----------------------------ESEALFILAQILSALEYLHSKGIIHR  125 (384)
T ss_pred             EEEEecCCCCcHHHHHHhcccccCCC----------------------------HHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            9999999999999666543211 111                            12234788999999999999999999


Q ss_pred             cCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          244 DLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       244 DLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||||+||+++..+ .++++|||+++.........                                              
T Consensus       126 d~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~----------------------------------------------  159 (384)
T COG0515         126 DIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTS----------------------------------------------  159 (384)
T ss_pred             CCCHHHeeecCCCCeEEEeccCcceecCCCCccc----------------------------------------------
Confidence            9999999999988 79999999984222100000                                              


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                .........+||..|+|||.+.+   ..+....|+||+|++++++++|..||..
T Consensus       160 --------------------------~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~  213 (384)
T COG0515         160 --------------------------SIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEG  213 (384)
T ss_pred             --------------------------cccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence                                      00012345679999999999998   5689999999999999999999999887


Q ss_pred             CCh----HHHHHHHhcCCCC-CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          400 ENN----EKTLINILKKPLT-FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       400 ~~~----~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ...    ......+...... .......... ......+.+++.+++..+|..|.+..    +...++|...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~~~  280 (384)
T COG0515         214 EKNSSATSQTLKIILELPTPSLASPLSPSNP-ELISKAASDLLKKLLAKDPKNRLSSS----SDLSHDLLAH  280 (384)
T ss_pred             CCccccHHHHHHHHHhcCCcccccccCcccc-chhhHHHHHHHHHHHhcCchhcCCHH----HHhhchHhhC
Confidence            764    3444444433322 1111111100 01112478999999999999999987    6666655543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.94  E-value=2.8e-26  Score=214.31  Aligned_cols=219  Identities=23%  Similarity=0.360  Sum_probs=176.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      -.|+++++||+|+||++++|+..-     .++.||||.-...     ....++..|.+..+.| ..++|...|.+...+.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~-----nne~VAIKfEPrk-----S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~   97 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLY-----NNEPVAIKFEPRK-----SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGK   97 (449)
T ss_pred             ccceeccccccCcceeeecccccc-----cCceEEEEecccc-----CCcchHHHHHHHHHHHcCCCCCCceeeeccccc
Confidence            369999999999999999998775     6899999987654     2334555588888887 5799999999989999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      +-.||||++ |.+|.+++.-.. ++|....+.                            .++.|++.-++|+|++.+|.
T Consensus        98 ~NiLVidLL-GPSLEDLFD~Cg-R~FSvKTV~----------------------------miA~Qmi~rie~vH~k~LIY  147 (449)
T KOG1165|consen   98 YNILVIDLL-GPSLEDLFDLCG-RRFSVKTVA----------------------------MIAKQMITRIEYVHEKDLIY  147 (449)
T ss_pred             hhhhhhhhh-CcCHHHHHHHhc-CcccHHhHH----------------------------HHHHHHHHHHHHHHhcceee
Confidence            999999999 999999887653 455554443                            67899999999999999999


Q ss_pred             ccCCCCceEEccCC-----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          243 RDLKPENVLVREDG-----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       243 rDLKp~NILl~~~~-----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      |||||+|+||...+     .+.|+|||+|+.+.+....                                          
T Consensus       148 RDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tk------------------------------------------  185 (449)
T KOG1165|consen  148 RDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTK------------------------------------------  185 (449)
T ss_pred             cccCccceeecCCCCCCCceEEEEeccchhhhcCcccc------------------------------------------
Confidence            99999999997544     5899999999765432211                                          


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                   .........+..||..||+-....|...+..-|+=|||-++++.|-|..||
T Consensus       186 -----------------------------qHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPW  236 (449)
T KOG1165|consen  186 -----------------------------QHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPW  236 (449)
T ss_pred             -----------------------------ccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcc
Confidence                                         111233445677999999999999999999999999999999999999999


Q ss_pred             CCC---ChHHHHHHHhcCC
Q 010140          398 KGE---NNEKTLINILKKP  413 (517)
Q Consensus       398 ~~~---~~~~~~~~i~~~~  413 (517)
                      .|.   +..+.+++|-...
T Consensus       237 QGLKA~tnK~kYeKIGe~K  255 (449)
T KOG1165|consen  237 QGLKADTNKEKYEKIGETK  255 (449)
T ss_pred             ccccCcchHHHHHHhcccc
Confidence            875   4456667765443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-25  Score=223.97  Aligned_cols=258  Identities=25%  Similarity=0.338  Sum_probs=185.6

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC----CCccceeeee-e
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH----PFLPTLYAEF-E  159 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H----pnIv~l~~~~-~  159 (517)
                      +|.+.++||+|+||.||+|.+....    ...+|+|+.......   ....+..|+.+|..+..    +++..+++.+ .
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~----~~~~a~K~e~~~~~~---~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~   91 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEK----NKEYAKKLEKKELGS---KPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRS   91 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCC----CeeEEEEEEEecccC---CCccchhHHHHHHHHhhhcCCCCCCEEEEeccC
Confidence            8999999999999999999987631    467999998754211   11145568999988863    6899999999 5


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .+.+.|+||+.+ |.+|.++....+.+.++...+.                            .++.|++.+|++||+.|
T Consensus        92 ~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l----------------------------~ia~q~l~~l~~lH~~G  142 (322)
T KOG1164|consen   92 TEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVL----------------------------RIAIQNLNALEDLHSKG  142 (322)
T ss_pred             CCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHH----------------------------HHHHHHHHHHHHHHhcC
Confidence            888999999999 9999998877655555555444                            67899999999999999


Q ss_pred             ceeccCCCCceEEccC-----CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          240 IVYRDLKPENVLVRED-----GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       240 iiHrDLKp~NILl~~~-----~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      +|||||||+|+++...     ..+.|.|||+++.+.......                                      
T Consensus       143 ~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~--------------------------------------  184 (322)
T KOG1164|consen  143 FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSG--------------------------------------  184 (322)
T ss_pred             cccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCC--------------------------------------
Confidence            9999999999999754     369999999996322110000                                      


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                   .. ..+.......+.||..|+++.+..+...+.+.|+||++.++.+|+.|.
T Consensus       185 -----------------------------~~-~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~  234 (322)
T KOG1164|consen  185 -----------------------------GN-LRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGS  234 (322)
T ss_pred             -----------------------------cc-cccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCC
Confidence                                         00 000001123457999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCC--CCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPR--IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .||.+........+..........  ......      ..+.++...+-..+...+|...
T Consensus       235 LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~Pdy~  288 (322)
T KOG1164|consen  235 LPWEALEMTDLKSKFEKDPRKLLTDRFGDLKP------EEFAKILEYIDSLDYEDKPDYE  288 (322)
T ss_pred             CCCccccccchHHHHHHHhhhhccccccCCCh------HHHHHHHHHhhccCCcCCCCHH
Confidence            999876643333322221111111  011111      1356666666667888888774

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=3.6e-26  Score=204.69  Aligned_cols=225  Identities=22%  Similarity=0.327  Sum_probs=176.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~  159 (517)
                      +..+.|.++++||+|+||.+|+|....     .+..||||+-...     ....++..|..+.+.|+ ...|..+..++.
T Consensus        12 iv~gky~lvrkiGsGSFGdIy~~~~i~-----~ge~VAiK~Es~~-----a~hpqL~yEskvY~iL~~g~GiP~i~~y~~   81 (341)
T KOG1163|consen   12 IVGGKYKLVRKIGSGSFGDIYLGISIT-----SGEEVAIKLESSK-----AKHPQLLYESKVYRILQGGVGIPHIRHYGT   81 (341)
T ss_pred             eeccceEEEEeecCCchhheeeeeecc-----CCceEEEEeeccc-----CCCcchhHHHHHHHHhccCCCCchhhhhcc
Confidence            456889999999999999999999887     7889999997654     33455667999999986 467888888889


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +..+-.|||+++ |.+|.+++.-.. .++....+                            ..++-|++.-|+|+|.++
T Consensus        82 e~~ynvlVMdLL-GPsLEdLfnfC~-R~ftmkTv----------------------------LMLaDQml~RiEyvH~r~  131 (341)
T KOG1163|consen   82 EKDYNVLVMDLL-GPSLEDLFNFCS-RRFTMKTV----------------------------LMLADQMLSRIEYVHLRN  131 (341)
T ss_pred             ccccceeeeecc-CccHHHHHHHHh-hhhhHHhH----------------------------HHHHHHHHHHHHHHHhhc
Confidence            999999999999 999998876432 23333222                            256789999999999999


Q ss_pred             ceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          240 IVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       240 iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +|||||||+|+|..-   ...+.|+|||+|+++.+....                                         
T Consensus       132 fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~-----------------------------------------  170 (341)
T KOG1163|consen  132 FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTR-----------------------------------------  170 (341)
T ss_pred             cccccCCccceeeccccccceEEEEeccchhhhcccccc-----------------------------------------
Confidence            999999999999863   347999999999776532211                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                    ............||..|.+-....+...+..-|+=|+|.+|..+.-|..|
T Consensus       171 ------------------------------~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LP  220 (341)
T KOG1163|consen  171 ------------------------------QHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLP  220 (341)
T ss_pred             ------------------------------ccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCc
Confidence                                          01112334566899999999988888888999999999999999999999


Q ss_pred             CCCCCh---HHHHHHHhcCCCCC
Q 010140          397 FKGENN---EKTLINILKKPLTF  416 (517)
Q Consensus       397 f~~~~~---~~~~~~i~~~~~~~  416 (517)
                      |.+...   .+.+.+|.+.....
T Consensus       221 WQglka~tk~QKyEkI~EkK~s~  243 (341)
T KOG1163|consen  221 WQGLKAATKKQKYEKISEKKMST  243 (341)
T ss_pred             ccccchhhHHHHHHHHHHhhcCC
Confidence            998654   34556666554443

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.91  E-value=1.5e-24  Score=201.17  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhH------HHHHHHHHHhcCCCCcccee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHR------ADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~------~~~E~~il~~l~HpnIv~l~  155 (517)
                      ..++|++++.||.|+||.||++...       +..+|||++............+      +.+|+..+.++.||+|..+.
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~~-------~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~  101 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDTD-------YGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLN  101 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEecC-------CCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcce
Confidence            3578999999999999999996542       3469999997665443343334      57899999999999999999


Q ss_pred             eeeecC--------ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHH
Q 010140          156 AEFEAS--------HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE  227 (517)
Q Consensus       156 ~~~~~~--------~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  227 (517)
                      +++...        +..+|||||++|.+|.++...      .  +                              ....+
T Consensus       102 d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~------~--~------------------------------~~~~~  143 (232)
T PRK10359        102 DFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEI------S--E------------------------------DVKAK  143 (232)
T ss_pred             EeeeecccccccccCCeEEEEEEECCccHHHhhhc------c--H------------------------------HHHHH
Confidence            887643        357999999999999775211      0  0                              22469


Q ss_pred             HHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       228 i~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      |+.+|..||..|++||||||+||+++.+| ++|+|||..
T Consensus       144 i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~  181 (232)
T PRK10359        144 IKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGK  181 (232)
T ss_pred             HHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCc
Confidence            99999999999999999999999999988 999999986

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=3.9e-23  Score=187.54  Aligned_cols=203  Identities=21%  Similarity=0.234  Sum_probs=139.8

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH-HHhHHHHHHHHHHhcC-CCCccceeeeeecCcee
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-KLHRADMEKVILTMLD-HPFLPTLYAEFEASHYS  164 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~  164 (517)
                      .+...|++|+||+||++..       .+..++.+.+.......+. ....+.+|+++|++|+ |++|++++++    +..
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-------~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~   73 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-------GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGR   73 (218)
T ss_pred             ccceeecCCCcceEEEeec-------CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCE
Confidence            4667899999999997754       2356676666544332221 2235778999999995 5889999886    346


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |++|||+.|.+|.+.+...         .                            ..++.|++.+|.++|++||+|||
T Consensus        74 ~lvmeyI~G~~L~~~~~~~---------~----------------------------~~~~~qi~~~L~~lH~~GIvHrD  116 (218)
T PRK12274         74 HLDRSYLAGAAMYQRPPRG---------D----------------------------LAYFRAARRLLQQLHRCGVAHND  116 (218)
T ss_pred             EEEEeeecCccHHhhhhhh---------h----------------------------HHHHHHHHHHHHHHHHCcCccCC
Confidence            9999999999986532110         0                            13457999999999999999999


Q ss_pred             C-CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          245 L-KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       245 L-Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      | ||+|||++.+|.++|+|||+|.......... ......++....                                  
T Consensus       117 L~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~-r~L~~rDl~~ll----------------------------------  161 (218)
T PRK12274        117 LAKEANWLVQEDGSPAVIDFQLAVRGNPRARWM-RLLAREDLRHLL----------------------------------  161 (218)
T ss_pred             CCCcceEEEcCCCCEEEEECCCceecCCcchHH-HHHHHHHHHHHH----------------------------------
Confidence            9 7999999999999999999996433211100 000000000000                                  


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCC-ccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHG-SAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~-~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                    ......++.|++|+..... ..+ ...++++.|+-+|.++|+..++.+++
T Consensus       162 ------------------------------k~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        162 ------------------------------KHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             ------------------------------HHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence                                          0011367889999876443 233 56788899999999999999987654


Q ss_pred             h
Q 010140          402 N  402 (517)
Q Consensus       402 ~  402 (517)
                      +
T Consensus       212 ~  212 (218)
T PRK12274        212 E  212 (218)
T ss_pred             C
Confidence            3

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=8.8e-24  Score=201.85  Aligned_cols=278  Identities=19%  Similarity=0.247  Sum_probs=173.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCC------------------------------CCCCceeeeeecchHHH--
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV------------------------------GLPQCFYAMKVVDREAL--  127 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~------------------------------~~~~~~vAiK~i~~~~~--  127 (517)
                      .+.+++|+|+..||+|....||.++......                              +...-+.|||.+-.-..  
T Consensus       153 kFtiddyeiG~~igkGC~AaVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmMfN~~~~s  232 (598)
T KOG4158|consen  153 KFTIDDYEIGEFIGKGCNAAVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMMFNFEHDS  232 (598)
T ss_pred             ccchhhhcccchhhccchhhhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHhcccccCC
Confidence            4667899999999999999999987653100                              00112456665421100  


Q ss_pred             HHHHHHhHHHHHH------H-----------HHH----h-cCCCCccceeeeeec-------------------------
Q 010140          128 AIRKKLHRADMEK------V-----------ILT----M-LDHPFLPTLYAEFEA-------------------------  160 (517)
Q Consensus       128 ~~~~~~~~~~~E~------~-----------il~----~-l~HpnIv~l~~~~~~-------------------------  160 (517)
                      .....++.+-+|.      .           .+.    + ..|||||++++.|.+                         
T Consensus       233 ~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~  312 (598)
T KOG4158|consen  233 GDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGA  312 (598)
T ss_pred             chHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccceeccccc
Confidence            0111122222222      0           011    1 269999999998843                         


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        +..+|+||..+ ..+|.+++..+..                               ..+.-+.++.|+++|+.|||.+
T Consensus       313 g~~~tlylvMkrY-~~tLr~yl~~~~~-------------------------------s~r~~~~~laQlLEav~hL~~h  360 (598)
T KOG4158|consen  313 GEPKTLYLVMKRY-RQTLREYLWTRHR-------------------------------SYRTGRVILAQLLEAVTHLHKH  360 (598)
T ss_pred             CCCceEEEehhcc-hhhHHHHHhcCCC-------------------------------chHHHHHHHHHHHHHHHHHHHc
Confidence              23479999988 5689888765421                               1222245779999999999999


Q ss_pred             CceeccCCCCceEEc--cCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          239 GIVYRDLKPENVLVR--EDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       239 ~iiHrDLKp~NILl~--~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||.|||||.+||||.  +|+  .+.|+|||.+-..+...-                                        
T Consensus       361 gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGl----------------------------------------  400 (598)
T KOG4158|consen  361 GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGL----------------------------------------  400 (598)
T ss_pred             cchhhcccccceEEEecCCCCcEEEEcccceeeecccccc----------------------------------------
Confidence            999999999999984  444  578999998722211000                                        


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC------CccchHHHHHHHHH
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH------GSAVDWWTLGVFLY  388 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~------~~~~DiWSlGvil~  388 (517)
                                                      .-+..+..-..-|.-.-||||+....+-      -.++|.|+.|.+.|
T Consensus       401 --------------------------------qlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaY  448 (598)
T KOG4158|consen  401 --------------------------------QLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAY  448 (598)
T ss_pred             --------------------------------ccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHH
Confidence                                            0000111122346778899999865321      24899999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |++....||.+..+..+-.+-. ..-..|......      ++.+++|+..+|+.||.+|++.. .+..+++---|..-+
T Consensus       449 EIfg~~NPFY~rGem~L~~r~Y-qe~qLPalp~~v------pp~~rqlV~~lL~r~pskRvsp~-iAANvl~LsLw~~~~  520 (598)
T KOG4158|consen  449 EIFGRSNPFYKRGEMLLDTRTY-QESQLPALPSRV------PPVARQLVFDLLKRDPSKRVSPN-IAANVLNLSLWRMGE  520 (598)
T ss_pred             HHhccCCcccccchheechhhh-hhhhCCCCcccC------ChHHHHHHHHHhcCCccccCCcc-HHHhHHHHHHhcCch
Confidence            9999999998854332211111 111222222222      22489999999999999999984 444666554444444


Q ss_pred             c
Q 010140          469 W  469 (517)
Q Consensus       469 ~  469 (517)
                      |
T Consensus       521 ~  521 (598)
T KOG4158|consen  521 D  521 (598)
T ss_pred             H
Confidence            4

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.89  E-value=2.3e-23  Score=198.94  Aligned_cols=240  Identities=25%  Similarity=0.294  Sum_probs=146.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC----------CCCccce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD----------HPFLPTL  154 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~----------HpnIv~l  154 (517)
                      .+...+.||.|+++.||.+++..     +++.+|+|+............+.+.+|......+.          |-.++..
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~-----t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P   87 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVE-----TGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVP   87 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETT-----TTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---
T ss_pred             EEEEccccccCCceEEEEEEEcc-----CCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEee
Confidence            46788999999999999999987     78999999975443333445566665654443332          2122222


Q ss_pred             eeeee---------cC---c-----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchh
Q 010140          155 YAEFE---------AS---H-----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTL  217 (517)
Q Consensus       155 ~~~~~---------~~---~-----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (517)
                      ++...         ..   .     +.+++|+-+ .+||.+++...........                        ..
T Consensus        88 ~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~------------------------~l  142 (288)
T PF14531_consen   88 LDLLRIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHS------------------------PL  142 (288)
T ss_dssp             SEEEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSH------------------------HH
T ss_pred             eEEEEEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccc------------------------hh
Confidence            23221         11   1     347888888 6798877543100000000                        01


Q ss_pred             hhhh-hHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCC
Q 010140          218 FFNY-RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSC  296 (517)
Q Consensus       218 ~~~~-~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (517)
                      .... ..+..|+++.+++||+.||+|+||||+|++++.+|.++|+||+.....+.                         
T Consensus       143 ~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~-------------------------  197 (288)
T PF14531_consen  143 AFAARLSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGT-------------------------  197 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTE-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCc-------------------------
Confidence            1111 23568999999999999999999999999999999999999987632210                         


Q ss_pred             CCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC----
Q 010140          297 ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ----  372 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~----  372 (517)
                                                                              .......+..|.+||.....    
T Consensus       198 --------------------------------------------------------~~~~~~~~~~~~PPe~~~~~~~~~  221 (288)
T PF14531_consen  198 --------------------------------------------------------RYRCSEFPVAFTPPELESCAGQFG  221 (288)
T ss_dssp             --------------------------------------------------------EEEGGGS-TTTS-HHHHHHHTSCH
T ss_pred             --------------------------------------------------------eeeccCCCcccCChhhhhhhcccC
Confidence                                                                    00001245779999987442    


Q ss_pred             ----CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccc
Q 010140          373 ----GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       373 ----~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  448 (517)
                          .++.+.|.|+||+++|.|++|..||...........      .+....       ..+..+++||.+||++||.+|
T Consensus       222 ~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~------~f~~C~-------~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  222 QNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW------DFSRCR-------DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG------GGTTSS----------HHHHHHHHHHT-SSGGGS
T ss_pred             cccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc------cchhcC-------CcCHHHHHHHHHHccCCcccC
Confidence                368899999999999999999999986543221110      111111       122358999999999999998

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-24  Score=226.95  Aligned_cols=243  Identities=21%  Similarity=0.296  Sum_probs=171.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH--HHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA--LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +|...+.||++.|=+|.+|+++.       ..|+||++-+..  ...+. ..+..+|++ ...++|||++.+.-+...+.
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~e-------G~vVvKVFvk~~p~~sL~~-~~qrL~~ik-~~l~~~pn~lPfqk~~~t~k   94 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDRE-------GLVVVKVFVKQDPTISLRP-FKQRLEEIK-FALMKAPNCLPFQKVLVTDK   94 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCC-------ceEEEEEEeccCCCCCchH-HHHHHHHHH-HHhhcCCcccchHHHHHhhH
Confidence            78999999999999999998875       348999986543  11222 223333555 66679999999988888888


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|||-+|. ..+|++.+..++.                              +...+.+.|+-||+.||.-+|..||+|
T Consensus        95 AAylvRqyv-khnLyDRlSTRPF------------------------------L~~iEKkWiaFQLL~al~qcH~~gVcH  143 (1431)
T KOG1240|consen   95 AAYLVRQYV-KHNLYDRLSTRPF------------------------------LVLIEKKWIAFQLLKALSQCHKLGVCH  143 (1431)
T ss_pred             HHHHHHHHH-hhhhhhhhccchH------------------------------HHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence            899999999 5599988766431                              112233568899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      +|||.|||||+.-+-+.|+||..-+..-...+.+.                                             
T Consensus       144 GDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPa---------------------------------------------  178 (1431)
T KOG1240|consen  144 GDIKSENILITSWNWLYLTDFASFKPTYLPEDNPA---------------------------------------------  178 (1431)
T ss_pred             cccccceEEEeeechhhhhcccccCCccCCCCCcc---------------------------------------------
Confidence            99999999999888899999986543322111100                                             


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC----------C-CCccchHHHHHHHHHHHh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ----------G-HGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~----------~-~~~~~DiWSlGvil~ell  391 (517)
                                   +...            .- .+-..-..|.|||.+...          . .+++.||||+||+++||+
T Consensus       179 -------------df~f------------FF-DTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf  232 (1431)
T KOG1240|consen  179 -------------DFTF------------FF-DTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELF  232 (1431)
T ss_pred             -------------cceE------------EE-ecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHH
Confidence                         0000            00 000122369999988541          2 467899999999999999


Q ss_pred             h-CCCCCCCC-----------ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          392 Y-GTTPFKGE-----------NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       392 t-G~~Pf~~~-----------~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      + |++||.-.           +.+..+.+|..                   ..++.||..|++.||.+|.+++    +.|
T Consensus       233 ~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ied-------------------~~~Rnlil~Mi~rdPs~RlSAe----dyL  289 (1431)
T KOG1240|consen  233 LEGRPLFTLSQLLAYRSGNADDPEQLLEKIED-------------------VSLRNLILSMIQRDPSKRLSAE----DYL  289 (1431)
T ss_pred             hcCCCcccHHHHHhHhccCccCHHHHHHhCcC-------------------ccHHHHHHHHHccCchhccCHH----HHH
Confidence            7 78888521           11111211111                   1389999999999999999997    666


Q ss_pred             cC
Q 010140          460 RH  461 (517)
Q Consensus       460 ~h  461 (517)
                      +-
T Consensus       290 ~~  291 (1431)
T KOG1240|consen  290 QK  291 (1431)
T ss_pred             Hh
Confidence            54

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.89  E-value=2.7e-23  Score=190.57  Aligned_cols=142  Identities=21%  Similarity=0.195  Sum_probs=102.2

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH-----------------------HHhHHHHHHHHHHh
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-----------------------KLHRADMEKVILTM  145 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~-----------------------~~~~~~~E~~il~~  145 (517)
                      ...||+|+||.||+|.+.      +++.||||+++........                       .......|+.+|.+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~------~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   75 (190)
T cd05147           2 NGCISTGKEANVYHATTA------NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKR   75 (190)
T ss_pred             CCccccccceEEEEEECC------CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            467999999999999875      4688999999754221100                       01223459999999


Q ss_pred             cCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHH
Q 010140          146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYA  225 (517)
Q Consensus       146 l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (517)
                      +.+++|........ . ..+|||||++|++|...+...  ..++..                            .+..++
T Consensus        76 l~~~~v~~p~~~~~-~-~~~iVmE~i~g~~l~~~~~~~--~~~~~~----------------------------~~~~i~  123 (190)
T cd05147          76 LVTAGIPCPEPILL-K-SHVLVMEFIGDDGWAAPRLKD--APLSES----------------------------KARELY  123 (190)
T ss_pred             HHHCCCCCCcEEEe-c-CCEEEEEEeCCCCCcchhhhc--CCCCHH----------------------------HHHHHH
Confidence            98888754333222 2 238999999887775443221  222222                            224678


Q ss_pred             HHHHHHHHHH-HhcCceeccCCCCceEEccCCcEEeccCCCcccc
Q 010140          226 AETLLALEYL-HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       226 ~qi~~aL~yL-H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~  269 (517)
                      .||+.+|.|| |+.||+||||||+|||++ ++.++|+|||+|...
T Consensus       124 ~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         124 LQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            9999999999 799999999999999998 578999999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=8.3e-24  Score=210.21  Aligned_cols=154  Identities=31%  Similarity=0.463  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCC
Q 010140          221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPM  300 (517)
Q Consensus       221 ~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (517)
                      +..++.|++.|++|   +|.+|||+||.||++..+..+||.|||+.......+.                          
T Consensus       361 ~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~--------------------------  411 (516)
T KOG1033|consen  361 MLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDET--------------------------  411 (516)
T ss_pred             HHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheeecccCCc--------------------------
Confidence            45788999999999   9999999999999999999999999999744332110                          


Q ss_pred             CCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchH
Q 010140          301 QPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDW  380 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~Di  380 (517)
                                                                    ..+.....+.-+||..||+||.+.+..|+.++||
T Consensus       412 ----------------------------------------------~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdI  445 (516)
T KOG1033|consen  412 ----------------------------------------------VAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDI  445 (516)
T ss_pred             ----------------------------------------------ccchhhhhhhcccccccCCHHHHhhhhhhhhcch
Confidence                                                          0011123445589999999999999999999999


Q ss_pred             HHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          381 WTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       381 WSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      ||||+||+||+. -...|...   ..+..+..+.++ |......       ++-.+|+.+||...|.+||++.    +.-
T Consensus       446 yaLGlil~EL~~~f~T~~er~---~t~~d~r~g~ip-~~~~~d~-------p~e~~ll~~lls~~p~~RP~~~----~~~  510 (516)
T KOG1033|consen  446 YALGLILAELLIQFSTQFERI---ATLTDIRDGIIP-PEFLQDY-------PEEYTLLQQLLSPSPEERPSAI----EVA  510 (516)
T ss_pred             hhHHHHHHHHHHHhccHHHHH---HhhhhhhcCCCC-hHHhhcC-------cHHHHHHHHhcCCCcccCchHH----HHh
Confidence            999999999997 44444322   223333333222 1111111       2346999999999999999765    655


Q ss_pred             cCCCc
Q 010140          460 RHEFF  464 (517)
Q Consensus       460 ~hp~f  464 (517)
                      -|+|.
T Consensus       511 ~~~~~  515 (516)
T KOG1033|consen  511 LHEFL  515 (516)
T ss_pred             hhhhc
Confidence            66654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.87  E-value=5e-22  Score=182.72  Aligned_cols=144  Identities=20%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-----------------------HHHHHhHHHHHHHHHHh
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-----------------------IRKKLHRADMEKVILTM  145 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-----------------------~~~~~~~~~~E~~il~~  145 (517)
                      .+.||+|+||.||+|++.      +++.||||+++.....                       ..........|...+.+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~------~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   75 (190)
T cd05145           2 NGCISTGKEANVYHARTG------DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKR   75 (190)
T ss_pred             CceeecCCCcEEEEEEcC------CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            568999999999999865      3688999998754210                       00012234578999999


Q ss_pred             cCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHH
Q 010140          146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYA  225 (517)
Q Consensus       146 l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (517)
                      +.|++|.....+....  .||||||++|+++.......  ..+...                            ..+.++
T Consensus        76 l~~~~i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~--~~~~~~----------------------------~~~~i~  123 (190)
T cd05145          76 LYEAGVPVPEPILLKK--NVLVMEFIGDDGSPAPRLKD--VPLEEE----------------------------EAEELY  123 (190)
T ss_pred             HHhCCCCCceEEEecC--CEEEEEEecCCCchhhhhhh--ccCCHH----------------------------HHHHHH
Confidence            9999885544443332  48999999887654322111  112111                            224678


Q ss_pred             HHHHHHHHHHHh-cCceeccCCCCceEEccCCcEEeccCCCcccccc
Q 010140          226 AETLLALEYLHM-MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDV  271 (517)
Q Consensus       226 ~qi~~aL~yLH~-~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~  271 (517)
                      .|++.+|.+||+ +||+||||||+|||++ ++.++|+|||++.....
T Consensus       124 ~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         124 EQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            999999999999 9999999999999998 89999999999976553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.86  E-value=1.8e-22  Score=213.83  Aligned_cols=314  Identities=29%  Similarity=0.436  Sum_probs=229.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+++.+++-+-+|.+|.++.++-..     ++...++|+.........+..+....+-.++...+||.++.....|..
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~-----sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~  875 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAG-----SGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPC  875 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccc-----cccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCC
Confidence            456788999999999999999987665     445567777655443333344444445556655677888887777788


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....+|||+|+.|++|...++..+...  ...+                            |.++..++.+++|||+..+
T Consensus       876 rsP~~L~~~~~~~~~~~Skl~~~~~~s--aepa----------------------------Rs~i~~~vqs~e~L~s~~r  925 (1205)
T KOG0606|consen  876 RSPLPLVGHYLNGGDLPSKLHNSGCLS--AEPA----------------------------RSPILERVQSLESLHSSLR  925 (1205)
T ss_pred             CCCcchhhHHhccCCchhhhhcCCCcc--cccc----------------------------cchhHHHHhhhhccccchh
Confidence            889999999999999998877654211  1111                            3456788999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +|||++|.|+|+..+|+.+++|||+.......+.....             +        ++..             ...
T Consensus       926 ~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~-------------s--------g~~~-------------~~~  971 (1205)
T KOG0606|consen  926 KHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDL-------------S--------GPSS-------------SGT  971 (1205)
T ss_pred             hcccccccchhhcccCCcccCccccccccccccCcCCc-------------c--------cccc-------------cCc
Confidence            99999999999999999999999965443322111100             0        0000             000


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                      +.......+.+.            . ............||+.|.+||.+.+...+..+|+|++|++++|.++|.+||...
T Consensus       972 ~~~~~~~~~~~~------------l-~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  972 PRRLSRSERRPQ------------L-SADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             cccccccccccc------------c-ccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence            000000000000            0 000112345678999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEV  480 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~  480 (517)
                      .....+..|......+|........      .+++++.++|..+|.+|.++ .+..++..|+||++++|+.+....-+++
T Consensus      1039 tpq~~f~ni~~~~~~~p~g~~~~s~------~aq~~~~~ll~~~~~qr~~a-~~~~e~k~~~~~~~~~~~~l~~q~~~~~ 1111 (1205)
T KOG0606|consen 1039 TPQQIFENILNRDIPWPEGPEEGSY------EAQDLINRLLTEEPTQRLGA-KGAAEVKGHPFFQDVDWENLALQKAEFV 1111 (1205)
T ss_pred             chhhhhhccccCCCCCCCCccccCh------hhhhhhhhhhccCchhccCc-ccccccccCCccCCCCccccccccCccC
Confidence            9999999999988888766554444      48999999999999999998 4556899999999999999988776666


Q ss_pred             CCC
Q 010140          481 PNN  483 (517)
Q Consensus       481 ~~~  483 (517)
                      |..
T Consensus      1112 p~~ 1114 (1205)
T KOG0606|consen 1112 PQP 1114 (1205)
T ss_pred             CCC
Confidence            543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=9.5e-22  Score=179.20  Aligned_cols=242  Identities=18%  Similarity=0.286  Sum_probs=182.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++..++.+|.+...|+.|+|++.+       ..++.|++...... ....+.|..|.-.|+-+.||||+.+++.+..
T Consensus       187 id~~~lnl~tkl~e~hsgelwrgrwqg-------ndivakil~vr~~t-~risrdfneefp~lrifshpnilpvlgacns  258 (448)
T KOG0195|consen  187 IDVSSLNLITKLAESHSGELWRGRWQG-------NDIVAKILNVREVT-ARISRDFNEEFPALRIFSHPNILPVLGACNS  258 (448)
T ss_pred             cchhhhhhhhhhccCCCcccccccccC-------cchhhhhhhhhhcc-hhhcchhhhhCcceeeecCCchhhhhhhccC
Confidence            345566788899999999999999986       33567777655433 2345667778888999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC-
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG-  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~-  239 (517)
                      ..++.++..|++.|+|+..+.....--..-+++                            ..++.+|++|++|||+.. 
T Consensus       259 ppnlv~isq~mp~gslynvlhe~t~vvvd~sqa----------------------------v~faldiargmaflhslep  310 (448)
T KOG0195|consen  259 PPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQA----------------------------VRFALDIARGMAFLHSLEP  310 (448)
T ss_pred             CCCceEeeeeccchHHHHHHhcCccEEEecchH----------------------------HHHHHHHHhhHHHHhhcch
Confidence            999999999999999999987653222222222                            267889999999999974 


Q ss_pred             -ceeccCCCCceEEccCCcEEe--ccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          240 -IVYRDLKPENVLVREDGHIML--SDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       240 -iiHrDLKp~NILl~~~~~vkL--~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                       |.---|....++|+++.+.+|  +|--++..                                                
T Consensus       311 ~ipr~~lns~hvmidedltarismad~kfsfq------------------------------------------------  342 (448)
T KOG0195|consen  311 MIPRFYLNSKHVMIDEDLTARISMADTKFSFQ------------------------------------------------  342 (448)
T ss_pred             hhhhhhcccceEEecchhhhheecccceeeee------------------------------------------------
Confidence             444468888999998876655  34332211                                                


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC---CccchHHHHHHHHHHHhhC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH---GSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~---~~~~DiWSlGvil~elltG  393 (517)
                                                           .....-.|.||+||.+...+-   -.++|+|||++++|||.|.
T Consensus       343 -------------------------------------e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~tr  385 (448)
T KOG0195|consen  343 -------------------------------------EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTR  385 (448)
T ss_pred             -------------------------------------ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcc
Confidence                                                 011234788999999988764   3589999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCC--CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          394 TTPFKGENNEKTLINILKKPL--TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~--~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.||....+.+.-.+|.-..+  ..|+...         ..+..|+.-|++.||.+||.+.
T Consensus       386 evpfadlspmecgmkialeglrv~ippgis---------~hm~klm~icmnedpgkrpkfd  437 (448)
T KOG0195|consen  386 EVPFADLSPMECGMKIALEGLRVHIPPGIS---------RHMNKLMNICMNEDPGKRPKFD  437 (448)
T ss_pred             ccccccCCchhhhhhhhhccccccCCCCcc---------HHHHHHHHHHhcCCCCcCCCcc
Confidence            999999998887777654332  2332221         2488999999999999999986

>PRK10345 hypothetical protein; Provisional

Probab=99.85  E-value=4.6e-21  Score=177.38  Aligned_cols=136  Identities=21%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-----CCCCccceeeeeecCc
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-----DHPFLPTLYAEFEASH  162 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-----~HpnIv~l~~~~~~~~  162 (517)
                      -.+.||+|+||.||.  +..     +.. .+||++.....   ...+.+.+|+.+++.+     +||||++++++++++.
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~-----~~~-k~IKv~~~~~~---~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~   74 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPE-----DAQ-RCIKIVYHRGD---GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDC   74 (210)
T ss_pred             CcceecCCCceEEEE--CCC-----CcC-eEEEEEecccc---chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCC
Confidence            356899999999995  333     222 37998865422   1234577799999999     5799999999998763


Q ss_pred             ---eeE-EEEEe--cCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH-HHH
Q 010140          163 ---YSC-LVMEY--CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL-EYL  235 (517)
Q Consensus       163 ---~~~-lV~E~--~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL-~yL  235 (517)
                         .++ +||||  +.+|+|.+++...   .+.+.  .                            .++.|++.++ +||
T Consensus        75 g~g~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~----------------------------~~~~~~L~~l~~yL  121 (210)
T PRK10345         75 GTGYVYDVIADFDGKPSITLTEFAEQC---RYEED--V----------------------------AQLRQLLKKLKRYL  121 (210)
T ss_pred             CCeEEEEEEecCCCCcchhHHHHHHcc---cccHh--H----------------------------HHHHHHHHHHHHHH
Confidence               434 78999  5579999999653   22222  1                            3357888888 999


Q ss_pred             HhcCceeccCCCCceEEcc----CCcEEeccCCCcc
Q 010140          236 HMMGIVYRDLKPENVLVRE----DGHIMLSDFDLSF  267 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~----~~~vkL~DFGls~  267 (517)
                      |+++||||||||+|||++.    ++.++|+||+.+.
T Consensus       122 h~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345        122 LDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             HHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            9999999999999999974    3379999955543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.1e-21  Score=206.30  Aligned_cols=197  Identities=26%  Similarity=0.376  Sum_probs=147.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC---CCCccceeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD---HPFLPTLYAE  157 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~  157 (517)
                      +..+.|.|.+.||+|+||.||+|...+      ++.||+|+-+......      +..-.+++.+|+   -+.|..+...
T Consensus       695 ~~~~~~~I~~e~G~g~y~~vy~a~~~~------~~~~alK~e~P~~~WE------fYI~~q~~~RLk~~~~~~~~~~~~a  762 (974)
T KOG1166|consen  695 VGGEKFCISKEIGEGSYGSVYVATHSN------GKLVALKVEKPPNPWE------FYICLQVMERLKPQMLPSIMHISSA  762 (974)
T ss_pred             ecceeEEEEeeeccccceEEEEeecCC------CcEEEEEeecCCCcee------eeehHHHHHhhchhhhcchHHHHHH
Confidence            456789999999999999999998874      6899999976542210      000122333443   2345566666


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.-.+..+||+||.+.|+|.+++...  +...+..+                            .+++.||+.-|+.||.
T Consensus       763 ~~~~~~S~lv~ey~~~Gtlld~~N~~--~~m~e~lv----------------------------~~~~~qml~ive~lH~  812 (974)
T KOG1166|consen  763 HVFQNASVLVSEYSPYGTLLDLINTN--KVMDEYLV----------------------------MFFSCQMLRIVEHLHA  812 (974)
T ss_pred             HccCCcceeeeeccccccHHHhhccC--CCCCchhh----------------------------hHHHHHHHHHHHHHHh
Confidence            66677789999999999999998732  22222222                            2567899999999999


Q ss_pred             cCceeccCCCCceEEcc-------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          238 MGIVYRDLKPENVLVRE-------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~-------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      .+|||+||||+|+||..       ..-++|+|||.|-.+..-++                                    
T Consensus       813 ~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~------------------------------------  856 (974)
T KOG1166|consen  813 MGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPD------------------------------------  856 (974)
T ss_pred             cceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCC------------------------------------
Confidence            99999999999999952       33699999998843322111                                    


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~el  390 (517)
                                                              ..+....++|-.+-++|+..|.++++.+|.|.|+.+++.|
T Consensus       857 ----------------------------------------~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~m  896 (974)
T KOG1166|consen  857 ----------------------------------------GTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVM  896 (974)
T ss_pred             ----------------------------------------CcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHH
Confidence                                                    1223455788899999999999999999999999999999


Q ss_pred             hhCCC
Q 010140          391 LYGTT  395 (517)
Q Consensus       391 ltG~~  395 (517)
                      |.|++
T Consensus       897 LFG~y  901 (974)
T KOG1166|consen  897 LFGKY  901 (974)
T ss_pred             HHHHH
Confidence            99865

>smart00090 RIO RIO-like kinase

Probab=99.81  E-value=8.3e-20  Score=173.14  Aligned_cols=146  Identities=24%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             CceEEeeeeccceeEEEEEE-EecCCCCCCCceeeeeecchHHHH---------------------HHHHHhHHHHHHHH
Q 010140           85 HFRLLRRLGSGDIGNVYLCQ-IRNPMVGLPQCFYAMKVVDREALA---------------------IRKKLHRADMEKVI  142 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~-~~~~~~~~~~~~vAiK~i~~~~~~---------------------~~~~~~~~~~E~~i  142 (517)
                      .|.+.+.||+|+||.||+|. +..     +++.||||++......                     .......+..|+.+
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~-----~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~  103 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDG-----SGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRN  103 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCC-----CCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHH
Confidence            48899999999999999998 333     5788999998753210                     00012345679999


Q ss_pred             HHhcCCCC--ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhh
Q 010140          143 LTMLDHPF--LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFN  220 (517)
Q Consensus       143 l~~l~Hpn--Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  220 (517)
                      +.++.+.+  +.++++.   . ..||||||++|++|.......  ....                            ...
T Consensus       104 L~~L~~~~i~~p~~~~~---~-~~~lV~E~~~g~~L~~~~~~~--~~~~----------------------------~~~  149 (237)
T smart00090      104 LQRLYEAGVPVPKPIAW---R-RNVLVMEFIGGDGLPAPRLKD--VEPE----------------------------EEE  149 (237)
T ss_pred             HHHHHhcCCCCCeeeEe---c-CceEEEEEecCCccccccccc--CCcc----------------------------hHH
Confidence            99997533  3444432   2 358999999888876543211  1111                            111


Q ss_pred             hhHHHHHHHHHHHHHHhcC-ceeccCCCCceEEccCCcEEeccCCCccccc
Q 010140          221 YRFYAAETLLALEYLHMMG-IVYRDLKPENVLVREDGHIMLSDFDLSFKCD  270 (517)
Q Consensus       221 ~~~~~~qi~~aL~yLH~~~-iiHrDLKp~NILl~~~~~vkL~DFGls~~~~  270 (517)
                      .+.++.||+.+|.+||++| |+||||||+||+++ ++.++|+|||.+....
T Consensus       150 ~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      150 EFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            2467899999999999999 99999999999999 8899999999986544

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=2e-21  Score=206.25  Aligned_cols=266  Identities=25%  Similarity=0.381  Sum_probs=194.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  162 (517)
                      ..|.+.+.||+|+|+.|-++.....    ....+|+|.+.... .......+...|..+-+.+. |+|++++++...+.+
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~----~~~~~a~~~~s~~~-~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~   94 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRD----PESSSATKPISIPP-KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPR   94 (601)
T ss_pred             ccccccccccccccchhhhhhhcCC----CcceeeccCCCCCC-CccchhhhcCccccccccccccccccccCCccCCCc
Confidence            4588888899999999998876542    45667777775442 11233445555788888886 999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH-hcCce
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIV  241 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH-~~~ii  241 (517)
                      ..++++||..|+++...+............+                            ..+..|+..+|.|+| ..++.
T Consensus        95 ~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~----------------------------~~~~~ql~s~l~~~H~~~~~~  146 (601)
T KOG0590|consen   95 SYLLSLSYSDGGSLFSKISHPDSTGTSSSSA----------------------------SRYLPQLNSGLSYLHPENGVT  146 (601)
T ss_pred             ccccccCcccccccccccccCCccCCCCcch----------------------------hhhhhhhccCccccCcccccc
Confidence            9999999999999987663211112222222                            267799999999999 99999


Q ss_pred             eccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||+|.+++..+ .++++|||+|..+...                                                
T Consensus       147 h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~------------------------------------------------  178 (601)
T KOG0590|consen  147 HRDIKPSNSLLDESGSALKIADFGLATAYRNK------------------------------------------------  178 (601)
T ss_pred             cCCCCCccchhccCCCcccCCCchhhcccccc------------------------------------------------
Confidence            999999999999999 9999999998443210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCC-CCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVG-THEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-t~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                 ..........+| ++.|+|||...+.. .+...|+||+|+++..+++|..|+.
T Consensus       179 ---------------------------~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~  231 (601)
T KOG0590|consen  179 ---------------------------NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWD  231 (601)
T ss_pred             ---------------------------CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcc
Confidence                                       000112233467 99999999999854 5889999999999999999999998


Q ss_pred             CCChHHHH-HHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENNEKTL-INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~~~~~-~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ........ .........+-...+.     .......+++.++|..+|.+|.+..    ++..+||+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~k~l~~~~~~r~s~~----~~~~d~~~~~  291 (601)
T KOG0590|consen  232 FPSRKDGRYSSWKSNKGRFTQLPWN-----SISDQAHDLLHKILKENPSNRLSIE----ELKLDNWLSS  291 (601)
T ss_pred             ccccccccceeecccccccccCccc-----cCChhhhhcccccccCCchhccccc----cccccccccc
Confidence            65443321 1122211110011111     1112478999999999999999998    9999999988

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.80  E-value=5.8e-19  Score=165.31  Aligned_cols=137  Identities=22%  Similarity=0.200  Sum_probs=109.9

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchH-----HHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-----ALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~-----~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      +.||+|++|.||+|...+       ..+++|+....     .........++.+|+.++..+.|++|+....++.+....
T Consensus         2 ~~l~~G~~~~vy~~~~~~-------~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~   74 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLG-------IKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENF   74 (211)
T ss_pred             cccccCceEEEEEEeeCC-------CceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCC
Confidence            579999999999998743       56888875432     122223345677899999999999998877777777888


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++||||++|++|.+++.....                                  ....++.+++.+|.+||+.|++|||
T Consensus        75 ~lv~e~~~G~~L~~~~~~~~~----------------------------------~~~~i~~~i~~~l~~lH~~~i~H~D  120 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINSNGM----------------------------------EELELSREIGRLVGKLHSAGIIHGD  120 (211)
T ss_pred             EEEEEEeCCcCHHHHHHhccH----------------------------------HHHHHHHHHHHHHHHHHhCCcccCC
Confidence            999999999999988754311                                  1125778999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      ++|+|||++ ++.++|+|||++..
T Consensus       121 l~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        121 LTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCcccEEEE-CCCEEEEECCcccC
Confidence            999999999 78999999999853

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.80  E-value=9.3e-19  Score=162.37  Aligned_cols=132  Identities=24%  Similarity=0.222  Sum_probs=104.1

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchH-----HHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-----ALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~-----~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      .||+|+||.||+|...       +..+++|+....     .........++.+|+.++..+.|+++....-++......+
T Consensus         1 ~ig~G~~~~vy~~~~~-------~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~   73 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFL-------GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKT   73 (199)
T ss_pred             CCCCCceEEEEEeecC-------CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCE
Confidence            4899999999999843       366888885432     1122233466778999999999887665555555666789


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      +||||++|++|.+++.....                                     .++.|++.+|.+||+.|++|||+
T Consensus        74 lv~e~~~g~~l~~~~~~~~~-------------------------------------~~~~~i~~~l~~lH~~gi~H~Dl  116 (199)
T TIGR03724        74 IVMEYIEGKPLKDVIEEGND-------------------------------------ELLREIGRLVGKLHKAGIVHGDL  116 (199)
T ss_pred             EEEEEECCccHHHHHhhcHH-------------------------------------HHHHHHHHHHHHHHHCCeecCCC
Confidence            99999999999887654210                                     34689999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcc
Q 010140          246 KPENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~  267 (517)
                      +|+||+++ ++.++++|||++.
T Consensus       117 ~~~Nil~~-~~~~~liDfg~a~  137 (199)
T TIGR03724       117 TTSNIIVR-DDKLYLIDFGLGK  137 (199)
T ss_pred             CcceEEEE-CCcEEEEECCCCc
Confidence            99999999 8899999999873

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.79  E-value=6.2e-19  Score=187.72  Aligned_cols=139  Identities=22%  Similarity=0.187  Sum_probs=109.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeec-----chHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-----DREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i-----~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..|...+.||+|+||+||+|.....       .+++|+.     ............++.+|+.+++.++|++|+..+.++
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~-------~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~  405 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGR-------DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYD  405 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCc-------cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEE
Confidence            4457789999999999999987642       2233321     111122223346677899999999999999887777


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ......++||||++|++|.+++...                                      ..++.|++.+|.|||++
T Consensus       406 ~~~~~~~lv~E~~~g~~L~~~l~~~--------------------------------------~~~~~~i~~~L~~lH~~  447 (535)
T PRK09605        406 VDPEEKTIVMEYIGGKDLKDVLEGN--------------------------------------PELVRKVGEIVAKLHKA  447 (535)
T ss_pred             EeCCCCEEEEEecCCCcHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHhC
Confidence            7777889999999999998876421                                      25678999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      ||+||||||+|||+ .++.++|+|||+++.
T Consensus       448 giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        448 GIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            99999999999999 678999999999854

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.78  E-value=8.3e-19  Score=162.55  Aligned_cols=139  Identities=24%  Similarity=0.212  Sum_probs=105.2

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-------------------HHHHhHHHHHHHHHHhc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-------------------RKKLHRADMEKVILTML  146 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-------------------~~~~~~~~~E~~il~~l  146 (517)
                      |.+.+.||+|+||.||+|...      +++.||||++.......                   .........|..++..+
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   90 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP------DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKAL   90 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC------CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHH
Confidence            888899999999999999764      46789999865432000                   01112356688999999


Q ss_pred             CCCC--ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHH
Q 010140          147 DHPF--LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY  224 (517)
Q Consensus       147 ~Hpn--Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (517)
                      .|++  ++..++    ....++||||++|++|......        ..                            ...+
T Consensus        91 ~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~----------------------------~~~~  130 (198)
T cd05144          91 YEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL--------ED----------------------------PEEV  130 (198)
T ss_pred             HHcCCCCCceee----cCCceEEEEEeCCcchhhcccc--------cc----------------------------HHHH
Confidence            8874  444443    2345899999999998654220        01                            1256


Q ss_pred             HHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCccccc
Q 010140          225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD  270 (517)
Q Consensus       225 ~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~  270 (517)
                      +.+++.++.++|+.||+||||||+||+++.++.++|+|||++..+.
T Consensus       131 ~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         131 LDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             HHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            7899999999999999999999999999999999999999986554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.75  E-value=7.6e-18  Score=171.11  Aligned_cols=203  Identities=22%  Similarity=0.314  Sum_probs=145.0

Q ss_pred             HHhcCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhh
Q 010140          143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYR  222 (517)
Q Consensus       143 l~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (517)
                      |+.+.|.|+.++++.+.++...+.|.+||..|+|.+.+....   +....    +|.                      -
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~---~~~d~----~F~----------------------~   51 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED---IKLDY----FFI----------------------L   51 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc---cCccH----HHH----------------------H
Confidence            456889999999999999999999999999999999887621   11111    111                      1


Q ss_pred             HHHHHHHHHHHHHHhcCc-eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          223 FYAAETLLALEYLHMMGI-VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       223 ~~~~qi~~aL~yLH~~~i-iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      .++++|+.||.|||...| .|+.|+..|++++..+.+||+|||+.........                           
T Consensus        52 s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~---------------------------  104 (484)
T KOG1023|consen   52 SFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAE---------------------------  104 (484)
T ss_pred             HHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhccccccccc---------------------------
Confidence            467999999999999876 9999999999999999999999999633211000                           


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-------C
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-------H  374 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-------~  374 (517)
                                                                       ........-...|.|||.+.+..       .
T Consensus       105 -------------------------------------------------~~~~~~~~~~~lw~aPellr~~~~~~~~~~~  135 (484)
T KOG1023|consen  105 -------------------------------------------------PEAHHPIRKALLWTAPELLRGALSQSLESAL  135 (484)
T ss_pred             -------------------------------------------------ccccchhHHHHhccCHHHhcccccccccccc
Confidence                                                             00000011234699999998742       3


Q ss_pred             CccchHHHHHHHHHHHhhCCCCCCCC----ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccC
Q 010140          375 GSAVDWWTLGVFLYEMLYGTTPFKGE----NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG  450 (517)
Q Consensus       375 ~~~~DiWSlGvil~elltG~~Pf~~~----~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t  450 (517)
                      +.+.||||+|++++|+++...||...    +..+....+.++.............  +...++..++..||..+|.+||+
T Consensus       136 ~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~--e~~~~l~~l~~~cw~e~P~~rPs  213 (484)
T KOG1023|consen  136 TQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLN--ELPPELLLLVARCWEEIPEKRPS  213 (484)
T ss_pred             cccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhh--hcchHHHHHHHHhcccChhhCcc
Confidence            66799999999999999999999863    2234555555522211111111111  23336899999999999999999


Q ss_pred             CC
Q 010140          451 SL  452 (517)
Q Consensus       451 ~~  452 (517)
                      +.
T Consensus       214 ~~  215 (484)
T KOG1023|consen  214 IE  215 (484)
T ss_pred             HH
Confidence            96

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.72  E-value=1.8e-17  Score=152.03  Aligned_cols=140  Identities=23%  Similarity=0.225  Sum_probs=96.3

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHh---------------------HHHHHHHHHHhcC
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH---------------------RADMEKVILTMLD  147 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~---------------------~~~~E~~il~~l~  147 (517)
                      .+.||+|+||+||+|.+.      +++.||||++............                     ....|...+..+.
T Consensus         2 ~~~lg~G~~g~Vy~a~~~------~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~   75 (187)
T cd05119           2 GGPIGTGKEADVYLALDG------DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLY   75 (187)
T ss_pred             CcccccccceeEEEEECC------CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHH
Confidence            467999999999999865      3578999998753221111111                     1134666666664


Q ss_pred             CC--CccceeeeeecCceeEEEEEecCCCchhHH-HHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHH
Q 010140          148 HP--FLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY  224 (517)
Q Consensus       148 Hp--nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (517)
                      +.  .+.+.+++    ...++||||++|+++... +....     ..                           ...+.+
T Consensus        76 ~~~~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~-----~~---------------------------~~~~~~  119 (187)
T cd05119          76 EAGVPVPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR-----LL---------------------------EDPEEL  119 (187)
T ss_pred             HcCCCCCceEec----CCCEEEEEEeCCCCccChhhhhhh-----hc---------------------------ccHHHH
Confidence            43  34555543    235899999998654211 11100     00                           122467


Q ss_pred             HHHHHHHHHHHHh-cCceeccCCCCceEEccCCcEEeccCCCcccccc
Q 010140          225 AAETLLALEYLHM-MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDV  271 (517)
Q Consensus       225 ~~qi~~aL~yLH~-~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~  271 (517)
                      +.+++.++.++|. +||+||||||+||+++ ++.++|+|||.+.....
T Consensus       120 ~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         120 YDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             HHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEEECcccccccC
Confidence            8999999999999 9999999999999999 89999999999965543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.71  E-value=7.5e-17  Score=153.27  Aligned_cols=136  Identities=23%  Similarity=0.209  Sum_probs=99.7

Q ss_pred             eee-ccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH----------HHHHhHHHHHHHHHHhcCCCCc--cceeee
Q 010140           91 RLG-SGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI----------RKKLHRADMEKVILTMLDHPFL--PTLYAE  157 (517)
Q Consensus        91 ~LG-~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~----------~~~~~~~~~E~~il~~l~HpnI--v~l~~~  157 (517)
                      .|| .|+.|+||.+...       +..++||.+.......          .....++.+|+.++..|.|++|  ++.+++
T Consensus        38 ~lg~~~g~gtv~~v~~~-------~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~  110 (239)
T PRK01723         38 VVGSAKGRGTTWFVQTP-------GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAA  110 (239)
T ss_pred             eeecCCCCccEEEEEeC-------CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEee
Confidence            466 7777888887654       3568888775432110          1223567789999999998875  677776


Q ss_pred             eecC-ce---eEEEEEecCC-CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          158 FEAS-HY---SCLVMEYCPG-GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       158 ~~~~-~~---~~lV~E~~~g-g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      .... ..   .++|||+++| .+|.+++...   .+..                                ..+.||+.+|
T Consensus       111 ~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~--------------------------------~~~~~i~~~l  155 (239)
T PRK01723        111 RVVRHGLFYRADILIERIEGARDLVALLQEA---PLSE--------------------------------EQWQAIGQLI  155 (239)
T ss_pred             eeeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCH--------------------------------HHHHHHHHHH
Confidence            4332 22   3599999997 6888876542   1111                                2246899999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      .+||++||+||||||+|||++.++.++|+|||.+..
T Consensus       156 ~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        156 ARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            999999999999999999999999999999999854

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.65  E-value=3.8e-16  Score=137.35  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=107.2

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC--CCccceeeeeecCceeE
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH--PFLPTLYAEFEASHYSC  165 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~~~~~  165 (517)
                      +.+.||+|.++.||++...+       ..+++|+......     ...+..|+.++..+.|  .++++++.++...+..|
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-------~~~~iK~~~~~~~-----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~   69 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-------EDYVLKINPSREK-----GADREREVAILQLLARKGLPVPKVLASGESDGWSY   69 (155)
T ss_pred             cceecccccccceEEEEecC-------CeEEEEecCCCCc-----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccE
Confidence            46789999999999998753       5689999876532     3456669999999976  58999999998888999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc---Ccee
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM---GIVY  242 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~---~iiH  242 (517)
                      ++|||++|+.+..+         ...                            ....++.+++.+|++||..   +++|
T Consensus        70 ~v~e~~~g~~~~~~---------~~~----------------------------~~~~~~~~~~~~l~~lh~~~~~~i~H  112 (155)
T cd05120          70 LLMEWIEGETLDEV---------SEE----------------------------EKEDIAEQLAELLAKLHQLPLLVLCH  112 (155)
T ss_pred             EEEEecCCeecccC---------CHH----------------------------HHHHHHHHHHHHHHHHhCCCceEEEe
Confidence            99999988877542         000                            0124678999999999985   7999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      +||+|+|||++..+.++++|||.+..
T Consensus       113 ~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120         113 GDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             cCCCcceEEEECCcEEEEEecccccC
Confidence            99999999999989999999999853

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.5e-15  Score=151.86  Aligned_cols=260  Identities=22%  Similarity=0.196  Sum_probs=177.5

Q ss_pred             CCceEEeeeec--cceeEEEEEEE--ecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           84 DHFRLLRRLGS--GDIGNVYLCQI--RNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        84 ~~y~i~~~LG~--G~fG~Vy~~~~--~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      ..|.+...+|.  |.+|.||.+++  ..     ....+|+|.-+..... ...-.+-.+|..-...+ .|+|.++.+..+
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~-----s~~~~a~k~s~~p~s~-p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~  187 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSE-----SPHKFAVKKSKIPFSP-PLDSKRKLREFLSHHKIDSHENPVRDSPAW  187 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCccc-----CCcccccccccCCCCC-ccccccccchhhcccccCccccccccCccc
Confidence            45778899999  99999999988  44     5677888873321110 01111222355555555 599999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH----HHHH
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL----ALEY  234 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~----aL~y  234 (517)
                      +..+.+|+-+|+| |.+|..+..... .-++....                            ..+..+...    ||..
T Consensus       188 e~~~~lfiqtE~~-~~sl~~~~~~~~-~~~p~~~l----------------------------~~~~~~~~~~~~~al~~  237 (524)
T KOG0601|consen  188 EGSGILFIQTELC-GESLQSYCHTPC-NFLPDNLL----------------------------WNSLRDWLSRDVTALSH  237 (524)
T ss_pred             ccCCcceeeeccc-cchhHHhhhccc-ccCCchhh----------------------------hhHHhhhhhcccccccc
Confidence            9999999999999 678877654421 11222222                            234456666    9999


Q ss_pred             HHhcCceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      +|+.+|+|-|+||+||++..+ ...+++|||+...+....-..                                     
T Consensus       238 ~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~-------------------------------------  280 (524)
T KOG0601|consen  238 LHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSS-------------------------------------  280 (524)
T ss_pred             cCCCcccccccchhheecccccceeecCCcceeEEccCCcccc-------------------------------------
Confidence            999999999999999999999 789999999985544211000                                     


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                          .........|...|++||.+.+. ++...||+++|.++.+..+|
T Consensus       281 ------------------------------------~~~~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~  323 (524)
T KOG0601|consen  281 ------------------------------------VFKVSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILG  323 (524)
T ss_pred             ------------------------------------ceeeeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhh
Confidence                                                00001112467789999999875 89999999999999999988


Q ss_pred             CCCCCCC--ChHHHHHHHhcCCCCCCCCCC-CCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          394 TTPFKGE--NNEKTLINILKKPLTFPRIGV-SSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       394 ~~Pf~~~--~~~~~~~~i~~~~~~~p~~~~-~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ..+....  +....+....     .|...+ ...      ..+...+..|++.+|-.|+++.    .+++|+++....
T Consensus       324 ~~~~~~g~~~~W~~~r~~~-----ip~e~~~~~s------~~l~~~~~~~~d~~~~~~~~~q----~~~~l~~i~s~~  386 (524)
T KOG0601|consen  324 SHLPSVGKNSSWSQLRQGY-----IPLEFCEGGS------SSLRSVTSQMLDEDPRLRLTAQ----ILTALNVIHSKL  386 (524)
T ss_pred             cccccCCCCCCcccccccc-----CchhhhcCcc------hhhhhHHHHhcCcchhhhhHHH----HHhccccccchh
Confidence            7665443  1111111111     111111 111      1356699999999999999997    899999987543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.51  E-value=8.1e-14  Score=143.86  Aligned_cols=142  Identities=19%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH-------------------------------HH------
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR-------------------------------KK------  132 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~-------------------------------~~------  132 (517)
                      +.||.|++|.||+|+.+      +++.||||+.+......-                               ..      
T Consensus       123 ~plasaSigQVh~A~l~------~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  196 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV------DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRR  196 (437)
T ss_pred             cceeeeehhheEEEEec------CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHH
Confidence            57999999999999986      467899999865321100                               00      


Q ss_pred             HhHHHHHHHHHHhc----C-CCCccceeeee-ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhc
Q 010140          133 LHRADMEKVILTML----D-HPFLPTLYAEF-EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYN  206 (517)
Q Consensus       133 ~~~~~~E~~il~~l----~-HpnIv~l~~~~-~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  206 (517)
                      .-.+.+|...+.++    . +++| .+-.++ ......+|||||++|++|.++...... ..  .               
T Consensus       197 Eldf~~Ea~n~~~~~~~~~~~~~v-~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~--~---------------  257 (437)
T TIGR01982       197 ELDLRREAANASELGENFKNDPGV-YVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GL--D---------------  257 (437)
T ss_pred             HHCHHHHHHHHHHHHHhcCCCCCE-EeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CC--C---------------
Confidence            00234455555554    2 3433 222222 223456899999999999876543210 00  0               


Q ss_pred             CCccccccchhhhhhhHHHHHHHH-HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCccccc
Q 010140          207 NLGFVHTDVTLFFNYRFYAAETLL-ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD  270 (517)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~qi~~-aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~  270 (517)
                                    ...++.+++. .+..+|..|++|+|+||.||+++.+|.++|+|||++..++
T Consensus       258 --------------~~~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       258 --------------RKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             --------------HHHHHHHHHHHHHHHHHhCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence                          0134556655 4788999999999999999999999999999999987655

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.47  E-value=6.6e-14  Score=146.15  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-------------------------------HHH
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-------------------------------RKK  132 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-------------------------------~~~  132 (517)
                      .+|.. +.||+|++|.||+|+.++     +++.||||++++.....                               .+.
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~-----~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~  193 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKD-----NGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEF  193 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECC-----CCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHH
Confidence            45776 789999999999999986     57889999997542110                               011


Q ss_pred             HhHHHHHHHH------HHhc----CCCCccceeeeee-cCceeEEEEEecCCCchhHHH--HhCCCCccCccchhhhhhh
Q 010140          133 LHRADMEKVI------LTML----DHPFLPTLYAEFE-ASHYSCLVMEYCPGGDLYAAR--QRQPGKRFGISSAKFVFFL  199 (517)
Q Consensus       133 ~~~~~~E~~i------l~~l----~HpnIv~l~~~~~-~~~~~~lV~E~~~gg~L~~~l--~~~~~~~~~~~~~~~~~~~  199 (517)
                      .+.+.+|+.+      +.++    .+.+.+.+-.++. -....+|||||++|+.|.++-  ...+......         
T Consensus       194 ~~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~l---------  264 (537)
T PRK04750        194 EKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLL---------  264 (537)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHH---------
Confidence            1222233333      3332    1333233323332 134457999999999997642  2111000000         


Q ss_pred             hhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCC----cEEeccCCCccccc
Q 010140          200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG----HIMLSDFDLSFKCD  270 (517)
Q Consensus       200 l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~----~vkL~DFGls~~~~  270 (517)
                                       ....+..++.|+       +..|++|+|+||.||+++.+|    .++++|||++..++
T Consensus       265 -----------------a~~~v~~~~~Qi-------f~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        265 -----------------AERGVEVFFTQV-------FRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             -----------------HHHHHHHHHHHH-------HhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence                             000112233443       468999999999999999888    99999999986654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.46  E-value=2.9e-13  Score=121.93  Aligned_cols=128  Identities=20%  Similarity=0.258  Sum_probs=94.9

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeeeecCceeEEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEFEASHYSCLV  167 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~~~lV  167 (517)
                      ++.|+.|.++.||+++..       ++.|++|+......    .......|+.+++.+.+.++ .+++....  ...++|
T Consensus         3 ~~~l~~G~~~~vy~~~~~-------~~~~~lK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv   69 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-------NKKYVVRIPGNGTE----LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLI   69 (170)
T ss_pred             eeecCCcccCceEEEEEC-------CeEEEEEeCCCCcc----cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEE
Confidence            467899999999999864       36799999865421    11234568999999865554 45555443  335799


Q ss_pred             EEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc-----ee
Q 010140          168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI-----VY  242 (517)
Q Consensus       168 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i-----iH  242 (517)
                      |||++|.++....         .. .                            +.++.+++.+|+.||+.++     +|
T Consensus        70 ~e~i~G~~l~~~~---------~~-~----------------------------~~~~~~l~~~l~~LH~~~~~~~~~~H  111 (170)
T cd05151          70 TEFIEGSELLTED---------FS-D----------------------------PENLEKIAKLLKKLHSSPLPDLVPCH  111 (170)
T ss_pred             EEecCCCcccccc---------cc-C----------------------------HHHHHHHHHHHHHHhCCCCCCceeec
Confidence            9999998875320         00 0                            1345799999999999985     99


Q ss_pred             ccCCCCceEEccCCcEEeccCCCccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      +|++|.||+++ ++.++++|||.+..
T Consensus       112 gD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151         112 NDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             CCCCcCcEEEE-CCeEEEEecccccC
Confidence            99999999998 67899999999853

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=1.5e-13  Score=129.31  Aligned_cols=211  Identities=19%  Similarity=0.234  Sum_probs=142.0

Q ss_pred             HHHhcCCCCccceeeeeecCc-----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccch
Q 010140          142 ILTMLDHPFLPTLYAEFEASH-----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVT  216 (517)
Q Consensus       142 il~~l~HpnIv~l~~~~~~~~-----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  216 (517)
                      -|-.+.|-|||+++.+|.+..     ...++.||+..|+|.++|++........                          
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~--------------------------  173 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKAL--------------------------  173 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhh--------------------------
Confidence            344567999999999997544     4789999999999999997743222111                          


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCC
Q 010140          217 LFFNYRFYAAETLLALEYLHMMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIP  294 (517)
Q Consensus       217 ~~~~~~~~~~qi~~aL~yLH~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (517)
                      ....+++|+.||+.||.|||+..  |+|+.+..+-|++..+|-+|++--.....-.                        
T Consensus       174 ~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~------------------------  229 (458)
T KOG1266|consen  174 FQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHP------------------------  229 (458)
T ss_pred             hHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCccccch------------------------
Confidence            12335689999999999999985  9999999999999999988875322110000                        


Q ss_pred             CCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC
Q 010140          295 SCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH  374 (517)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~  374 (517)
                      +                           +...                       .......-.|-++|.|||.=.....
T Consensus       230 s---------------------------~~~~-----------------------~~~Ek~~~~~~~g~~a~~sg~~tn~  259 (458)
T KOG1266|consen  230 S---------------------------VNST-----------------------REAEKSVNTSLPGFSAPESGTTTNT  259 (458)
T ss_pred             h---------------------------hhhh-----------------------hHhhhhccccCCccccCCcCccccc
Confidence            0                           0000                       0001111236778999998766667


Q ss_pred             CccchHHHHHHHHHHHhhCCCC-CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          375 GSAVDWWTLGVFLYEMLYGTTP-FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       375 ~~~~DiWSlGvil~elltG~~P-f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      +.++|||++|....+|..|..- -.+......-..+.....     +.....       -+++|.+||+-.|..||++. 
T Consensus       260 ~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~-----~len~l-------qr~~i~kcl~~eP~~rp~ar-  326 (458)
T KOG1266|consen  260 TGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVII-----GLENGL-------QRGSITKCLEGEPNGRPDAR-  326 (458)
T ss_pred             ccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhhee-----eccCcc-------ccCcCcccccCCCCCCcchh-
Confidence            8899999999999999987654 333322221111211110     001110       25889999999999999998 


Q ss_pred             ChHHhhcCCCcCCCC
Q 010140          454 GSVEIKRHEFFKGIN  468 (517)
Q Consensus       454 ~~~ell~hp~f~~~~  468 (517)
                         +++.||-.=.+.
T Consensus       327 ---~llfHpllfeVh  338 (458)
T KOG1266|consen  327 ---LLLFHPLLFEVH  338 (458)
T ss_pred             ---hhhcCceeeecc
Confidence               999999865543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=1e-13  Score=141.21  Aligned_cols=252  Identities=20%  Similarity=0.249  Sum_probs=173.9

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  159 (517)
                      ..+.+|..+..||.|.|+.|+.+..+.    ..+..|++|.+.+........+.. ..|+.+...+ .|.+++.++..|.
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~----~~~~~Y~~ke~~~~l~~~~~di~s-l~ev~l~~~l~~~~~~~g~~~~W~  336 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRP----EGDCIYAAKELLNGLATFASDIFS-LGEVILEAILGSHLPSVGKNSSWS  336 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecC----CCCceEeChhhhccccchHhhhcc-hhhhhHhhHhhcccccCCCCCCcc
Confidence            345789999999999999999988552    256889999887654433333222 2366666666 5999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      ...+.|+-.|||+++++...+...  ..+..                            ...+.+..|++.++.++|+..
T Consensus       337 ~~r~~~ip~e~~~~~s~~l~~~~~--~~~d~----------------------------~~~~~~~~q~~~~l~~i~s~~  386 (524)
T KOG0601|consen  337 QLRQGYIPLEFCEGGSSSLRSVTS--QMLDE----------------------------DPRLRLTAQILTALNVIHSKL  386 (524)
T ss_pred             ccccccCchhhhcCcchhhhhHHH--HhcCc----------------------------chhhhhHHHHHhccccccchh
Confidence            888999999999999886544111  11111                            112356789999999999999


Q ss_pred             ceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          240 IVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       240 iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ++|+|+||+||++..+ +..++.|||....+..                                               
T Consensus       387 ~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~-----------------------------------------------  419 (524)
T KOG0601|consen  387 FVHLDVKPSNILISNDGFFSKLGDFGCWTRLAF-----------------------------------------------  419 (524)
T ss_pred             hhcccccccceeeccchhhhhccccccccccce-----------------------------------------------
Confidence            9999999999999886 7789999998632110                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcc--cchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYL--APEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~--APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ......++-.++  +++......+..++|++|||..+.+.++|...
T Consensus       420 ----------------------------------~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~l  465 (524)
T KOG0601|consen  420 ----------------------------------SSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPL  465 (524)
T ss_pred             ----------------------------------ecccccccccccccchhhccccccccccccccccccccccccCccc
Confidence                                              001112233333  55555556689999999999999999988654


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      -....   ....+..+......  ...       .+++.+...++..++..|+.+.    ++..|.=|
T Consensus       466 s~~~~---~~~~i~~~~~p~~~--~~~-------~~~q~~~kv~~~~~~~~~~l~~----~l~~~~~~  517 (524)
T KOG0601|consen  466 SESGV---QSLTIRSGDTPNLP--GLK-------LQLQVLLKVMINPDRKRRPSAV----ELSLHSEF  517 (524)
T ss_pred             Ccccc---cceeeecccccCCC--chH-------HhhhhhhhhhcCCccccchhhh----hhcccchh
Confidence            32221   11222222221111  111       2478899999999999999987    77777544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.39  E-value=2.2e-12  Score=132.76  Aligned_cols=116  Identities=20%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             CCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccc
Q 010140          113 PQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS  192 (517)
Q Consensus       113 ~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~  192 (517)
                      .+.+|.|.+.+....   .......+-+.-|+.++||||+++++.++..+.+|||+|.+.  .|..++....        
T Consensus        36 ~~~~vsVF~~~~~~~---~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~--------  102 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNG---EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG--------  102 (690)
T ss_pred             cCCceEEEEEeCCCc---hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH--------
Confidence            445566666544322   223334446778999999999999999999999999999984  5666665542        


Q ss_pred             hhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH-hcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       193 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH-~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      ..                         .+...+.||+.||.||| +.+++|++|.-+-|+|+..|..||++|-++
T Consensus       103 ~~-------------------------~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v  152 (690)
T KOG1243|consen  103 KE-------------------------EVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELV  152 (690)
T ss_pred             HH-------------------------HHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEE
Confidence            00                         11245789999999998 568999999999999999999999999886

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.32  E-value=1.5e-11  Score=111.94  Aligned_cols=144  Identities=17%  Similarity=0.110  Sum_probs=94.6

Q ss_pred             eeeeccceeEEEEEEEecCC-CCCCCceeeeeecchHHHH-------H------------HHHHhH----HHHHHHHHHh
Q 010140           90 RRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALA-------I------------RKKLHR----ADMEKVILTM  145 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~-~~~~~~~vAiK~i~~~~~~-------~------------~~~~~~----~~~E~~il~~  145 (517)
                      ..||.|-=+.||.|...+.. ....+..+|||+.+.....       .            ......    .++|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999754310 0012468999997532110       0            001112    2379999999


Q ss_pred             cC--CCCccceeeeeecCceeEEEEEecCCCchhHH-HHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhh
Q 010140          146 LD--HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYR  222 (517)
Q Consensus       146 l~--HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (517)
                      +.  .-++.+.+++    ..-+|||||+.++.+..- +...   .+..                            .+..
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~---~~~~----------------------------~~~~  127 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA---KLND----------------------------EEMK  127 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc---ccCH----------------------------HHHH
Confidence            85  3567777765    456899999965444211 1110   0110                            0112


Q ss_pred             HHHHHHHHHHHHH-HhcCceeccCCCCceEEccCCcEEeccCCCcccc
Q 010140          223 FYAAETLLALEYL-HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       223 ~~~~qi~~aL~yL-H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~  269 (517)
                      .+..|++.+|..| |..||||+||++.|||+. ++.+.|+|||.+-..
T Consensus       128 ~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         128 NAYYQVLSMMKQLYKECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             HHHHHHHHHHHHHHHhCCeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            4568999999999 899999999999999996 578999999988543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.32  E-value=2.8e-11  Score=106.42  Aligned_cols=134  Identities=22%  Similarity=0.188  Sum_probs=99.1

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeec-----chHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-----DREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i-----~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      ..+++|+-+.+|.+...+       ..+.+|.-     ....+..+-...+..+|..++.++.--.|..-+=++.+.+..
T Consensus         2 ~~i~~GAEa~i~~~~~~g-------~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~   74 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLG-------LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNG   74 (204)
T ss_pred             chhhCCcceeEEeeeccC-------cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Confidence            357889999999986653       23455542     223334444556777899999998765655544455566777


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      .|+|||++|-.|.+.+....                                     -.+++.+=.-+.-||..||||+|
T Consensus        75 ~I~me~I~G~~lkd~l~~~~-------------------------------------~~~~r~vG~~vg~lH~~givHGD  117 (204)
T COG3642          75 LIVMEYIEGELLKDALEEAR-------------------------------------PDLLREVGRLVGKLHKAGIVHGD  117 (204)
T ss_pred             EEEEEEeCChhHHHHHHhcc-------------------------------------hHHHHHHHHHHHHHHhcCeecCC
Confidence            89999999888887876641                                     03457777888899999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      |.++||++...+ +.++|||++..
T Consensus       118 LTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642         118 LTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CccceEEEeCCc-EEEEECCcccc
Confidence            999999997655 99999999853

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.23  E-value=1.1e-10  Score=102.08  Aligned_cols=145  Identities=21%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeee-----cchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKV-----VDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~-----i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+..|-+|+-+.|+++.+.+       +.+.||.     .+...+...-..++..+|+++|.++.--.|.--.=+|.+..
T Consensus        11 ~l~likQGAEArv~~~~~~G-------e~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~   83 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSG-------EAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY   83 (229)
T ss_pred             cceeeeccceeeEeeeccCC-------ceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC
Confidence            66788999999999998764       4455554     33344444455677788999999987556554444566667


Q ss_pred             eeEEEEEecCC-CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          163 YSCLVMEYCPG-GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       163 ~~~lV~E~~~g-g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      .-+|+|||++| .++.+++.......... +.                           ...++++|-..|.-||.++||
T Consensus        84 ~~~i~ME~~~g~~~vk~~i~~~~~~~~~d-~~---------------------------~~~~~~~iG~~igklH~ndii  135 (229)
T KOG3087|consen   84 GGQIYMEFIDGASTVKDFILSTMEDESED-EG---------------------------LAELARRIGELIGKLHDNDII  135 (229)
T ss_pred             CCeEEEEeccchhHHHHHHHHHccCcccc-hh---------------------------HHHHHHHHHHHHHHhhhCCee
Confidence            77899999966 37777776643221111 11                           124567888889999999999


Q ss_pred             eccCCCCceEEccCC---cEEeccCCCcc
Q 010140          242 YRDLKPENVLVREDG---HIMLSDFDLSF  267 (517)
Q Consensus       242 HrDLKp~NILl~~~~---~vkL~DFGls~  267 (517)
                      |+||..+||++..+|   .+.++|||++.
T Consensus       136 HGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen  136 HGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             cccccccceEEecCCCcCceEEEeecchh
Confidence            999999999997655   45899999984

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.11  E-value=2.5e-10  Score=107.40  Aligned_cols=83  Identities=23%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC--CCccceeeeeecC---cee
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH--PFLPTLYAEFEAS---HYS  164 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~---~~~  164 (517)
                      +.||.|.++.||++...+      ++.|++|+.......  .....+..|+.+++.+.+  .++.+++.+....   +..
T Consensus         4 ~~l~~G~~n~~~~v~~~~------g~~~ilK~~~~~~~~--~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~   75 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG------GRRLVLRRPPPGALL--PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTP   75 (223)
T ss_pred             eecCCCccceEEEEEecC------CcceEEEeCCCcccC--cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCc
Confidence            578999999999998642      367999998654321  123456679999999965  4467778777654   367


Q ss_pred             EEEEEecCCCchhHHH
Q 010140          165 CLVMEYCPGGDLYAAR  180 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l  180 (517)
                      |+||||++|.+|...+
T Consensus        76 ~~v~e~i~G~~l~~~~   91 (223)
T cd05154          76 FYVMERVDGRVLRDRL   91 (223)
T ss_pred             eEEEEEeCCEecCCCC
Confidence            8999999998886643

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.06  E-value=6.6e-11  Score=122.48  Aligned_cols=174  Identities=19%  Similarity=0.276  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHhc-CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcc
Q 010140          226 AETLLALEYLHMM-GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVL  304 (517)
Q Consensus       226 ~qi~~aL~yLH~~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (517)
                      .+++.||.|+|.. ++||+.|.|++|.++.+|..||+.|+++........+....++                       
T Consensus       106 ~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd-----------------------  162 (700)
T KOG2137|consen  106 GNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYD-----------------------  162 (700)
T ss_pred             hcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCC-----------------------
Confidence            4677999999976 8999999999999999999999999987332221111100000                       


Q ss_pred             ccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHH
Q 010140          305 SCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLG  384 (517)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlG  384 (517)
                                                                    .....-..-...|.|||++.+...+.++|++|+|
T Consensus       163 ----------------------------------------------~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG  196 (700)
T KOG2137|consen  163 ----------------------------------------------PPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLG  196 (700)
T ss_pred             ----------------------------------------------CCCChhhccCcccccchhhccccccccccceeee
Confidence                                                          0000111234579999999998889999999999


Q ss_pred             HHHHHHh-hCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          385 VFLYEML-YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       385 vil~ell-tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      |++|.+. .|+.-+.+......+ ...............    -..+.++++=|.++|..++..||++.    +++.-||
T Consensus       197 ~li~~i~~~gk~i~~a~~~~~~~-~~~~~~~~~~~~~~s----~~~p~el~~~l~k~l~~~~~~rp~~~----~l~~~~f  267 (700)
T KOG2137|consen  197 VLIYTIYNGGKSIIAANGGLLSY-SFSRNLLNAGAFGYS----NNLPSELRESLKKLLNGDSAVRPTLD----LLLSIPF  267 (700)
T ss_pred             eEEEEEecCCcchhhccCCcchh-hhhhccccccccccc----ccCcHHHHHHHHHHhcCCcccCcchh----hhhcccc
Confidence            9999999 556656554332222 221111111111111    12223589999999999999999887    8999999


Q ss_pred             cCCCCcccccCCCC
Q 010140          464 FKGINWALIRSIKP  477 (517)
Q Consensus       464 f~~~~~~~~~~~~p  477 (517)
                      |.+.--..++...+
T Consensus       268 f~D~~~~aLrfLD~  281 (700)
T KOG2137|consen  268 FSDPGLKALRFLDD  281 (700)
T ss_pred             cCCchhhhhhhccc
Confidence            99987777766543

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.01  E-value=4.2e-09  Score=101.33  Aligned_cols=104  Identities=18%  Similarity=0.019  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCCc--cceeeeeec-----CceeEEEEEecCCC-chhHHHHhCCCCccCccchhhhhhhhhhhhhcC
Q 010140          136 ADMEKVILTMLDHPFL--PTLYAEFEA-----SHYSCLVMEYCPGG-DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN  207 (517)
Q Consensus       136 ~~~E~~il~~l~HpnI--v~l~~~~~~-----~~~~~lV~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  207 (517)
                      +.+|...+.+|..-+|  +.++.+++.     ....+||||++++. +|.+++...........                
T Consensus        75 a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~----------------  138 (268)
T PRK15123         75 ADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPR----------------  138 (268)
T ss_pred             HHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHH----------------
Confidence            5678888888854333  344445543     23578999999876 78888754211111111                


Q ss_pred             CccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEcc-------CCcEEeccCCCcc
Q 010140          208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE-------DGHIMLSDFDLSF  267 (517)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~-------~~~vkL~DFGls~  267 (517)
                                  ..+.++.+++..+.-||..||+|+|+++.|||++.       ++.+.|+||+.+.
T Consensus       139 ------------~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        139 ------------LKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence                        11356789999999999999999999999999975       4689999999874

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.97  E-value=5.3e-09  Score=94.93  Aligned_cols=128  Identities=23%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             EEEEEEEecCCCCCCCceeeeeecchHHH-----------------------HHHHHHhHHHHHHHHHHhcCCC--Cccc
Q 010140           99 NVYLCQIRNPMVGLPQCFYAMKVVDREAL-----------------------AIRKKLHRADMEKVILTMLDHP--FLPT  153 (517)
Q Consensus        99 ~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-----------------------~~~~~~~~~~~E~~il~~l~Hp--nIv~  153 (517)
                      .||.|...+      +..+|||+.+....                       ..........+|.+.|.++..-  ++.+
T Consensus         1 ~Vy~~~~~~------~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~   74 (188)
T PF01163_consen    1 DVYHAIDPD------GEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPK   74 (188)
T ss_dssp             EEEEEEECT------TEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--
T ss_pred             CEEEEECCC------CCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCc
Confidence            378887653      56788888653211                       0111234566799999999755  5677


Q ss_pred             eeeeeecCceeEEEEEecC--CCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          154 LYAEFEASHYSCLVMEYCP--GGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       154 l~~~~~~~~~~~lV~E~~~--gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      ++++.    .-+|||||++  |..+..+....    +...                            ....++.+++..
T Consensus        75 p~~~~----~~~ivME~I~~~G~~~~~l~~~~----~~~~----------------------------~~~~~~~~il~~  118 (188)
T PF01163_consen   75 PYDYN----RNVIVMEYIGEDGVPLPRLKDVD----LSPE----------------------------EPKELLEEILEE  118 (188)
T ss_dssp             EEEEE----TTEEEEE--EETTEEGGCHHHCG----GGGS----------------------------THHHHHHHHHHH
T ss_pred             EEEEe----CCEEEEEecCCCccchhhHHhcc----ccch----------------------------hHHHHHHHHHHH
Confidence            77553    3469999997  55554332211    0001                            112456788885


Q ss_pred             HHH-HHhcCceeccCCCCceEEccCCcEEeccCCCcccc
Q 010140          232 LEY-LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       232 L~y-LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~  269 (517)
                      +.. +|..||||+||.+.|||++.+ .+.|+|||.+...
T Consensus       119 ~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  119 IIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHHHHHCTTEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHHHHHhcCceecCCChhhEEeecc-eEEEEecCcceec
Confidence            555 579999999999999999877 8999999988543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.82  E-value=6e-08  Score=97.55  Aligned_cols=146  Identities=17%  Similarity=0.104  Sum_probs=99.5

Q ss_pred             eEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec----CceeEEEEEecCC
Q 010140           98 GNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA----SHYSCLVMEYCPG  173 (517)
Q Consensus        98 G~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----~~~~~lV~E~~~g  173 (517)
                      .+.|+|....     ++..|++|.+.-.......+   ...-+++++++.|+|||++.++|..    +.-++||++|.++
T Consensus       290 ~Ttyk~~s~~-----DG~~YvLkRlhg~r~~~~nk---~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~  361 (655)
T KOG3741|consen  290 ITTYKATSNV-----DGNAYVLKRLHGDRDQSTNK---DTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPS  361 (655)
T ss_pred             ceeEeeeecc-----CCceeeeeeeccccccCccc---chHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCC
Confidence            4678887765     78889999994332221111   1124678999999999999999973    4468999999886


Q ss_pred             -CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEE
Q 010140          174 -GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV  252 (517)
Q Consensus       174 -g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl  252 (517)
                       ++|.++.-......-....               .-++......+..+..|+.||..||.++|+.|+.-+-|.|.+||+
T Consensus       362 s~TL~d~~F~~~~~t~~~n~---------------~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv  426 (655)
T KOG3741|consen  362 SPTLYDLYFANPPFTKRTNS---------------FYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILV  426 (655)
T ss_pred             CchHHHHHccCCcccccccc---------------ccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEe
Confidence             5676653322111100000               001122223334455789999999999999999999999999999


Q ss_pred             ccCCcEEeccCCCc
Q 010140          253 REDGHIMLSDFDLS  266 (517)
Q Consensus       253 ~~~~~vkL~DFGls  266 (517)
                      +.+.+++|..-|..
T Consensus       427 ~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  427 TGKMRIRISGCGIM  440 (655)
T ss_pred             eCcceEEEecccce
Confidence            99888888877654

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.77  E-value=4.8e-08  Score=91.31  Aligned_cols=136  Identities=25%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-------------------HHHHhHHHHHHHHHHhc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-------------------RKKLHRADMEKVILTML  146 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-------------------~~~~~~~~~E~~il~~l  146 (517)
                      +.++..||-|.=|.||.|...      .+..+|||.-+-.....                   .-.....++|..+|.+|
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~------~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L  166 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP------KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRL  166 (304)
T ss_pred             HhhccccccCccceEEEEECC------CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHh
Confidence            457789999999999999876      36789999743221110                   01123456789999999


Q ss_pred             CCC--CccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHH
Q 010140          147 DHP--FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY  224 (517)
Q Consensus       147 ~Hp--nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (517)
                      ...  .|.+.+++    +..++||||++|-.|.....       .....                            ..+
T Consensus       167 ~~~G~~VP~P~~~----nRHaVvMe~ieG~eL~~~r~-------~~en~----------------------------~~i  207 (304)
T COG0478         167 YPEGVKVPKPIAW----NRHAVVMEYIEGVELYRLRL-------DVENP----------------------------DEI  207 (304)
T ss_pred             hhcCCCCCCcccc----ccceeeeehcccceeecccC-------cccCH----------------------------HHH
Confidence            655  67777654    45679999999877754321       11111                            133


Q ss_pred             HHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       225 ~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      +..|+.-+.-+-..||||+|+.+=|||++.+|.+.++||--+
T Consensus       208 l~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~  249 (304)
T COG0478         208 LDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWPQA  249 (304)
T ss_pred             HHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEeCccc
Confidence            455555555555899999999999999999999999999865

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.76  E-value=1.3e-07  Score=87.87  Aligned_cols=126  Identities=27%  Similarity=0.164  Sum_probs=86.4

Q ss_pred             CCceeeeeecchHHH----HHHHHHhHHHHHHHHHHhcCCCC--ccceeeeeecC----ceeEEEEEecCCC-chhHHHH
Q 010140          113 PQCFYAMKVVDREAL----AIRKKLHRADMEKVILTMLDHPF--LPTLYAEFEAS----HYSCLVMEYCPGG-DLYAARQ  181 (517)
Q Consensus       113 ~~~~vAiK~i~~~~~----~~~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~~~~~----~~~~lV~E~~~gg-~L~~~l~  181 (517)
                      ..+.|-+|.......    ...-...+..+|...+..|..-.  +++.+.+.+..    ...+||+|+++|. +|.+++.
T Consensus        31 ~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~  110 (206)
T PF06293_consen   31 VGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQ  110 (206)
T ss_pred             cceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHH
Confidence            446677775432211    11122345667888888875333  45566665542    2458999999884 7888877


Q ss_pred             hCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCC---cE
Q 010140          182 RQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG---HI  258 (517)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~---~v  258 (517)
                      ....  .....                            .+.++.+++..+.-||.+||+|+|+++.|||++.++   .+
T Consensus       111 ~~~~--~~~~~----------------------------~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~  160 (206)
T PF06293_consen  111 QWEQ--LDPSQ----------------------------RRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRF  160 (206)
T ss_pred             hhcc--cchhh----------------------------HHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeE
Confidence            6321  11111                            135678999999999999999999999999999887   89


Q ss_pred             EeccCCCccc
Q 010140          259 MLSDFDLSFK  268 (517)
Q Consensus       259 kL~DFGls~~  268 (517)
                      .|+||+.++.
T Consensus       161 ~lIDld~~~~  170 (206)
T PF06293_consen  161 YLIDLDRMRF  170 (206)
T ss_pred             EEEcchhcee
Confidence            9999998754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.74  E-value=1.6e-07  Score=86.09  Aligned_cols=140  Identities=19%  Similarity=0.194  Sum_probs=92.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHH------HHHHHHHHhcCC---CCc
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA------DMEKVILTMLDH---PFL  151 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~------~~E~~il~~l~H---pnI  151 (517)
                      +..++|.+++.+-......|.+....       ++.+.+|..+.........+..+      .+++..+.++..   -..
T Consensus        28 i~~~~~~~~kv~k~~~r~~ValIei~-------~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~  100 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRNYVALIEID-------GKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEP  100 (229)
T ss_pred             HHhCCceEEEeecCCCccEEEEEEEC-------CcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCcccc
Confidence            34578999999999888888877643       47899999876543322222222      223333333322   222


Q ss_pred             cceeeeee-----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHH
Q 010140          152 PTLYAEFE-----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAA  226 (517)
Q Consensus       152 v~l~~~~~-----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (517)
                      ..++-+.+     -....+|||||++|..|.+...-.      .                                .+..
T Consensus       101 ~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~------e--------------------------------~~~~  142 (229)
T PF06176_consen  101 ADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIEDID------E--------------------------------DLAE  142 (229)
T ss_pred             ccceeeeeeeeccceeEEEEEEEEecCeecccchhcC------H--------------------------------HHHH
Confidence            23222222     223456999999998886542110      0                                1235


Q ss_pred             HHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       227 qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      .|+.++.-||+.|+.|+|..|.|++++.++ ++++||+..
T Consensus       143 ki~~~ikqlH~~G~~HGD~hpgNFlv~~~~-i~iID~~~k  181 (229)
T PF06176_consen  143 KIVEAIKQLHKHGFYHGDPHPGNFLVSNNG-IRIIDTQGK  181 (229)
T ss_pred             HHHHHHHHHHHcCCccCCCCcCcEEEECCc-EEEEECccc
Confidence            678899999999999999999999998655 999999875

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.68  E-value=1.7e-07  Score=92.14  Aligned_cols=149  Identities=21%  Similarity=0.254  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCC
Q 010140          223 FYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQP  302 (517)
Q Consensus       223 ~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (517)
                      +.++.|+.+.+-||..|.+-+|+.++|+|+++++.|.|.|-..-..+.                                
T Consensus       121 rvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~--------------------------------  168 (637)
T COG4248         121 RVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINA--------------------------------  168 (637)
T ss_pred             HHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccceeecc--------------------------------
Confidence            678999999999999999999999999999999999998854221110                                


Q ss_pred             ccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCcc
Q 010140          303 VLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSA  377 (517)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~  377 (517)
                                                                     .+......+|.+.|.+||.-.     +..-+..
T Consensus       169 -----------------------------------------------ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~  201 (637)
T COG4248         169 -----------------------------------------------NGTLHLCPVGVSEFTPPELQTLPSFVGFERTAN  201 (637)
T ss_pred             -----------------------------------------------CCceEecccCccccCCHHHhccccccccCCCcc
Confidence                                                           011123347999999999865     2334678


Q ss_pred             chHHHHHHHHHHHhhC-CCCCCCCC-------hHHHHHHHhcCCC------CCCCCCCCCchhHH-hhhhHHHHHHHhcc
Q 010140          378 VDWWTLGVFLYEMLYG-TTPFKGEN-------NEKTLINILKKPL------TFPRIGVSSSKEFE-EVVKLQDLISKLLV  442 (517)
Q Consensus       378 ~DiWSlGvil~elltG-~~Pf~~~~-------~~~~~~~i~~~~~------~~p~~~~~~~~~~~-~~~~l~dLi~~~L~  442 (517)
                      .|.|.|||++|+++.| +.||.|..       +.+  ..|..+.+      ..+....+....|. ..+.++.|..+|+.
T Consensus       202 hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E--~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~  279 (637)
T COG4248         202 HDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLE--TDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFT  279 (637)
T ss_pred             ccchhHHHHHHHHHhcCCCCCCcccccCCCCCcch--hhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhc
Confidence            9999999999999986 99998642       112  12221111      00111111111122 22457888888886


Q ss_pred             CC--cccccCCC
Q 010140          443 KN--PKKRIGSL  452 (517)
Q Consensus       443 ~d--P~~R~t~~  452 (517)
                      .-  +.-||+++
T Consensus       280 ~~~~~~~RP~a~  291 (637)
T COG4248         280 ESGVATPRPTAK  291 (637)
T ss_pred             ccCCCCCCCCHH
Confidence            53  56899973

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.59  E-value=1.6e-08  Score=103.85  Aligned_cols=286  Identities=18%  Similarity=0.203  Sum_probs=179.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecCce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEASHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~  163 (517)
                      -+.....+++|+++.+++.+...      .+....+.+...        .....++++|.+++||| .+..++-++.+.+
T Consensus       243 ws~~fh~fvK~altknpKkRpta------eklL~h~fvs~~--------l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~  308 (829)
T KOG0576|consen  243 WSEFFHNFVKGALTKNPKKRPTA------EKLLQHPFVSQT--------LSRRLAIELLDKVNNPNPVVRYLEDYDGEDY  308 (829)
T ss_pred             chHHHHHHHHHHhcCCCccCCCh------hhheeceeeccc--------hhhHHHHHHHHHccCCCCcccccccCCcccc
Confidence            46667788999999999887553      233346666443        11223788999999999 7888888888899


Q ss_pred             eEEEEEecCCC-chhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          164 SCLVMEYCPGG-DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+++|+++.++ +-..        .....+..                     .-..+...+.+.-+++|+|||+.-=+|
T Consensus       309 ~~i~~~i~s~~rs~~~--------~~~~se~~---------------------~~~~~~~~~~r~et~~l~~l~~~~~~~  359 (829)
T KOG0576|consen  309 LWIPMRICSTGRSSAL--------EMTVSEIA---------------------LEQYQFAYPLRKETRPLAELHSSYKVH  359 (829)
T ss_pred             cchhhhhhcCCccccc--------cCChhhHh---------------------hhhhhhhhhhhhhcccccccccccccC
Confidence            99999999776 2111        01111111                     001112345667788999999988789


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      ||    ||+..+ +..++.||+....+..                                                   
T Consensus       360 ~d----~~l~s~-~~~~~~~~~v~~~L~~---------------------------------------------------  383 (829)
T KOG0576|consen  360 RD----NILGSE-EEVKLLDFAVPPQLTR---------------------------------------------------  383 (829)
T ss_pred             cc----cccccc-cccccccccCCcccCc---------------------------------------------------
Confidence            99    887765 6789999998632221                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ....+++.+|+.++|||+.....+....|+|++|+-..+|.-|.+|-...  
T Consensus       384 ----------------------------~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~P--  433 (829)
T KOG0576|consen  384 ----------------------------TMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSSP--  433 (829)
T ss_pred             ----------------------------ccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCCC--
Confidence                                        00234567999999999999999999999999999888888887775441  


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN  482 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~~  482 (517)
                      ......+-.+. ..+.....  ..|. ...-.++...|+..-|..|+...    .++.|.+|++..- .+....+.+-|.
T Consensus       434 ~~~~~~~g~~p-~s~~L~~~--~aw~-~~~~~~~~~~~~~g~P~~pkv~m----gacfsKvfngCpl-~i~~aaswIhp~  504 (829)
T KOG0576|consen  434 PAVLPMIGNGP-NSPMLTDK--SAWS-PVFHRDFPAPCLNGLPPTPKVHM----GACFSKVFNGCPL-RIHCAASWIHPS  504 (829)
T ss_pred             ccccCCCCCCC-Cccccchh--hhcC-cccccCCcccccCCCCCCCcchh----hHHHHHHhccCcc-cceecccccCcc
Confidence            11111110110 00000000  0000 00112577889999999999887    8999999998643 233333332222


Q ss_pred             ---CccccccccccccCCCCccccCCCCC
Q 010140          483 ---NDLYCKIKKKVYVPKLSKQERDAPYQ  508 (517)
Q Consensus       483 ---~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (517)
                         ..+.....+-.|.+.++......+.+
T Consensus       505 t~dq~ll~gaeegIy~lnlnel~e~~le~  533 (829)
T KOG0576|consen  505 TRDQALLFGAEEGIYTLNLNELHEATLEK  533 (829)
T ss_pred             hhhhHhhhhhccceeeccccccccccHhh
Confidence               23344455566666666544444333

>PRK09902 hypothetical protein; Provisional

Probab=98.52  E-value=6.8e-07  Score=81.78  Aligned_cols=140  Identities=12%  Similarity=0.045  Sum_probs=92.7

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH---HHHHhHHHHHHHHHHhcCCCC--ccceeeeee---c--C
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI---RKKLHRADMEKVILTMLDHPF--LPTLYAEFE---A--S  161 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~~~---~--~  161 (517)
                      -|+||.+-|+.....+       +.|-+|.-.......   ..-...+.+|...|.+|..-+  +.+.. ++.   .  .
T Consensus        26 ~~rgG~SgV~r~~~~g-------~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~   97 (216)
T PRK09902         26 YRRNGMSGVQCVERNG-------KKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGE   97 (216)
T ss_pred             cCCCCcceEEEEEeCC-------cEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCc
Confidence            3568889999876554       357777654211110   122345677999888884322  44444 222   1  1


Q ss_pred             ceeEEEEEecCC-CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          162 HYSCLVMEYCPG-GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       162 ~~~~lV~E~~~g-g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      -..+||+|-+.| -||.+++......+.+....                            +.++.+++..|.-||+.|+
T Consensus        98 ~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k----------------------------~~il~~va~~ia~LH~~Gv  149 (216)
T PRK09902         98 WRALLVTEDMAGFISIADWYAQHAVSPYSDEVR----------------------------QAMLKAVALAFKKMHSVNR  149 (216)
T ss_pred             eEEEEEEEeCCCCccHHHHHhcCCcCCcchHHH----------------------------HHHHHHHHHHHHHHHHCCC
Confidence            236899998743 58887775543222222211                            2467899999999999999


Q ss_pred             eeccCCCCceEEccCCc--EEeccCCCcc
Q 010140          241 VYRDLKPENVLVREDGH--IMLSDFDLSF  267 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~--vkL~DFGls~  267 (517)
                      .|+|+-+.|||++.+|.  ++++||--++
T Consensus       150 ~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        150 QHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             cCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            99999999999987777  9999998663

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.43  E-value=1.4e-06  Score=90.92  Aligned_cols=143  Identities=23%  Similarity=0.206  Sum_probs=89.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-------------------------------HHHHhH---
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-------------------------------RKKLHR---  135 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-------------------------------~~~~~~---  135 (517)
                      ..|+.++-|.||+|+.++      ++.||||+.+.+-...                               .+..+.   
T Consensus       131 ~PiAsASIaQVH~A~L~s------G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~  204 (517)
T COG0661         131 EPIASASIAQVHRAVLKS------GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLRE  204 (517)
T ss_pred             CchhhhhHhhheeEEecC------CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHH
Confidence            578999999999999984      6899999987542110                               000111   


Q ss_pred             ---HHHHHHHHHhc-----CCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcC
Q 010140          136 ---ADMEKVILTML-----DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN  207 (517)
Q Consensus       136 ---~~~E~~il~~l-----~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  207 (517)
                         +.+|..-+.++     +.|+|.--.=+++-...-.|+|||++|..+.+...... .....                 
T Consensus       205 ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~-----------------  266 (517)
T COG0661         205 ELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS-AGIDR-----------------  266 (517)
T ss_pred             HhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHh-cCCCH-----------------
Confidence               22344444444     23443221222333456689999999988877632211 11111                 


Q ss_pred             CccccccchhhhhhhHHHHHHHHH-HHHHHhcCceeccCCCCceEEccCCcEEeccCCCccccc
Q 010140          208 LGFVHTDVTLFFNYRFYAAETLLA-LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD  270 (517)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~qi~~a-L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~  270 (517)
                                    +.++..++.+ +..+-..|+.|.|..|.||+++.+|++.+.|||+...++
T Consensus       267 --------------k~ia~~~~~~f~~q~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         267 --------------KELAELLVRAFLRQLLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             --------------HHHHHHHHHHHHHHHHhcCccccCCCccceEEecCCcEEEEcCcceecCC
Confidence                          1222222222 233345899999999999999999999999999986655

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.43  E-value=1e-06  Score=83.12  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC--ccceeeeeecCceeEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF--LPTLYAEFEASHYSCLV  167 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~~~~~~~~~lV  167 (517)
                      ..||+|..+.||++.         +..+++|......     ....+.+|.++++.+..-.  +.+.+++.+..+...+|
T Consensus         7 ~~i~~G~t~~~y~~~---------~~~~VlR~~~~~~-----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv   72 (226)
T TIGR02172         7 TQTGEGGNGESYTHK---------TGKWMLKLYNPGF-----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLI   72 (226)
T ss_pred             eeecCCCCcceeEec---------CCCEEEEeCCCCC-----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeee
Confidence            578999999999841         2347788876532     1223456999999886433  56778888888888999


Q ss_pred             EEecCCCc
Q 010140          168 MEYCPGGD  175 (517)
Q Consensus       168 ~E~~~gg~  175 (517)
                      ||+++|.+
T Consensus        73 ~e~i~G~~   80 (226)
T TIGR02172        73 YELIVGKR   80 (226)
T ss_pred             eeecCCcc
Confidence            99998864

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.36  E-value=4.9e-06  Score=75.54  Aligned_cols=128  Identities=26%  Similarity=0.284  Sum_probs=90.2

Q ss_pred             CCceEEeeeeccce-eEEEEEEEecCCCCCCCceeeeeecchH----------HHH--------HHHHHhHHHHHHHHHH
Q 010140           84 DHFRLLRRLGSGDI-GNVYLCQIRNPMVGLPQCFYAMKVVDRE----------ALA--------IRKKLHRADMEKVILT  144 (517)
Q Consensus        84 ~~y~i~~~LG~G~f-G~Vy~~~~~~~~~~~~~~~vAiK~i~~~----------~~~--------~~~~~~~~~~E~~il~  144 (517)
                      .+++.++.||.|.- |.||+++..+       +.||+|+...-          ...        ......-+..|.+...
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g-------~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfg  109 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDG-------RIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFG  109 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECC-------eEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhH
Confidence            68999999999999 9999998764       79999993210          000        0123345677888766


Q ss_pred             hc---CCCCc--cceeeeeecC------------------ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhh
Q 010140          145 ML---DHPFL--PTLYAEFEAS------------------HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF  201 (517)
Q Consensus       145 ~l---~HpnI--v~l~~~~~~~------------------~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~  201 (517)
                      +|   .+.++  |+++||+.-.                  ....||.||++...-           +.            
T Consensus       110 RLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~~-----------~~------------  166 (207)
T PF13095_consen  110 RLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDPP-----------LQ------------  166 (207)
T ss_pred             HHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCccc-----------cc------------
Confidence            66   45566  8999988321                  113567777654330           00            


Q ss_pred             hhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                                          -.-+.+|.+-|..+|..||+-+|+|+.|..     .-||+|||.+
T Consensus       167 --------------------~~~~~~~~~dl~~~~k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  167 --------------------IRDIPQMLRDLKILHKLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             --------------------hhHHHHHHHHHHHHHHCCeeeccCcccccc-----CCEEEecccC
Confidence                                022478999999999999999999999987     2489999864

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.34  E-value=6.4e-06  Score=76.50  Aligned_cols=140  Identities=21%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHH---------------------HhHHHHHHHHHHhcC-
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK---------------------LHRADMEKVILTMLD-  147 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~---------------------~~~~~~E~~il~~l~-  147 (517)
                      ..|..|.-+.||+|...      .+..+|+|+.+......+..                     ..-..+|..-|+++. 
T Consensus        54 g~istGKEA~Vy~a~~~------~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~e  127 (268)
T COG1718          54 GCISTGKEANVYLAETG------DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYE  127 (268)
T ss_pred             eeecCCcceEEEeeccC------CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888899999764      35789999987554322211                     111345777777773 


Q ss_pred             -CCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHH
Q 010140          148 -HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAA  226 (517)
Q Consensus       148 -HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (517)
                       +=.+.+-+.+..    -.|||||+.. ...-   ...-+..+...                          .+...+..
T Consensus       128 AGVrvP~Pi~~~~----nVLvMEfIg~-~g~p---AP~LkDv~~e~--------------------------~e~~~~~~  173 (268)
T COG1718         128 AGVRVPEPIAFRN----NVLVMEFIGD-DGLP---APRLKDVPLEL--------------------------EEAEGLYE  173 (268)
T ss_pred             cCCCCCCceeecC----CeEEEEeccC-CCCC---CCCcccCCcCc--------------------------hhHHHHHH
Confidence             445556565543    3699999943 3110   00001111100                          01234557


Q ss_pred             HHHHHHHHHHh-cCceeccCCCCceEEccCCcEEeccCCCccccc
Q 010140          227 ETLLALEYLHM-MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCD  270 (517)
Q Consensus       227 qi~~aL~yLH~-~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~  270 (517)
                      ++++.+.-|-. .++||+||..=|||+. ++.+.|+|||-|-...
T Consensus       174 ~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         174 DVVEYMRRLYKEAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             HHHHHHHHHHHhcCcccccchhhheEEE-CCeEEEEECccccccC
Confidence            88888887776 8999999999999998 8899999999885443

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.30  E-value=1e-05  Score=76.40  Aligned_cols=78  Identities=26%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC--Cccceeeeee---cCce
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP--FLPTLYAEFE---ASHY  163 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~~---~~~~  163 (517)
                      ++.|+.|..+.||++...+       ..+++|+....     .....+..|..+++.+...  -+.+++....   ....
T Consensus         2 i~~l~~G~~n~~~~v~~~~-------~~~vlK~~~~~-----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~   69 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-------GRYVLKFYRPP-----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGF   69 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-------SEEEEEEESSH-----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSE
T ss_pred             CccCCCCCeeeEEEEEECC-------cEEEEEEeCCC-----CCHHHHHHHHHHHHHHHhcCCCCceEEeeccccccccc
Confidence            5689999999999998653       57999998765     2233444588888888433  3566666442   3345


Q ss_pred             eEEEEEecCCCchhH
Q 010140          164 SCLVMEYCPGGDLYA  178 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~  178 (517)
                      .+++|++++|..+..
T Consensus        70 ~~~~~~~i~g~~~~~   84 (239)
T PF01636_consen   70 PYLLMEYIPGRPLDD   84 (239)
T ss_dssp             EEEEEEEESSEEHHH
T ss_pred             ceEEEEEeccccccc
Confidence            799999999988776

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.27  E-value=6e-06  Score=78.95  Aligned_cols=76  Identities=17%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             eeeccce-eEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCceeEEEE
Q 010140           91 RLGSGDI-GNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHYSCLVM  168 (517)
Q Consensus        91 ~LG~G~f-G~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV~  168 (517)
                      .|-.|.. ..||++...       +..+.+|+.....      ...+.+|+.+++.+. +--+.+++++...++..++||
T Consensus         5 ~~~~g~~~~~v~~~~~~-------~~~~~vk~~~~~~------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~   71 (244)
T cd05150           5 RVTEGQSGATVYRLDGK-------NPGLYLKIAPSGP------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLT   71 (244)
T ss_pred             ecCCCCCcCeEEEEcCC-------CCcEEEEecCCCc------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEE
Confidence            3445555 789988643       2467888876542      223445888888883 444668888887777789999


Q ss_pred             EecCCCchhHH
Q 010140          169 EYCPGGDLYAA  179 (517)
Q Consensus       169 E~~~gg~L~~~  179 (517)
                      |+++|.+|...
T Consensus        72 e~i~G~~l~~~   82 (244)
T cd05150          72 SAVPGVPAAAL   82 (244)
T ss_pred             EeeCCccHhHh
Confidence            99999877643

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=5.8e-06  Score=90.98  Aligned_cols=204  Identities=22%  Similarity=0.253  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHhcCCCCccceeeeeecCce----eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCc
Q 010140          134 HRADMEKVILTMLDHPFLPTLYAEFEASHY----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLG  209 (517)
Q Consensus       134 ~~~~~E~~il~~l~HpnIv~l~~~~~~~~~----~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  209 (517)
                      ...+.|...+.++.|+|++.++.+--....    +.+..|+|..-++...++....  .+                    
T Consensus       227 ~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~--i~--------------------  284 (1351)
T KOG1035|consen  227 QTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGS--IP--------------------  284 (1351)
T ss_pred             HHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccc--cC--------------------
Confidence            334457788888999999999887744322    2345577877777776655321  11                    


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCC---ceEEccCCcEEec--cCCCcccccccccccCCcchHHH
Q 010140          210 FVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE---NVLVREDGHIMLS--DFDLSFKCDVVPKLLRPKLSFEA  284 (517)
Q Consensus       210 ~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~---NILl~~~~~vkL~--DFGls~~~~~~~~~~~~~~~~~~  284 (517)
                              ....|.+..+++.||+|+|+....|.-|-..   +-..+..+.+.++  ||+.++.......          
T Consensus       285 --------~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~----------  346 (1351)
T KOG1035|consen  285 --------LETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEK----------  346 (1351)
T ss_pred             --------HHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCccceeecchhhhcccccCCCccc----------
Confidence                    1123567899999999999996555544444   3333455556665  7776644332111          


Q ss_pred             HhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcc
Q 010140          285 IEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYL  364 (517)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~  364 (517)
                                                                                           .....-+..+.
T Consensus       347 ---------------------------------------------------------------------~~~~~~~~~~~  357 (1351)
T KOG1035|consen  347 ---------------------------------------------------------------------SFSDLLAEIRN  357 (1351)
T ss_pred             ---------------------------------------------------------------------chhhcCccccc
Confidence                                                                                 11123445678


Q ss_pred             cchhhcCCCCCc--cchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhcc
Q 010140          365 APEVISGQGHGS--AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLV  442 (517)
Q Consensus       365 APE~l~~~~~~~--~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~  442 (517)
                      ++|......+..  ..|+|.+|.....+..|..+-....   ....++...         ...      ...+++.+|+.
T Consensus       358 ~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~---~~~~~l~~~---------~~~------~~~d~~~~~~~  419 (1351)
T KOG1035|consen  358 ADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKSA---VPVSLLDVL---------STS------ELLDALPKCLD  419 (1351)
T ss_pred             cccccccccchhhhhhHHHHHHHHHhhhhhcCccccccc---chhhhhccc---------cch------hhhhhhhhhcc
Confidence            888887666544  4699999999999988765532211   111111110         000      26789999999


Q ss_pred             CCcccccCCCCChHHhhcCCCcCCCC
Q 010140          443 KNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       443 ~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      .++++|+.+.    +++.|+|.+.-.
T Consensus       420 ~~~~~Rl~~~----~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  420 EDSEERLSAL----ELLTHPFLRFPT  441 (1351)
T ss_pred             hhhhhccchh----hhhhchhccccc
Confidence            9999999998    999999987543

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.10  E-value=1.4e-05  Score=70.22  Aligned_cols=129  Identities=26%  Similarity=0.277  Sum_probs=91.1

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcc-ceeeeeecCcee
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLP-TLYAEFEASHYS  164 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv-~l~~~~~~~~~~  164 (517)
                      .++.+.||+|++|.||+|.+++       ..+|+|+-+.+     .....+..|+++|..+.-.++. ++|.+-.+    
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~~-------~~~a~Kvrr~d-----s~r~~l~kEakiLeil~g~~~~p~vy~yg~~----   87 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWRG-------GEVALKVRRRD-----SPRRNLEKEAKILEILAGEGVTPEVYFYGED----   87 (201)
T ss_pred             hhhhhhhhcccccEEEEeeccC-------ceEEEEEecCC-----cchhhHHHHHHHHHHhhhcCCCceEEEechh----
Confidence            4567889999999999999875       47899987665     2345566699999999876664 55554433    


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      ++.|||+.|-.|.+.-...        .                             ++-+..++.+---|-..||-|..
T Consensus        88 ~i~me~i~G~~L~~~~~~~--------~-----------------------------rk~l~~vlE~a~~LD~~GI~H~E  130 (201)
T COG2112          88 FIRMEYIDGRPLGKLEIGG--------D-----------------------------RKHLLRVLEKAYKLDRLGIEHGE  130 (201)
T ss_pred             hhhhhhhcCcchhhhhhcc--------c-----------------------------HHHHHHHHHHHHHHHHhccchhh
Confidence            3559999888886653321        0                             12234555664445667999999


Q ss_pred             CC-CCceEEccCCcEEeccCCCcc
Q 010140          245 LK-PENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       245 LK-p~NILl~~~~~vkL~DFGls~  267 (517)
                      |. |..++|..++.+.|+||.-|+
T Consensus       131 l~~~~k~vlv~~~~~~iIDFd~At  154 (201)
T COG2112         131 LSRPWKNVLVNDRDVYIIDFDSAT  154 (201)
T ss_pred             hcCCceeEEecCCcEEEEEccchh
Confidence            96 565666566699999999884

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.01  E-value=4.2e-05  Score=72.72  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=46.8

Q ss_pred             Eeeeecccee-EEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC---CccceeeeeecC---
Q 010140           89 LRRLGSGDIG-NVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP---FLPTLYAEFEAS---  161 (517)
Q Consensus        89 ~~~LG~G~fG-~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp---nIv~l~~~~~~~---  161 (517)
                      ++.|+.|+.. .||+..          ..+++|+.....     ....+.+|.++|..+...   -+.++++.....   
T Consensus         2 ~~~~~~gG~~n~vy~~~----------~~~VlR~~~~~~-----~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~   66 (235)
T cd05155           2 IEPVDSGGTDNATFRLG----------DDMSVRLPSAAG-----YAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGY   66 (235)
T ss_pred             ceeccCCCcccceEEcC----------CceEEEcCCccc-----hHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCC
Confidence            3567777776 499762          136788765432     123566699999887532   344555444332   


Q ss_pred             ceeEEEEEecCCCchhH
Q 010140          162 HYSCLVMEYCPGGDLYA  178 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~  178 (517)
                      ...|+|||+++|.++..
T Consensus        67 ~~~~~l~~~i~G~~l~~   83 (235)
T cd05155          67 PWPWSVYRWLEGETATA   83 (235)
T ss_pred             CcceEEEEeecCCCCCc
Confidence            24589999999988753

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.91  E-value=0.00019  Score=71.12  Aligned_cols=164  Identities=17%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC--Cccceeeee-
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP--FLPTLYAEF-  158 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~~-  158 (517)
                      .++....++.++.|....||++...+       ..+++|+.....     ....+..|..++..|...  .|++++... 
T Consensus        20 ~~~~~~~i~~~~~G~~n~~y~v~t~~-------~~~vLK~~~~~~-----~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~   87 (307)
T TIGR00938        20 DLGELLSLKGIAEGVENSNYLLTTDV-------GRYILTLYEKRV-----KAEELPFFLALTTHLAARGLPVPKPVKSRD   87 (307)
T ss_pred             CCCCceeccccCCccccceEEEEeCC-------CcEEEEEecCCC-----CHHHHHHHHHHHHHHHHCCCCCCccccCCC
Confidence            44556668888889888999986432       357889875421     112233466777776322  244444321 


Q ss_pred             -----ecCceeEEEEEecCCCchhH-----------H---HHhCCCCccCccch---hhhhhhhhhhhhcCCccccccch
Q 010140          159 -----EASHYSCLVMEYCPGGDLYA-----------A---RQRQPGKRFGISSA---KFVFFLLFFFFYNNLGFVHTDVT  216 (517)
Q Consensus       159 -----~~~~~~~lV~E~~~gg~L~~-----------~---l~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~  216 (517)
                           ..++..++||||++|..+..           .   +.... ..++....   ..-.|..  +.....    .. .
T Consensus        88 g~~~~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~-~~~~~~~~~~~~~~~w~~--~~~~~~----~~-~  159 (307)
T TIGR00938        88 GRQLSTLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAG-AHFPENRKNSLRLEAWHI--LAEKCF----EA-A  159 (307)
T ss_pred             CCeehhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhh-ccCCCCCCCCCChHHHHH--HHHhhh----hc-c
Confidence                 23456789999999865421           0   11100 11111000   0000000  000000    00 0


Q ss_pred             hhhhhhHHHHHHHHHHHHHHh-------cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          217 LFFNYRFYAAETLLALEYLHM-------MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       217 ~~~~~~~~~~qi~~aL~yLH~-------~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      ... -......+...++++..       .++||+|+.+.||+++.++.+.|+||+.+
T Consensus       160 ~~l-~~~~~~~l~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~  215 (307)
T TIGR00938       160 PQL-EAHMGAELDKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFA  215 (307)
T ss_pred             ccc-CHHHHHHHHHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeecccc
Confidence            000 00112223344555542       58999999999999998887789999987

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.88  E-value=0.00011  Score=69.75  Aligned_cols=77  Identities=23%  Similarity=0.361  Sum_probs=49.4

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCceeEEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHYSCLV  167 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~~~lV  167 (517)
                      ++.|..|-...||++...+.    .++.|++|+......    ......+|..+++.+. +.-+++++..+..    .+|
T Consensus         3 i~~l~gG~tN~~~~v~~~~~----~~~~~vlR~~~~~~~----~~~d~~~E~~~~~~l~~~gl~P~v~~~~~~----~~l   70 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKED----NQDAVLVRVYGNKTE----LIIDRERELRIHKLLSKHGLAPKLYATFQN----GLI   70 (235)
T ss_pred             EEEcCCcccceEEEEEcCCC----CCCeEEEEEccCCcc----ceecHHHHHHHHHHHHhCCCCCeEEEEeCC----cEE
Confidence            45788888899999864420    136788998754311    1122335888898884 3334566554432    389


Q ss_pred             EEecCCCchh
Q 010140          168 MEYCPGGDLY  177 (517)
Q Consensus       168 ~E~~~gg~L~  177 (517)
                      |||++|.++.
T Consensus        71 ~e~i~G~~l~   80 (235)
T cd05157          71 YEFIPGRTLE   80 (235)
T ss_pred             EEeeCCCcCC
Confidence            9999997763

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.88  E-value=8.6e-05  Score=77.51  Aligned_cols=139  Identities=21%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH----------------------------HHHHhH------
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI----------------------------RKKLHR------  135 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~----------------------------~~~~~~------  135 (517)
                      +.||.-+.|.||+|+.++      ++.||||+-+..-...                            .+..+.      
T Consensus       167 ~piaaASlaQVhrA~L~~------G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELD  240 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN------GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELD  240 (538)
T ss_pred             chhhhcchhheEEEEecC------CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcc
Confidence            689999999999999985      6889999976432110                            000111      


Q ss_pred             HHHHHH----HHHhcCCCC------ccceeeeeecCceeEEEEEecCCCchhHH--HHhCCCCccCccchhhhhhhhhhh
Q 010140          136 ADMEKV----ILTMLDHPF------LPTLYAEFEASHYSCLVMEYCPGGDLYAA--RQRQPGKRFGISSAKFVFFLLFFF  203 (517)
Q Consensus       136 ~~~E~~----il~~l~Hpn------Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~--l~~~~~~~~~~~~~~~~~~~l~~~  203 (517)
                      +.+|.+    +.+.+.|-+      |.++|-  .-...-.|+||||+|.-+.+.  +.+.+-...               
T Consensus       241 F~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~--~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~---------------  303 (538)
T KOG1235|consen  241 FTKEAKNAERFRENFKDFSLLTYVLVPKVYW--DLSTKRVLTMEYVDGIKINDLDAIDKRGISPH---------------  303 (538)
T ss_pred             hHHHHHhHHHHHHHHHhcccccceeCCeehh--hcCcceEEEEEecCCccCCCHHHHHHcCCCHH---------------
Confidence            222332    222334555      444332  223456899999999877654  333221111               


Q ss_pred             hhcCCccccccchhhhhhhHHHHHHHHH-HHHHHhcCceeccCCCCceEEcc----CCcEEeccCCCccccc
Q 010140          204 FYNNLGFVHTDVTLFFNYRFYAAETLLA-LEYLHMMGIVYRDLKPENVLVRE----DGHIMLSDFDLSFKCD  270 (517)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~qi~~a-L~yLH~~~iiHrDLKp~NILl~~----~~~vkL~DFGls~~~~  270 (517)
                                         .++.-+.++ ++-|=..|++|+|=.|.||+++.    ++.+.+-|||+...+.
T Consensus       304 -------------------~i~~~l~~~~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  304 -------------------DILNKLVEAYLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             -------------------HHHHHHHHHHHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence                               122233332 22233578999999999999984    6689999999986554

>PLN02876 acyl-CoA dehydrogenase

Probab=97.86  E-value=0.00015  Score=81.53  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCc--cceeeeeecC---
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFL--PTLYAEFEAS---  161 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnI--v~l~~~~~~~---  161 (517)
                      -++.|+.|.++.+|+.......   ....+++|+.......  .....+.+|..+|+.+. |++|  .+++.++.+.   
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~---~~~~~VLR~~p~~~~~--~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~  116 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGG---SVKRYVLRKKPPGKLL--QSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVI  116 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCC---cceeEEEEeCCCCccC--ccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcC
Confidence            4678899999999998765311   1235777776543211  11234667999999995 6765  7778777654   


Q ss_pred             ceeEEEEEecCCCch
Q 010140          162 HYSCLVMEYCPGGDL  176 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L  176 (517)
                      +..|+||||++|..+
T Consensus       117 G~~flVME~v~G~~~  131 (822)
T PLN02876        117 GTAFYIMEYLEGRIF  131 (822)
T ss_pred             CCceEEEEecCCccc
Confidence            467899999987654

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.83  E-value=0.00019  Score=65.88  Aligned_cols=131  Identities=19%  Similarity=0.191  Sum_probs=86.5

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-------------HHHHHhHHHHHHHHHHhcC------CC
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-------------IRKKLHRADMEKVILTMLD------HP  149 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-------------~~~~~~~~~~E~~il~~l~------Hp  149 (517)
                      ...||+|+.=.||.--        .....+||+.......             .........+|+.....+.      +.
T Consensus         6 ~~~i~~G~~R~cy~HP--------~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~   77 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP--------DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWS   77 (199)
T ss_pred             CcccccCCCceEEECC--------CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccc
Confidence            3469999999999632        2234688988766500             0011234444655544444      88


Q ss_pred             CccceeeeeecCceeEEEEEecCCC------chhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhH
Q 010140          150 FLPTLYAEFEASHYSCLVMEYCPGG------DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRF  223 (517)
Q Consensus       150 nIv~l~~~~~~~~~~~lV~E~~~gg------~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (517)
                      +|.+++|+.+.+...-+|+|.+.+.      +|.+++....   +..                                .
T Consensus        78 ~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~---~~~--------------------------------~  122 (199)
T PF10707_consen   78 HIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG---LTE--------------------------------E  122 (199)
T ss_pred             ccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC---ccH--------------------------------H
Confidence            9999999999999999999987542      4566654321   111                                1


Q ss_pred             HHHHHHHHHHHHHhcCceeccCCCCceEEccCC----cEEecc
Q 010140          224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDG----HIMLSD  262 (517)
Q Consensus       224 ~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~----~vkL~D  262 (517)
                      +...+-.-.+||-+.+|+.+||+|.||++....    .+.|+|
T Consensus       123 ~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  123 LRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEEEEe
Confidence            123334445788999999999999999996432    577887

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.82  E-value=0.00042  Score=70.41  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--H--HHHHhHHHHHHHHHHhcC---CCCccceeeeee
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--I--RKKLHRADMEKVILTMLD---HPFLPTLYAEFE  159 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~--~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~  159 (517)
                      .-.+.||.|.+..||++...+     .++.+.||.-......  .  .-...+...|.+.|..+.   -.++++++.+  
T Consensus        29 ~~~~elggGn~N~VyrV~~~~-----g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--  101 (401)
T PRK09550         29 LTAREIGDGNLNLVFRVSDTE-----GGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--  101 (401)
T ss_pred             ceeeEcCCCceEEEEEEEeCC-----CCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--
Confidence            345789999999999998764     2247899985422110  0  113345666888888762   3467788776  


Q ss_pred             cCceeEEEEEecCCCc
Q 010140          160 ASHYSCLVMEYCPGGD  175 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~  175 (517)
                      +....++||||+++..
T Consensus       102 D~~~~~lVME~L~~~~  117 (401)
T PRK09550        102 DEELAVTVMEDLSDHK  117 (401)
T ss_pred             CCCCCEEEEecCCCcc
Confidence            3455789999998744

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.74  E-value=0.00036  Score=68.78  Aligned_cols=161  Identities=16%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC--Cccceeee----
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP--FLPTLYAE----  157 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~----  157 (517)
                      .+..-++.|..|....+|++...+       ..+++|+....      ....+..|+.++..+.+-  .+.+++..    
T Consensus        14 ~~~~~i~~i~~G~~n~~y~v~~~~-------~~~vLr~~~~~------~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~   80 (296)
T cd05153          14 GELLSFEGISAGIENTNYFVTTDS-------GRYVLTLFEKV------SAEELPFFLALLDHLAERGLPVPRPIADRDGE   80 (296)
T ss_pred             CchhheecccCccccceEEEEeCC-------CcEEEEEcCCC------ChHhccHHHHHHHHHHHCCCCCCccccCCCCc
Confidence            344457788889888999986432       46889987641      112344478888887432  24454432    


Q ss_pred             --eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccc---cchhhhh-----------h
Q 010140          158 --FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHT---DVTLFFN-----------Y  221 (517)
Q Consensus       158 --~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~-----------~  221 (517)
                        ...++..++|++|++|..+...         .......+...|..+-....++...   .....+.           .
T Consensus        81 ~~~~~~~~~~~l~~~i~G~~~~~~---------~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (296)
T cd05153          81 YLSELAGKPAALVEFLAGEHLTRP---------TAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLS  151 (296)
T ss_pred             EeeeeCCceEEEEEeCCCCCCCCC---------CHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccC
Confidence              2334567899999998775320         0000000000000000000000000   0000000           0


Q ss_pred             hHHHHHHHHHHHHHHh-------cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          222 RFYAAETLLALEYLHM-------MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       222 ~~~~~qi~~aL~yLH~-------~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      ......+..++.++..       .++||+|+.|.|||++.++.+.|+||+.+
T Consensus       152 ~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a  203 (296)
T cd05153         152 AEDRALLADELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFA  203 (296)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhh
Confidence            0111223344444443       47999999999999998877789999987

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.68  E-value=0.00015  Score=69.79  Aligned_cols=72  Identities=18%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecCceeEEEEEe
Q 010140           92 LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEASHYSCLVMEY  170 (517)
Q Consensus        92 LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~lV~E~  170 (517)
                      +..|-.+.+|+...       .++.+++|+........  . -...+|..+++.+..-. ..+++....    -++||||
T Consensus         4 ~~~G~tn~~y~~~~-------~~~~~vlR~~~~~~~~~--~-~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~   69 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-------PGISFVWRPQSPVCKAL--G-VDRQREYQILQALSALGLAPKPILVNE----HWLLVEW   69 (256)
T ss_pred             CCCcCcCCeEEEEe-------CCccEEEeeCCcccccc--c-CcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEe
Confidence            55688889998863       24568888865432110  0 12345888999885433 345554432    2699999


Q ss_pred             cCCCchh
Q 010140          171 CPGGDLY  177 (517)
Q Consensus       171 ~~gg~L~  177 (517)
                      ++|..+.
T Consensus        70 i~G~~~~   76 (256)
T TIGR02721        70 LEGEVIT   76 (256)
T ss_pred             ccCcccc
Confidence            9987653

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.66  E-value=0.00027  Score=69.85  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             EeeeeccceeEEEEEEEecCC-CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecCceeEE
Q 010140           89 LRRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEASHYSCL  166 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~l  166 (517)
                      ++.|..|-...||++...... ....++.|++|+.....    .......+|..++..+.... ..++++.+..    .+
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~----~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~   74 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV----ELLIDRERELVVFARLSERNLGPKLYGIFPN----GR   74 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC----cceechHHHHHHHHHHHhCCCCCceEEEeCC----Cc
Confidence            456677777899988754210 00124678999976532    11223445888888885333 4566666643    36


Q ss_pred             EEEecCCCchhH
Q 010140          167 VMEYCPGGDLYA  178 (517)
Q Consensus       167 V~E~~~gg~L~~  178 (517)
                      |+||++|..+..
T Consensus        75 v~e~i~G~~l~~   86 (302)
T cd05156          75 IEEFIPSRTLTT   86 (302)
T ss_pred             hhheeCCCcCCH
Confidence            899999877743

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.59  E-value=1e-05  Score=91.04  Aligned_cols=205  Identities=10%  Similarity=-0.007  Sum_probs=133.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH--HHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI--RKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+++.=-+|.|.++   ++++.+.    .-.-+.+|+.+.-....  +-..+....|+.-++...|+++...+.-...
T Consensus      1228 ~e~~EV~l~i~~~~~~---R~k~Lr~----kid~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~p 1300 (2724)
T KOG1826|consen 1228 MEHSEVNLGISNHFHF---RNKWLRS----KIDWFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPP 1300 (2724)
T ss_pred             hhhhheeeecccceee---ccchHhh----hhceeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCC
Confidence            4556665555555544   4444331    11235666665433321  1112233345556667789999887765543


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        +...|.+++||.+|++...+-+.....-+..+.- +                         .....+.+.+..-+|++
T Consensus      1301 s~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~-v-------------------------~~~~kvsvl~~~~~ls~ 1354 (2724)
T KOG1826|consen 1301 SESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSP-V-------------------------HLRHKVSVLNRNVILSL 1354 (2724)
T ss_pred             CCChHHHHHHHHHHHhHHHHHHHhccccCCcchhch-H-------------------------HHHHHHHHhccchhhhc
Confidence              4457899999999999998876432222211111 0                         01123437777777765


Q ss_pred             C-----ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          239 G-----IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       239 ~-----iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      .     .+|++||+-|.+|..+..+|++++|+.+....                                          
T Consensus      1355 tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp------------------------------------------ 1392 (2724)
T KOG1826|consen 1355 TNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNP------------------------------------------ 1392 (2724)
T ss_pred             ccCCccchhhhhhhhccceecCCcccccccccccccCc------------------------------------------
Confidence            2     78999999999999999999999999852111                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                          ........++++.|++|++...-.++.++|+|..|+.+|+...|
T Consensus      1393 ------------------------------------~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~ 1436 (2724)
T KOG1826|consen 1393 ------------------------------------VLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDG 1436 (2724)
T ss_pred             ------------------------------------hHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc
Confidence                                                01112345688899999999888888889999999999999988


Q ss_pred             CCCCC
Q 010140          394 TTPFK  398 (517)
Q Consensus       394 ~~Pf~  398 (517)
                      ..+|-
T Consensus      1437 n~~fi 1441 (2724)
T KOG1826|consen 1437 NAYFI 1441 (2724)
T ss_pred             cHHHH
Confidence            88874

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.58  E-value=0.00012  Score=70.60  Aligned_cols=135  Identities=19%  Similarity=0.256  Sum_probs=92.9

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH-----------------HH--hHHHHHHHHHHhc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-----------------KL--HRADMEKVILTML  146 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~-----------------~~--~~~~~E~~il~~l  146 (517)
                      +.++..||-|.-+.||.+-+..      +..+++|.-+-.....+.                 .+  -...+|...|+.|
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~------G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL  167 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEE------GNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKAL  167 (465)
T ss_pred             hhhccccccccccceEEEecCC------CCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHH
Confidence            5688999999999999998773      567788865422211110                 11  1244688888888


Q ss_pred             C-CC-CccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHH
Q 010140          147 D-HP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY  224 (517)
Q Consensus       147 ~-Hp-nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (517)
                      . |- -|.+.++    .+..|+|||++.|-.|.+.....        .+                            ..+
T Consensus       168 ~e~gfpVPkpiD----~~RH~Vvmelv~g~Pl~~v~~v~--------d~----------------------------~~l  207 (465)
T KOG2268|consen  168 YERGFPVPKPID----HNRHCVVMELVDGYPLRQVRHVE--------DP----------------------------PTL  207 (465)
T ss_pred             HHcCCCCCCccc----ccceeeHHHhhcccceeeeeecC--------Ch----------------------------HHH
Confidence            4 32 2445444    35678999999998886542211        11                            122


Q ss_pred             HHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       225 ~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      ...+..-+.-|-.+|+||+|..-=||+++.++.++++||--.
T Consensus       208 y~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  208 YDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDKIVVIDFPQM  249 (465)
T ss_pred             HHHHHHHHHHHHHcCceecccchheeEEecCCCEEEeechHh
Confidence            344555567788999999999999999999999999999754

>PRK10593 hypothetical protein; Provisional

Probab=97.58  E-value=0.00061  Score=67.11  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC---CCccceeeeeec-
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH---PFLPTLYAEFEA-  160 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H---pnIv~l~~~~~~-  160 (517)
                      ...-.+.||.|..+.||.....+       ..+.+|..+..     .....+..|...|+.|.-   -.|.++++++.. 
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~~~-------~~~~~k~~~~~-----~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~   82 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYDSQ-------GNPMPLMARSF-----STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHE   82 (297)
T ss_pred             hhheeeecCCccceeEEEEEcCC-------CCEEEEEeccc-----ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccC
Confidence            34456789999999999986543       24667775321     012355669999988843   367888887754 


Q ss_pred             --CceeEEEEEecCCCch
Q 010140          161 --SHYSCLVMEYCPGGDL  176 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L  176 (517)
                        .+..+||||+++|+++
T Consensus        83 ~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         83 QSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             CcCCCeEEEEeccCCEec
Confidence              3668999999998766

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.51  E-value=0.00041  Score=63.25  Aligned_cols=97  Identities=29%  Similarity=0.395  Sum_probs=70.9

Q ss_pred             HHHHHHhcCC-CCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchh
Q 010140          139 EKVILTMLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTL  217 (517)
Q Consensus       139 E~~il~~l~H-pnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (517)
                      |..+|+.+++ +++++++|++-.    ++|.||...+++....  .....+                          ...
T Consensus         9 E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~--~~l~~~--------------------------~~~   56 (188)
T PF12260_consen    9 EPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIY--RPLSQF--------------------------LQS   56 (188)
T ss_pred             HHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCccccccc--cccccc--------------------------ccc
Confidence            8888888876 699999999832    5799999777664220  000000                          001


Q ss_pred             hhh-hhHHHHHHHHHHHHHHh---cCceeccCCCCceEEccCCcEEeccCCCcc
Q 010140          218 FFN-YRFYAAETLLALEYLHM---MGIVYRDLKPENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       218 ~~~-~~~~~~qi~~aL~yLH~---~~iiHrDLKp~NILl~~~~~vkL~DFGls~  267 (517)
                      .|. ..+++.+++..+++|+.   ..+.-.|++|+|+.++.+|++|++|...+.
T Consensus        57 ~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   57 PWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcc
Confidence            111 13689999999999998   358889999999999999999999998763

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK05231 homoserine kinase; Provisional

Probab=97.46  E-value=0.0017  Score=64.70  Aligned_cols=29  Identities=31%  Similarity=0.405  Sum_probs=25.6

Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      .++||+|+.|.|||++.+...-|+||+.+
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~  215 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFA  215 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEecccc
Confidence            48999999999999986665689999987

>PLN02236 choline kinase

Probab=97.37  E-value=0.0042  Score=62.49  Aligned_cols=83  Identities=12%  Similarity=0.014  Sum_probs=51.5

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecCcee
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEASHYS  164 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~  164 (517)
                      ..-+..|-.|-.-.+|++....... ...+.|.+|+.....   ..... ...|..+++.+..-+ -.++++.+..+   
T Consensus        38 ~~~i~~l~gGlTN~~y~v~~~~~~~-~~~~~~v~Ri~g~~t---~~~id-R~~E~~~~~~l~~~gl~P~~~~~~~~g---  109 (344)
T PLN02236         38 ALQVIPLKGAMTNEVFQIKWPTKEG-NLGRKVLVRIYGEGV---ELFFD-RDDEIRTFECMSRHGQGPRLLGRFPNG---  109 (344)
T ss_pred             cEEEEEcCCcccceeEEEEeCCCCC-CCCCeEEEEEccCCC---Ceeec-hHHHHHHHHHHHHcCCCCceEEEECCc---
Confidence            3344456568888999987543111 134678899886542   11122 245888998885433 34667776543   


Q ss_pred             EEEEEecCCCchh
Q 010140          165 CLVMEYCPGGDLY  177 (517)
Q Consensus       165 ~lV~E~~~gg~L~  177 (517)
                       .|.||++|.+|.
T Consensus       110 -~v~efi~g~~l~  121 (344)
T PLN02236        110 -RVEEFIHARTLS  121 (344)
T ss_pred             -eEEEeeCCCCCC
Confidence             689999887764

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=97.22  E-value=0.0071  Score=59.94  Aligned_cols=28  Identities=25%  Similarity=0.538  Sum_probs=25.1

Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      .++||+|+.+.||+++. +.+.|+||+.+
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~  214 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC  214 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence            47999999999999987 67899999976

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.98  E-value=0.01  Score=57.66  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=24.8

Q ss_pred             CceeccCCCCceEEccCCc-EEeccCCCcc
Q 010140          239 GIVYRDLKPENVLVREDGH-IMLSDFDLSF  267 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~-vkL~DFGls~  267 (517)
                      .++|+|+.|.|||++.++. .-|+||+.+.
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~  215 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAK  215 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence            4899999999999997565 5699999874

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.93  E-value=0.005  Score=61.41  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=51.7

Q ss_pred             eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH----HHHHhHHHHHHHHHHhcC--CC-CccceeeeeecCce
Q 010140           91 RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI----RKKLHRADMEKVILTMLD--HP-FLPTLYAEFEASHY  163 (517)
Q Consensus        91 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~E~~il~~l~--Hp-nIv~l~~~~~~~~~  163 (517)
                      .||.|.-..||++....     .++.++||.-.......    .-...+...|..+|+...  -| .++++|.+  +...
T Consensus         2 EigdGnlN~VfrV~~~~-----g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~   74 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQE-----GDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEM   74 (370)
T ss_pred             cCCCCceEEEEEEEcCC-----CCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--cccc
Confidence            58999999999998643     22568888765332211    122455566888887763  34 45565543  4455


Q ss_pred             eEEEEEecCCC-chhHHH
Q 010140          164 SCLVMEYCPGG-DLYAAR  180 (517)
Q Consensus       164 ~~lV~E~~~gg-~L~~~l  180 (517)
                      ..+|||+++.. .|.+.+
T Consensus        75 ~~~vMEdL~~~~ilR~~L   92 (370)
T TIGR01767        75 AVTVMEDLSHHKIARKGL   92 (370)
T ss_pred             ceehHhhCccchHHHHHH
Confidence            66999999653 344444

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.90  E-value=0.00084  Score=68.52  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=61.2

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCC---CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          376 SAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT---FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       376 ~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~---~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +|+|||++|.++.++..|...+......+....+.+-...   .........-.+++...+.++..+|+-..|..||...
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence            4999999999999999999988877666655555432111   0000000112234445678999999999999999876


Q ss_pred             CChHHhhcCCCcCCC
Q 010140          453 KGSVEIKRHEFFKGI  467 (517)
Q Consensus       453 ~~~~ell~hp~f~~~  467 (517)
                          ++.+|+-|..+
T Consensus       190 ----~~~k~~i~~ev  200 (725)
T KOG1093|consen  190 ----ELSKRCSFTEV  200 (725)
T ss_pred             ----HHhcCccHHHH
Confidence                88999888754

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.90  E-value=0.0066  Score=60.77  Aligned_cols=82  Identities=10%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~  162 (517)
                      +..++. .|..|=...+|++...+...  ....|.+|+......    ..-...+|..+++.+..-++ .++++++..+ 
T Consensus        15 ~~i~i~-~l~gGlTN~~~~v~~~~~~~--~~~~~v~Ri~g~~t~----~~IdR~~E~~il~~l~~~gl~P~~l~~~~~G-   86 (330)
T PLN02421         15 SDFSVE-RISGGITNLLLKVSVKEENG--NEVSVTVRLFGPNTD----YVIDRERELQAIKYLSAAGFGAKLLGVFGNG-   86 (330)
T ss_pred             CceEEE-EeCCcccceEEEEEecCCCC--CCceEEEEEecCCcC----eEechHHHHHHHHHHHhcCCCCceeEEeCCc-
Confidence            345554 44448778899987543211  134788998754321    11122348889988865444 4667666432 


Q ss_pred             eeEEEEEecCCCch
Q 010140          163 YSCLVMEYCPGGDL  176 (517)
Q Consensus       163 ~~~lV~E~~~gg~L  176 (517)
                         +|.+|++|.+|
T Consensus        87 ---~i~~fi~g~~l   97 (330)
T PLN02421         87 ---MIQSFINARTL   97 (330)
T ss_pred             ---EeehhhcCCCC
Confidence               58999987765

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.75  E-value=0.012  Score=59.80  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH----HHHhHHHHHHHHHHhcC---CCCccceeeeeec
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR----KKLHRADMEKVILTMLD---HPFLPTLYAEFEA  160 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~----~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~  160 (517)
                      -.+.||.|.-..||++....       +.|+||.-........    ....+...|...|+.+.   ..++.+++.+.+ 
T Consensus        36 ~~~eiggGn~N~VyrV~~~~-------~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de-  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSSS-------GSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR-  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcCC-------ccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC-
Confidence            47789999999999987632       3588887652211000    12344445677776653   247888888776 


Q ss_pred             CceeEEEEEecCC
Q 010140          161 SHYSCLVMEYCPG  173 (517)
Q Consensus       161 ~~~~~lV~E~~~g  173 (517)
                       +..++|||++++
T Consensus       108 -d~~vlvME~L~~  119 (418)
T PLN02756        108 -TMALIGMRYLEP  119 (418)
T ss_pred             -CCCEEEEeecCC
Confidence             446789999977

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.36  E-value=0.05  Score=53.11  Aligned_cols=76  Identities=21%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC---CCCccceeeeeecCc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD---HPFLPTLYAEFEASH  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~~~  162 (517)
                      .+-.+.|+.|....+|+...       .++.|-||+-...      ....+..|..-|+.|.   --.+++.+.+....+
T Consensus        19 i~~~~~v~GG~i~~a~~~~~-------~~~~~FvK~~~~~------~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~   85 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLDT-------DGGSYFVKVNSES------GRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDD   85 (288)
T ss_dssp             --EEEEE--SSSSEEEEEET-------TS-EEEEEEEEGG------GCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SS
T ss_pred             eeeeEecCCCChhheEEEEC-------CCccEEEEecChh------hHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecC
Confidence            45667899999999999872       4578999987632      2345556888888873   445778899888777


Q ss_pred             eeEEEEEecCCC
Q 010140          163 YSCLVMEYCPGG  174 (517)
Q Consensus       163 ~~~lV~E~~~gg  174 (517)
                      ..||||||++.+
T Consensus        86 ~~fLlle~l~~~   97 (288)
T PF03881_consen   86 DAFLLLEFLEMG   97 (288)
T ss_dssp             CCEEEEE-----
T ss_pred             CceEEEEeecCC
Confidence            789999999776

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.34  E-value=0.015  Score=54.19  Aligned_cols=29  Identities=34%  Similarity=0.615  Sum_probs=20.9

Q ss_pred             CceeccCCCCceEE-ccCCcEEeccCCCcc
Q 010140          239 GIVYRDLKPENVLV-REDGHIMLSDFDLSF  267 (517)
Q Consensus       239 ~iiHrDLKp~NILl-~~~~~vkL~DFGls~  267 (517)
                      .++|.||.|.|||+ +.++.++|+||..|.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            58999999999999 888999999999874

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PTZ00384 choline kinase; Provisional

Probab=96.30  E-value=0.03  Score=57.06  Aligned_cols=86  Identities=15%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCC-CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC-Cccceeeeeec
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMV-GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP-FLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp-nIv~l~~~~~~  160 (517)
                      .++.++ +.|..|-...+|++....... ....+.|.+.+.....    ...-.-.+|..+++.+... .-.++++.|..
T Consensus        50 ~~~i~i-~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~----~l~IdR~~E~~i~~~Ls~~glgP~l~~~f~~  124 (383)
T PTZ00384         50 PEFIEI-KKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYN----SLVIDNDLQYNIAKLLGDNNFGPKIIGRFGD  124 (383)
T ss_pred             cccEEE-EEeCCcccceEEEEEecCCCCCccccceEEEEeccCCC----ceEeccHHHHHHHHHHHhCCCCCeEEEecCC
Confidence            344444 456568889999997543210 0011224444422110    1111223488999999644 44677777754


Q ss_pred             CceeEEEEEecCCCchh
Q 010140          161 SHYSCLVMEYCPGGDLY  177 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~  177 (517)
                          ++|.||++|-+|.
T Consensus       125 ----g~l~efIeGr~l~  137 (383)
T PTZ00384        125 ----FTIQEWVEGNTMG  137 (383)
T ss_pred             ----EEEEEEeccccCC
Confidence                5999999987764

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.09  E-value=0.01  Score=59.93  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=51.6

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH---HHHHhHHHHHHHHHHhcC--CC-CccceeeeeecC
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI---RKKLHRADMEKVILTMLD--HP-FLPTLYAEFEAS  161 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~~E~~il~~l~--Hp-nIv~l~~~~~~~  161 (517)
                      ..+.||.|.-..||++.+..     .++.++||.-.......   .-...|...|..+|+.+.  -| +++++|.+  +.
T Consensus        33 ~~~eigdGnlN~VfrV~~~~-----~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~--D~  105 (409)
T PRK12396         33 QCKEIGDGNLNYVFRVWDEQ-----KNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLF--DS  105 (409)
T ss_pred             eeeEcCCCceEEEEEEeeCC-----CCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEE--Cc
Confidence            37789999999999998742     23568888754322110   112456666888888763  34 46666643  45


Q ss_pred             ceeEEEEEecCC
Q 010140          162 HYSCLVMEYCPG  173 (517)
Q Consensus       162 ~~~~lV~E~~~g  173 (517)
                      ....+|||+++.
T Consensus       106 e~~~~vMEdL~~  117 (409)
T PRK12396        106 VMNCCVMEDLSD  117 (409)
T ss_pred             HHhhHHHHhCcc
Confidence            566799999965

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=95.98  E-value=0.094  Score=51.95  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=26.9

Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~  267 (517)
                      ++||+|+.+.|||++.++.+.++||..+.
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            79999999999999999999999999873

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=95.89  E-value=0.063  Score=52.88  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             HHHHHHhc--------CceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          231 ALEYLHMM--------GIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       231 aL~yLH~~--------~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      -..+|+.+        .++|+|+++.||+|+..+-+=+.||+++..
T Consensus       183 ~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~l  228 (321)
T COG3173         183 LIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATL  228 (321)
T ss_pred             HHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEecccccc
Confidence            35566654        489999999999999988899999999843

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.87  E-value=0.073  Score=52.93  Aligned_cols=42  Identities=40%  Similarity=0.529  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhc--------C--ceeccCCCCceEEccCCc-EEeccCCCc
Q 010140          225 AAETLLALEYLHMM--------G--IVYRDLKPENVLVREDGH-IMLSDFDLS  266 (517)
Q Consensus       225 ~~qi~~aL~yLH~~--------~--iiHrDLKp~NILl~~~~~-vkL~DFGls  266 (517)
                      ..++...++.+.+.        +  +||+|+.|.||+++.+.. +.++||+-+
T Consensus       174 ~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa  226 (331)
T COG2334         174 RAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDA  226 (331)
T ss_pred             HHHHHHHHHHHHhhchhhCCcccceeeecCCCccceeEcCCCCeeeEEEcccc
Confidence            34555555555543        3  999999999999998874 899999987

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=95.79  E-value=0.067  Score=53.02  Aligned_cols=143  Identities=24%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH----------------------HHHH-HhHHHHHHHHH
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA----------------------IRKK-LHRADMEKVIL  143 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~----------------------~~~~-~~~~~~E~~il  143 (517)
                      .+-..|..|--+.||.|...      .+..+|||+.+..-+.                      .+.. .--.+.|++-|
T Consensus       147 ~inGCiSTGKEANVYHat~~------dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNL  220 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEE------DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNL  220 (520)
T ss_pred             ecccccccCccceeEeeecC------CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHH
Confidence            35566788999999998765      4567999997532110                      0111 11234577888


Q ss_pred             HhcCCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhH
Q 010140          144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRF  223 (517)
Q Consensus       144 ~~l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (517)
                      ++++...|.----. .- ....|||+|+ |++=.-.   ...+..                          .+....++.
T Consensus       221 kRl~~aGIP~PePI-lL-k~hVLVM~Fl-Grdgw~a---PkLKd~--------------------------~ls~~ka~~  268 (520)
T KOG2270|consen  221 KRLNNAGIPCPEPI-LL-KNHVLVMEFL-GRDGWAA---PKLKDA--------------------------SLSTSKARE  268 (520)
T ss_pred             HHHHhcCCCCCCce-ee-ecceEeeeec-cCCCCcC---cccccc--------------------------cCChHHHHH
Confidence            88865554321111 11 2346999999 4332110   000111                          111122334


Q ss_pred             HHHHHHHHHHHH-HhcCceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          224 YAAETLLALEYL-HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       224 ~~~qi~~aL~yL-H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      +-.|++.-+.-| |..++||.||.-=|+|+ .+|.+.|+|-+-+-.
T Consensus       269 ~Y~~~v~~MR~lY~~c~LVHADLSEfN~Ly-hdG~lyiIDVSQSVE  313 (520)
T KOG2270|consen  269 LYQQCVRIMRRLYQKCRLVHADLSEFNLLY-HDGKLYIIDVSQSVE  313 (520)
T ss_pred             HHHHHHHHHHHHHHHhceeccchhhhhheE-ECCEEEEEEcccccc
Confidence            556666666665 45689999999999998 578899999987743

>PTZ00296 choline kinase; Provisional

Probab=95.26  E-value=0.18  Score=52.37  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=53.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCC---CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMV---GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEF  158 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~---~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~  158 (517)
                      .++. -++.|..|=.-.+|++.......   ...++.|.+++.-....    .+-....|..+++.+..-+| .++++.+
T Consensus       105 ~~~I-~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te----~lIdR~~E~~v~~~ls~~gi~P~l~~~f  179 (442)
T PTZ00296        105 EDDV-RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVD----ELYNPISEFEVYKTMSKYRIAPQLLNTF  179 (442)
T ss_pred             cccE-EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCcc----ceeCHHHHHHHHHHHHHCCCCCceEEEe
Confidence            3455 66777778888999997653211   11246788998755421    11122348888888864444 3666666


Q ss_pred             ecCceeEEEEEecCCCchh
Q 010140          159 EASHYSCLVMEYCPGGDLY  177 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~  177 (517)
                      ..    +.|.||++|.+|.
T Consensus       180 ~g----g~I~efi~g~~l~  194 (442)
T PTZ00296        180 SG----GRIEEWLYGDPLR  194 (442)
T ss_pred             CC----CEEEEeeCCccCC
Confidence            42    4689999987553

>PRK06148 hypothetical protein; Provisional

Probab=95.25  E-value=0.16  Score=58.54  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.7

Q ss_pred             cCceeccCCCCceEEccCC--cEE-eccCCCcc
Q 010140          238 MGIVYRDLKPENVLVREDG--HIM-LSDFDLSF  267 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~--~vk-L~DFGls~  267 (517)
                      +++||.|+.+.|||++.++  ++. |+|||-+.
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            4799999999999999775  555 99999864

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=95.12  E-value=0.13  Score=50.40  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             eccceeEEEEEEEec--C-CCCCCCceeeeeecchHHHH--HHHHHhHHHHHHHHHHhcC-------------CCCccce
Q 010140           93 GSGDIGNVYLCQIRN--P-MVGLPQCFYAMKVVDREALA--IRKKLHRADMEKVILTMLD-------------HPFLPTL  154 (517)
Q Consensus        93 G~G~fG~Vy~~~~~~--~-~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~-------------HpnIv~l  154 (517)
                      |.|-.|.+|+++...  . ........+.||........  .......+.+|+.+.+.+-             ...+.++
T Consensus         2 Gd~y~s~~~rv~v~~~~~~~~~~~~~s~ivK~~p~~~~~~~~~~~~~~f~~E~~fY~~~~p~l~~~~~~~~~~~~~~P~~   81 (294)
T PF02958_consen    2 GDNYLSDMYRVTVTYELKGDGKNEPLSLIVKSPPTNPSRREFLREMGSFRREIFFYRELLPELEELQKEAGDPFKFFPKC   81 (294)
T ss_pred             CCcceeEEEEEEEEEEEccCCCceEEEEEEEeCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccceeeceE
Confidence            778889999987754  1 12224567899998733221  1223456777887665441             1245666


Q ss_pred             eeeeecCceeEEEEEecC
Q 010140          155 YAEFEASHYSCLVMEYCP  172 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~  172 (517)
                      +..-.+....+||||-+.
T Consensus        82 ~~~~~~~~~~~lvlEDL~   99 (294)
T PF02958_consen   82 YYADEDPGDEVLVLEDLS   99 (294)
T ss_pred             EEeccCCCceeeehhhhh
Confidence            666655557899999763

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.06  E-value=0.29  Score=45.50  Aligned_cols=80  Identities=25%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeeecC
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFEAS  161 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~~~  161 (517)
                      +.+-.+.+.-|.--..|...+.       ...|-+|+-...      ....+..|+.-|..|   +--+|.+++.+....
T Consensus        17 ~i~er~~v~gG~inea~~v~dg-------~~~~FvK~n~~~------~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~   83 (286)
T COG3001          17 EIKEREEVSGGDINEAWRLRDG-------TDPFFVKCNQRE------QLSMFTAEADGLELLARSNTITVPKVIAVGASR   83 (286)
T ss_pred             hhhcccccCCccccceeEeecC-------CcceEEEecchh------hHHHHHHHHHHHHHHHhcCCccccceEEecCCC
Confidence            3344455666666666666543       356788876543      344555677666666   345678888898999


Q ss_pred             ceeEEEEEecCCCchh
Q 010140          162 HYSCLVMEYCPGGDLY  177 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~  177 (517)
                      ++.||||||++-|.+.
T Consensus        84 ~~sylVle~L~~~~~d   99 (286)
T COG3001          84 DHSYLVLEYLPTGPLD   99 (286)
T ss_pred             CeeEEEEeeccCCCCC
Confidence            9999999999987664

>PRK11768 serine/threonine protein kinase; Provisional

Probab=94.97  E-value=0.3  Score=48.76  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      .++||+|+.+.|||++ + .+.|+||+-+
T Consensus       196 ~~liHgD~h~~NvL~~-d-~~~iIDFDd~  222 (325)
T PRK11768        196 LLRLHGDCHPGNILWR-D-GPHFVDLDDA  222 (325)
T ss_pred             ccceecCCCchhcccc-C-CcEEEeCCCC
Confidence            4789999999999995 4 5789999987

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.39  E-value=0.08  Score=52.40  Aligned_cols=43  Identities=28%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhc-CceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          225 AAETLLALEYLHMM-GIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       225 ~~qi~~aL~yLH~~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      +.+.+.-++-+..+ ..=|||+...||||+ +|+|.|+||-+++.
T Consensus       327 f~s~~sil~~lekkf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         327 FWSCISILDILEKKFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             HHHHHHHHhhhhhcCCcccccccccceeee-cCceEEEEeeeeec
Confidence            34544444444433 588999999999999 99999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		4e-23
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		9e-23
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		2e-22
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-22
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		4e-22
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		4e-22
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-21
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		7e-21
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		7e-21
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		1e-20
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		1e-20
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		1e-20
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		1e-20
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		1e-20
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		2e-20
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		2e-20
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		4e-20
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		5e-20
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		9e-20
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		1e-19
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		1e-19
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-19
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-19
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		1e-19
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-19
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		3e-19
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		6e-19
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		1e-17
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		3e-17
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		3e-17
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		4e-17
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		5e-17
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		6e-17
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		6e-17
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		7e-17
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		7e-17
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		7e-17
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		7e-17
4ae6_A	343	Structure And Function Of The Human Sperm-specific		8e-17
4ae9_A	343	Structure And Function Of The Human Sperm-specific		8e-17
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		8e-17
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		8e-17
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		8e-17
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		8e-17
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		8e-17
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		8e-17
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		8e-17
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		8e-17
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		8e-17
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		8e-17
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		8e-17
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		9e-17
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-17
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		9e-17
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-17
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		9e-17
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		9e-17
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		9e-17
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		9e-17
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		9e-17
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		9e-17
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		9e-17
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		9e-17
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		9e-17
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		9e-17
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		9e-17
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		9e-17
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		9e-17
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		1e-16
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-16
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		1e-16
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-16
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-16
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		1e-16
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		1e-16
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		1e-16
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-16
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-16
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-16
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		4e-16
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		4e-16
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		4e-16
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		4e-16
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		5e-16
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		6e-16
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		6e-16
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		7e-16
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		7e-16
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		9e-16
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		1e-14
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-14
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-14
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		2e-14
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		3e-14
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		4e-14
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		4e-14
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		4e-14
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		4e-14
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		5e-14
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		5e-14
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		6e-14
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		6e-14
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-14
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		6e-14
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		7e-14
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-14
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-14
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		7e-14
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-14
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-14
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		7e-14
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-14
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		7e-14
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-14
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-14
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		8e-14
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		9e-14
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-13
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-13
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-12
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		2e-12
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		2e-12
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		2e-12
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		2e-12
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-12
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		6e-12
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-12
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		7e-12
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		7e-12
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		7e-12
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		7e-12
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		7e-12
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		7e-12
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		7e-12
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		7e-12
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-12
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		7e-12
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		8e-12
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		8e-12
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		9e-12
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		9e-12
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-12
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-11
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		1e-11
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-11
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-11
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-11
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-11
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-11
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-11
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		1e-11
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-11
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-11
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-11
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		1e-11
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		2e-11
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-11
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		4e-11
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		4e-11
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		4e-11
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-11
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		5e-11
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		6e-11
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-10
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		1e-10
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		1e-10
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		2e-10
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-10
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		2e-10
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-10
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		2e-10
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		2e-10
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		2e-10
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		3e-10
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		3e-10
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		3e-10
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		3e-10
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		3e-10
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		3e-10
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		3e-10
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		3e-10
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		3e-10
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		4e-10
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		6e-10
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		7e-10
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		7e-10
3soa_A	444	Full-Length Human Camkii Length = 444		8e-10
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		9e-10
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		1e-09
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		2e-09
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		3e-09
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		3e-09
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		3e-09
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-09
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-09
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		4e-09
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-09
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		5e-09
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-09
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		9e-09
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-08
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-08
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		1e-08
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		6e-04
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-08
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		1e-08
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-08
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		1e-08
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		1e-08
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		1e-08
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		2e-08
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		1e-06
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		2e-08
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		2e-08
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		3e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		3e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		3e-08
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-08
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		1e-06
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		4e-08
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		4e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		4e-08
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-08
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		5e-08
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		5e-08
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		5e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		5e-08
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-08
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		5e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		5e-08
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		6e-08
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-08
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		6e-08
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		7e-08
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		8e-08
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-08
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		8e-08
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		8e-08
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		9e-08
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		4e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-07
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		2e-07
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-07
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-07
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		2e-07
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		3e-07
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		3e-07
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-07
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		3e-07
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-07
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		5e-07
4fie_A	423	Full-Length Human Pak4 Length = 423		5e-07
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		5e-07
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		5e-07
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		5e-07
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		5e-07
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		5e-07
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		5e-07
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-06
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		5e-07
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		6e-07
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-07
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		6e-07
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		6e-07
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		6e-07
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		7e-07
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		7e-07
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		8e-07
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		9e-07
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		9e-07
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		1e-06
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		1e-06
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		1e-06
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		1e-06
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		1e-06
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		1e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		1e-06
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		1e-06
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-06
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-06
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		3e-06
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		3e-06
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		3e-06
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		3e-06
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		4e-06
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		4e-06
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		4e-06
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-06
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-06
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-06
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		6e-06
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		6e-06
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		6e-06
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		7e-06
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		7e-06
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		8e-06
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		8e-06
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		9e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-05
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		1e-05
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		1e-05
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		1e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		1e-05
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		2e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		3e-05
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		3e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		3e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		3e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		3e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		3e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		3e-05
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		3e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		3e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		3e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		4e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		4e-05
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		4e-05
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		5e-05
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		5e-05
4exu_A	371	Mapk13, Inactive Form Length = 371		6e-05
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		6e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		6e-05
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		6e-05
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		8e-05
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		1e-04
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		1e-04
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		1e-04
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		1e-04
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		1e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-04
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		1e-04
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		1e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		2e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		2e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		2e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		2e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		2e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		2e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		2e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		2e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		2e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		2e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-04
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		3e-04
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		3e-04
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		3e-04
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		3e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		3e-04
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		3e-04
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		3e-04
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		3e-04
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		3e-04
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		3e-04
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		3e-04
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		3e-04
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		3e-04
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		3e-04
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		3e-04
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		4e-04
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		4e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		4e-04
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		5e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		5e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		5e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		5e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		5e-04
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		8e-04
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-04
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		8e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		8e-04
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		8e-04

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 14/147 (9%)
Query: 340 LDDPEVVAEPINARSK--SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  +  E I+   K  SF GT EY+APEV++ QGH  + DWW+ GV ++EML G+ PF
Sbjct: 171 LTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPF 230
Query: 398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSV 456
           +G++ ++T+  ILK  L  P+   + +         Q L+  L  +NP  R+GS   G+ 
Sbjct: 231 QGKDRKETMTLILKAKLGMPQFLSTEA---------QSLLRALFKRNPANRLGSGPDGAE 281
Query: 457 EIKRHEFFKGINWALI--RSIKPPEVP 481
           EIKRH F+  I+W  +  R IKPP  P
Sbjct: 282 EIKRHVFYSTIDWNKLYRREIKPPFKP 308

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 328 EQVDGDHHDQELLDDPEVVAEPIN--ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGV 385
           E +  +H     L D  +  E I+    + +F GT EY+APE++   GH  AVDWW+LG 
Sbjct: 150 ENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGA 209
Query: 386 FLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP 445
            +Y+ML G  PF GEN +KT+  ILK  L  P      ++         DL+ KLL +N 
Sbjct: 210 LMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEAR---------DLLKKLLKRNA 260
Query: 446 KKRIGSLKGSV-EIKRHEFFKGINWA--LIRSIKPPEVP 481
             R+G+  G   E++ H FF+ INW   L R ++PP  P
Sbjct: 261 ASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKP 299

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 328 EQVDGDHHDQELLDDPEVVAEPIN--ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGV 385
           E +  +H     L D  +  E I+    +  F GT EY+APE++   GH  AVDWW+LG 
Sbjct: 150 ENIMLNHQGHVKLTDFGLCKESIHDGTVTHXFCGTIEYMAPEILMRSGHNRAVDWWSLGA 209
Query: 386 FLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP 445
            +Y+ML G  PF GEN +KT+  ILK  L  P      ++         DL+ KLL +N 
Sbjct: 210 LMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEAR---------DLLKKLLKRNA 260
Query: 446 KKRIGSLKGSV-EIKRHEFFKGINWA--LIRSIKPPEVP 481
             R+G+  G   E++ H FF+ INW   L R ++PP  P
Sbjct: 261 ASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKP 299

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 340 LDDPEVVAEPINARSK--SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  +  E I+   K  SF GT EY+APEV++ +GH  + DWW+ GV ++EML GT PF
Sbjct: 167 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226
Query: 398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSV 456
           +G++ ++T+  ILK  L  P+     +         Q L+  L  +NP  R+G+   G  
Sbjct: 227 QGKDRKETMTMILKAKLGMPQFLSPEA---------QSLLRMLFKRNPANRLGAGPDGVE 277
Query: 457 EIKRHEFFKGINWALI--RSIKPPEVP 481
           EIKRH FF  I+W  +  R I PP  P
Sbjct: 278 EIKRHSFFSTIDWNKLYRREIHPPFKP 304

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 340 LDDPEVVAEPINARSK--SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  +  E I+   K  SF GT EY+APEV++ +GH  + DWW+ GV ++EML GT PF
Sbjct: 168 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 227
Query: 398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSV 456
           +G++ ++T+  ILK  L  P+     +         Q L+  L  +NP  R+G+   G  
Sbjct: 228 QGKDRKETMTMILKAKLGMPQFLSPEA---------QSLLRMLFKRNPANRLGAGPDGVE 278
Query: 457 EIKRHEFFKGINWALI--RSIKPPEVP 481
           EIKRH FF  I+W  +  R I PP  P
Sbjct: 279 EIKRHSFFSTIDWNKLYRREIHPPFKP 305

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 340 LDDPEVVAEPINARSK--SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  +  E I+   K  SF GT EY+APEV++ +GH  + DWW+ GV ++EML GT PF
Sbjct: 167 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226
Query: 398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSV 456
           +G++ ++T+  ILK  L  P+     +         Q L+  L  +NP  R+G+   G  
Sbjct: 227 QGKDRKETMTMILKAKLGMPQFLSPEA---------QSLLRMLFKRNPANRLGAGPDGVE 277
Query: 457 EIKRHEFFKGINWALI--RSIKPPEVP 481
           EIKRH FF  I+W  +  R I PP  P
Sbjct: 278 EIKRHSFFSTIDWNKLYRREIHPPFKP 304

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           N+ + +F GT EYLAPEV+  Q +   VDWW LG  LYEMLYG  PF   N  +   NIL
Sbjct: 193 NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 252
Query: 411 KKPLTF-PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
            KPL   P I  S+          + L+  LL K+  KR+G+    +EIK H FF  INW
Sbjct: 253 NKPLQLKPNITNSA----------RHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINW 302
Query: 470 --ALIRSIKPPEVPN----NDL 485
              + + I PP  PN    NDL
Sbjct: 303 DDLINKKITPPFNPNVSGPNDL 324

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF+GE+ ++   +I++  
Sbjct: 178 TKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN 237
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI 472
           + +P+   S SKE   + K       L+ K+P KR+G   +G  +IK H FF+ I+W  +
Sbjct: 238 VAYPK---SMSKEAVAICK------GLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL 288
Query: 473 --RSIKPPEVP 481
             + I+PP  P
Sbjct: 289 ERKEIQPPYKP 299

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF+GE+ ++   +I++  
Sbjct: 499 TKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN 558
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI 472
           + +P+   S SKE   + K       L+ K+P KR+G   +G  +IK H FF+ I+W  +
Sbjct: 559 VAYPK---SMSKEAVAICK------GLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL 609
Query: 473 --RSIKPPEVP 481
             + I+PP  P
Sbjct: 610 ERKEIQPPYKP 620

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 164 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 223
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW 469
            + + FPR     +K          L+S LL K+PK+R+ G  + + EI +H FF GI W
Sbjct: 224 MEEIRFPRTLGPEAK---------SLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 274
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 275 QHVYEKKLSPPFKPQ 289

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 165 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW 469
            + + FPR     +K          L+S LL K+PK+R+ G  + + EI +H FF GI W
Sbjct: 225 MEEIRFPRTLGPEAK---------SLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 275
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 276 QHVYEKKLSPPFKPQ 290

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 163 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW 469
            + + FPR     +K          L+S LL K+PK+R+ G  + + EI +H FF GI W
Sbjct: 223 MEEIRFPRTLGPEAK---------SLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 273
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 274 QHVYEKKLSPPFKPQ 288

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 303 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 362
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW 469
            + + FPR     +K          L+S LL K+PK+R+ G  + + EI +H FF GI W
Sbjct: 363 MEEIRFPRTLGPEAK---------SLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 413
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 414 QHVYEKKLSPPFKPQ 428

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 306 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 365
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSLKGSVEIKRHEFFKGINW 469
            + + FPR     +K          L+S LL K+PK+R+ G  + + EI +H FF GI W
Sbjct: 366 MEEIRFPRTLGPEAK---------SLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 416
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 417 QHVYEKKLSPPFKPQ 431

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           ++ F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF GE+ ++   +I++  
Sbjct: 177 TREFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHN 236
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI 472
           +++P+   S SKE   + K       L+ K+P KR+G   +G  +++ H FF+ I+W  +
Sbjct: 237 VSYPK---SLSKEAVSICK------GLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKL 287
Query: 473 --RSIKPPEVP 481
             R I+PP  P
Sbjct: 288 ENREIQPPFKP 298

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 17/142 (11%)
Query: 344 EVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF--KG 399
           E VA+    R+  F GT EY+AP+++ G   GH  AVDWW+LGV +YE+L G +PF   G
Sbjct: 208 EFVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 266
Query: 400 ENNEKTLIN--ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSV 456
           E N +  I+  ILK    +P       +E   + K  DLI +LL+K+PKKR+G   + + 
Sbjct: 267 EKNSQAEISRRILKSEPPYP-------QEMSALAK--DLIQRLLMKDPKKRLGCGPRDAD 317
Query: 457 EIKRHEFFKGINWALIRSIKPP 478
           EIK H FF+ INW  + + K P
Sbjct: 318 EIKEHLFFQKINWDDLAAKKVP 339

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 14/133 (10%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +A++  F GT +Y+APE++ GQ +  +VDWW+ GV LYEML G +PF G++ E+   +I 
Sbjct: 173 DAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 232
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
                +PR     +K         DL+ KL V+ P+KR+G ++G  +I++H  F+ INW 
Sbjct: 233 MDNPFYPRWLEKEAK---------DLLVKLFVREPEKRLG-VRG--DIRQHPLFREINWE 280
Query: 471 LI--RSIKPPEVP 481
            +  + I PP  P
Sbjct: 281 ELERKEIDPPFRP 293

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 14/133 (10%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +A++  F GT +Y+APE++ GQ +  +VDWW+ GV LYEML G +PF G++ E+   +I 
Sbjct: 172 DAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 231
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
                +PR     +K         DL+ KL V+ P+KR+G ++G  +I++H  F+ INW 
Sbjct: 232 MDNPFYPRWLEKEAK---------DLLVKLFVREPEKRLG-VRG--DIRQHPLFREINWE 279
Query: 471 LI--RSIKPPEVP 481
            +  + I PP  P
Sbjct: 280 ELERKEIDPPFRP 292

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 162 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 221
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 222 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 272
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 273 QDVVQKKLLPPFKPQ 287

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 164 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 223
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 224 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 274
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 275 QDVVQKKLLPPFKPQ 289

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR     +K          L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPRTLSPEAKS---------LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 333 DHHDQELLDDPEVVAEPI--NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM 390
           DH     L D  +  E I     + +F GT +Y+APE++    +G AVDWW +GV LYEM
Sbjct: 158 DHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEM 217
Query: 391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           L G  PF+ EN +     IL   + +P      +           ++   + KNP  R+G
Sbjct: 218 LCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDAT---------GILKSFMTKNPTMRLG 268
Query: 451 SLK--GSVEIKRHEFFKGINWALI--RSIKPPEVP 481
           SL   G   I RH FFK I+WA +  R I+PP  P
Sbjct: 269 SLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRP 303

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 12/126 (9%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT +Y+APEV+S + +  ++DWW+ G+ +YEML G TPF   N  KT   IL   L FP 
Sbjct: 165 GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP 224
Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWA--LIRSI 475
                   F E VK  DL+S+L+ ++  +R+G+L+ G+ ++K H +FK + W   L R+I
Sbjct: 225 F-------FNEDVK--DLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNI 275
Query: 476 KPPEVP 481
           + P  P
Sbjct: 276 ETPYEP 281

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 22/142 (15%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--------GENNEKT 405
           +  F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 178 TSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 237
Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHE 462
           L   IL+K +  PR   S S      VK   ++   L K+PK+R+G L   G  +I+ H 
Sbjct: 238 LFQVILEKQIRIPR---SMS------VKAASVLKSFLNKDPKERLGCLPQTGFADIQGHP 288
Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ ++W ++  + + PP  PN
Sbjct: 289 FFRNVDWDMMEQKQVVPPFKPN 310

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 15/139 (10%)
Query: 351 NARSKSFVGTHEYLAPEVI----SGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             +S   VGT +Y++PE++     G G +G   DWW+LGV +YEMLYG TPF  E+  +T
Sbjct: 230 TVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET 289
Query: 406 LINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
              I+  ++   FP      S+E       +DLI +L+    ++R+G   G  + K+H F
Sbjct: 290 YGKIMNHEERFQFPSHVTDVSEE------AKDLIQRLICSR-ERRLGQ-NGIEDFKKHAF 341
Query: 464 FKGINWALIRSIKPPEVPN 482
           F+G+NW  IR+++ P +P+
Sbjct: 342 FEGLNWENIRNLEAPYIPD 360

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 15/139 (10%)
Query: 351 NARSKSFVGTHEYLAPEVI----SGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             +S   VGT +Y++PE++     G G +G   DWW+LGV +YEMLYG TPF  E+  +T
Sbjct: 246 TVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET 305
Query: 406 LINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
              I+  ++   FP      S+E       +DLI +L+    ++R+G   G  + K+H F
Sbjct: 306 YGKIMNHEERFQFPSHVTDVSEE------AKDLIQRLICSR-ERRLGQ-NGIEDFKKHAF 357
Query: 464 FKGINWALIRSIKPPEVPN 482
           F+G+NW  IR+++ P +P+
Sbjct: 358 FEGLNWENIRNLEAPYIPD 376

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 22/142 (15%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--------GENNEKT 405
           + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 210 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 269
Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRHE 462
           L   IL+K +  PR   S S      VK   ++   L K+PK+R+G     G  +I+ H 
Sbjct: 270 LFQVILEKQIRIPR---SLS------VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHP 320
Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ ++W ++  + + PP  PN
Sbjct: 321 FFRNVDWDMMEQKQVVPPFKPN 342

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+ +  GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+ +  GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 174 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 233
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 234 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA 284
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 285 TTDWIAIYQRKVEAPFIP 302

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 12/139 (8%)
Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           +A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   + 
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFF 464
              I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F
Sbjct: 247 YEKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297
Query: 465 KGINWALI--RSIKPPEVP 481
              +W  I  R ++ P +P
Sbjct: 298 ATTDWIAIYQRKVEAPFIP 316

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 12/139 (8%)
Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           +A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   + 
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFF 464
              I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F
Sbjct: 247 YEKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297
Query: 465 KGINWALI--RSIKPPEVP 481
              +W  I  R ++ P +P
Sbjct: 298 ATTDWIAIYQRKVEAPFIP 316

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--------GENNEKT 405
           +  F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 163 TSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 222
Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRHE 462
           L   IL+K +  PR   S S      VK   ++   L K+PK+R+G     G  +I+ H 
Sbjct: 223 LFQVILEKQIRIPR---SLS------VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHP 273
Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ ++W ++  + + PP  PN
Sbjct: 274 FFRNVDWDMMEQKQVVPPFKPN 295

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 241 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 291
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 292 TTDWIAIYQRKVEAPFIP 309

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 241 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 291
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 292 TTDWIAIYQRKVEAPFIP 309

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK--------GENNEKT 405
           +  F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF          +N E  
Sbjct: 167 TSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 226
Query: 406 LIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRHE 462
           L   IL+K +  PR   S S      VK   ++   L K+PK+R+G     G  +I+ H 
Sbjct: 227 LFQVILEKQIRIPR---SLS------VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHP 277
Query: 463 FFKGINWALI--RSIKPPEVPN 482
           FF+ ++W ++  + + PP  PN
Sbjct: 278 FFRNVDWDMMEQKQVVPPFKPN 299

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 175 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 234
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 235 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 285
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 286 TTDWIAIYQRKVEAPFIP 303

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 183 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 242
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 243 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 293
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 294 TTDWIAIYQRKVEAPFIP 311

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 269 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 319
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 320 TTDWIAIYQRKVEAPFIP 337

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 269 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 319
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 320 TTDWIAIYQRKVEAPFIP 337

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +Y+M  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +   + +  GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 209 AKRVKGATWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 269 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 319
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 320 TTDWIAIYQRKVEAPFIP 337

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +I  H++F 
Sbjct: 249 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIXNHKWFA 299
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 300 TTDWIAIYQRKVEAPFIP 317

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 346 VAEPINARSKSFVGTHEYLAPEVI----SGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGE 400
           + E    +S   VGT +Y++PE++     G+G +G   DWW+LGV +YEMLYG TPF  E
Sbjct: 225 LMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE 284
Query: 401 NNEKTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI 458
           +  +T   I+  K+   FP      S+        +DLI +L+    + R+G   G  + 
Sbjct: 285 SLVETYGKIMNHKERFQFPTQVTDVSE------NAKDLIRRLICSR-EHRLGQ-NGIEDF 336
Query: 459 KRHEFFKGINWALIRSIKPPEVP 481
           K+H FF GI+W  IR+ + P +P
Sbjct: 337 KKHPFFSGIDWDNIRNCEAPYIP 359

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAP +I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+L   V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLPNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT EYLAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  K  G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKAFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 352 ARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
            R  + VGT +Y++PEV+  QG    +G   DWW++GVFLYEML G TPF  ++   T  
Sbjct: 229 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 288
Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            I+  K  LTFP      SKE       ++LI   L  + + R+G   G  EIKRH FFK
Sbjct: 289 KIMNHKNSLTFPDDN-DISKE------AKNLICAFLT-DREVRLGR-NGVEEIKRHLFFK 339
Query: 466 GINWAL--IRSIKPPEVPN 482
              WA   +R    P VP+
Sbjct: 340 NDQWAWETLRDTVAPVVPD 358

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 352 ARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
            R  + VGT +Y++PEV+  QG    +G   DWW++GVFLYEML G TPF  ++   T  
Sbjct: 224 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 283
Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            I+  K  LTFP      SKE       ++LI   L  + + R+G   G  EIKRH FFK
Sbjct: 284 KIMNHKNSLTFPDDN-DISKE------AKNLICAFLT-DREVRLGR-NGVEEIKRHLFFK 334
Query: 466 GINWAL--IRSIKPPEVPN 482
              WA   +R    P VP+
Sbjct: 335 NDQWAWETLRDTVAPVVPD 353

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 352 ARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
            R  + VGT +Y++PEV+  QG    +G   DWW++GVFLYEML G TPF  ++   T  
Sbjct: 229 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 288
Query: 408 NIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            I+  K  LTFP      SKE       ++LI   L  + + R+G   G  EIKRH FFK
Sbjct: 289 KIMNHKNSLTFPDDN-DISKE------AKNLICAFLT-DREVRLGR-NGVEEIKRHLFFK 339
Query: 466 GINWAL--IRSIKPPEVPN 482
              WA   +R    P VP+
Sbjct: 340 NDQWAWETLRDTVAPVVPD 358

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+    GT E LAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             I+   + FP    S          L+DL+  LL  +  KR G+LK  V +IK H++F 
Sbjct: 248 EKIVSGKVRFPSHFSSD---------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 466 GINWALI--RSIKPPEVP 481
             +W  I  R ++ P +P
Sbjct: 299 TTDWIAIYQRKVEAPFIP 316

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+ SFVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+ SFVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 186 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 245
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 246 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 296
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 297 SVTWENLHQQTPPKL 311

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+ SFVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 182 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 241
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 242 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 292
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 293 SVTWENLHQQTPPKL 307

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 17/141 (12%)
Query: 351 NARSKSFVGTHEYLAPEVISG-------QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
             RS   VGT +YL+PE++           +G   DWW LGVF YEM YG TPF  ++  
Sbjct: 217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA 276
Query: 404 KTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
           +T   I+  K+ L+ P +     +E       +D I +LL   P+ R+G   G+ + + H
Sbjct: 277 ETYGKIVHYKEHLSLPLVDEGVPEE------ARDFIQRLLCP-PETRLGR-GGAGDFRTH 328
Query: 462 EFFKGINWALIRSIKPPEVPN 482
            FF G++W  +R   PP  P+
Sbjct: 329 PFFFGLDWDGLRDSVPPFTPD 349

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 358 VGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL--K 411
           VGT +Y++PEV+  QG    +G   DWW++GVFL+EML G TPF  ++   T   I+  K
Sbjct: 236 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHK 295
Query: 412 KPLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG--IN 468
             L FP        E  E+ K  ++LI   L  + + R+G   G  EIK+H FFK    N
Sbjct: 296 NSLCFP--------EDAEISKHAKNLICAFLT-DREVRLGR-NGVEEIKQHPFFKNDQWN 345
Query: 469 WALIRSIKPPEVP 481
           W  IR    P VP
Sbjct: 346 WDNIRETAAPVVP 358

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFA 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+ +FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 183 ESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 242
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 243 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 293
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 294 SVTWENLHQQTPPKL 308

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFA 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
           DH    + D    V  P     K  VGT  Y+APEV+  + +  + DWW LG  LYEM+ 
Sbjct: 321 DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380
Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQ--DLISKLLVKNPKKRIG 450
           G +PF  +  +K +     K     R+     +E+ E    Q   L S+LL K+P +R+G
Sbjct: 381 GQSPF--QQRKKKI-----KREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLG 433
Query: 451 SLKGSV-EIKRHEFFKGINWALIRS--IKPPEVPN-NDLYCK 488
              GS  E+K H  FK +N+  + +  ++PP  P+   +YCK
Sbjct: 434 CRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCK 475

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 190 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 249
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 250 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 300
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 301 SVTWENLHQQTPPKL 315

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 17/151 (11%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
             ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF+       N++  
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFFK 465
             +L++ +T+P     +SK+F E          LL K+P+KR+G   GS + ++ H  F+
Sbjct: 403 QRVLEQAVTYPDKFSPASKDFCEA---------LLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 466 GINWALIRS--IKPPEVPNN-DLYCKIKKKV 493
            I+W  + +  + PP VP++  +Y K  + V
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAKCIQDV 484

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
           DH    + D    V  P     K  VGT  Y+APEV+  + +  + DWW LG  LYEM+ 
Sbjct: 321 DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380
Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQ--DLISKLLVKNPKKRIG 450
           G +PF  +  +K +     K     R+     +E+ E    Q   L S+LL K+P +R+G
Sbjct: 381 GQSPF--QQRKKKI-----KREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLG 433
Query: 451 SLKGSV-EIKRHEFFKGINWALIRS--IKPPEVPN-NDLYCK 488
              GS  E+K H  FK +N+  + +  ++PP  P+   +YCK
Sbjct: 434 CRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCK 475

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 242
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 243 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 293
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 294 SVTWENLHQQTPPKL 308

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 182 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 241
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 242 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 292
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 293 SVTWENLHQQTPPKL 307

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 167 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 226
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 227 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 277
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 278 SVTWENLHQQTPPKL 292

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 242
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 243 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 293
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 294 SVTWENLHQQTPPKL 308

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 242
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 243 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 293
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 294 SVTWENLHQQTPPKL 308

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 161 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 220
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 221 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 271
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 272 SVTWENLHQQTPPKL 286

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
             ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF+       N++  
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFFK 465
             +L++ +T+P     +SK+F E          LL K+P+KR+G   GS + ++ H  F+
Sbjct: 403 QRVLEQAVTYPDKFSPASKDFCEA---------LLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 466 GINWALIRS--IKPPEVPNN 483
            I+W  + +  + PP VP++
Sbjct: 454 DISWRQLEAGMLTPPFVPDS 473

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 160 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 219
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 220 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 270
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 271 SVTWENLHQQTPPKL 285

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 186 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 245
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 246 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 296
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 297 SVTWENLHQQTPPKL 311

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 163 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 222
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 223 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 273
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 274 SVTWENLHQQTPPKL 288

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 244
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 245 KIIKLEYDFPE------KFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 296 SVTWENLHQQTPPKL 310

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
             ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF+       N++  
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFFK 465
             +L++ +T+P     +SK+F E          LL K+P+KR+G   GS + ++ H  F+
Sbjct: 403 QRVLEQAVTYPDKFSPASKDFCEA---------LLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 466 GINWALIRS--IKPPEVPNN 483
            I+W  + +  + PP VP++
Sbjct: 454 DISWRQLEAGMLTPPFVPDS 473

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
             ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF+       N++  
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE-IKRHEFFK 465
             +L++ +T+P     +SK+F E          LL K+P+KR+G   GS + ++ H  F+
Sbjct: 403 QRVLEQAVTYPDKFSPASKDFCEA---------LLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 466 GINWALIRS--IKPPEVPNN 483
            I+W  + +  + PP VP++
Sbjct: 454 DISWRQLEAGMLTPPFVPDS 473

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 188 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 247
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP              K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 248 KIIKLEYDFPAAFFP---------KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 298
Query: 466 GINWALIRSIKPPEV 480
            + W  +    PP++
Sbjct: 299 SVTWENLHQQTPPKL 313

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           E   AR+  FVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N      
Sbjct: 162 ESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 221
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG--SLKGSVEIKRHEFFK 465
            I+K    FP       K F    K +DL+ KLLV +  KR+G   ++G   +K H FF+
Sbjct: 222 KIIKLEYDFP------EKFFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 272
Query: 466 GINWALIRSIKPPE 479
            + W  +    PP+
Sbjct: 273 SVTWENLHQQTPPK 286

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K+  GT +YL PE+I G+ H   VD W +GV  YE+L G  PF+  ++ +T   I+K 
Sbjct: 177 RRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVKV 236
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            L FP    + +         QDLISKLL  NP +R+
Sbjct: 237 DLKFPASVPTGA---------QDLISKLLRHNPSERL 264

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 326 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385
Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+ ++  K    I +  LT   + V     F    +L+ L+  LL ++  +R+G 
Sbjct: 386 RGHSPFR-QHKTKDKHEIDRMTLT---MAVELPDSFSP--ELRSLLEGLLQRDVNRRLGC 439
Query: 452 L-KGSVEIKRHEFFKGINWALI--RSIKPPEVP 481
           L +G+ E+K   FF+ ++W ++  +   PP +P
Sbjct: 440 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIP 472

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 325 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 384
Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+ ++  K    I +  LT   + V     F    +L+ L+  LL ++  +R+G 
Sbjct: 385 RGHSPFR-QHKTKDKHEIDRMTLT---MAVELPDSFSP--ELRSLLEGLLQRDVNRRLGC 438
Query: 452 L-KGSVEIKRHEFFKGINWALI--RSIKPPEVP 481
           L +G+ E+K   FF+ ++W ++  +   PP +P
Sbjct: 439 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIP 471

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 326 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385
Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+ ++  K    I +  LT   + V     F    +L+ L+  LL ++  +R+G 
Sbjct: 386 RGHSPFR-QHKTKDKHEIDRMTLT---MAVELPDSFSP--ELRSLLEGLLQRDVNRRLGC 439
Query: 452 L-KGSVEIKRHEFFKGINWALI--RSIKPPEVP 481
           L +G+ E+K   FF+ ++W ++  +   PP +P
Sbjct: 440 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIP 472

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 326 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385
Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+ ++  K    I +  LT   + V     F    +L+ L+  LL ++  +R+G 
Sbjct: 386 RGHSPFR-QHKTKDKHEIDRMTLT---MAVELPDSFSP--ELRSLLEGLLQRDVNRRLGC 439
Query: 452 L-KGSVEIKRHEFFKGINWALI--RSIKPPEVP 481
           L +G+ E+K   FF+ ++W ++  +   PP +P
Sbjct: 440 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIP 472

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +  +GT EYLAPE+++     +A D W +G+  Y +L  T+PF GE+N++T +NI     
Sbjct: 191 REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNI----- 245
Query: 415 TFPRIGVSSSKE-FEEVVKL-QDLISKLLVKNPKKR 448
              ++ V  S+E F  V +L  D I  LLVKNP+KR
Sbjct: 246 --SQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKR 279

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 157 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 216
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 217 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 245

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 161 SSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 221 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 249

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 159 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 218
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 219 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 247

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 165 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 225 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 253

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 165 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 225 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 253

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 177 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 236
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 237 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 265

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 186 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 246 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 274

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 162 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 222 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 250

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 164 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 223
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 224 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 252

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF GE  ++TL NI     
Sbjct: 169 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY 228
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR 473
            F     S++ E       +D I +LLVK+PK+R+ ++  S+E   H + K I    +R
Sbjct: 229 DFDEEYFSNTSEL-----AKDFIRRLLVKDPKRRM-TIAQSLE---HSWIKAIRRRNVR 278

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 165 SSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 225 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 253

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 186 SSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 246 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 274

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 161 SSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 221 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 249

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 162 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 222 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 250

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 161 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 221 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 249

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 165 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 225 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 253

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    + T   I 
Sbjct: 160 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDTYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 163 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 223 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 251

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 165 SSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 225 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 253

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 160 SSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +   TFP      ++         DLIS+LL  NP +R
Sbjct: 220 RVEFTFPDFVTEGAR---------DLISRLLKHNPSQR 248

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF GE  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++ E       +D I +LLVK+PK+R+
Sbjct: 236 DFDEEYFSNTSEL-----AKDFIRRLLVKDPKRRM 265

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF GE  ++TL NI     
Sbjct: 190 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY 249
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++ E       +D I +LLVK+PK+R+
Sbjct: 250 DFDEEYFSNTSEL-----AKDFIRRLLVKDPKRRM 279

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 164 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           +   TFP      ++         DLIS+LL  N  +R+
Sbjct: 224 RVEFTFPDFVTEGAR---------DLISRLLKHNASQRL 253

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T   I 
Sbjct: 164 SSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           +   TFP      ++         DLIS+LL  N  +R+
Sbjct: 224 RVEFTFPDFVTEGAR---------DLISRLLKHNASQRL 253

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R +   GT +YL PE+I G+ H   VD W  GV  YE L G  PF   ++ +T   I+  
Sbjct: 168 RRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV 227
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE 457
            L FP      SK         DLISKLL  +P +R+  LKG +E
Sbjct: 228 DLKFPPFLSDGSK---------DLISKLLRYHPPQRL-PLKGVME 262

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R +   GT +YL PE+I G+ H   VD W  GV  YE L G  PF   ++ +T   I+  
Sbjct: 169 RRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV 228
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE 457
            L FP      SK         DLISKLL  +P +R+  LKG +E
Sbjct: 229 DLKFPPFLSDGSK---------DLISKLLRYHPPQRL-PLKGVME 263

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           V  DHF +LR +G G  G V + Q  +      +  YAMK ++++    R ++     E 
Sbjct: 12  VNFDHFEILRAIGKGSFGKVCIVQKNDT-----KKMYAMKYMNKQKCVERNEVRNVFKEL 66
Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXX 200
            I+  L+HPFL  L+  F+      +V++   GGDL    Q+     F   + K      
Sbjct: 67  QIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ--NVHFKEETVKLFI--- 121
Query: 201 XXXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIML 260
                        ++ +  +Y                  I++RD+KP+N+L+ E GH+ +
Sbjct: 122 ------------CELVMALDY-------------LQNQRIIHRDMKPDNILLDEHGHVHI 156
Query: 261 SDFDLS 266
           +DF+++
Sbjct: 157 TDFNIA 162

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 21/159 (13%)
Query: 333 DHHDQELLDDPEVVAE-PINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLY 388
           D H    + D  + A  P   +  +  GT  Y+APE+ S   G G+  AVDWW+LGV  Y
Sbjct: 149 DEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAY 208
Query: 389 EMLYGTTPF--KGENNEKTLINILKKP-LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP 445
           E+L G  P+  +   + K +++  +   +T+P      S   +E+V    L+ KLL  NP
Sbjct: 209 ELLRGRRPYHIRSSTSSKEIVHTFETTVVTYP------SAWSQEMVS---LLKKLLEPNP 259
Query: 446 KKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPPEVPN 482
            +R   L    +++   +   INW  +  + + P  +PN
Sbjct: 260 DQRFSQLS---DVQNFPYMNDINWDAVFQKRLIPGFIPN 295

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSQTSEL-----AKDFIRKLLVKETRKRL 265

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSQTSELA-----KDFIRKLLVKETRKRL 265

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSQTSELA-----KDFIRKLLVKETRKRL 265

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSHTSELA-----KDFIRKLLVKETRKRL 265

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSHTSELA-----KDFIRKLLVKETRKRL 265

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY 235
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S + E       +D I KLLVK  +KR+
Sbjct: 236 DFDEEFFSHTSELA-----KDFIRKLLVKETRKRL 265

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 174 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 233
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 234 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 263

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 174 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 233
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 234 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 263

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRM 264

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  +    I      
Sbjct: 165 GFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYD 224
Query: 416 FPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           FP      S E++ V  + +DLI+K+L  NP KRI
Sbjct: 225 FP------SPEWDTVTPEAKDLINKMLTINPAKRI 253

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  +    I      F
Sbjct: 166 FAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDF 225
Query: 417 PRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           P      S E++ V  + +DLI+K+L  NP KRI
Sbjct: 226 P------SPEWDTVTPEAKDLINKMLTINPAKRI 253

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  +    I      
Sbjct: 183 GFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYD 242
Query: 416 FPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           FP      S E++ V  + +DLI+K+L  NP KRI
Sbjct: 243 FP------SPEWDTVTPEAKDLINKMLTINPSKRI 271

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  +    I      
Sbjct: 172 GFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYD 231
Query: 416 FPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           FP      S E++ V  + +DLI+K+L  NP KRI
Sbjct: 232 FP------SPEWDTVTPEAKDLINKMLTINPSKRI 260

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            F GT  YL+PEV+  + +G  VD W  GV LY +L G  PF  E+  K    I      
Sbjct: 165 GFAGTPGYLSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYD 224
Query: 416 FPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           FP      S E++ V  + ++LI+++L  NP KRI
Sbjct: 225 FP------SPEWDTVTPEAKNLINQMLTINPAKRI 253

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT  ++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F     S++         +D I +LLVK+PKKR+
Sbjct: 235 EFEDEYFSNTSALA-----KDFIRRLLVKDPKKRM 264

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K+  GT  Y+APEV+  +GH   VD W+LG  LY +L G  PF+    ++T I I K 
Sbjct: 198 RKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 413 PLTFPR 418
             + PR
Sbjct: 258 EYSVPR 263

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           ++ VGT  Y++P+V+ G  +G   D W+ GV +Y +L G  PF    + + ++ I +   
Sbjct: 166 RTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTF 224
Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           TFP    + VS   E         LI +LL K+PK+RI SL+       HE+F+
Sbjct: 225 TFPEKDWLNVSPQAE--------SLIRRLLTKSPKQRITSLQAL----EHEWFE 266

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K    T E+ APE++  +  G   D W +GV  Y +L G +PF GE++ +TL N+ +   
Sbjct: 208 KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW 267
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS 474
            F     SS        + +D I  LL K P+KR+ ++  ++E   H + KG +  L   
Sbjct: 268 EFDEDAFSSVSP-----EAKDFIKNLLQKEPRKRL-TVHDALE---HPWLKGDHSNLTSR 318
Query: 475 IKPPEVPNNDLYCKIKKK 492
           I  P    N +  KIK+K
Sbjct: 319 I--PSSRYNKIRQKIKEK 334

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           ++ VGT  Y++P+V+ G  +G   D W+ GV +Y +L G  PF    + + ++ I +   
Sbjct: 183 RTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTF 241
Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           TFP    + VS   E         LI +LL K+PK+RI SL+       HE+F+
Sbjct: 242 TFPEKDWLNVSPQAE--------SLIRRLLTKSPKQRITSLQAL----EHEWFE 283

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+  +GH   VD W+LG  LY +L G  PF+    ++T I I K 
Sbjct: 198 RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 413 PLTFPR 418
             + PR
Sbjct: 258 EYSVPR 263

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  K    I      
Sbjct: 192 GFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYD 251
Query: 416 FPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGS 451
           FP      S E++ V  + ++LI+++L  NP KRI +
Sbjct: 252 FP------SPEWDTVTPEAKNLINQMLTINPAKRITA 282

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+  +GH   VD W+LG  LY +L G  PF+    ++T I I K 
Sbjct: 198 RKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 413 PLTFPR 418
             + PR
Sbjct: 258 EYSVPR 263

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+  +GH   VD W+LG  LY +L G  PF+    ++T I I K 
Sbjct: 182 RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 241
Query: 413 PLTFPR 418
             + PR
Sbjct: 242 EYSVPR 247

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K   GT E+ APEV  G+  G   D W++GV  Y +L G +PF GEN+++TL N+     
Sbjct: 314 KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW 373
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                  S   E       +D I KLL+ +P  R+
Sbjct: 374 NMDDSAFSGISE-----DGKDFIRKLLLADPNTRM 403

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K   GT E+ APEV  G+  G   D W++GV  Y +L G +PF GEN+++TL N+     
Sbjct: 208 KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW 267
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                  S   E       +D I KLL+ +P  R+
Sbjct: 268 NMDDSAFSGISE-----DGKDFIRKLLLADPNTRM 297

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 362 EYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGV 421
           EY APEV       +A D W+LG  +Y +L G  PF  E N++ + NI+    TF     
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTF----- 222
Query: 422 SSSKEFEEV-VKLQDLISKLLVKNPKKRIGS 451
              + F+E+ ++  D + +LLVK  K R+ +
Sbjct: 223 -DEEAFKEISIEAMDFVDRLLVKERKSRMTA 252

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K+  GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 177 RKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 236
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 237 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 263

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K+  GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 173 RKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 232
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 233 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 259

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 70/261 (26%)
Query: 74  LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-- 131
           +R+ +G++G  +F++ R+LGSG  G V LC+ +N          A+KV+ +      +  
Sbjct: 27  VRKKEGKIGESYFKV-RKLGSGAYGEVLLCKEKNG-----HSEKAIKVIKKSQFDKGRYS 80
Query: 132 -------KLHRADMEKV-ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQ 183
                  K H     ++ +L  LDHP +  L+  FE   Y  LV E+  GG+L+     Q
Sbjct: 81  DDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELF----EQ 136
Query: 184 PGKRFGISSAKXXXXXXXXXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYR 243
              R                        H                           IV+R
Sbjct: 137 IINRHKFDECDAANIMKQILSGICYLHKHN--------------------------IVHR 170
Query: 244 DLKPENVLVREDG---HIMLSDFDLS--FKCD------------VVPKLLRPKLSFEAIE 286
           D+KPEN+L+       +I + DF LS  F  D            + P++L+ K +     
Sbjct: 171 DIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYN----- 225
Query: 287 KYEKCSIPSCATPMQPVLSCF 307
             EKC + SC   M  +L  +
Sbjct: 226 --EKCDVWSCGVIMYILLCGY 244

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           +GT  Y+APEV+  + +    D W+ GV +Y +L G  PF G+N++  +  + K    F 
Sbjct: 209 LGTAYYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFD 267
Query: 418 RIGVSS-SKEFEEVVKL 433
                + S E +E++KL
Sbjct: 268 FNDWKNISDEAKELIKL 284

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K+  GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 173 RKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 232
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 233 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 259

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG----EN 401
           A  ++++ KS VGT  Y+APEV+  + + G   D W+ GV LY ML G  PF+     +N
Sbjct: 166 ASVLHSQPKSAVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKN 225
Query: 402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
             KT+  IL      P   V  S E       + LIS++ V +P KRI       EI+ H
Sbjct: 226 FRKTIHRILNVQYAIPDY-VHISPE------CRHLISRIFVADPAKRI----SIPEIRNH 274
Query: 462 EFF 464
           E+F
Sbjct: 275 EWF 277

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT E+LAPEV++        D W++GV  Y +L G +PF G+N+ +TL NIL        
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDL-- 307
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGS 451
                 +EF+++  + ++ ISKLL+K    RI +
Sbjct: 308 ----EDEEFQDISEEAKEFISKLLIKEKSWRISA 337

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG----ENNEK 404
           ++++ KS VGT  Y+APEV+  + + G   D W+ GV LY ML G  PF+     +N  K
Sbjct: 169 LHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRK 228
Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           T+  IL      P   V  S E       + LIS++ V +P KRI       EI+ HE+F
Sbjct: 229 TIHRILNVQYAIPDY-VHISPE------CRHLISRIFVADPAKRI----SIPEIRNHEWF 277

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG----ENNEK 404
           ++++ KS VGT  Y+APEV+  + + G   D W+ GV LY ML G  PF+     +N  K
Sbjct: 169 LHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRK 228
Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           T+  IL      P   V  S E       + LIS++ V +P KRI       EI+ HE+F
Sbjct: 229 TIHRILNVQYAIPDY-VHISPE------CRHLISRIFVADPAKRI----SIPEIRNHEWF 277

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG----ENNEK 404
           ++++ KS VGT  Y+APEV+  + + G   D W+ GV LY ML G  PF+     +N  K
Sbjct: 168 LHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRK 227
Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           T+  IL      P   V  S E       + LIS++ V +P KRI       EI+ HE+F
Sbjct: 228 TIHRILNVQYAIPDY-VHISPE------CRHLISRIFVADPAKRI----SIPEIRNHEWF 276

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 92/244 (37%), Gaps = 65/244 (26%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D ++ +++LGSG  G V LC  ++ + G  +   A+K++ + ++           E  +L
Sbjct: 4   DRYQRVKKLGSGAYGEVLLC--KDKLTGAER---AIKIIKKSSVTTTSNSGALLDEVAVL 58
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA---RQRQPGKRFGISSAKXXXXXX 200
             LDHP +  LY  FE      LVME   GG+L+     RQ+                  
Sbjct: 59  KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK------------------ 100
Query: 201 XXXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVRE---DGH 257
                        D  +                  H   IV+RDLKPEN+L+     D  
Sbjct: 101 ---------FSEVDAAVIMK------QVLSGTTYLHKHNIVHRDLKPENLLLESKSRDAL 145
Query: 258 IMLSDFDLSFKCDV--------------VPKLLRPKLSFEAIEKYEKCSIPSCATPMQPV 303
           I + DF LS   +V               P++LR K         EKC + SC   +  +
Sbjct: 146 IKIVDFGLSAHFEVGGKMKERLGTAYYIAPEVLRKKYD-------EKCDVWSCGVILYIL 198
Query: 304 LSCF 307
           L  +
Sbjct: 199 LCGY 202

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           +  + K  +GT  Y+APEV+  + +    D W+ GV LY +L G  PF G+ +++ L  +
Sbjct: 159 VGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRV 217
Query: 410 LKKPLTF-PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            K   +F P      S E +++VKL      +L   P KRI +
Sbjct: 218 EKGKFSFDPPDWTQVSDEAKQLVKL------MLTYEPSKRISA 254

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 195 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 254
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 255 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 281

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 230
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 231 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 257

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K   GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K 
Sbjct: 197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 256
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             + P       K    V     LI K+L  +P  R
Sbjct: 257 EYSIP-------KHINPVA--ASLIQKMLQTDPTAR 283

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I      +
Sbjct: 166 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 225
Query: 417 PRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGS 451
           P      S E++ V  + + LI  +L  NPKKRI +
Sbjct: 226 P------SPEWDTVTPEAKSLIDSMLTVNPKKRITA 255

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I      +
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 417 PRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGS 451
           P      S E++ V  + + LI  +L  NPKKRI +
Sbjct: 227 P------SPEWDTVTPEAKSLIDSMLTVNPKKRITA 256

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 92/244 (37%), Gaps = 65/244 (26%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D ++ +++LGSG  G V LC  ++ + G  +   A+K++ + ++           E  +L
Sbjct: 21  DRYQRVKKLGSGAYGEVLLC--KDKLTGAER---AIKIIKKSSVTTTSNSGALLDEVAVL 75
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKXXXXXX 200
             LDHP +  LY  FE      LVME   GG+L+     RQ+                  
Sbjct: 76  KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK------------------ 117
Query: 201 XXXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVRE---DGH 257
                        D  +                  H   IV+RDLKPEN+L+     D  
Sbjct: 118 ---------FSEVDAAVIMK------QVLSGTTYLHKHNIVHRDLKPENLLLESKSRDAL 162
Query: 258 IMLSDFDLSFKCDV--------------VPKLLRPKLSFEAIEKYEKCSIPSCATPMQPV 303
           I + DF LS   +V               P++LR K         EKC + SC   +  +
Sbjct: 163 IKIVDFGLSAHFEVGGKMKERLGTAYYIAPEVLRKKYD-------EKCDVWSCGVILYIL 215
Query: 304 LSCF 307
           L  +
Sbjct: 216 LCGY 219

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           +  + K  +GT  Y+APEV+  + +    D W+ GV LY +L G  PF G+ +++ L  +
Sbjct: 176 VGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRV 234
Query: 410 LKKPLTF-PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            K   +F P      S E +++VKL      +L   P KRI +
Sbjct: 235 EKGKFSFDPPDWTQVSDEAKQLVKL------MLTYEPSKRISA 271

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I      +
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 417 PRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGS 451
           P      S E++ V  + + LI  +L  NPKKRI +
Sbjct: 227 P------SPEWDTVTPEAKSLIDSMLTVNPKKRITA 256

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG----ENNEK 404
           ++++ K  VGT  Y+APEV+  + + G   D W+ GV LY ML G  PF+     +N  K
Sbjct: 169 LHSQPKDTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRK 228
Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           T+  IL      P   V  S E       + LIS++ V +P KRI       EI+ HE+F
Sbjct: 229 TIHRILNVQYAIPDY-VHISPE------CRHLISRIFVADPAKRI----SIPEIRNHEWF 277

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I      +
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 249
Query: 417 PRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRI 449
           P      S E++ V  + + LI  +L  NPKKRI
Sbjct: 250 P------SPEWDTVTPEAKSLIDSMLTVNPKKRI 277

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 231 RIP---------FYMSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 231 RIP---------FYMSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    ILK    F  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEF-- 237
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKR 448
                S  ++++    +D I  L+ K+P+KR
Sbjct: 238 ----DSPYWDDISDSAKDFIRHLMEKDPEKR 264

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    ILK    F  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEF-- 237
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKR 448
                S  ++++    +D I  L+ K+P+KR
Sbjct: 238 ----DSPYWDDISDSAKDFIRHLMEKDPEKR 264

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    ILK    F  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEF-- 237
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKR 448
                S  ++++    +D I  L+ K+P+KR
Sbjct: 238 ----DSPYWDDISDSAKDFIRHLMEKDPEKR 264

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 231 RIP---------FYMSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI-NILKKP 413
           K+  GT  Y APE++ G  +G  VD W++G+  Y +L G  PF  E  ++ +   IL   
Sbjct: 208 KTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCE 267
Query: 414 LTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKG 454
             F       S  ++EV +  +DL+ KL+V +PKKR+ + + 
Sbjct: 268 YYF------ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQA 303

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    ILK    F  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEF-- 237
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKR 448
                S  ++++    +D I  L+ K+P+KR
Sbjct: 238 ----DSPYWDDISDSAKDFIRHLMEKDPEKR 264

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    ILK    F  
Sbjct: 184 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF-- 241
Query: 419 IGVSSSKEFEEVV-KLQDLISKLLVKNPKKR 448
                S  ++++    +D I  L+ K+P KR
Sbjct: 242 ----DSPYWDDISDSAKDFIRNLMEKDPNKR 268

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G   Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 231 RIP---------FYXSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 164 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 223
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 224 RIP---------FYMSTDCENLLKKFLILNPSKR-GTLE 252

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P   
Sbjct: 165 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIGS 224
Query: 400 ENNEKTLINIL-----KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            +    +  +L     + P   P  GV S       ++ QD ++K L+KNP +R
Sbjct: 225 GSGSMAIFELLDYIVNEPPPKLPS-GVFS-------LEFQDFVNKCLIKNPAER 270

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 357 FVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+    
Sbjct: 172 FCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 231
Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
            P         F      ++L+ K L+ NP KR G+L+
Sbjct: 232 IP---------FYMSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +F G   Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    +L+   
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
             P         F      ++L+ K L+ NP KR G+L+
Sbjct: 231 RIP---------FYMSTDCENLLKKFLILNPSKR-GTLE 259

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +  +  +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    
Sbjct: 163 VGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRER 222
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
           +L+     P         F      ++L+ + LV NP KR G+L+
Sbjct: 223 VLRGKYRIP---------FYMSTDCENLLKRFLVLNPIKR-GTLE 257

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 355 KSFVGTHEYLAPEVISGQ------GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +S  GT  YLAPE+I         G+G  VD W+ GV +Y +L G+ PF        L  
Sbjct: 181 RSVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRM 240
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I+     F   G     ++ + VK  DL+S+ LV  P+KR      + E   H FF+
Sbjct: 241 IMSGNYQF---GSPEWDDYSDTVK--DLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 58/245 (23%)
Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
           QG +  D F   R+LGSG  G+V+L + R+   GL +    +K ++++   +  +   A+
Sbjct: 17  QGTID-DLFIFKRKLGSGAFGDVHLVEERSS--GLERV---IKTINKDRSQVPMEQIEAE 70
Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXX 197
           +E  +L  LDHP +  ++  FE  H   +VME C GG+L             I SA+   
Sbjct: 71  IE--VLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLER----------IVSAQARG 118
Query: 198 XXXXXXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVRED-- 255
                           +   +F                H   +V++DLKPEN+L ++   
Sbjct: 119 KALSEGYVAELMKQMMNALAYF----------------HSQHVVHKDLKPENILFQDTSP 162
Query: 256 -GHIMLSDFDLS--FKCD------------VVPKLLRPKLSFEAIEKYEKCSIPSCATPM 300
              I + DF L+  FK D            + P++ +  ++F       KC I S    M
Sbjct: 163 HSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTF-------KCDIWSAGVVM 215
Query: 301 QPVLS 305
             +L+
Sbjct: 216 YFLLT 220

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +  S +  GT  Y+APEV   +      D W+ GV +Y +L G  PF G + E+     +
Sbjct: 180 DEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE-----V 233
Query: 411 KKPLTF--PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           ++  T+  P   V       + V   DL+ ++L K+P++R      + ++  HE+FK
Sbjct: 234 QQKATYKEPNYAVECRPLTPQAV---DLLKQMLTKDPERR----PSAAQVLHHEWFK 283

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +  +  +F G   Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    
Sbjct: 166 VGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRER 225
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK 453
           +L+     P         F      ++L+ + LV NP KR G+L+
Sbjct: 226 VLRGKYRIP---------FYMSTDCENLLKRFLVLNPIKR-GTLE 260

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 359 GTHEYLAPEVI--SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           GT  ++APEV+  + + +G   D W+ GV L+ +L G  PF G N+  T+  +L K L F
Sbjct: 236 GTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCF 295
Query: 417 --PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG 454
             P   V S          +DL+S LL +N  +R  +++ 
Sbjct: 296 ENPNYNVLSPLA-------RDLLSNLLNRNVDERFDAMRA 328

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 169 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 227
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 228 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GSAK---ELIQHQFL 274
Query: 465 K 465
           K
Sbjct: 275 K 275

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 226
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 227 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR-GSAK---ELLQHQFL 273
Query: 465 K 465
           K
Sbjct: 274 K 274

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           ++++ KS VGT  Y+APEV+  Q + G   D W+ GV LY ML G  PF+     +    
Sbjct: 170 LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRK 229
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            +++ L+   +  S   +     +   LIS++ V +P  RI       EIK H +F
Sbjct: 230 TIQRILS---VKYSIPDDIRISPECCHLISRIFVADPATRI----SIPEIKTHSWF 278

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 355 KSFVGTHEYLAPEVISGQ------GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +   GT  YLAPE+I         G+G  VD W+ GV +Y +L G+ PF        L  
Sbjct: 181 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRM 240
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I+     F   G     ++ + VK  DL+S+ LV  P+KR      + E   H FF+
Sbjct: 241 IMSGNYQF---GSPEWDDYSDTVK--DLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 355 KSFVGTHEYLAPEVISGQ------GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +   GT  YLAPE+I         G+G  VD W+ GV +Y +L G+ PF        L  
Sbjct: 168 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRM 227
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           I+     F   G     ++ + VK  DL+S+ LV  P+KR
Sbjct: 228 IMSGNYQF---GSPEWDDYSDTVK--DLVSRFLVVQPQKR 262

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++    VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 168 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 226
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 227 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GSAK---ELLQHQFL 273
Query: 465 K 465
           K
Sbjct: 274 K 274

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++    VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 169 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 227
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 228 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GSAK---ELIQHQFL 274
Query: 465 K 465
           K
Sbjct: 275 K 275

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++    VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 168 PEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY- 226
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKL----QDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                     I  + + E +   KL    +D +++ L  + +KR GS K   E+ +H+F 
Sbjct: 227 ---------LIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR-GSAK---ELLQHQFL 273
Query: 465 K 465
           K
Sbjct: 274 K 274

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 181 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 239
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 240 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 282

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 303 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 361
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 362 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 404

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 183 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 241
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 242 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 284

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 172 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 230
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 231 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P N   K+   T  Y APE+++  G+  + D W+LGV LY ML G  PF+  +   T  +
Sbjct: 161 PDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS 220
Query: 409 ILKKPLTFPRIGVSSSKEFEEVV--KLQDLISKLLVKNPKKRI 449
            ++      +   S   E  + V  + +DLI  LL  +P KR+
Sbjct: 221 AVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL 263

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 226 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 284
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 285 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 327

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRI 419
           T  ++APEV+  QG+ +A D W+LGV LY ML G TPF     + T   IL + +   + 
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPF-ANGPDDTPEEILAR-IGSGKF 240
Query: 420 GVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            +S           +DL+SK+L  +P +R+
Sbjct: 241 SLSGGYWNSVSDTAKDLVSKMLHVDPHQRL 270

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D ++  R LG G  G V LC  ++ + G  +C  A+KV+ +  +  +        E  +L
Sbjct: 26  DRYKGQRVLGKGSFGEVILC--KDKITG-QEC--AVKVISKRQVKQKTDKESLLREVQLL 80
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFG-ISSAKXXXXXXXX 202
             LDHP +  LY  FE   Y  LV E   GG+L+   +    KRF  + +A+        
Sbjct: 81  KQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFD--EIISRKRFSEVDAARIIRQ---- 134
Query: 203 XXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVR---EDGHIM 259
                       V     Y              H   IV+RDLKPEN+L+    +D +I 
Sbjct: 135 ------------VLSGITYX-------------HKNKIVHRDLKPENLLLESKSKDANIR 169
Query: 260 LSDFDLS 266
           + DF LS
Sbjct: 170 IIDFGLS 176

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + K 
Sbjct: 184 KXKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKG 242
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             TF    +   K+  E  K  DLI K L   P  RI +
Sbjct: 243 KYTFE---LPQWKKVSESAK--DLIRKXLTYVPSXRISA 276

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           R K  VGT  ++APE+IS   +G  VD W+LG+ + EM+ G  P+  E   K +  +++ 
Sbjct: 176 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 234
Query: 413 PLTFPRIGVSSSKEFEEVV-KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            L  PR+     K   +V   L+  + +LLV++P +R      + E+ +H F 
Sbjct: 235 NLP-PRL-----KNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 277

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           + + K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + 
Sbjct: 188 SKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVE 246
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
           K   TF    +   K+  E  K  DLI K+L   P  RI +
Sbjct: 247 KGKYTFE---LPQWKKVSESAK--DLIRKMLTYVPSMRISA 282

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + K 
Sbjct: 184 KMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKG 242
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             TF    +   K+  E  K  DLI K+L   P  RI +
Sbjct: 243 KYTFE---LPQWKKVSESAK--DLIRKMLTYVPSMRISA 276

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  VGT  ++APEVIS   + + VD W+LG+ + EM+ G  P+  ++     +  +K+
Sbjct: 197 KRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP----VQAMKR 252
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               P   + +S +   V  L+D + ++LV++P++R
Sbjct: 253 LRDSPPPKLKNSHKVSPV--LRDFLERMLVRDPQER 286

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG---ENNEKTLINILKKPLTF 416
           T  ++APEV+  QG+    D W+LG+ LY ML G TPF     +  E+ L  I     T 
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 417 PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                ++  E       +DL+SK+L  +P +R+
Sbjct: 248 SGGNWNTVSE-----TAKDLVSKMLHVDPHQRL 275

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG---ENNEKTLINILKKPLTF 416
           T  ++APEV+  QG+    D W+LG+ LY ML G TPF     +  E+ L  I     T 
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 417 PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                ++  E       +DL+SK+L  +P +R+
Sbjct: 248 SGGNWNTVSE-----TAKDLVSKMLHVDPHQRL 275

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + K 
Sbjct: 207 KMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKG 265
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             TF    +   K+  E  K  DLI K+L   P  RI +
Sbjct: 266 KYTFE---LPQWKKVSESAK--DLIRKMLTYVPSMRISA 299

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           +  GT  Y++PE+ +   HG   D W+LG   Y +L G  PF  +  + TL  ++     
Sbjct: 171 TLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYE 230
Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            P             ++ +DLI +LL +NP  R+
Sbjct: 231 MPSF---------LSIEAKDLIHQLLRRNPADRL 255

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + K 
Sbjct: 208 KMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKG 266
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             TF    +   K+  E  K  DLI K+L   P  RI +
Sbjct: 267 KYTFE---LPQWKKVSESAK--DLIRKMLTYVPSMRISA 300

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL--IN 408
           N + K  +GT  Y+APEV+ G  +    D W+ GV LY +L GT PF G+N    L  + 
Sbjct: 177 NTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVE 235
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
             K     P+    S          +DLI K+L  +P  RI
Sbjct: 236 TGKYAFDLPQWRTISDDA-------KDLIRKMLTFHPSLRI 269

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL--IN 408
           N + K  +GT  Y+APEV+ G  +    D W+ GV LY +L GT PF G+N    L  + 
Sbjct: 177 NTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVE 235
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
             K     P+    S          +DLI K+L  +P  RI
Sbjct: 236 TGKYAFDLPQWRTISDDA-------KDLIRKMLTFHPSLRI 269

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF   +  +T ++ LK
Sbjct: 174 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF---SEHRTQVS-LK 229
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 230 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 269

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF     + +    LK
Sbjct: 299 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS----LK 354
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 355 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 394

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF   +  +T ++ LK
Sbjct: 174 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF---SEHRTQVS-LK 229
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 230 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 269

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF   +  +T ++ LK
Sbjct: 173 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF---SEHRTQVS-LK 228
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 229 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 268

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF     + +    LK
Sbjct: 313 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS----LK 368
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 369 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 408

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF   +  +T ++ LK
Sbjct: 174 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF---SEHRTQVS-LK 229
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
             +T  +         E   K  DL+ KLLV +PK R  +
Sbjct: 230 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTT 269

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL--IN 408
           N + K  +GT  Y+APEV+ G  +    D W+ GV LY +L GT PF G+N    L  + 
Sbjct: 177 NTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVE 235
Query: 409 ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
             K     P+    S          +DLI K+L  +P  RI
Sbjct: 236 TGKYAFDLPQWRTISDDA-------KDLIRKMLTFHPSLRI 269

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 355 KSFVGTHEYLAPEV---ISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           ++  GT  YLAPEV   +   G+  AVD W+LGV L+  L G  PF   +  +T ++ LK
Sbjct: 180 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF---SEHRTQVS-LK 235
Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             +T  +         E   K  DL+ KLLV +PK R
Sbjct: 236 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKAR 272

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 74/226 (32%)
Query: 236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS 295
           H  G+++RD+KP N+L+  + H+ ++DF LS              SF  I +    +IP 
Sbjct: 126 HSGGLLHRDMKPSNILLNAECHVKVADFGLS-------------RSFVNIRRVTN-NIP- 170
Query: 296 CATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSK 355
                                        +I E  +    DQ +L D             
Sbjct: 171 ----------------------------LSINENTENFDDDQPILTD------------- 189
Query: 356 SFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            +V T  Y APE++ G   +   +D W+LG  L E+L G   F G +    L  I     
Sbjct: 190 -YVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERI----- 243
Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR 460
               IGV      E+V  +Q   +K +++       SLK  VEI++
Sbjct: 244 ----IGVIDFPSNEDVESIQSPFAKTMIE-------SLKEKVEIRQ 278

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 355 KSFVGTHEYLAPEVI------SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +   GT  YLAPE++      +  G+G  VD W  GV L+ +L G+ PF        L  
Sbjct: 257 RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRM 316
Query: 409 ILKKPLTFPRIGVSSSKEFEE-VVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I++    F      SS E+++    ++DLIS+LL  +P+ R+ + +      +H FF+
Sbjct: 317 IMEGQYQF------SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQA----LQHPFFE 364

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQG---HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           +A   + VGT  ++APE +S       G A+D W +GV LY  ++G  PF  E       
Sbjct: 191 DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHS 250
Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            I  + L FP        +  E   L+DLI+++L KNP+ RI
Sbjct: 251 KIKSQALEFP-----DQPDIAE--DLKDLITRMLDKNPESRI 285

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-----K 412
           VGT  ++APEV+  + +G  VD W  GV L+ +L G  PF G   E+    I+K      
Sbjct: 194 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMN 252
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           P  +  I  S+          +DL+ ++L+ +P +RI
Sbjct: 253 PRQWSHISESA----------KDLVRRMLMLDPAERI 279

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-----K 412
           VGT  ++APEV+  + +G  VD W  GV L+ +L G  PF G   E+    I+K      
Sbjct: 194 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMN 252
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           P  +  I  S+          +DL+ ++L+ +P +RI
Sbjct: 253 PRQWSHISESA----------KDLVRRMLMLDPAERI 279

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-----K 412
           VGT  ++APEV+  + +G  VD W  GV L+ +L G  PF G   E+    I+K      
Sbjct: 196 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMN 254
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           P  +  I  S+          +DL+ ++L+ +P +RI
Sbjct: 255 PRQWSHISESA----------KDLVRRMLMLDPAERI 281

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVISG+ + G  VD W+ GV LY ML    PF  E+      NI    
Sbjct: 164 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV 223
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            T P+     +           LI ++L+ NP  RI       EI + ++FK
Sbjct: 224 YTLPKFLSPGA---------AGLIKRMLIVNPLNRISIH----EIMQDDWFK 262

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVISG+ + G  VD W+ GV LY ML    PF  E+      NI    
Sbjct: 160 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV 219
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            T P+     +           LI ++L+ NP  RI       EI + ++FK
Sbjct: 220 YTLPKFLSPGA---------AGLIKRMLIVNPLNRISIH----EIMQDDWFK 258

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P   
Sbjct: 146 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 205
Query: 400 ENNEKT----------LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            + ++           L  I+ +P      GV S       ++ QD ++K L+KNP +R 
Sbjct: 206 PDAKEDSRPPMAIFELLDYIVNEPPPKLPSGVFS-------LEFQDFVNKCLIKNPAER- 257
Query: 450 GSLKGSVEIKRHEFFK 465
             LK   ++  H F K
Sbjct: 258 ADLK---QLMVHAFIK 270

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++ +      +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVRE 234
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P     S++       L  ++ K L KNP+ R    + + E++        +   +
Sbjct: 235 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR---YQTAAEMR-------ADLVRV 279
Query: 473 RSIKPPEVP 481
            + +PPE P
Sbjct: 280 HNGEPPEAP 288

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVISG+ + G  VD W+ GV LY ML    PF  E+      NI    
Sbjct: 169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV 228
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            T P+     +           LI ++L+ NP  RI       EI + ++FK
Sbjct: 229 YTLPKFLSPGA---------AGLIKRMLIVNPLNRISIH----EIMQDDWFK 267

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVISG+ + G  VD W+ GV LY ML    PF  E+      NI    
Sbjct: 170 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV 229
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            T P+     +           LI ++L+ NP  RI       EI + ++FK
Sbjct: 230 YTLPKFLSPGA---------AGLIKRMLIVNPLNRISIH----EIMQDDWFK 268

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  VGT  ++APEVIS   +G+ VD W+LG+ + EM+ G  P+  E   + +  I  +
Sbjct: 197 KRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI--R 254
Query: 413 PLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
               PR+     K+  +V   L+  +  +LV+ P +R      + E+  H F K
Sbjct: 255 DSLPPRV-----KDLHKVSSVLRGFLDLMLVREPSQR----ATAQELLGHPFLK 299

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 18/114 (15%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           ++  G+  Y APEVISG+ + G  VD W+ GV LY +L GT PF  E+           P
Sbjct: 168 RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH----------VP 217
Query: 414 LTFPRI--GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             F +I  GV    E+     +  L+  +L  +P KR  ++K   +I+ HE+FK
Sbjct: 218 TLFKKIRGGVFYIPEYLN-RSVATLLMHMLQVDPLKR-ATIK---DIREHEWFK 266

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 359 GTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           G+  Y APEVISG+ + G  VD W+ GV LY +L GT PF  E+           P  F 
Sbjct: 172 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH----------VPTLFK 221
Query: 418 RI--GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           +I  GV    E+     +  L+  +L  +P KR  ++K   +I+ HE+FK
Sbjct: 222 KIRGGVFYIPEYLN-RSVATLLMHMLQVDPLKR-ATIK---DIREHEWFK 266

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 350 INARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +  +  +F G+  Y APE+  G+ + G  VD W+LGV LY ++ G+ PF G+N ++    
Sbjct: 166 VGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRER 225
Query: 409 ILKKPLTFP 417
           +L+     P
Sbjct: 226 VLRGKYRIP 234

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 360 THEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRI 419
           T  ++APEV+  QG+ +A D W+LGV LY  L G TPF     + T   IL + +   + 
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTPF-ANGPDDTPEEILAR-IGSGKF 240
Query: 420 GVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            +S           +DL+SK L  +P +R+
Sbjct: 241 SLSGGYWNSVSDTAKDLVSKXLHVDPHQRL 270

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           + K  +GT  Y+APEV+  + +    D W++GV L+ +L G  PF G+ +++ L  + K 
Sbjct: 194 KMKERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKG 252
Query: 413 PLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGS 451
             TF       S E++ V +  +DLI ++L  + ++RI +
Sbjct: 253 KYTF------DSPEWKNVSEGAKDLIKQMLQFDSQRRISA 286

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 350 INARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF 397
           IN  +++F GT +Y+APE+I    +G+G A D W+LG  + EM  G  PF
Sbjct: 176 INPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF 225

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           L D  V  + I+  +  FVGT  Y++PE + G  +    D W++G+ L EM  G  P   
Sbjct: 149 LCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPRPP 208
Query: 400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               + L  I+ +P   P++    S  F   ++ QD ++K L+KNP +R
Sbjct: 209 MAIFELLDYIVNEPP--PKL---PSAVFS--LEFQDFVNKCLIKNPAER 250

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 359 GTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           G+  Y APEVISG+ + G  VD W+ GV LY +L GT PF  ++           P  F 
Sbjct: 177 GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH----------VPTLFK 226
Query: 418 RI--GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           +I  G+  + ++     +  L+  +L  +P KR  ++K   +I+ HE+FK
Sbjct: 227 KICDGIFYTPQYLNPSVIS-LLKHMLQVDPMKR-ATIK---DIREHEWFK 271

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 282 FEAIEKYEKCSIP--SCATPMQPVLSCFSSVSHGXXXXXXAVTVTTIREQVDG-----DH 334
           F  ++K   C IP       ++ VL+ FS + +        V  + I    +G     D 
Sbjct: 137 FFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDF 196
Query: 335 HDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLY 392
            + E + D ++         K   GT+E++ PE  S +   +G+ VD W+LG+ LY M Y
Sbjct: 197 GESEYMVDKKI---------KGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFY 247
Query: 393 GTTPFKGENNEKTLINILKK--------------PLTFPRIGVSSSKEFEEVVKLQDLIS 438
              PF  + +   L N ++               PLT  +   S++    E +   D + 
Sbjct: 248 NVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDI---DFLK 304
Query: 439 KLLVKNPKKRIGS 451
             L KNP +RI S
Sbjct: 305 LFLRKNPAERITS 317

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 350 INARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPF 397
           IN  +++F GT +Y+APE+I    +G+G A D W+LG  + EM  G  PF
Sbjct: 162 INPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF 211

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           N    +  GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  E   K    I 
Sbjct: 161 NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIK 220
Query: 411 KKPLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           +    F       S  ++++ +  +D I  LL K+P +R    K       H +  G N 
Sbjct: 221 EGYYEF------ESPFWDDISESAKDFICHLLEKDPNERYTCEKA----LSHPWIDG-NT 269
Query: 470 ALIRSIKP 477
           AL R I P
Sbjct: 270 ALHRDIYP 277

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 351 NARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           N   K+FVGT  ++APEV+   +G+    D W+ G+   E+  G  P+      K L+  
Sbjct: 175 NKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLT 234
Query: 410 LKKPLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           L+        GV   +  ++  K  + +IS  L K+P+KR      + E+ RH+FF+
Sbjct: 235 LQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKR----PTAAELLRHKFFQ 287

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE 389
           +D D  +Q +L        P  AR    VGT  Y++PE I G  +   VD ++LG+ L+E
Sbjct: 168 MDQDEEEQTVL-----TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFE 222
Query: 390 MLYGTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPK 446
           +LY   PF  +    +TL ++  + L FP   + + K   E V +QD++S   ++ P+
Sbjct: 223 LLY---PFSTQMERVRTLTDV--RNLKFP--PLFTQKYPCEYVMVQDMLSPSPMERPE 273

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 234
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P     S++       L  ++ K L KNP+ R    + + E++        +   +
Sbjct: 235 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR---YQTAAEMR-------ADLVRV 279
Query: 473 RSIKPPEVP 481
            + +PPE P
Sbjct: 280 HNGEPPEAP 288

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 351 NARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           N   K+FVGT  ++APEV+   +G+    D W+ G+   E+  G  P+      K L+  
Sbjct: 180 NKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLT 239
Query: 410 LKKPLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           L+        GV   +  ++  K  + +IS  L K+P+KR      + E+ RH+FF+
Sbjct: 240 LQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKR----PTAAELLRHKFFQ 292

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 234
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P     S++       L  ++ K L KNP+ R    + + E++        +   +
Sbjct: 235 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR---YQTAAEMR-------ADLVRV 279
Query: 473 RSIKPPEVP 481
            + +PPE P
Sbjct: 280 HNGEPPEAP 288

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 234
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P     S++       L  ++ K L KNP+ R    + + E++        +   +
Sbjct: 235 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR---YQTAAEMR-------ADLVRV 279
Query: 473 RSIKPPEVP 481
            + +PPE P
Sbjct: 280 HNGEPPEAP 288

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 234
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P     S++       L  ++ K L KNP+ R    + + E++        +   +
Sbjct: 235 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR---YQTAAEMR-------ADLVRV 279
Query: 473 RSIKPPEVP 481
            + +PPE P
Sbjct: 280 HNGEPPEAP 288

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 192 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 251
Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
               P     S++       L  ++ K L KNP+ R
Sbjct: 252 DPIPP-----SARHEGLSADLDAVVLKALAKNPENR 282

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAAGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIX 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE 400
            ++   +GT +Y +PE   G+      D +++G+ LYEML G  PF GE
Sbjct: 167 TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE 215

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INAMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 358 VGTHEYLAPEVISGQGHGSAV-----DWWTLGVFLYEMLYGTTPFKGENNEK-------- 404
            G+ EY+APEV+      +++     D W+LGV LY +L G  PF G             
Sbjct: 182 CGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEA 241
Query: 405 --TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
                N+L + +   +               +DLISKLLV++ K+R+     + ++ +H 
Sbjct: 242 CPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRL----SAAQVLQHP 297
Query: 463 FFKG 466
           + +G
Sbjct: 298 WVQG 301

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 55
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 56  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 99
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 100 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 145
Query: 262 DFDLS 266
           DF L+
Sbjct: 146 DFGLA 150

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIX 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 358 VGTHEYLAPEVISGQGHGSAV-----DWWTLGVFLYEMLYGTTPFKGENNEK-------- 404
            G+ EY+APEV+      +++     D W+LGV LY +L G  PF G             
Sbjct: 182 CGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEA 241
Query: 405 --TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
                N+L + +   +               +DLISKLLV++ K+R+     + ++ +H 
Sbjct: 242 CPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRL----SAAQVLQHP 297
Query: 463 FFKG 466
           + +G
Sbjct: 298 WVQG 301

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIX 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-------------- 402
           +V T  Y APEVI G G+   VD W++G  + E++ G+  F+G ++              
Sbjct: 183 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 242
Query: 403 --------EKTLINILKKPLTFPRIGV-----------SSSKEFEEVVKLQDLISKLLVK 443
                   + T+ N ++    +P I              S ++  +  + +DL+SK+LV 
Sbjct: 243 SAEFMAALQPTVRNYVENRPAYPGIAFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 302
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 303 DPDKRIS 309

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 56
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 100
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 101 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 146
Query: 262 DFDLS 266
           DF L+
Sbjct: 147 DFGLA 151

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-REALAIRKKLHRADMEKV 141
           ++ + L++ LG G  G V L   R     + +   A+K+VD + A+   + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNR-----VTEEAVAVKIVDMKRAVDCPENIKK---EIC 57
Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKXXXXXXX 201
           I  ML+H  +   Y      +   L +EYC GG+L+   +   G                
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG---------------- 101
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D   FF+               H +GI +RD+KPEN+L+ E  ++ +S
Sbjct: 102 --------MPEPDAQRFFH------QLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS 147
Query: 262 DFDLS 266
           DF L+
Sbjct: 148 DFGLA 152

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           + S VGT  Y++PE I   G+    D W+LG  LYEM    +PF G+  +  L ++ KK 
Sbjct: 193 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD--KMNLYSLCKKI 250
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
                  + S    EE   L+ L++  +  +P+KR
Sbjct: 251 EQCDYPPLPSDHYSEE---LRQLVNMCINPDPEKR 282

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 346 VAEPINARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           +A   +A    +V T  Y APEVI S   +   VD W++G  + EML G T FKG++   
Sbjct: 172 LARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD 231
Query: 405 TLINILK 411
            L  ILK
Sbjct: 232 QLTQILK 238

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-------------- 402
           +V T  Y APEVI G G+ + VD W++G  + E++ G   F+G ++              
Sbjct: 185 YVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTP 244
Query: 403 --------EKTLINILKKPLTFPRIGV-----------SSSKEFEEVVKLQDLISKLLVK 443
                   + T+ N ++    +P I              S ++  +  + +DL+SK+LV 
Sbjct: 245 SAEFMAALQPTVRNYVENRPKYPGIKFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPDKRIS 311

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 346 VAEPINARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           +A   +A    +V T  Y APEVI S   +   VD W++G  + EML G T FKG++   
Sbjct: 190 LARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD 249
Query: 405 TLINILK 411
            L  ILK
Sbjct: 250 QLTQILK 256

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 31/129 (24%)
Query: 359 GTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN----------- 402
           G+ EY+APEV+         +    D W+LGV LY ML G  PF G              
Sbjct: 183 GSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVC 242
Query: 403 ----EKTLINILKKPLTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKGSVE 457
                K   +I +    FP       K++  +  + +DLISKLLV++ K+R+     + +
Sbjct: 243 RVCQNKLFESIQEGKYEFP------DKDWAHISSEAKDLISKLLVRDAKQRL----SAAQ 292
Query: 458 IKRHEFFKG 466
           + +H + +G
Sbjct: 293 VLQHPWVQG 301

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 355 KSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVI+G+ + G  VD W+ G+ LY ML G  PF    +++ + N+ KK 
Sbjct: 165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF----DDEFIPNLFKKV 220
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            +     V    +F      Q LI +++V +P +RI       EI+R  +F
Sbjct: 221 NS----CVYVMPDFLS-PGAQSLIRRMIVADPMQRITIQ----EIRRDPWF 262

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 215 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 274
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           + ++ +  P   + FP I             LQD++   L ++PK+RI 
Sbjct: 275 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRIS 314

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +++ +GT  YL+PE+   + + +  D W LG  LYE+      F+  + +  ++ I+   
Sbjct: 182 ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISG- 240
Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            +FP + +  S +      L+ L+S+L  +NP+ R
Sbjct: 241 -SFPPVSLHYSYD------LRSLVSQLFKRNPRDR 268

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 171 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 230
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           + ++ +  P   + FP I             LQD++   L ++PK+RI 
Sbjct: 231 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRIS 270

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 215 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 274
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           + ++ +  P   + FP I             LQD++   L ++PK+RI
Sbjct: 275 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRI 313

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 246
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           + ++ +  P   + FP I             LQD++   L ++PK+RI 
Sbjct: 247 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRIS 286

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 246
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           + ++ +  P   + FP I             LQD++   L ++PK+RI 
Sbjct: 247 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRIS 286

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 167 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 226
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           + ++ +  P   + FP I             LQD++   L ++PK+RI
Sbjct: 227 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRI 265

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           S  G + ++APEVI         D W+ GV L+E+L G  PF+G +       +    L 
Sbjct: 173 SAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLA 232
Query: 416 FP 417
            P
Sbjct: 233 LP 234

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VGT  Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 227
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG 450
           + ++ +  P   + FP I             LQD++   L ++PK+RI 
Sbjct: 228 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRIS 267

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           +++ +  Y APE+I G  H  +AVD W++G    EM+ G   F+G+N+   L  I++
Sbjct: 190 AYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVR 246

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           FVGT +YLAPE++  + +   VD+W+ G   +E + G  PF
Sbjct: 184 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           FVGT +YLAPE++  + +   VD+W+ G   +E + G  PF
Sbjct: 183 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  LG G  G VY  Q +   V       A KV+D ++    ++L    +E  IL
Sbjct: 37  DFWEIIGELGDGAFGKVYKAQNKETSV-----LAAAKVIDTKS---EEELEDYMVEIDIL 88
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKXXXXXXX 201
              DHP +  L   F   +   +++E+C GG  D       +P     I           
Sbjct: 89  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA- 147
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                             NY              H   I++RDLK  N+L   DG I L+
Sbjct: 148 -----------------LNY-------------LHDNKIIHRDLKAGNILFTLDGDIKLA 177
Query: 262 DFDLSFK 268
           DF +S K
Sbjct: 178 DFGVSAK 184

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 173 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 230

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE 389
           +D D  +Q +L        P  A     VGT  Y++PE I G  +   VD ++LG+ L+E
Sbjct: 214 MDQDEEEQTVL-----TPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFE 268
Query: 390 MLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPK 446
           +LY  +         T +  LK PL F      + K  +E + +QD++S    + P+
Sbjct: 269 LLYSFSTQMERVRIITDVRNLKFPLLF------TQKYPQEHMMVQDMLSPSPTERPE 319

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  LG G  G VY  Q +   V       A KV+D ++    ++L    +E  IL
Sbjct: 37  DFWEIIGELGDGAFGKVYKAQNKETSV-----LAAAKVIDTKS---EEELEDYMVEIDIL 88
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKXXXXXXX 201
              DHP +  L   F   +   +++E+C GG  D       +P     I           
Sbjct: 89  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA- 147
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                             NY              H   I++RDLK  N+L   DG I L+
Sbjct: 148 -----------------LNY-------------LHDNKIIHRDLKAGNILFTLDGDIKLA 177
Query: 262 DFDLSFK 268
           DF +S K
Sbjct: 178 DFGVSAK 184

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 41/187 (21%)
Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  LG G  G VY  Q +   V       A KV+D ++    ++L    +E  IL
Sbjct: 37  DFWEIIGELGDGAFGKVYKAQNKETSV-----LAAAKVIDTKS---EEELEDYMVEIDIL 88
Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKXXXXXXX 201
              DHP +  L   F   +   +++E+C GG  D       +P     I           
Sbjct: 89  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA- 147
Query: 202 XXXXXXXXXXHTDVTLFFNYRFXXXXXXXXXXXXHMMGIVYRDLKPENVLVREDGHIMLS 261
                             NY              H   I++RDLK  N+L   DG I L+
Sbjct: 148 -----------------LNY-------------LHDNKIIHRDLKAGNILFTLDGDIKLA 177
Query: 262 DFDLSFK 268
           DF +S K
Sbjct: 178 DFGVSAK 184

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 146 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 146 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           S +GT  Y+A EV+ G GH    +D ++LG+  +EM+Y   PF   +     +NILKK  
Sbjct: 189 SAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PF---STGMERVNILKK-- 240
Query: 415 TFPRIGVSSSKEFEE-VVKLQDLISKLLVK-NPKKRIGS 451
               + +    +F++  +K++  I +LL+  +P KR G+
Sbjct: 241 -LRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGA 278

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI-L 410
           A+    +GT  ++APEVI   G+    D W+LG+   EM  G  P+   +  + +  I  
Sbjct: 180 AKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPT 239
Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             P TF +  + S           D + + LVK+P++R
Sbjct: 240 NPPPTFRKPELWSD-------NFTDFVKQCLVKSPEQR 270

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           S +GT  Y+A EV+ G GH    +D ++LG+  +EM+Y   PF   +     +NILKK  
Sbjct: 189 SAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PF---STGMERVNILKK-- 240
Query: 415 TFPRIGVSSSKEFEE-VVKLQDLISKLLVK-NPKKRIGS 451
               + +    +F++  +K++  I +LL+  +P KR G+
Sbjct: 241 -LRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGA 278

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAV-----DWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            R  +F+GT  ++APEVI+   +  A      D W+LG+   EM  G  P    +  + L
Sbjct: 184 GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL 243
Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             I + P   PR+    SK++ +  K Q  I   LVKN  +R      + ++ +H F +
Sbjct: 244 FLIPRNPA--PRL---KSKKWSK--KFQSFIESCLVKNHSQR----PATEQLMKHPFIR 291

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 146 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 208 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 265

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF 397
           L D  V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P 
Sbjct: 146 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           L D  V  + I++ + SFVGT  Y+APE + G  +    D W++G+ L E+  G  P   
Sbjct: 156 LCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPIP- 214
Query: 400 ENNEKTLINILKKPLT 415
             + K L  I  +P+ 
Sbjct: 215 PPDAKELEAIFGRPVV 230

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++GV + EM+ G   F G ++
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++GV + EM+ G   F G ++
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVS 422
           Y+APEV+  + +  + D W+LGV +Y +L G  PF   N  + +   +K+ +   + G  
Sbjct: 176 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYS-NTGQAISPGMKRRIRLGQYGFP 234
Query: 423 SSKEFEEVVKLQDLISKLLVKNPKKRI 449
           + +  E     + LI  LL  +P +R+
Sbjct: 235 NPEWSEVSEDAKQLIRLLLKTDPTERL 261

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVS 422
           Y+APEV+  + +  + D W+LGV +Y +L G  PF   N  + +   +K+ +   + G  
Sbjct: 195 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYS-NTGQAISPGMKRRIRLGQYGFP 253
Query: 423 SSKEFEEVVKLQDLISKLLVKNPKKRI 449
           + +  E     + LI  LL  +P +R+
Sbjct: 254 NPEWSEVSEDAKQLIRLLLKTDPTERL 280

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 245
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 246 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 305
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 306 DPAKRIS 312

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 359 GTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           G+  +  PE+ +G     G  VD W+ GV LY +  G  PF+G+N  K   NI K     
Sbjct: 173 GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAI 232
Query: 417 PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           P          +    L DL+  +L   P KR  S++   +I++H +F+
Sbjct: 233 PG---------DCGPPLSDLLKGMLEYEPAKRF-SIR---QIRQHSWFR 268

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 282
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 283 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 342
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 343 DPAKRIS 349

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           FV T  Y APEVI G G+   VD W++G  + EM+ G   F G ++
Sbjct: 187 FVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 232

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K+FVGT  Y++PE ++   +    D W+LG  LYE+     PF    ++K L   +++ 
Sbjct: 173 AKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA-FSQKELAGKIREG 231
Query: 414 LTFPRIGVSSSKEFEEVV 431
             F RI    S E  E++
Sbjct: 232 -KFRRIPYRYSDELNEII 248

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 184 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 243
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 244 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 303
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 304 DPAKRIS 310

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 356 SFVGTHEYLAPEVI----SGQGHGSAV-------DWWTLGVFLYEMLYGTTPFKGENNEK 404
           S VG   Y+ PE I    S + +G +        D W+LG  LY M YG TPF+   N+ 
Sbjct: 215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 274
Query: 405 TLINILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           + ++ +  P   + FP I             LQD++   L ++PK+RI
Sbjct: 275 SKLHAIIDPNHEIEFPDIPEKD---------LQDVLKCCLKRDPKQRI 313

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 179 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 238
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 239 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 298
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 299 DPAKRIS 305

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 245
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 246 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 305
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 306 DPAKRIS 312

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 179 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 238
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 239 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 298
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 299 DPAKRIS 305

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 282
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 283 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 342
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 343 DPAKRIS 349

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K+FVGT  Y++PE ++   +    D W+LG  LYE+     PF    ++K L   +++ 
Sbjct: 173 AKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA-FSQKELAGKIREG 231
Query: 414 LTFPRIGVSSSKEFEEVV 431
             F RI    S E  E++
Sbjct: 232 -KFRRIPYRYSDELNEII 248

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 237
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 298 DPAKRIS 304

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 237
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 298 DPAKRIS 304

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +K FVGT  Y++PE ++   +    D W+LG  LYE+     PF    ++K L   +++ 
Sbjct: 173 AKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA-FSQKELAGKIREG 231
Query: 414 LTFPRIGVSSSKEFEEVV 431
             F RI    S E  E++
Sbjct: 232 -KFRRIPYRYSDELNEII 248

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE---NNEKTLINILKKP 413
           +V T  Y APEVI G G+   VD W++G  + EM+     F G    +    +I  L  P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 244
Query: 414 ------------------------LTFPRI------GVSSSKEFEEVVKLQDLISKLLVK 443
                                   LTFP++         S     +  + +DL+SK+LV 
Sbjct: 245 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 444 NPKKRIG 450
           +P KRI 
Sbjct: 305 DPAKRIS 311

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G ++
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G ++
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G ++
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 231

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPF 397
           +F GT EY APEV+ G  + G  ++ W+LGV LY +++   PF
Sbjct: 188 TFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF 230

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G ++
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-49
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-44
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	3e-47
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	8e-42
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-47
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	9e-41
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	7e-47
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	6e-40
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	8e-47
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-38
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-45
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-41
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-44
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-40
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-44
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-38
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	4e-44
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	9e-39
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	6e-44
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-43
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-43
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	3e-42
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-42
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-37
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-42
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	5e-39
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-42
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-40
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-42
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-38
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-36
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	8e-41
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-39
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-40
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-40
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-40
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	6e-40
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-40
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-39
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	7e-40
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-39
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-39
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-38
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-36
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-35
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-34
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-33
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-33
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-32
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-31
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	9e-30
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-30
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-20
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-30
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-22
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-28
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-26
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-27
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-20
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-26
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	5e-24
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-26
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	9e-26
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-16
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-25
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-18
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	5e-25
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-24
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-20
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-24
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-18
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-24
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-16
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-24
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-22
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-24
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-19
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-24
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-16
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-23
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-22
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-23
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-18
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-23
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-21
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-23
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-17
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-23
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-20
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-23
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-20
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-23
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-19
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	5e-23
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	9e-19
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	6e-23
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	7e-19
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-23
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-19
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-22
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-19
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-22
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-22
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-22
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-21
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-22
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-19
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-22
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-19
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-22
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-19
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-22
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	7e-20
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-22
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	6e-21
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-22
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-21
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-22
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-21
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-22
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-20
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-22
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-22
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-22
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-20
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-21
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-20
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-21
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-12
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-21
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-21
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-21
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-18
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-21
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-19
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	3e-21
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	6e-21
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-20
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-20
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-14
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-20
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-18
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-20
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-17
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-20
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	8e-19
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-20
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	7e-17
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-20
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-19
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-20
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-19
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-20
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-12
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-20
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-16
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-20
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-18
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-19
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-18
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-19
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-18
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-19
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-17
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-19
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-18
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-19
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-18
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	6e-19
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	8e-19
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-18
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-15
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-18
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-18
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-18
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-17
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-18
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-17
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	7e-18
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	8e-14
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	8e-18
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-16
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-17
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-17
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-17
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-17
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-09
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-17
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-16
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-17
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	9e-16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-09
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	7e-17
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-16
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-15
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-16
3uqc_A	286	Probable conserved transmembrane protein; structur	7e-05
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-15
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-15
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-06
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-15
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	9e-13
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-15
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-15
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-14
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-14
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-06
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	5e-14
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-11
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	7e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	7e-14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-10
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-12
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-13
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-13
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-13
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	8e-05
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	8e-13
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-06
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	9e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-06
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-12
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-08
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-12
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-12
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-12
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	5e-12
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	4e-12
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	6e-12
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-06
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-09
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-11
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-07
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-11
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-05
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-11
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-11
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	6e-04
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-11
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-11
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	4e-11
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-11
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-11
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-11
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-10
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	2e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-10
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	4e-10
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	6e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-10
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-09
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-09
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	7e-09
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	8e-09
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	8e-09
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	9e-06
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	9e-09
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	9e-09
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	7e-07
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-08
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-06
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-08
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-08
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	5e-08
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-08
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-05
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	7e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	7e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	9e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	8e-06
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	1e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-06
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-07
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-07
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-07
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	9e-06
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-06
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-07
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	4e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-07
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	4e-07
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	3e-05
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	5e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	5e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-07
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	9e-07
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	9e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	9e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-06
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	1e-06
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	4e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	3e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	7e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-06
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	9e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	9e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-05
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	9e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-04

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  170 bits (433), Expect = 4e-49
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 344 EVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
            +  E   AR+ SFVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N  
Sbjct: 179 VLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEY 238

Query: 404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRH 461
                I+K    FP        +F    +  DL+ KLLV +  KR+G   ++G   +K H
Sbjct: 239 LIFQKIIKLEYDFPE-------KFFPKAR--DLVEKLLVLDATKRLGCEEMEGYGPLKAH 289

Query: 462 EFFKGINWALIRSIKPPEVP 481
            FF+ + W  +    PP++ 
Sbjct: 290 PFFESVTWENLHQQTPPKLT 309

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  158 bits (401), Expect = 2e-44
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 35/189 (18%)

Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
             +   + F+  + LG G    V L +            YA+K++++  +    K+    
Sbjct: 24  PRKKRPEDFKFGKILGEGSFSTVVLARELAT-----SREYAIKILEKRHIIKENKVPYVT 78

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
            E+ +++ LDHPF   LY  F+        + Y   G+L    ++     F  +      
Sbjct: 79  RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCT---- 132

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                                   RFY AE + ALEYLH  GI++RDLKPEN+L+ ED H
Sbjct: 133 ------------------------RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMH 168

Query: 258 IMLSDFDLS 266
           I ++DF  +
Sbjct: 169 IQITDFGTA 177

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  166 bits (422), Expect = 3e-47
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
             ++ SF GT EY+APEV++ +GH  + DWW+ GV ++EML GT PF+G++ ++T+  IL
Sbjct: 180 EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMIL 239

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINW 469
           K  L  P+     S E       Q L+  L  +NP  R+G+   G  EIKRH FF  I+W
Sbjct: 240 KAKLGMPQ---FLSPE------AQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDW 290

Query: 470 ALI--RSIKPPEVPN 482
             +  R I PP  P 
Sbjct: 291 NKLYRREIHPPFKPA 305

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  151 bits (383), Expect = 8e-42
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 33/192 (17%)

Query: 75  RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH 134
           +    +     F LL+ LG G  G V+L   +       +  YAMKV+ +  L +R ++ 
Sbjct: 15  KEGHEKADPSQFELLKVLGQGSFGKVFLV--KKISGSDARQLYAMKVLKKATLKVRDRVR 72

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
              ME+ IL  ++HPF+  L+  F+      L++++  GGDL+    ++    F      
Sbjct: 73  -TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDV- 128

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                                      +FY AE  LAL++LH +GI+YRDLKPEN+L+ E
Sbjct: 129 ---------------------------KFYLAELALALDHLHSLGIIYRDLKPENILLDE 161

Query: 255 DGHIMLSDFDLS 266
           +GHI L+DF LS
Sbjct: 162 EGHIKLTDFGLS 173

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  165 bits (420), Expect = 4e-47
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 33/171 (19%)

Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           +   + +  GT +Y+APEV+S + +  ++DWW+ G+ +YEML G TPF   N  KT   I
Sbjct: 156 VPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKI 215

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGIN 468
           L   L FP    +          ++DL+S+L+ ++  +R+G+L+ G+ ++K H +FK + 
Sbjct: 216 LNAELRFPP-FFNED--------VKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVV 266

Query: 469 WALI--RSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
           W  +  R+I+ P               Y P + + + D      T  FD +
Sbjct: 267 WEKLLSRNIETP---------------YEPPIQQGQGD------TSQFDKY 296

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  148 bits (376), Expect = 9e-41
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 35/187 (18%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           +  L  F++LR LG+G  G V+L + R+        +YAMKV+ +E +   K++   + E
Sbjct: 2   KYSLQDFQILRTLGTGSFGRVHLIRSRHN-----GRYYAMKVLKKEIVVRLKQVEHTNDE 56

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           +++L+++ HPF+  ++  F+ +    ++M+Y  GG+L++  ++   +RF    A      
Sbjct: 57  RLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVA------ 108

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 +FYAAE  LALEYLH   I+YRDLKPEN+L+ ++GHI 
Sbjct: 109 ----------------------KFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIK 146

Query: 260 LSDFDLS 266
           ++DF  +
Sbjct: 147 ITDFGFA 153

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  165 bits (419), Expect = 7e-47
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              + +F GT EY+APE++   GH  AVDWW+LG  +Y+ML G  PF GEN +KT+  IL
Sbjct: 175 GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKIL 234

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINW 469
           K  L  P      ++E       +DL+ KLL +N   R+G+    + E++ H FF+ INW
Sbjct: 235 KCKLNLPP---YLTQE------ARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINW 285

Query: 470 ALI--RSIKPPEVPN 482
             +  R ++PP  P 
Sbjct: 286 EELLARKVEPPFKPL 300

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  146 bits (371), Expect = 6e-40
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 33/194 (17%)

Query: 74  LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK- 132
           + R   ++  + F LLR LG G  G V+    R          +AMKV+ +  +    K 
Sbjct: 7   VNRGPEKIRPECFELLRVLGKGGYGKVFQV--RKVTGANTGKIFAMKVLKKAMIVRNAKD 64

Query: 133 LHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
                 E+ IL  + HPF+  L   F+      L++EY  GG+L+   +R+    F   +
Sbjct: 65  TAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDT 122

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
           A                             FY AE  +AL +LH  GI+YRDLKPEN+++
Sbjct: 123 A----------------------------CFYLAEISMALGHLHQKGIIYRDLKPENIML 154

Query: 253 REDGHIMLSDFDLS 266
              GH+ L+DF L 
Sbjct: 155 NHQGHVKLTDFGLC 168

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  166 bits (422), Expect = 8e-47
 Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 11/134 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           N+ + +F GT EYLAPEV+  Q +   VDWW LG  LYEMLYG  PF   N  +   NIL
Sbjct: 193 NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 252

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
            KPL       + +         + L+  LL K+  KR+G+    +EIK H FF  INW 
Sbjct: 253 NKPLQLKP---NITNS------ARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWD 303

Query: 471 LI--RSIKPPEVPN 482
            +  + I PP  PN
Sbjct: 304 DLINKKITPPFNPN 317

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  143 bits (362), Expect = 2e-38
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 36/191 (18%)

Query: 77  AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA 136
           +        F  L+ +G G  G V L + +       + FYA+KV+ ++A+  +K+    
Sbjct: 31  SNPHAKPSDFHFLKVIGKGSFGKVLLARHKAE-----EVFYAVKVLQKKAILKKKEEKHI 85

Query: 137 DMEKVILTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF 195
             E+ +L   + HPFL  L+  F+ +     V++Y  GG+L+   QR+  + F    A  
Sbjct: 86  MSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRA-- 141

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                                     RFYAAE   AL YLH + IVYRDLKPEN+L+   
Sbjct: 142 --------------------------RFYAAEIASALGYLHSLNIVYRDLKPENILLDSQ 175

Query: 256 GHIMLSDFDLS 266
           GHI+L+DF L 
Sbjct: 176 GHIVLTDFGLC 186

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  161 bits (410), Expect = 3e-45
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +  R+ +  GT E LAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   +  
Sbjct: 188 AKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFK 465
             I+   + FP    SS         L+DL+  LL  +  KR G+LK G  +IK H++F 
Sbjct: 248 EKIVSGKVRFPS-HFSSD--------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298

Query: 466 GINWALI--RSIKPPEVPN 482
             +W  I  R ++ P +P 
Sbjct: 299 TTDWIAIYQRKVEAPFIPK 317

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  150 bits (382), Expect = 2e-41
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 35/222 (15%)

Query: 45  SSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQ 104
           +++AA + S   S K   A        K    +Q    LD F  ++ LG+G  G V L +
Sbjct: 2   NAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVK 61

Query: 105 IRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS 164
            +          YAMK++D++ +   K++     EK IL  ++ PFL  L   F+ +   
Sbjct: 62  HKES-----GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNL 116

Query: 165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY 224
            +VMEY  GG++++  +R    RF    A                            RFY
Sbjct: 117 YMVMEYVAGGEMFSHLRRI--GRFSEPHA----------------------------RFY 146

Query: 225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           AA+ +L  EYLH + ++YRDLKPEN+L+ + G+I ++DF  +
Sbjct: 147 AAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  158 bits (401), Expect = 3e-44
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINW 469
            + + FPR   + S E       + L++ LL K+PK+R+G     + E+  H FF  INW
Sbjct: 219 MEEIRFPR---TLSPE------AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  147 bits (374), Expect = 3e-40
 Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 35/187 (18%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           +V ++ F  L+ LG G  G V L + +         +YAMK++ +E +  + ++     E
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKAT-----GRYYAMKILRKEVIIAKDEVAHTVTE 55

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             +L    HPFL  L   F+     C VMEY  GG+L+    R+  + F    A      
Sbjct: 56  SRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERA------ 107

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 RFY AE + ALEYLH   +VYRD+K EN+++ +DGHI 
Sbjct: 108 ----------------------RFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145

Query: 260 LSDFDLS 266
           ++DF L 
Sbjct: 146 ITDFGLC 152

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  158 bits (402), Expect = 4e-44
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              +K+F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF+GE+ ++   +I+
Sbjct: 175 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 234

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINW 469
           +  + +P+   S SKE         +   L+ K+P KR+G   +G  +IK H FF+ I+W
Sbjct: 235 EHNVAYPK---SMSKE------AVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDW 285

Query: 470 ALI--RSIKPPEVPN 482
             +  + I+PP  P 
Sbjct: 286 EKLERKEIQPPYKPK 300

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  141 bits (359), Expect = 4e-38
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 36/192 (18%)

Query: 76  RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHR 135
             + R+ L  F  L  LG G  G V L + +          YA+K++ ++ +     +  
Sbjct: 12  GNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGT-----DELYAVKILKKDVVIQDDDVEC 66

Query: 136 ADMEKVILTMLD-HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
             +EK +L +    PFL  L++ F+       VMEY  GGDL    Q+    RF    A 
Sbjct: 67  TMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHA- 123

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                                       FYAAE  + L +L   GI+YRDLK +NV++  
Sbjct: 124 ---------------------------VFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDS 156

Query: 255 DGHIMLSDFDLS 266
           +GHI ++DF + 
Sbjct: 157 EGHIKIADFGMC 168

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  158 bits (401), Expect = 4e-44
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 13/136 (9%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              + +F GT +Y+APE++    +G AVDWW +GV LYEML G  PF+ EN +     IL
Sbjct: 178 GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAIL 237

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHEFFKGIN 468
              + +P       ++         ++   + KNP  R+GSL   G   I RH FFK I+
Sbjct: 238 NDEVVYPT---WLHED------ATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEID 288

Query: 469 WALI--RSIKPPEVPN 482
           WA +  R I+PP  P 
Sbjct: 289 WAQLNHRQIEPPFRPR 304

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  143 bits (364), Expect = 9e-39
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 36/199 (18%)

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA 128
           E       +  R+G+D+F  +R LG G  G V L +++          YA+KV+ ++ + 
Sbjct: 8   EGNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKET-----GDLYAVKVLKKDVIL 62

Query: 129 IRKKLHRADMEKVILTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
               +     EK IL++  +HPFL  L+  F+       VME+  GGDL    Q+   +R
Sbjct: 63  QDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RR 120

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
           F  + A                            RFYAAE + AL +LH  GI+YRDLK 
Sbjct: 121 FDEARA----------------------------RFYAAEIISALMFLHDKGIIYRDLKL 152

Query: 248 ENVLVREDGHIMLSDFDLS 266
           +NVL+  +GH  L+DF + 
Sbjct: 153 DNVLLDHEGHCKLADFGMC 171

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  159 bits (404), Expect = 6e-44
 Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 17/141 (12%)

Query: 351 NARSKSFVGTHEYLAPEVISGQG-------HGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
             RS   VGT +YL+PE++   G       +G   DWW LGVF YEM YG TPF  ++  
Sbjct: 217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA 276

Query: 404 KTLINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
           +T   I+  K+ L+ P +     +E       +D I +LL   P+ R+G   G+ + + H
Sbjct: 277 ETYGKIVHYKEHLSLPLVDEGVPEEA------RDFIQRLL-CPPETRLGR-GGAGDFRTH 328

Query: 462 EFFKGINWALIRSIKPPEVPN 482
            FF G++W  +R   PP  P+
Sbjct: 329 PFFFGLDWDGLRDSVPPFTPD 349

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  157 bits (400), Expect = 2e-43
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 34/210 (16%)

Query: 57  SHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF 116
           +   + A+   W     +R  + R+  D F +L+ +G G    V + +++          
Sbjct: 34  AQDKYVADFLQWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQT-----GQV 88

Query: 117 YAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL 176
           YAMK++++  +  R ++     E+ +L   D  ++  L+  F+  +Y  LVMEY  GGDL
Sbjct: 89  YAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDL 148

Query: 177 YAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH 236
                +  G+R     A                            RFY AE ++A++ +H
Sbjct: 149 LTLLSKF-GERIPAEMA----------------------------RFYLAEIVMAIDSVH 179

Query: 237 MMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +G V+RD+KP+N+L+   GHI L+DF   
Sbjct: 180 RLGYVHRDIKPDNILLDRCGHIRLADFGSC 209

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  158 bits (402), Expect = 1e-43
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 36/210 (17%)

Query: 61  HKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMK 120
           +  N  +       +    R+  + + +++ +G G  G V L + ++      +  YAMK
Sbjct: 46  NIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST-----RKVYAMK 100

Query: 121 VVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAAR 180
           ++ +  +  R        E+ I+   + P++  L+  F+   Y  +VMEY PGGDL    
Sbjct: 101 LLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM 160

Query: 181 QRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI 240
                       A                            RFY AE +LAL+ +H MG 
Sbjct: 161 SNY---DVPEKWA----------------------------RFYTAEVVLALDAIHSMGF 189

Query: 241 VYRDLKPENVLVREDGHIMLSDFDLSFKCD 270
           ++RD+KP+N+L+ + GH+ L+DF    K +
Sbjct: 190 IHRDVKPDNMLLDKSGHLKLADFGTCMKMN 219

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  154 bits (392), Expect = 3e-42
 Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 17/140 (12%)

Query: 351 NARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
             R  + VGT +Y++PEV+  QG    +G   DWW++GVFLYEML G TPF  ++   T 
Sbjct: 223 MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTY 282

Query: 407 INIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
             I+  K  LTFP      SKE       ++LI   L  + + R+G   G  EIKRH FF
Sbjct: 283 SKIMNHKNSLTFPD-DNDISKE------AKNLICAFL-TDREVRLGR-NGVEEIKRHLFF 333

Query: 465 KGINWA--LIRSIKPPEVPN 482
           K   WA   +R    P VP+
Sbjct: 334 KNDQWAWETLRDTVAPVVPD 353

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  156 bits (395), Expect = 2e-42
 Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++EK    IL
Sbjct: 303 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 362

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINW 469
            + + FPR   +   E       + L+S LL K+PK+R+G   + + EI +H FF GI W
Sbjct: 363 MEEIRFPR---TLGPE------AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 413

Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 414 QHVYEKKLSPPFKPQ 428

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  141 bits (357), Expect = 4e-37
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 36/195 (18%)

Query: 73  RLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK 132
            L + + RV ++ F  L+ LG G  G V L + +         +YAMK++ +E +  + +
Sbjct: 137 SLAKPKHRVTMNEFEYLKLLGKGTFGKVILVKEKAT-----GRYYAMKILKKEVIVAKDE 191

Query: 133 LHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
           +     E  +L    HPFL  L   F+     C VMEY  GG+L+    R+  + F    
Sbjct: 192 VAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDR 249

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPENVL 251
           A                            RFY AE + AL+YLH    +VYRDLK EN++
Sbjct: 250 A----------------------------RFYGAEIVSALDYLHSEKNVVYRDLKLENLM 281

Query: 252 VREDGHIMLSDFDLS 266
           + +DGHI ++DF L 
Sbjct: 282 LDKDGHIKITDFGLC 296

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  153 bits (389), Expect = 2e-42
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 18/141 (12%)

Query: 351 NARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI- 407
             R+  F GT EY+AP+++ G   GH  AVDWW+LGV +YE+L G +PF  +  + +   
Sbjct: 214 TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE 273

Query: 408 ---NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEF 463
               ILK    +P+     S         +DLI +LL+K+PKKR+G     + EIK H F
Sbjct: 274 ISRRILKSEPPYPQ---EMSAL------AKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF 324

Query: 464 FKGINWALI--RSIKPPEVPN 482
           F+ INW  +  + +  P  P 
Sbjct: 325 FQKINWDDLAAKKVPAPFKPV 345

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  144 bits (365), Expect = 5e-39
 Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 34/232 (14%)

Query: 37  RRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGD 96
                   S  AA  ++                    L     +VG+++F LL+ LG+G 
Sbjct: 7   HHEEEGGSSGGAAGTSADGGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGA 66

Query: 97  IGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK-LHRADMEKVILTMLDH-PFLPTL 154
            G V+L   R          YAMKV+ +  +  + K       E+ +L  +   PFL TL
Sbjct: 67  YGKVFLV--RKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTL 124

Query: 155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTD 214
           +  F+      L+++Y  GG+L+    ++  +RF                          
Sbjct: 125 HYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEV--------------------- 161

Query: 215 VTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                  + Y  E +LALE+LH +GI+YRD+K EN+L+  +GH++L+DF LS
Sbjct: 162 -------QIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  155 bits (394), Expect = 2e-42
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 15/139 (10%)

Query: 351 NARSKSFVGTHEYLAPEVISGQ-----GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             +S   VGT +Y++PE++         +G   DWW+LGV +YEMLYG TPF  E+  +T
Sbjct: 230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET 289

Query: 406 LINIL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
              I+  K+   FP      S+        +DLI +L+  + + R+G   G  + K+H F
Sbjct: 290 YGKIMNHKERFQFPTQVTDVSEN------AKDLIRRLI-CSREHRLGQ-NGIEDFKKHPF 341

Query: 464 FKGINWALIRSIKPPEVPN 482
           F GI+W  IR+ + P +P 
Sbjct: 342 FSGIDWDNIRNCEAPYIPE 360

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  150 bits (380), Expect = 2e-40
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 34/189 (17%)

Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
           Q R+  + F +L+ +G G  G V + +++N         +AMK++++  +  R +     
Sbjct: 68  QMRLHREDFEILKVIGRGAFGEVAVVKLKNA-----DKVFAMKILNKWEMLKRAETACFR 122

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
            E+ +L   D  ++ TL+  F+  +   LVM+Y  GGDL     +    R     A    
Sbjct: 123 EERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFED-RLPEEMA---- 177

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                                   RFY AE ++A++ +H +  V+RD+KP+N+L+  +GH
Sbjct: 178 ------------------------RFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGH 213

Query: 258 IMLSDFDLS 266
           I L+DF   
Sbjct: 214 IRLADFGSC 222

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  153 bits (388), Expect = 3e-42
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 14/134 (10%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +A++ +F GT +Y+APE++ GQ +  +VDWW+ GV LYEML G +PF G++ E+   +I 
Sbjct: 172 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 231

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA 470
                +PR      KE       +DL+ KL V+ P+KR+G      +I++H  F+ INW 
Sbjct: 232 MDNPFYPR---WLEKE------AKDLLVKLFVREPEKRLGVRG---DIRQHPLFREINWE 279

Query: 471 LI--RSIKPPEVPN 482
            +  + I PP  P 
Sbjct: 280 ELERKEIDPPFRPK 293

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  142 bits (361), Expect = 2e-38
 Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 36/199 (18%)

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA 128
           E  K     Q ++ ++ F L + LG G  G V+L + +         F+A+K + ++ + 
Sbjct: 2   ELNKERPSLQIKLKIEDFILHKMLGKGSFGKVFLAEFKKT-----NQFFAIKALKKDVVL 56

Query: 129 IRKKLHRADMEKVILTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
           +   +    +EK +L++  +HPFL  ++  F+       VMEY  GGDL    Q     +
Sbjct: 57  MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HK 114

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
           F +S A                             FYAAE +L L++LH  GIVYRDLK 
Sbjct: 115 FDLSRA----------------------------TFYAAEIILGLQFLHSKGIVYRDLKL 146

Query: 248 ENVLVREDGHIMLSDFDLS 266
           +N+L+ +DGHI ++DF + 
Sbjct: 147 DNILLDKDGHIKIADFGMC 165

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  156 bits (395), Expect = 3e-41
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
              +K+F GT +Y+APE+I+ Q +G +VDWW  GV LYEML G  PF+GE+ ++   +I+
Sbjct: 496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 555

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS-LKGSVEIKRHEFFKGINW 469
           +  + +P+   S SKE         +   L+ K+P KR+G   +G  +IK H FF+ I+W
Sbjct: 556 EHNVAYPK---SMSKE------AVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDW 606

Query: 470 ALI--RSIKPPEVPN 482
             +  + I+PP  P 
Sbjct: 607 EKLERKEIQPPYKPK 621

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  143 bits (361), Expect = 1e-36
 Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 36/261 (13%)

Query: 7   TNESDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQA 66
            +E           +         N+      S  +       ++  +    K  +   A
Sbjct: 264 ISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPEEKTA 323

Query: 67  AWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA 126
              +       + R+ L  F  L  LG G  G V L + +          YA+K++ ++ 
Sbjct: 324 NTISKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGT-----DELYAVKILKKDV 378

Query: 127 LAIRKKLHRADMEKVIL-TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPG 185
           +     +    +EK +L      PFL  L++ F+       VMEY  GGDL    Q+   
Sbjct: 379 VIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-- 436

Query: 186 KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL 245
            RF    A                             FYAAE  + L +L   GI+YRDL
Sbjct: 437 GRFKEPHA----------------------------VFYAAEIAIGLFFLQSKGIIYRDL 468

Query: 246 KPENVLVREDGHIMLSDFDLS 266
           K +NV++  +GHI ++DF + 
Sbjct: 469 KLDNVMLDSEGHIKIADFGMC 489

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  149 bits (378), Expect = 8e-41
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF---------KGEN 401
              + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF             
Sbjct: 164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 223

Query: 402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIK 459
            +     IL+K +  PR   S S +         ++   L K+PK+R+G     G  +I+
Sbjct: 224 EDYLFQVILEKQIRIPR---SLSVK------AASVLKSFLNKDPKERLGCHPQTGFADIQ 274

Query: 460 RHEFFKGINWALI--RSIKPPEVPN 482
            H FF+ ++W ++  + + PP  PN
Sbjct: 275 GHPFFRNVDWDMMEQKQVVPPFKPN 299

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  145 bits (369), Expect = 1e-39
 Identities = 63/191 (32%), Positives = 88/191 (46%), Gaps = 36/191 (18%)

Query: 77  AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA 136
           A   +GL  F LLR +G G    V L +++          YAMKVV +E +   + +   
Sbjct: 2   AMDPLGLQDFDLLRVIGRGSYAKVLLVRLKKT-----DRIYAMKVVKKELVNDDEDIDWV 56

Query: 137 DMEKVILTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF 195
             EK +     +HPFL  L++ F+       V+EY  GGDL    QRQ  ++     A  
Sbjct: 57  QTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHA-- 112

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                                     RFY+AE  LAL YLH  GI+YRDLK +NVL+  +
Sbjct: 113 --------------------------RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSE 146

Query: 256 GHIMLSDFDLS 266
           GHI L+D+ + 
Sbjct: 147 GHIKLTDYGMC 157

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  149 bits (379), Expect = 1e-40
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 35/189 (18%)

Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
              V  DHF +LR +G G  G V + Q  +      +  YAMK ++++    R ++    
Sbjct: 9   NEDVNFDHFEILRAIGKGSFGKVCIVQKNDT-----KKMYAMKYMNKQKCVERNEVRNVF 63

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
            E  I+  L+HPFL  L+  F+      +V++   GGDL    Q+     F   +     
Sbjct: 64  KELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETV---- 117

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                                   + +  E ++AL+YL    I++RD+KP+N+L+ E GH
Sbjct: 118 ------------------------KLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGH 153

Query: 258 IMLSDFDLS 266
           + ++DF+++
Sbjct: 154 VHITDFNIA 162

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  149 bits (379), Expect = 1e-40
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 20/142 (14%)

Query: 351 NARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFKG---ENNEK 404
             +  +  GT  Y+APE+ S   G G+  AVDWW+LGV  YE+L G  P+      ++++
Sbjct: 168 ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKE 227

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
            +       +T+P    S          +  L+ KLL  NP +R   L    +++   + 
Sbjct: 228 IVHTFETTVVTYPS-AWSQE--------MVSLLKKLLEPNPDQRFSQLS---DVQNFPYM 275

Query: 465 KGINWALI--RSIKPPEVPNND 484
             INW  +  + + P  +PN  
Sbjct: 276 NDINWDAVFQKRLIPGFIPNKG 297

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  152 bits (386), Expect = 2e-40
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
             ++K + GT  ++APE++ G+ +  +VD++ LGV LYEM+    PF+       N++  
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFK 465
             +L++ +T+P      S         +D    LL K+P+KR+G        ++ H  F+
Sbjct: 403 QRVLEQAVTYPD---KFSPA------SKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFR 453

Query: 466 GINWALI--RSIKPPEVPN-NDLYCK 488
            I+W  +    + PP VP+   +Y K
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAK 479

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  151 bits (382), Expect = 6e-40
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 31/187 (16%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            +G D F   R LG G  G V+ CQ++          YA K ++++ L  RK    A +E
Sbjct: 181 PMGEDWFLDFRVLGRGGFGEVFACQMKAT-----GKLYACKKLNKKRLKKRKGYQGAMVE 235

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           K IL  +   F+ +L   FE     CLVM    GGD+                     + 
Sbjct: 236 KKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDI--------------------RYH 275

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           ++    +N GF            FY A+ +  LE+LH   I+YRDLKPENVL+ +DG++ 
Sbjct: 276 IYNVDEDNPGFQEPRA------IFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVR 329

Query: 260 LSDFDLS 266
           +SD  L+
Sbjct: 330 ISDLGLA 336

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  148 bits (375), Expect = 5e-40
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF---------KGEN 401
              + +F GT  Y+APE++ G+ +G +VDWW LGV ++EM+ G +PF             
Sbjct: 207 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 266

Query: 402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIK 459
            +     IL+K +  PR   S S +         ++   L K+PK+R+G     G  +I+
Sbjct: 267 EDYLFQVILEKQIRIPR---SLSVK------AASVLKSFLNKDPKERLGCHPQTGFADIQ 317

Query: 460 RHEFFKGINWALI--RSIKPPEVPN 482
            H FF+ ++W ++  + + PP  PN
Sbjct: 318 GHPFFRNVDWDMMEQKQVVPPFKPN 342

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  145 bits (368), Expect = 5e-39
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 36/192 (18%)

Query: 76  RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHR 135
           +A   +GL  F LLR +G G    V L +++          YAM+VV +E +   + +  
Sbjct: 44  KASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKT-----DRIYAMRVVKKELVNDDEDIDW 98

Query: 136 ADMEKVILTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
              EK +     +HPFL  L++ F+       V+EY  GGDL    QRQ  ++     A 
Sbjct: 99  VQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHA- 155

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                                      RFY+AE  LAL YLH  GI+YRDLK +NVL+  
Sbjct: 156 ---------------------------RFYSAEISLALNYLHERGIIYRDLKLDNVLLDS 188

Query: 255 DGHIMLSDFDLS 266
           +GHI L+D+ + 
Sbjct: 189 EGHIKLTDYGMC 200

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  151 bits (383), Expect = 7e-40
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN----NEKTL 406
               K  VGT  Y+APEV+  + +  + DWW LG  LYEM+ G +PF+        E+  
Sbjct: 339 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFK 465
             + + P  +       S +       + L S+LL K+P +R+G     + E+K H  FK
Sbjct: 399 RLVKEVPEEYSE---RFSPQ------ARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFK 449

Query: 466 GINWALI--RSIKPPEVPN-NDLYCK 488
            +N+  +    ++PP  P+   +YCK
Sbjct: 450 KLNFKRLGAGMLEPPFKPDPQAIYCK 475

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  150 bits (380), Expect = 2e-39
 Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            V  + FR  R LG G  G V  CQ+R          YA K ++++ +  RK    A  E
Sbjct: 180 PVTKNTFRQYRVLGKGGFGEVCACQVRAT-----GKMYACKKLEKKRIKKRKGEAMALNE 234

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           K IL  ++  F+ +L   +E     CLV+    GGDL           F  + A      
Sbjct: 235 KQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARA------ 288

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                  FYAAE    LE LH   IVYRDLKPEN+L+ + GHI 
Sbjct: 289 ----------------------VFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIR 326

Query: 260 LSDFDLS 266
           +SD  L+
Sbjct: 327 ISDLGLA 333

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  150 bits (381), Expect = 3e-39
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 16/141 (11%)

Query: 348 EPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L G +PF+    +   
Sbjct: 341 DFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH 400

Query: 407 I---NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHE 462
                 L   +  P    S S E      L+ L+  LL ++  +R+G L +G+ E+K   
Sbjct: 401 EIDRMTLTMAVELPD---SFSPE------LRSLLEGLLQRDVNRRLGCLGRGAQEVKESP 451

Query: 463 FFKGINWALI--RSIKPPEVP 481
           FF+ ++W ++  +   PP +P
Sbjct: 452 FFRSLDWQMVFLQKYPPPLIP 472

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  148 bits (376), Expect = 1e-38
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 38/192 (19%)

Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
              + ++ F + R +G G  G VY C+  +         YAMK +D++ + +++    A 
Sbjct: 183 NIHLTMNDFSVHRIIGRGGFGEVYGCRKADT-----GKMYAMKCLDKKRIKMKQGETLAL 237

Query: 138 MEKVILTML---DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
            E+++L+++   D PF+  +   F        +++   GGDL                  
Sbjct: 238 NERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL------------------ 279

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                  +    +  F   D+      RFYAAE +L LE++H   +VYRDLKP N+L+ E
Sbjct: 280 ------HYHLSQHGVFSEADM------RFYAAEIILGLEHMHNRFVVYRDLKPANILLDE 327

Query: 255 DGHIMLSDFDLS 266
            GH+ +SD  L+
Sbjct: 328 HGHVRISDLGLA 339

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  135 bits (341), Expect = 4e-36
 Identities = 92/416 (22%), Positives = 135/416 (32%), Gaps = 147/416 (35%)

Query: 75  RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH 134
             +   V L+ + L   +G G  G V L    N         YAMKV+ ++ L  +    
Sbjct: 4   GSSGDCVQLNQYTLKDEIGKGSYGVVKLA--YNENDNTY---YAMKVLSKKKLIRQAGFP 58

Query: 135 RAD------------------MEKV-----ILTMLDHPFLPTLY--AEFEASHYSCLVME 169
           R                    +E+V     IL  LDHP +  L    +     +  +V E
Sbjct: 59  RRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFE 118

Query: 170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL 229
               G +         K      A                            RFY  + +
Sbjct: 119 LVNQGPVMEVPTL---KPLSEDQA----------------------------RFYFQDLI 147

Query: 230 LALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYE 289
             +EYLH   I++RD+KP N+LV EDGHI ++DF +S +      LL             
Sbjct: 148 KGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLS------------ 195

Query: 290 KCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEP 349
                +  TP       F +                                 PE     
Sbjct: 196 ----NTVGTP------AFMA---------------------------------PES---- 208

Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           ++   K F G                 A+D W +GV LY  ++G  PF  E        I
Sbjct: 209 LSETRKIFSG----------------KALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKI 252

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             + L FP     +         L+DLI+++L KNP+ RI  +    EIK H +  
Sbjct: 253 KSQALEFPDQPDIAE-------DLKDLITRMLDKNPESRI-VVP---EIKLHPWVT 297

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  133 bits (336), Expect = 3e-35
 Identities = 62/376 (16%), Positives = 117/376 (31%), Gaps = 116/376 (30%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           +   H+  +++LG G    V L +  +        FYA+K +       ++    A  E 
Sbjct: 26  IDNKHYLFIQKLGEGGFSYVDLVEGLHD-----GHFYALKRIL---CHEQQDREEAQREA 77

Query: 141 VILTMLDHPFLPTLYAEF----EASHYSCLVMEYCPGGDLYAA--RQRQPGKRFGISSAK 194
            +  + +HP +  L A       A H + L++ +   G L+    R +  G         
Sbjct: 78  DMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQIL 137

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
           ++                                   LE +H  G  +RDLKP N+L+ +
Sbjct: 138 WLL----------------------------LGICRGLEAIHAKGYAHRDLKPTNILLGD 169

Query: 255 DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK 314
           +G  +L D     +  +  +  R  L+ +  +   +    S   P               
Sbjct: 170 EGQPVLMDLGSMNQACIHVEGSRQALTLQ--DWAAQRCTISYRAP--------------- 212

Query: 315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH 374
                        E      H              I+ R+                    
Sbjct: 213 -------------ELFSVQSHC------------VIDERT-------------------- 227

Query: 375 GSAVDWWTLGVFLYEMLYGTTPFKGEN-NEKTLINILKKPLTFPRIGVSSSKEFEEVVKL 433
               D W+LG  LY M++G  P+        ++   ++  L+ P+    SS        L
Sbjct: 228 ----DVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSS-------AL 276

Query: 434 QDLISKLLVKNPKKRI 449
             L++ ++  +P +R 
Sbjct: 277 WQLLNSMMTVDPHQRP 292

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  129 bits (327), Expect = 3e-34
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 35/192 (18%)

Query: 75  RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH 134
              + +  +D F + R LG G  GNVYL + +       +   A+KV+ +  L      H
Sbjct: 5   EMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQN-----KFIMALKVLFKSQLEKEGVEH 59

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           +   E  I + L HP +  +Y  F       L++E+ P G+LY   Q+    RF    + 
Sbjct: 60  QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRS- 116

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                                        +  E   AL Y H   +++RD+KPEN+L+  
Sbjct: 117 ---------------------------ATFMEELADALHYCHERKVIHRDIKPENLLMGY 149

Query: 255 DGHIMLSDFDLS 266
            G + ++DF  S
Sbjct: 150 KGELKIADFGWS 161

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  127 bits (321), Expect = 2e-33
 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 17/138 (12%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
               + R ++  GT +YL PE+I G+ H   VD W  GV  YE L G  PF   ++ +T 
Sbjct: 162 VHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETH 221

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
             I+   L FP   +S           +DLISKLL  +P +R+        +  H + K 
Sbjct: 222 RRIVNVDLKFPP-FLSDG--------SKDLISKLLRYHPPQRL----PLKGVMEHPWVK- 267

Query: 467 INWALIRSIKPPEVPNND 484
              A  R + PP   +  
Sbjct: 268 ---ANSRRVLPPVYQSTQ 282

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  127 bits (321), Expect = 2e-33
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 35/189 (18%)

Query: 78  QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD 137
           + +  L+ F + R LG G  GNVYL   R           A+KV+ +  L      H+  
Sbjct: 3   KRQWALEDFEIGRPLGKGKFGNVYLA--REKQSKF---ILALKVLFKAQLEKAGVEHQLR 57

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
            E  I + L HP +  LY  F  +    L++EY P G +Y   Q+    +F         
Sbjct: 58  REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRT---- 111

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                                     Y  E   AL Y H   +++RD+KPEN+L+   G 
Sbjct: 112 ------------------------ATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 147

Query: 258 IMLSDFDLS 266
           + ++DF  S
Sbjct: 148 LKIADFGWS 156

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  123 bits (311), Expect = 5e-32
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
               ++R     GT +YL PE+I G+ H   VD W+LGV  YE L G  PF+    ++T 
Sbjct: 157 VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 216

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             I +   TFP   V+           +DLIS+LL  NP +R        E+  H +  
Sbjct: 217 KRISRVEFTFPD-FVTEG--------ARDLISRLLKHNPSQRP----MLREVLEHPWIT 262

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  123 bits (311), Expect = 2e-31
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 351 NARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI- 407
           + + K   GT+E++ PE  S +   +G+ VD W+LG+ LY M Y   PF  + +   L  
Sbjct: 204 DKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFN 263

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVK----------LQDLISKLLVKNPKKRIGSLKGSVE 457
           NI  K + +P                           D +   L KNP +RI     S +
Sbjct: 264 NIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERI----TSED 319

Query: 458 IKRHEFFKGINWALIRSIK 476
             +HE+    N   +R   
Sbjct: 320 ALKHEWLADTNIEDLREFS 338

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  118 bits (298), Expect = 9e-30
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 56/213 (26%)

Query: 75  RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH 134
              +    ++ +R++R L  G    + LC+  N        FYA+K  ++  L  ++   
Sbjct: 22  YVKEKDKYINDYRIIRTLNQGKFNKIILCEKDNK-------FYALKKYEKSLLEKKRDFT 74

Query: 135 RADMEKV--------------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY--- 177
           +++ +K+              I+T + + +  T            ++ EY     +    
Sbjct: 75  KSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFD 134

Query: 178 ---AARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY 234
                  +       I                               +      L +  Y
Sbjct: 135 EYFFVLDKNYTCFIPIQVI----------------------------KCIIKSVLNSFSY 166

Query: 235 LHM-MGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           +H    I +RD+KP N+L+ ++G + LSDF  S
Sbjct: 167 IHNEKNICHRDVKPSNILMDKNGRVKLSDFGES 199

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  118 bits (299), Expect = 4e-30
 Identities = 51/255 (20%), Positives = 78/255 (30%), Gaps = 54/255 (21%)

Query: 12  YDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAM 71
           +   SS + +   +  F S      RR S     +S   Q+  Y+  +P           
Sbjct: 4   HHHHSSGVDLGTENLYFQSMHQLQPRRVSFRG-EASETLQSPGYDPSRPES--------- 53

Query: 72  KRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK 131
                         F+ L RLG G  G V+  + +          YA+K         + 
Sbjct: 54  ---------FFQQSFQRLSRLGHGSYGEVFKVRSK-----EDGRLYAVKRSMSPFRGPKD 99

Query: 132 KLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGIS 191
           +  +         +  HP    L   +E      L  E C G  L    +   G     +
Sbjct: 100 RARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAW-GASLPEA 157

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
                                           Y  +TLLAL +LH  G+V+ D+KP N+ 
Sbjct: 158 QV----------------------------WGYLRDTLLALAHLHSQGLVHLDVKPANIF 189

Query: 252 VREDGHIMLSDFDLS 266
           +   G   L DF L 
Sbjct: 190 LGPRGRCKLGDFGLL 204

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
               +   G   Y+APE++ G  +G+A D ++LG+ + E+        G    + L    
Sbjct: 210 AGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGY 268

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             P     +    S E       + ++  +L  +PK R      +  +      +
Sbjct: 269 LPPEFTAGL----SSEL------RSVLVMMLEPDPKLRA----TAEALLALPVLR 309

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  119 bits (300), Expect = 5e-30
 Identities = 48/242 (19%), Positives = 81/242 (33%), Gaps = 24/242 (9%)

Query: 54  LYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLP 113
           +++ H      +  +     L   Q       + L   +G G  G V +           
Sbjct: 1   MHHHHHHSSGRENLYFQGGSLLELQ-----KKYHLKGAIGQGSYGVVRVAIENQT----- 50

Query: 114 QCFYAMKVVDREALAIRKKLHRADM--EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYC 171
           +   A+K++++  +          +  E  ++  L HP +  LY  +E   Y CLVME C
Sbjct: 51  RAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELC 110

Query: 172 PGGDLY---AARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRF---YA 225
            GG L             +  +   K             +           ++       
Sbjct: 111 HGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLI 170

Query: 226 AET----LLALEYLHMMGIVYRDLKPENVLV--REDGHIMLSDFDLSFKCDVVPKLLRPK 279
           +        AL YLH  GI +RD+KPEN L    +   I L DF LS +   +       
Sbjct: 171 SNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYG 230

Query: 280 LS 281
           ++
Sbjct: 231 MT 232

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 96.1 bits (239), Expect = 5e-22
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGH--GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
            +  GT  ++APEV++      G   D W+ GV L+ +L G  PF G N+  T+  +L K
Sbjct: 232 TTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNK 291

Query: 413 PLTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            L F       +  +  +    +DL+S LL +N  +R      ++   +H +  
Sbjct: 292 KLCFE------NPNYNVLSPLARDLLSNLLNRNVDERF----DAMRALQHPWIS 335

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  112 bits (282), Expect = 6e-28
 Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 51/197 (25%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
              F  +  LG G  G V   +       L   +YA+K +        +KL     E ++
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNA-----LDSRYYAIKKIRHT----EEKLSTILSEVML 55

Query: 143 LTMLDHPFLPTLYAEF-------------EASHYSCLVMEYCPGGDLYAARQRQPGKRFG 189
           L  L+H ++   YA +             +      + MEYC  G LY            
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDL---------- 105

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           I S                     D      Y     + L AL Y+H  GI++RDLKP N
Sbjct: 106 IHSENL--------------NQQRDE-----YWRLFRQILEALSYIHSQGIIHRDLKPMN 146

Query: 250 VLVREDGHIMLSDFDLS 266
           + + E  ++ + DF L+
Sbjct: 147 IFIDESRNVKIGDFGLA 163

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  106 bits (267), Expect = 6e-26
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 334 HHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLY 392
           H   ++L          +    S +GT  Y+A EV+ G GH    +D ++LG+  +EM+Y
Sbjct: 167 HRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY 226

Query: 393 GTTPFKGENNEKTLINILKKPLTFP-RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
                 G      L  +    + FP     +  K        + +I  L+  +P KR   
Sbjct: 227 P--FSTGMERVNILKKLRSVSIEFPPDFDDNKMKVE------KKIIRLLIDHDPNKRP-- 276

Query: 452 LKGSVEIKRHEFFK 465
             G+  +    +  
Sbjct: 277 --GARTLLNSGWLP 288

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  111 bits (280), Expect = 3e-27
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 34/198 (17%)

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA 128
             +           ++ +  L+++G G  G   L +            Y +K ++   ++
Sbjct: 9   SGVDLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTED-----GRQYVIKEINISRMS 63

Query: 129 IRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRF 188
             K+   +  E  +L  + HP +      FE +    +VM+YC GGDL+     Q G  F
Sbjct: 64  -SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLF 122

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE 248
                  +                           +  +  LAL+++H   I++RD+K +
Sbjct: 123 ---QEDQI-------------------------LDWFVQICLALKHVHDRKILHRDIKSQ 154

Query: 249 NVLVREDGHIMLSDFDLS 266
           N+ + +DG + L DF ++
Sbjct: 155 NIFLTKDGTVQLGDFGIA 172

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           ++ +GT  YL+PE+   + + +  D W LG  LYE+      F+  + +  ++ I+    
Sbjct: 183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGS- 241

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS 474
            FP + +  S +      L+ L+S+L  +NP+ R  S+     I    F        I  
Sbjct: 242 -FPPVSLHYSYD------LRSLVSQLFKRNPRDRP-SVN---SILEKGFIA----KRIEK 286

Query: 475 IKPPEVPNNDLYCKIKKKVYVPKLSKQERDAP 506
              P++   +   K   K     +  +   + 
Sbjct: 287 FLSPQLIAEEFCLKTFSKFGSQPIPAKRPASG 318

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  107 bits (270), Expect = 2e-26
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
              +  + +  +  GT  Y++PE+ +   HG   D W+LG   Y +L G  PF  +  + 
Sbjct: 160 TQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN 219

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           TL  ++      P   +S           +DLI +LL +NP  R+ SL     +  H F 
Sbjct: 220 TLNKVVLADYEMPS-FLSIE--------AKDLIHQLLRRNPADRL-SLS---SVLDHPFM 266

Query: 465 K 465
            
Sbjct: 267 S 267

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  100 bits (252), Expect = 5e-24
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 34/184 (18%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           ++ F++   LG G    VY     +   GL     A+K++D++A+     + R   E  I
Sbjct: 10  IEDFKVGNLLGKGSFAGVYR--AESIHTGLE---VAIKMIDKKAMYKAGMVQRVQNEVKI 64

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
              L HP +  LY  FE S+Y  LV+E C  G++    + +  K F  + A         
Sbjct: 65  HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNR-VKPFSENEA--------- 114

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                              R +  + +  + YLH  GI++RDL   N+L+  + +I ++D
Sbjct: 115 -------------------RHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIAD 155

Query: 263 FDLS 266
           F L+
Sbjct: 156 FGLA 159

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  107 bits (269), Expect = 7e-26
 Identities = 32/206 (15%), Positives = 54/206 (26%), Gaps = 39/206 (18%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           ++G     +   LG G    VY     +      +  + +KV          + +     
Sbjct: 61  QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQL 117

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
              L           Y+     + S LV E    G L                       
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTL----------------------- 154

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR------ 253
                 N        V        +A   L  +E +H   I++ D+KP+N ++       
Sbjct: 155 --LNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQ 212

Query: 254 -----EDGHIMLSDFDLSFKCDVVPK 274
                    + L D   S    + PK
Sbjct: 213 DDEDDLSAGLALIDLGQSIDMKLFPK 238

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 73.5 bits (180), Expect = 3e-14
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P      +   T  +   E++S +     +D++ +   +Y ML+GT         +    
Sbjct: 237 PKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPE 296

Query: 409 ILKKPLTFPRI---------GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI 458
            L + L    +          +        +  L+  + K+  ++   +I +L+  + +
Sbjct: 297 GLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYTNKIRALRNRLIV 355

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  106 bits (266), Expect = 9e-26
 Identities = 45/200 (22%), Positives = 71/200 (35%), Gaps = 35/200 (17%)

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA 128
           +  K LR   G   L +FR+ +++G G    VY                A+K V    L 
Sbjct: 17  QPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLD-----GVPVALKKVQIFDLM 71

Query: 129 IRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA--RQRQPGK 186
             K       E  +L  L+HP +   YA F   +   +V+E    GDL       ++  +
Sbjct: 72  DAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKR 131

Query: 187 RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK 246
                  + V                           Y  +   ALE++H   +++RD+K
Sbjct: 132 LI---PERTV-------------------------WKYFVQLCSALEHMHSRRVMHRDIK 163

Query: 247 PENVLVREDGHIMLSDFDLS 266
           P NV +   G + L D  L 
Sbjct: 164 PANVFITATGVVKLGDLGLG 183

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN-NEKTLIN-ILKK 412
            S VGT  Y++PE I   G+    D W+LG  LYEM    +PF G+  N  +L   I + 
Sbjct: 194 HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC 253

Query: 413 PLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKR 448
              +P +     S+E      L+ L++  +  +P+KR
Sbjct: 254 D--YPPLPSDHYSEE------LRQLVNMCINPDPEKR 282

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  106 bits (267), Expect = 4e-25
 Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 50/194 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D + + + LGSG  G V L   R           A++++ +   AI           V  
Sbjct: 135 DEYIMSKTLGSGACGEVKLAFERKT--CKK---VAIRIISKRKFAIGSAREADPALNVET 189

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              IL  L+HP +  +   F+A  Y  +V+E   GG+L+           KR   ++ K 
Sbjct: 190 EIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGN-----KRLKEATCKL 243

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-- 253
            F+ +                            LLA++YLH  GI++RDLKPENVL+   
Sbjct: 244 YFYQM----------------------------LLAVQYLHENGIIHRDLKPENVLLSSQ 275

Query: 254 -EDGHIMLSDFDLS 266
            ED  I ++DF  S
Sbjct: 276 EEDCLIKITDFGHS 289

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 355 KSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN-IL 410
           ++  GT  YLAPEV+      G+  AVD W+LGV L+  L G  PF     + +L + I 
Sbjct: 299 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT 358

Query: 411 KKPLTFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
                F        + + EV +   DL+ KLLV +PK R  + +   E  RH + + 
Sbjct: 359 SGKYNFI------PEVWAEVSEKALDLVKKLLVVDPKARF-TTE---EALRHPWLQD 405

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  104 bits (261), Expect = 5e-25
 Identities = 54/409 (13%), Positives = 112/409 (27%), Gaps = 122/409 (29%)

Query: 70  AMKRLRRAQGRVGLDH----FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE 125
           A+KR+R     +  +      + L +L    I   +   +  P     +    + + D  
Sbjct: 35  AIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDES 94

Query: 126 A---LAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQR 182
               L+    +    ++   +                   Y  + M+ C   +L     R
Sbjct: 95  TDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNR 154

Query: 183 QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY 242
           +                                           +   A+E+LH  G+++
Sbjct: 155 RCSLEDREHG---------------------------VCLHIFIQIAEAVEFLHSKGLMH 187

Query: 243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQP 302
           RDLKP N+    D  + + DF L                                T M  
Sbjct: 188 RDLKPSNIFFTMDDVVKVGDFGL-------------------------------VTAMDQ 216

Query: 303 VLSCFSSVSHGKKNKKKAVTVTTIR----EQVDGDHHDQELLDDPEVVAEPINARSKSFV 358
                + ++           V T      EQ+ G+++  +                    
Sbjct: 217 DEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHK-------------------- 256

Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
                              VD ++LG+ L+E+LY    F  +     +I  ++    FP 
Sbjct: 257 -------------------VDIFSLGLILFELLY---SFSTQMERVRIITDVRNL-KFPL 293

Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
           +      +         ++  +L  +P +R      + +I  +  F+ +
Sbjct: 294 LFTQKYPQ------EHMMVQDMLSPSPTERP----EATDIIENAIFENL 332

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  103 bits (258), Expect = 1e-24
 Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 50/194 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D + + + LGSG  G V L   R           A+K++ +   AI           V  
Sbjct: 10  DEYIMSKTLGSGACGEVKLAFERKT-----CKKVAIKIISKRKFAIGSAREADPALNVET 64

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              IL  L+HP +  +   F+A  Y  +V+E   GG+L+      +     R   ++ K 
Sbjct: 65  EIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNK-----RLKEATCKL 118

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-- 253
            F+ +                            LLA++YLH  GI++RDLKPENVL+   
Sbjct: 119 YFYQM----------------------------LLAVQYLHENGIIHRDLKPENVLLSSQ 150

Query: 254 -EDGHIMLSDFDLS 266
            ED  I ++DF  S
Sbjct: 151 EEDCLIKITDFGHS 164

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 355 KSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI-NIL 410
           ++  GT  YLAPEV+      G+  AVD W+LGV L+  L G  PF     + +L   I 
Sbjct: 174 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT 233

Query: 411 KKPLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
                F        + + EV       DL+ KLLV +PK R      + E  RH + +  
Sbjct: 234 SGKYNFI------PEVWAEVSEKAL--DLVKKLLVVDPKARF----TTEEALRHPWLQDE 281

Query: 468 NWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDA 505
           +          E   +    ++  +    +   +E +A
Sbjct: 282 DMKRKFQDLLSEENESTALPQVLAQPSTSRKRPREGEA 319

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  101 bits (253), Expect = 3e-24
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 43/193 (22%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
            + + +L  +G+G  G     + ++            K +D  ++    +      E  +
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSD-----GKILVWKELDYGSMT-EAEKQMLVSEVNL 58

Query: 143 LTMLDHPFLPTLYAEF--EASHYSCLVMEYCPGGDLYAA--RQRQPGKRFGISSAKFVFF 198
           L  L HP +   Y       +    +VMEYC GGDL +   +  +  +       +FV  
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYL---DEEFV-- 113

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-----MMGIVYRDLKPENVLVR 253
                                       +  LAL+  H        +++RDLKP NV + 
Sbjct: 114 -----------------------LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD 150

Query: 254 EDGHIMLSDFDLS 266
              ++ L DF L+
Sbjct: 151 GKQNVKLGDFGLA 163

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+FVGT  Y++PE ++   +    D W+LG  LYE+     PF   + ++    I +   
Sbjct: 174 KTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGK- 232

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
            F RI    S E      L ++I+++L      R      SV EI  +    
Sbjct: 233 -FRRIPYRYSDE------LNEIITRMLNLKDYHRP-----SVEEILENPLIL 272

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  102 bits (255), Expect = 4e-24
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 40/189 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             + L   LG G   NV+    R+   G     +A+KV +  +    + +     E  +L
Sbjct: 9   HLWLLSDILGQGATANVFRG--RHKKTGDL---FAIKVFNNISF--LRPVDVQMREFEVL 61

Query: 144 TMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
             L+H  +  L+A  E   + +  L+ME+CP G LY     +P   +G+  ++F      
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLY-TVLEEPSNAYGLPESEF------ 114

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR----EDGH 257
                                    + +  + +L   GIV+R++KP N++          
Sbjct: 115 --------------------LIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSV 154

Query: 258 IMLSDFDLS 266
             L+DF  +
Sbjct: 155 YKLTDFGAA 163

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 28/124 (22%)

Query: 355 KSFVGTHEYLAPEVISG--------QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            S  GT EYL P++           + +G+ VD W++GV  Y    G+ PF+     +  
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN 232

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQ--------------------DLISKLLVKNPK 446
             ++ K +T    G  S  +  E   +                      +++ +L  + +
Sbjct: 233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQE 292

Query: 447 KRIG 450
           K  G
Sbjct: 293 KCWG 296

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  100 bits (252), Expect = 6e-24
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K   + P+
Sbjct: 177 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK 236

Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             ++             LI K+L  +P  R  ++    E+   EFF 
Sbjct: 237 -HINPV--------AASLIQKMLQTDPTARP-TIN---ELLNDEFFT 270

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 35/184 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
              +   R LG G     +   I +         +A K+V +  L    +  +  ME  I
Sbjct: 14  RRRYVRGRFLGKGGFAKCFE--ISDADTKEV---FAGKIVPKSLLLKPHQREKMSMEISI 68

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
              L H  +   +  FE + +  +V+E C    L    +R+  K      A         
Sbjct: 69  HRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEA--------- 117

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                              R+Y  + +L  +YLH   +++RDLK  N+ + ED  + + D
Sbjct: 118 -------------------RYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGD 158

Query: 263 FDLS 266
           F L+
Sbjct: 159 FGLA 162

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  100 bits (252), Expect = 6e-24
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 52/198 (26%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D F   R+LGSG  G+V+L + R+           +K        I K   +  ME++  
Sbjct: 22  DLFIFKRKLGSGAFGDVHLVEERSS-----GLERVIKT-------INKDRSQVPMEQIEA 69

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              +L  LDHP +  ++  FE  H   +VME C GG+L     + Q +            
Sbjct: 70  EIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGK-ALSEGYVAE 128

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-- 253
           +   +                            + AL Y H   +V++DLKPEN+L +  
Sbjct: 129 LMKQM----------------------------MNALAYFHSQHVVHKDLKPENILFQDT 160

Query: 254 -EDGHIMLSDFDLSFKCD 270
                I + DF L+    
Sbjct: 161 SPHSPIKIIDFGLAELFK 178

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            +  GT  Y+APEV          D W+ GV +Y +L G  PF G + E+       K  
Sbjct: 184 TNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEP 242

Query: 415 TFPRI--GVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            +      ++            DL+ ++L K+P++R 
Sbjct: 243 NYAVECRPLTPQ------AV--DLLKQMLTKDPERRP 271

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  102 bits (256), Expect = 7e-24
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 40/192 (20%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
                + L   LG G   NV+    R+   G     +A+KV +  +    + +     E 
Sbjct: 6   TSNHLWLLSDILGQGATANVFRG--RHKKTGDL---FAIKVFNNISF--LRPVDVQMREF 58

Query: 141 VILTMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
            +L  L+H  +  L+A  E   + +  L+ME+CP G LY     +P   +G+  ++F   
Sbjct: 59  EVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLY-TVLEEPSNAYGLPESEF--- 114

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR----E 254
                                       + +  + +L   GIV+R++KP N++       
Sbjct: 115 -----------------------LIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDG 151

Query: 255 DGHIMLSDFDLS 266
                L+DF  +
Sbjct: 152 QSVYKLTDFGAA 163

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 37/149 (24%)

Query: 355 KSFVGTHEYLAPEVISG--------QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            S  GT EYL P++           + +G+ VD W++GV  Y    G+ PF+     +  
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN 232

Query: 407 INILKKPLTFPRIGVSSSKEFEEV--------------------VKLQDLISKLLVKNPK 446
             ++ K +T    G  S  +  E                     V L  +++ +L  + +
Sbjct: 233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQE 292

Query: 447 KRIGSLKGSVEIKRHEFFKGINWALIRSI 475
           K  G           +FF   +  L R +
Sbjct: 293 KCWG---------FDQFFAETSDILHRMV 312

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  100 bits (252), Expect = 1e-23
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 359 GTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPR 418
           GT  Y+APEV+S +GH   VD W++G  +Y +L G  PF+    ++T + I K   + P+
Sbjct: 203 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK 262

Query: 419 IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
             ++             LI K+L  +P  R  ++    E+   EFF 
Sbjct: 263 -HINPV--------AASLIQKMLQTDPTARP-TIN---ELLNDEFFT 296

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 57  SHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF 116
                 A  AA  A +             +   R LG G     +   I +         
Sbjct: 14  GVAAPGAPAAAPPAKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFE--ISDADTKEV--- 68

Query: 117 YAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL 176
           +A K+V +  L    +  +  ME  I   L H  +   +  FE + +  +V+E C    L
Sbjct: 69  FAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSL 128

Query: 177 YAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH 236
               +R+  K      A                            R+Y  + +L  +YLH
Sbjct: 129 LELHKRR--KALTEPEA----------------------------RYYLRQIVLGCQYLH 158

Query: 237 MMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
              +++RDLK  N+ + ED  + + DF L+
Sbjct: 159 RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 56/200 (28%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
              F+ +  +GSG  G V+  + R     +    Y +K V        +K  R   E   
Sbjct: 10  GMDFKEIELIGSGGFGQVFKAKHR-----IDGKTYVIKRVKYN----NEKAER---EVKA 57

Query: 143 LTMLDHPFLPTLYAEFEASHYS----------------CLVMEYCPGGDLYAARQRQPGK 186
           L  LDH  +      ++   Y                  + ME+C  G L    +++ G+
Sbjct: 58  LAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGE 117

Query: 187 RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK 246
           +     A                                 +    ++Y+H   ++ RDLK
Sbjct: 118 KLDKVLA----------------------------LELFEQITKGVDYIHSKKLINRDLK 149

Query: 247 PENVLVREDGHIMLSDFDLS 266
           P N+ + +   + + DF L 
Sbjct: 150 PSNIFLVDTKQVKIGDFGLV 169

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
               GT  Y++PE IS Q +G  VD + LG+ L E+L+        +   T +       
Sbjct: 179 TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD 238

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            F +             K + L+ KLL K P+ R  +     EI R     
Sbjct: 239 IFDK-------------KEKTLLQKLLSKKPEDRP-NTS---EILRTLTVW 272

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 99.2 bits (248), Expect = 2e-23
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 55/198 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D++ +   LG G    V  C  +          +A K+++       KKL   D +K+  
Sbjct: 6   DNYDVKEELGKGAFSVVRRCVHKTT-----GLEFAAKIINT------KKLSARDFQKLER 54

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              I   L HP +  L+   +   +  LV +   GG+L+    AR     + +  + A  
Sbjct: 55  EARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-----EFYSEADASH 109

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-- 253
               +                            L ++ Y H  GIV+R+LKPEN+L+   
Sbjct: 110 CIQQI----------------------------LESIAYCHSNGIVHRNLKPENLLLASK 141

Query: 254 -EDGHIMLSDFDLSFKCD 270
            +   + L+DF L+ + +
Sbjct: 142 AKGAAVKLADFGLAIEVN 159

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
             F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I     
Sbjct: 165 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAY 224

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            +P      S E++ V    + LI  +L  NPKKRI
Sbjct: 225 DYP------SPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  100 bits (251), Expect = 2e-23
 Identities = 51/270 (18%), Positives = 85/270 (31%), Gaps = 57/270 (21%)

Query: 16  SSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLR 75
           +            + NL+   RR+ I       +   +L    K     Q         +
Sbjct: 16  NKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQ 75

Query: 76  RAQGRVGL----------DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE 125
                  L            +     +G G    V  C  R          +A+K+++  
Sbjct: 76  SMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRAT-----GHEFAVKIMEVT 130

Query: 126 ALAIRKKLHRADMEKV-----ILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLY-- 177
           A  +  +      E       IL  +  HP + TL   +E+S +  LV +    G+L+  
Sbjct: 131 AERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDY 190

Query: 178 -AARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH 236
              +             + +   L                            L A+ +LH
Sbjct: 191 LTEK-----VALSEKETRSIMRSL----------------------------LEAVSFLH 217

Query: 237 MMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
              IV+RDLKPEN+L+ ++  I LSDF  S
Sbjct: 218 ANNIVHRDLKPENILLDDNMQIRLSDFGFS 247

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 21/120 (17%)

Query: 355 KSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +   GT  YLAPE++         G+G  VD W  GV L+ +L G+ PF        L  
Sbjct: 257 RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRM 316

Query: 409 ILKKPLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I++    F       S E+++    VK  DLIS+LL  +P+ R+     + +  +H FF+
Sbjct: 317 IMEGQYQFS------SPEWDDRSSTVK--DLISRLLQVDPEARL----TAEQALQHPFFE 364

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  100 bits (251), Expect = 2e-23
 Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 60/226 (26%)

Query: 60  PHKANQAAWEAMKR----LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQC 115
           PH A+    + M R    +  A  +   D++ +   LG G    V  C  +         
Sbjct: 2   PHMASMTGGQQMGRGSEFMMNASTKFS-DNYDVKEELGKGAFSVVRRCVHKTT-----GL 55

Query: 116 FYAMKVVDREALAIRKKLHRADMEKV-----ILTMLDHPFLPTLYAEFEASHYSCLVMEY 170
            +A K+++       KKL   D +K+     I   L HP +  L+   +   +  LV + 
Sbjct: 56  EFAAKIINT------KKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDL 109

Query: 171 CPGGDLY---AARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE 227
             GG+L+    AR     + +  + A      +                           
Sbjct: 110 VTGGELFEDIVAR-----EFYSEADASHCIQQI--------------------------- 137

Query: 228 TLLALEYLHMMGIVYRDLKPENVLVR---EDGHIMLSDFDLSFKCD 270
            L ++ Y H  GIV+R+LKPEN+L+    +   + L+DF L+ + +
Sbjct: 138 -LESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
             F GT  YL+PEV+    +   VD W  GV LY +L G  PF  E+  +    I     
Sbjct: 188 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAY 247

Query: 415 TFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
            +P      S E++ V    K   LI  +L  NPKKRI
Sbjct: 248 DYP------SPEWDTVTPEAK--SLIDSMLTVNPKKRI 277

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  100 bits (250), Expect = 3e-23
 Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 33/140 (23%)

Query: 353 RSKSFVGTHEYLAPEVISGQG-----------HGSAVDWWTLGVFLYEMLYGTTPFKGEN 401
                  +  +  PE+ + +               + D W LG+ +Y +     P   + 
Sbjct: 258 ARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDA 317

Query: 402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
                  I +     P          + V   + L+   L    + R+  L    +    
Sbjct: 318 ALGGSEWIFRSCKNIP----------QPV---RALLEGFLRYPKEDRLLPL----QAMET 360

Query: 462 EFFKGINWALIRSIKPPEVP 481
             ++      +R+     +P
Sbjct: 361 PEYEQ-----LRTELSAALP 375

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 25/196 (12%), Positives = 57/196 (29%), Gaps = 26/196 (13%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKV 141
                  LG  D         +    G     + + V            K++    +   
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQET--GES---FEVHVPYFTERPPSNAIKQMKEEVLRLR 128

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           +L  + +     ++  F          +      +    +                F L+
Sbjct: 129 LLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDM---------WVLSRFFLY 179

Query: 202 FFFYNNLG--------FVHTDVTLFFNYRFY-AAETLLALEYLHMMGIVYRDLKPENVLV 252
               +NL            T  +L  + R     + +  L  LH  G+V+  L+P ++++
Sbjct: 180 PRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVL 239

Query: 253 REDGHIMLSDFDLSFK 268
            + G + L+ F+   +
Sbjct: 240 DQRGGVFLTGFEHLVR 255

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  100 bits (252), Expect = 5e-23
 Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 38/190 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D ++  R LG G  G V LC+ +           A+KV+ +  +  +        E  +L
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKIT-----GQECAVKVISKRQVKQKTDKESLLREVQLL 80

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             LDHP +  LY  FE   Y  LV E   GG+L+     +  KRF    A  +   +   
Sbjct: 81  KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQV--- 135

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---EDGHIML 260
                                    L  + Y+H   IV+RDLKPEN+L+    +D +I +
Sbjct: 136 -------------------------LSGITYMHKNKIVHRDLKPENLLLESKSKDANIRI 170

Query: 261 SDFDLSFKCD 270
            DF LS   +
Sbjct: 171 IDFGLSTHFE 180

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K  +GT  Y+APEV+ G  +    D W+ GV LY +L G  PF G N    L  + K   
Sbjct: 186 KDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKY 244

Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           TF       VS S         +DLI K+L   P  RI
Sbjct: 245 TFELPQWKKVSES--------AKDLIRKMLTYVPSMRI 274

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 98.1 bits (245), Expect = 5e-23
 Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 55/198 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           + + ++  LG G  G V  C+ R       Q  YA+KV+++            D   +  
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRIT-----QQEYAVKVINK------ASAKNKDTSTILR 70

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              +L  LDHP +  L+   E S    +V E   GG+L+     R     KRF    A  
Sbjct: 71  EVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-----KRFSEHDAAR 125

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-- 253
           +   +                               + Y+H   IV+RDLKPEN+L+   
Sbjct: 126 IIKQV----------------------------FSGITYMHKHNIVHRDLKPENILLESK 157

Query: 254 -EDGHIMLSDFDLSFKCD 270
            +D  I + DF LS    
Sbjct: 158 EKDCDIKIIDFGLSTCFQ 175

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 85.7 bits (213), Expect = 9e-19
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K  +GT  Y+APEV+ G  +    D W+ GV LY +L GT PF G+N    L  +     
Sbjct: 181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKY 239

Query: 415 TFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
            F         ++  +    K  DLI K+L  +P  RI
Sbjct: 240 AFD------LPQWRTISDDAK--DLIRKMLTFHPSLRI 269

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 99.3 bits (248), Expect = 6e-23
 Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 42/191 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--V 141
           D + L   +G G    V  C  R          +A+K+VD         L   D+++   
Sbjct: 24  DVYELCEVIGKGPFSVVRRCINRET-----GQQFAVKIVDVAKFTSSPGLSTEDLKREAS 78

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKFVFF 198
           I  ML HP +  L   + +     +V E+  G DL      R    G  +  + A     
Sbjct: 79  ICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRAD-AGFVYSEAVASHYMR 137

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---ED 255
            +                            L AL Y H   I++RD+KP  VL+      
Sbjct: 138 QI----------------------------LEALRYCHDNNIIHRDVKPHCVLLASKENS 169

Query: 256 GHIMLSDFDLS 266
             + L  F ++
Sbjct: 170 APVKLGGFGVA 180

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
              VGT  ++APEV+  + +G  VD W  GV L+ +L G  PF G   E+    I+K   
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-KERLFEGIIKGKY 249

Query: 415 TFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
                     +++  +    K  DL+ ++L+ +P +RI
Sbjct: 250 KMN------PRQWSHISESAK--DLVRRMLMLDPAERI 279

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  100 bits (251), Expect = 7e-23
 Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 49/195 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           + + ++  LG G  G V  C+ R       Q  YA+KV+++            D   +  
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRIT-----QQEYAVKVINK------ASAKNKDTSTILR 70

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              +L  LDHP +  L+   E S    +V E   GG+L+    ++  KRF    A  +  
Sbjct: 71  EVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIK 128

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---ED 255
            +                               + Y+H   IV+RDLKPEN+L+    +D
Sbjct: 129 QV----------------------------FSGITYMHKHNIVHRDLKPENILLESKEKD 160

Query: 256 GHIMLSDFDLSFKCD 270
             I + DF LS    
Sbjct: 161 CDIKIIDFGLSTCFQ 175

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K  +GT  Y+APEV+ G  +    D W+ GV LY +L GT PF G+N    L  +     
Sbjct: 181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKY 239

Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F       +S           +DLI K+L  +P  RI
Sbjct: 240 AFDLPQWRTISDD--------AKDLIRKMLTFHPSLRI 269

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  100 bits (250), Expect = 1e-22
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 49/195 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           + ++ +++LGSG  G V LC+ +           A+K++ +        +  +   K+  
Sbjct: 37  EMYQRVKKLGSGAYGEVLLCRDKVT-----HVERAIKIIRK------TSVSTSSNSKLLE 85

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              +L +LDHP +  LY  FE      LVME   GG+L+     +   +F    A  +  
Sbjct: 86  EVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIK 143

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---ED 255
            +                            L  + YLH   IV+RDLKPEN+L+    +D
Sbjct: 144 QV----------------------------LSGVTYLHKHNIVHRDLKPENLLLESKEKD 175

Query: 256 GHIMLSDFDLSFKCD 270
             I + DF LS   +
Sbjct: 176 ALIKIVDFGLSAVFE 190

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K  +GT  Y+APEV+  + +    D W++GV L+ +L G  PF G+ +++ L  + K   
Sbjct: 196 KERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKY 254

Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           TF       VS           +DLI ++L  + ++RI
Sbjct: 255 TFDSPEWKNVSEG--------AKDLIKQMLQFDSQRRI 284

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 96.9 bits (242), Expect = 1e-22
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF GE  ++TL NI     
Sbjct: 169 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY 228

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F        + F    +L +D I +LLVK+PK+R+
Sbjct: 229 DFD------EEYFSNTSELAKDFIRRLLVKDPKRRM 258

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 94.6 bits (236), Expect = 9e-22
 Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 46/196 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           DH+ +   LGSG    V  C+ +          YA K + +  L           E++  
Sbjct: 5   DHYEMGEELGSGQFAIVRKCRQKGT-----GKEYAAKFIKKRRL--SSSRRGVSREEIER 57

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              IL  + HP + TL+  FE      L++E   GG+                       
Sbjct: 58  EVNILREIRHPNIITLHDIFENKTDVVLILELVSGGE----------------------- 94

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV----RE 254
            LF F          + T F        + L  + YLH   I + DLKPEN+++      
Sbjct: 95  -LFDFLAEKESLTEDEATQFLK------QILDGVHYLHSKRIAHFDLKPENIMLLDKNVP 147

Query: 255 DGHIMLSDFDLSFKCD 270
           +  I L DF ++ K +
Sbjct: 148 NPRIKLIDFGIAHKIE 163

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  100 bits (250), Expect = 1e-22
 Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 47/263 (17%)

Query: 10  SDYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWE 69
           S     ++ + +P   R          +   +    + +++  +           Q    
Sbjct: 91  SKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEI 150

Query: 70  AMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI 129
               +         DH+ +   LG+G  G V+    R          +A K V     + 
Sbjct: 151 KHDHVL--------DHYDIHEELGTGAFGVVHRVTERAT-----GNNFAAKFVMTPHESD 197

Query: 130 RKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFG 189
           ++ + +   E   +++L HP L  L+  FE  +   ++ E+  GG+L+   ++   +   
Sbjct: 198 KETVRK---EIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELF---EKVADEHNK 251

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           +S  + V ++                           +    L ++H    V+ DLKPEN
Sbjct: 252 MSEDEAVEYMR--------------------------QVCKGLCHMHENNYVHLDLKPEN 285

Query: 250 VLV--REDGHIMLSDFDLSFKCD 270
           ++   +    + L DF L+   D
Sbjct: 286 IMFTTKRSNELKLIDFGLTAHLD 308

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 96.8 bits (241), Expect = 2e-21
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K   GT E+ APEV  G+  G   D W++GV  Y +L G +PF GEN+++TL N+     
Sbjct: 314 KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW 373

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
                       F  + +  +D I KLL+ +P  R+
Sbjct: 374 NMD------DSAFSGISEDGKDFIRKLLLADPNTRM 403

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 47/193 (24%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            ++ L   +G G  G V +   +       +   A K + +  +    +  +   E  I+
Sbjct: 9   QYYTLENTIGRGSWGEVKIAVQKGT-----RIRRAAKKIPKYFVEDVDRFKQ---EIEIM 60

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKFVFFLL 200
             LDHP +  LY  FE +    LVME C GG+L+     +     + F  S A  +   +
Sbjct: 61  KSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK-----RVFRESDAARIMKDV 115

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---EDGH 257
                                       L A+ Y H + + +RDLKPEN L      D  
Sbjct: 116 ----------------------------LSAVAYCHKLNVAHRDLKPENFLFLTDSPDSP 147

Query: 258 IMLSDFDLSFKCD 270
           + L DF L+ +  
Sbjct: 148 LKLIDFGLAARFK 160

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 16/115 (13%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           ++ VGT  Y++P+V+ G  +G   D W+ GV +Y +L G  PF    + + ++ I +   
Sbjct: 166 RTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTF 224

Query: 415 TFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
           TFP       K++  V    +   LI +LL K+PK+RI     S++   HE+F+ 
Sbjct: 225 TFP------EKDWLNVSPQAE--SLIRRLLTKSPKQRI----TSLQALEHEWFEK 267

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 63/202 (31%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           + ++L   LG G    V  C             YA  +++       KKL   D +K+  
Sbjct: 11  EEYQLFEELGKGAFSVVRRCVKVLA-----GQEYAAMIINT------KKLSARDHQKLER 59

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKF 195
              I  +L HP +  L+       +  L+ +   GG+L+    AR+              
Sbjct: 60  EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVARE-------------- 105

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET----LLALEYLHMMGIVYRDLKPENVL 251
                                 +++    A+      L A+ + H MG+V+R+LKPEN+L
Sbjct: 106 ----------------------YYSEA-DASHCIQQILEAVLHCHQMGVVHRNLKPENLL 142

Query: 252 VR---EDGHIMLSDFDLSFKCD 270
           +    +   + L+DF L+ + +
Sbjct: 143 LASKLKGAAVKLADFGLAIEVE 164

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
             F GT  YL+PEV+    +G  VD W  GV LY +L G  PF  E+  +    I     
Sbjct: 171 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAY 230

Query: 415 TFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
            FP      S E++ V    K  DLI+K+L  NP KRI
Sbjct: 231 DFP------SPEWDTVTPEAK--DLINKMLTINPSKRI 260

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 48/193 (24%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           +++     LG G    V  C  +          YA+K++D             ++ +   
Sbjct: 17  ENYEPKEILGRGVSSVVRRCIHKPT-----CKEYAVKIIDVTGGGSFSAEEVQELREATL 71

Query: 142 ----ILTMLD-HPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSA 193
               IL  +  HP +  L   +E + +  LV +    G+L+     +             
Sbjct: 72  KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-----VTLSEKET 126

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           + +   L                            L  +  LH + IV+RDLKPEN+L+ 
Sbjct: 127 RKIMRAL----------------------------LEVICALHKLNIVHRDLKPENILLD 158

Query: 254 EDGHIMLSDFDLS 266
           +D +I L+DF  S
Sbjct: 159 DDMNIKLTDFGFS 171

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 355 KSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           +   GT  YLAPE+I         G+G  VD W+ GV +Y +L G+ PF        L  
Sbjct: 181 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRM 240

Query: 409 ILKKPLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I+     F       S E+++    VK  DL+S+ LV  P+KR      + E   H FF+
Sbjct: 241 IMSGNYQFG------SPEWDDYSDTVK--DLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

Query: 466 GINWALIR 473
                 +R
Sbjct: 289 QYVVEEVR 296

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +  +GT EYLAPE+++     +A D W +G+  Y +L  T+PF GE+N++T +NI +  +
Sbjct: 191 REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNV 250

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            +        + F  V +L  D I  LLVKNP+KR 
Sbjct: 251 DYS------EETFSSVSQLATDFIQSLLVKNPEKRP 280

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 89.6 bits (223), Expect = 7e-20
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 50/223 (22%)

Query: 58  HKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRR-LGSGDIGNVYLCQIRNPMVGLPQCF 116
           H  H ++           ++      + + L  + LG G    V  C  ++         
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMENFN-NFYILTSKELGRGKFAVVRQCISKST-----GQE 56

Query: 117 YAMKVVDREALAIRKKLHRADMEKV-----ILTMLDH-PFLPTLYAEFEASHYSCLVMEY 170
           YA K + +      ++  +    ++     +L +    P +  L+  +E +    L++EY
Sbjct: 57  YAAKFLKK------RRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEY 110

Query: 171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL 230
             GG+++        +   + S                     DV           + L 
Sbjct: 111 AAGGEIF---SLCLPELAEMVSEN-------------------DVIRLIK------QILE 142

Query: 231 ALEYLHMMGIVYRDLKPENVLV---REDGHIMLSDFDLSFKCD 270
            + YLH   IV+ DLKP+N+L+      G I + DF +S K  
Sbjct: 143 GVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIG 185

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+     
Sbjct: 175 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY 234

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F        + F     L +D I +LLVK+PKKR+
Sbjct: 235 EFE------DEYFSNTSALAKDFIRRLLVKDPKKRM 264

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 92.7 bits (231), Expect = 6e-21
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 46/196 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D++     LGSG    V  C+ ++         YA K + +     +        E +  
Sbjct: 11  DYYDTGEELGSGQFAVVKKCREKST-----GLQYAAKFIKKRRT--KSSRRGVSREDIER 63

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              IL  + HP + TL+  +E      L++E   GG+                       
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGE----------------------- 100

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR----E 254
            LF F          + T F        + L  + YLH + I + DLKPEN+++      
Sbjct: 101 -LFDFLAEKESLTEEEATEFLK------QILNGVYYLHSLQIAHFDLKPENIMLLDRNVP 153

Query: 255 DGHIMLSDFDLSFKCD 270
              I + DF L+ K D
Sbjct: 154 KPRIKIIDFGLAHKID 169

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY 235

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F        + F    +L +D I KLLVK  +KR+
Sbjct: 236 DFD------EEFFSHTSELAKDFIRKLLVKETRKRL 265

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 46/196 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D + +   LGSG    V  C+ ++         YA K + +     R        E++  
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKST-----GLEYAAKFIKKRQS--RASRRGVSREEIER 64

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              IL  + H  + TL+  +E      L++E   GG+                       
Sbjct: 65  EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGE----------------------- 101

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR----E 254
            LF F          + T F        + L  + YLH   I + DLKPEN+++      
Sbjct: 102 -LFDFLAQKESLSEEEATSFIK------QILDGVNYLHTKKIAHFDLKPENIMLLDKNIP 154

Query: 255 DGHIMLSDFDLSFKCD 270
             HI L DF L+ + +
Sbjct: 155 IPHIKLIDFGLAHEIE 170

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL NI     
Sbjct: 176 KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSY 235

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F        + F +  +L +D I KLLVK  +KR+
Sbjct: 236 DFD------EEFFSQTSELAKDFIRKLLVKETRKRL 265

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 93.6 bits (233), Expect = 5e-21
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 46/196 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D + +   LGSG    V  C+ ++         YA K + +     R        E++  
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKST-----GLEYAAKFIKKRQS--RASRRGVCREEIER 64

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
              IL  + HP + TL+  +E      L++E   GG+                       
Sbjct: 65  EVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGE----------------------- 101

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR----E 254
            LF F          + T F        + L  + YLH   I + DLKPEN+++      
Sbjct: 102 -LFDFLAQKESLSEEEATSFIK------QILDGVNYLHTKKIAHFDLKPENIMLLDKNIP 154

Query: 255 DGHIMLSDFDLSFKCD 270
             HI L DF L+ + +
Sbjct: 155 IPHIKLIDFGLAHEIE 170

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K   GT E+LAPEV++        D W++GV  Y +L G +PF G+N+ +TL NIL    
Sbjct: 246 KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRW 305

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
                     +EF+++ +  ++ ISKLL+K    RI
Sbjct: 306 DLE------DEEFQDISEEAKEFISKLLIKEKSWRI 335

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 41/191 (21%)

Query: 84  DHFRLLRR--LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
             + + +   LG G  G V+ C+             A K++    +  ++++     E  
Sbjct: 87  SFYTVSKTEILGGGRFGQVHKCEETAT-----GLKLAAKIIKTRGMKDKEEVKN---EIS 138

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           ++  LDH  L  LY  FE+ +   LVMEY  GG+L+    R   + + ++          
Sbjct: 139 VMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELF---DRIIDESYNLTEL-------- 187

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV--REDGHIM 259
                       D  LF        +    + ++H M I++ DLKPEN+L   R+   I 
Sbjct: 188 ------------DTILFMK------QICEGIRHMHQMYILHLDLKPENILCVNRDAKQIK 229

Query: 260 LSDFDLSFKCD 270
           + DF L+ +  
Sbjct: 230 IIDFGLARRYK 240

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 97.1 bits (242), Expect = 5e-22
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 39/189 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D++ +L  LGSG  G V+ C  +          +  K ++      +  +     E  I+
Sbjct: 51  DYYDILEELGSGAFGVVHRCVEKAT-----GRVFVAKFINTPYPLDKYTVKN---EISIM 102

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L HP L  L+  FE  +   L++E+  GG+L+    R   + + +S A+ + ++    
Sbjct: 103 NQLHHPKLINLHDAFEDKYEMVLILEFLSGGELF---DRIAAEDYKMSEAEVINYMR--- 156

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV--REDGHIMLS 261
                                  +    L+++H   IV+ D+KPEN++   ++   + + 
Sbjct: 157 -----------------------QACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKII 193

Query: 262 DFDLSFKCD 270
           DF L+ K +
Sbjct: 194 DFGLATKLN 202

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 96.7 bits (241), Expect = 6e-22
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           K    T E+ APE++  +  G   D W +GV  Y +L G +PF GE++ +TL N+ +   
Sbjct: 208 KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW 267

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F          F  V    +D I  LL K P+KR+
Sbjct: 268 EFD------EDAFSSVSPEAKDFIKNLLQKEPRKRL 297

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 95.5 bits (238), Expect = 5e-22
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 46/196 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L  F  ++ LG G  G V+  + +     +  C YA+K +            +   E   
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNK-----VDDCNYAIKRIRLPNRE--LAREKVMREVKA 56

Query: 143 LTMLDHPFLPTLYAEFE------------ASHYSCLVMEYCPGGDLYAARQRQPGKRFGI 190
           L  L+HP +   +  +                Y  + M+ C   +L      +       
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEE-- 114

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV 250
                                               +   A+E+LH  G+++RDLKP N+
Sbjct: 115 RERSVC-------------------------LHIFLQIAEAVEFLHSKGLMHRDLKPSNI 149

Query: 251 LVREDGHIMLSDFDLS 266
               D  + + DF L 
Sbjct: 150 FFTMDDVVKVGDFGLV 165

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           +   P  AR    VGT  Y++PE I G  +   VD ++LG+ L+E+LY   PF  +    
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV 234

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
             +  ++    FP +                ++  +L  +P +R         I  +  F
Sbjct: 235 RTLTDVRNL-KFPPLFTQKYPC------EYVMVQDMLSPSPMERP-EAI---NIIENAVF 283

Query: 465 KGIN 468
           + ++
Sbjct: 284 EDLD 287

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 95.9 bits (238), Expect = 1e-21
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 21/193 (10%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
             +L+  L  GD   V+L   R+         +A+KV    A   R +L R         
Sbjct: 63  KLKLVEPLRVGDRSVVFLV--RDVERLED---FALKVFTMGAENSRSELERLHEATFAAA 117

Query: 145 MLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
            L                                A+       + +++    + LL    
Sbjct: 118 RLLGESPEEARDRR---RLLLPSDAVAVQSQPPFAQLSPGQDDYAVAN----YLLLMPAA 170

Query: 205 YNNLGFVHTDVTLFFNY---------RFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
             +L  + + +   + +             A+ +     L   G+V+    P+N+ +  D
Sbjct: 171 SVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPD 230

Query: 256 GHIMLSDFDLSFK 268
           G +ML D    +K
Sbjct: 231 GRLMLGDVSALWK 243

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 6/121 (4%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
              +  R  +      Y   E ++        A++ W LG+ +Y +     PF       
Sbjct: 241 LWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGI 300

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
                           ++          ++ LI + L  + ++R+  L    E      F
Sbjct: 301 KGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPL----EAMETPEF 356

Query: 465 K 465
            
Sbjct: 357 L 357

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME-KV 141
              F  L ++GSG+ G+V+ C  R     L  C YA+K   +  LA       A  E   
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKR-----LDGCIYAIKRSKKP-LAGSVDEQNALREVYA 63

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
              +  H  +   ++ +    +  +  EYC GG L  A             A+       
Sbjct: 64  HAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAEL------ 117

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                               +    +    L Y+H M +V+ D+KP N+ +        +
Sbjct: 118 --------------------KDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAA 157

Query: 262 DFDLSFKCDVVPKLL 276
             +         K++
Sbjct: 158 SEEGDEDDWASNKVM 172

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 16/112 (14%)

Query: 355 KSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +   G   +LA EV+     H    D + L + +              N      I +  
Sbjct: 188 QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLP---RNGDQWHEIRQGR 244

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              PRI    S+EF       +L+  ++  +P++R      ++ + +H    
Sbjct: 245 --LPRIPQVLSQEF------TELLKVMIHPDPERRP----SAMALVKHSVLL 284

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +      EY APEV       +A D W+LG  +Y +L G  PF  E N++ + NI+    
Sbjct: 161 RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEY 220

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
           TF        + F+E+     D + +LLVK  K R+
Sbjct: 221 TFD------EEAFKEISIEAMDFVDRLLVKERKSRM 250

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 54/196 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--V 141
           + + +   LG G+ G V+ C   +      +  Y  K V        K   +  ++K   
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSS-----KKTYMAKFVKV------KGTDQVLVKKEIS 53

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQRQPGKRFGISSAKFVFF 198
           IL +  H  +  L+  FE+     ++ E+  G D++                        
Sbjct: 54  ILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTS------------------ 95

Query: 199 LLFFFFYNNLGFVHT--DVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV--RE 254
                      F     ++  + +      +   AL++LH   I + D++PEN++   R 
Sbjct: 96  ----------AFELNEREIVSYVH------QVCEALQFLHSHNIGHFDIRPENIIYQTRR 139

Query: 255 DGHIMLSDFDLSFKCD 270
              I + +F  + +  
Sbjct: 140 SSTIKIIEFGQARQLK 155

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 96.7 bits (240), Expect = 2e-21
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 54/209 (25%)

Query: 72  KRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK 131
            R      +     + +  RLG+G  G V      +   G      A+K         R+
Sbjct: 3   GRSPSLPTQT-CGPWEMKERLGTGGFGYVLRW--IHQDTGEQ---VAIKQ-------CRQ 49

Query: 132 KLHRADMEKV-----ILTMLDHPFLPTLYAEFE------ASHYSCLVMEYCPGGDLYAAR 180
           +L   + E+      I+  L+HP + +     +       +    L MEYC GGDL    
Sbjct: 50  ELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLR-KY 108

Query: 181 QRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI 240
             Q     G+                               R   ++   AL YLH   I
Sbjct: 109 LNQFENCCGLKEGPI--------------------------RTLLSDISSALRYLHENRI 142

Query: 241 VYRDLKPENVLVREDGH---IMLSDFDLS 266
           ++RDLKPEN++++         + D   +
Sbjct: 143 IHRDLKPENIVLQPGPQRLIHKIIDLGYA 171

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 87.4 bits (216), Expect = 2e-18
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
             FVGT +YLAPE++  + +   VD+W+ G   +E + G  PF            +++  
Sbjct: 181 TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKS 240

Query: 415 TFPRIGVSSSK---EFEEVV------------KLQDLISKLLVKNPKKRIGSLKGSVEIK 459
               +         +F  V+            KL+  +  +L+ + ++R        +  
Sbjct: 241 NEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP----QNP 296

Query: 460 RHEFFKGINWALIRSI 475
               F+ ++  L   +
Sbjct: 297 NVGCFQALDSILSLKL 312

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 95.9 bits (239), Expect = 3e-21
 Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 55/213 (25%)

Query: 74  LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA----- 128
           +R+ +G++G + +  +R+LGSG  G V LC+ +N          A+KV+ +         
Sbjct: 27  VRKKEGKIG-ESYFKVRKLGSGAYGEVLLCKEKNG-----HSEKAIKVIKKSQFDKGRYS 80

Query: 129 IRKKLHRADMEKV-----ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AAR 180
              K      E++     +L  LDHP +  L+  FE   Y  LV E+  GG+L+     R
Sbjct: 81  DDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR 140

Query: 181 QRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI 240
                 +F    A  +   +                            L  + YLH   I
Sbjct: 141 -----HKFDECDAANIMKQI----------------------------LSGICYLHKHNI 167

Query: 241 VYRDLKPENVLVR---EDGHIMLSDFDLSFKCD 270
           V+RD+KPEN+L+       +I + DF LS    
Sbjct: 168 VHRDIKPENILLENKNSLLNIKIVDFGLSSFFS 200

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
           +  +GT  Y+APEV+  + +    D W+ GV +Y +L G  PF G+N++  +  + K   
Sbjct: 206 RDRLGTAYYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKY 264

Query: 415 TFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            F       +S           ++LI  +L  +  KR 
Sbjct: 265 YFDFNDWKNISDE--------AKELIKLMLTYDYNKRC 294

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 78/440 (17%), Positives = 134/440 (30%), Gaps = 128/440 (29%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM 138
           G +    + ++R+LG G    V+L           + F AMKVV     +       A  
Sbjct: 32  GDLFNGRYHVIRKLGWGHFSTVWLSWDIQ-----GKKFVAMKVV----KSAEHYTETALD 82

Query: 139 EKVILTML-----DHP---FLPTLYAEFEAS-----HYSCLVMEYCPGGDLYAARQRQPG 185
           E  +L  +     + P    +  L  +F+ S     H  C+V E   G  L     +   
Sbjct: 83  EIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI-CMVFEVL-GHHLLKWIIKSNY 140

Query: 186 KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRD 244
           +   +   K +   +                            L  L+YLH    I++ D
Sbjct: 141 QGLPLPCVKKIIQQV----------------------------LQGLDYLHTKCRIIHTD 172

Query: 245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVL 304
           +KPEN+L+  +   +      + +         P  S  A+      +      P++P  
Sbjct: 173 IKPENILLSVNEQYIRRLAAEATEWQRSG---APPPSGSAVSTAPATAGNFLVNPLEP-- 227

Query: 305 SCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYL 364
                    K  +K  V +  +        H  E                   + T +Y 
Sbjct: 228 ---------KNAEKLKVKIADLGNACWVHKHFTED------------------IQTRQYR 260

Query: 365 APEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---------INILKK-PL 414
           + EV+ G G+ +  D W+     +E+  G   F+  + E+           I +L K P 
Sbjct: 261 SLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPR 320

Query: 415 TFPRIGVSSSKEF-----------------------------EEVVKLQDLISKLLVKNP 445
                G  S + F                             EE     D +  +L   P
Sbjct: 321 KLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIP 380

Query: 446 KKRIGSLKGSVEIKRHEFFK 465
           +KR  +     E  RH +  
Sbjct: 381 EKRA-TAA---ECLRHPWLN 396

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 27/129 (20%)

Query: 351 NARSKSFVGTHEYLAPEVISGQG-----------HGSAVDWWTLGVFLYEMLYGTTPFKG 399
           +    S VGT  Y+ PE I                    D W+LG  LY M YG TPF+ 
Sbjct: 182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 241

Query: 400 -ENNEKTLINILKK--PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV 456
             N    L  I+     + FP I             LQD++   L ++PK+RI S+    
Sbjct: 242 IINQISKLHAIIDPNHEIEFPDI-PEKD--------LQDVLKCCLKRDPKQRI-SIP--- 288

Query: 457 EIKRHEFFK 465
           E+  H + +
Sbjct: 289 ELLAHPYVQ 297

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 51/216 (23%)

Query: 58  HKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFY 117
           H  H  +       + L      V    + +L+++GSG    V+            +  Y
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK------KQIY 55

Query: 118 AMKVVDREALAIRKKLHRADMEKV-----ILTMLDHPFLP--TLYAEFEASHYSCLVMEY 170
           A+K V+       ++     ++        L  L         LY       Y  +VME 
Sbjct: 56  AIKYVNL------EEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC 109

Query: 171 CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL 230
               DL +  +++  K                                   + Y    L 
Sbjct: 110 G-NIDLNSWLKKK--KSIDPWER----------------------------KSYWKNMLE 138

Query: 231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           A+  +H  GIV+ DLKP N L+  DG + L DF ++
Sbjct: 139 AVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 173

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            +  GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  E   K    I +   
Sbjct: 165 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYY 224

Query: 415 TFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
            F       S  ++++ +  +D I  LL K+P +R 
Sbjct: 225 EFE------SPFWDDISESAKDFICHLLEKDPNERY 254

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 69/200 (34%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F  +  LGSG    V+L + R          +A+K + +        L     E  +L
Sbjct: 9   KTFIFMEVLGSGAFSEVFLVKQRLT-----GKLFALKCIKKSPAFRDSSLEN---EIAVL 60

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY------------AARQ--RQPGKRFG 189
             + H  + TL   +E++ +  LVM+   GG+L+             A    +Q      
Sbjct: 61  KKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQ------ 114

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           + SA  V +L      +  G VH D                              LKPEN
Sbjct: 115 VLSA--VKYL------HENGIVHRD------------------------------LKPEN 136

Query: 250 VLVR---EDGHIMLSDFDLS 266
           +L     E+  IM++DF LS
Sbjct: 137 LLYLTPEENSKIMITDFGLS 156

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 359 GTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           G+  +  PE+ +G     G  VD W+ GV LY +  G  PF+G+N  K   NI K     
Sbjct: 173 GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAI 232

Query: 417 PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF-KGINWALIRSI 475
           P               L DL+  +L   P KR  S++   +I++H +F K    A     
Sbjct: 233 PG-DCGPP--------LSDLLKGMLEYEPAKRF-SIR---QIRQHSWFRKKHPPAEAPVP 279

Query: 476 KPPEVPNNDLYCKI 489
            PP     D +  +
Sbjct: 280 IPPSPDTKDRWRSM 293

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 53/197 (26%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA----IRKKLHR 135
            +G   + +   LG G  G V      +       C  A+K++ ++ L         + +
Sbjct: 3   LIG--KYLMGDLLGEGSYGKVKEV--LDSETL---CRRAVKILKKKKLRRIPNGEANVKK 55

Query: 136 ADMEKVILTMLDHPFLPTLY--AEFEASHYSCLVMEYCPGGDL----YAARQRQPGKRFG 189
              E  +L  L H  +  L      E      +VMEYC  G               KRF 
Sbjct: 56  ---EIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPE-----KRFP 107

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           +  A                              Y  + +  LEYLH  GIV++D+KP N
Sbjct: 108 VCQA----------------------------HGYFCQLIDGLEYLHSQGIVHKDIKPGN 139

Query: 250 VLVREDGHIMLSDFDLS 266
           +L+   G + +S   ++
Sbjct: 140 LLLTTGGTLKISALGVA 156

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 42/116 (36%), Positives = 54/116 (46%), Gaps = 16/116 (13%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNE----KTLINI 409
           KS VGT  Y+APEV+  Q   G   D W+ GV LY ML G  PF+         KT+  I
Sbjct: 175 KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRI 234

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           L    + P     S        +   LIS++ V +P  RI S+    EIK H +F 
Sbjct: 235 LSVKYSIPDDIRISP-------ECCHLISRIFVADPATRI-SIP---EIKTHSWFL 279

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 43/188 (22%), Positives = 68/188 (36%), Gaps = 45/188 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
            D +  ++ +GSG+ G   L   R+ +        A+K ++R A  I + + R   E + 
Sbjct: 19  SDRYDFVKDIGSGNFGVARLM--RDKLTKEL---VAVKYIERGAA-IDENVQR---EIIN 69

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLL 200
              L HP +           +  ++MEY  GG+L            RF    A       
Sbjct: 70  HRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA----GRFSEDEA------- 118

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED--GHI 258
                                RF+  + L  + Y H M I +RDLK EN L+       +
Sbjct: 119 ---------------------RFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRL 157

Query: 259 MLSDFDLS 266
            + DF  S
Sbjct: 158 KICDFGYS 165

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 27/125 (21%)

Query: 355 KSFVGTHEYLAPEVISGQG-----------HGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
            S VGT  Y+ PE I                    D W+LG  LY M YG TPF+   N+
Sbjct: 167 DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ 226

Query: 404 -KTLINILKK--PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR 460
              L  I+     + FP               LQD++   L ++PK+RI S+    E+  
Sbjct: 227 ISKLHAIIDPNHEIEFPD-IPEKD--------LQDVLKCCLKRDPKQRI-SIP---ELLA 273

Query: 461 HEFFK 465
           H + +
Sbjct: 274 HPYVQ 278

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 51/194 (26%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            V    + +L+++GSG    V+            +  YA+K V+       ++     ++
Sbjct: 5   SVKGRIYSILKQIGSGGSSKVFQVLNEK------KQIYAIKYVNL------EEADNQTLD 52

Query: 140 KV-----ILTMLDHPFLP--TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
                   L  L         LY       Y  +VME     DL +  +++  K      
Sbjct: 53  SYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKK--KSIDPWE 109

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
                                        + Y    L A+  +H  GIV+ DLKP N L+
Sbjct: 110 R----------------------------KSYWKNMLEAVHTIHQHGIVHSDLKPANFLI 141

Query: 253 REDGHIMLSDFDLS 266
             DG + L DF ++
Sbjct: 142 -VDGMLKLIDFGIA 154

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 27/133 (20%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
             F GT  Y  PE I     HG +   W+LG+ LY+M+ G  PF+ +        I++  
Sbjct: 206 TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 259

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR 473
           + F +  VSS          Q LI   L   P  R  + +   EI+ H + + +      
Sbjct: 260 VFFRQ-RVSSE--------CQHLIRWCLALRPSDRP-TFE---EIQNHPWMQDVL----- 301

Query: 474 SIKPPEVPNNDLY 486
              P E     L+
Sbjct: 302 --LPQETAEIHLH 312

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 44/230 (19%)

Query: 45  SSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQ 104
           S      +S       H A      A K     +       +++   LGSG  G+VY   
Sbjct: 4   SHHHHHHSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSG- 62

Query: 105 IRNPMVGLPQCFYAMKVVDREAL---AIRKKLHRADMEKVILTMLDHPFLP---TLYAEF 158
                  LP    A+K V+++ +          R  ME V+L  +   F      L   F
Sbjct: 63  -IRVSDNLP---VAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF-SGVIRLLDWF 117

Query: 159 EASHYSCLVMEYC-PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTL 217
           E      L++E   P  DL                         F F    G +  ++  
Sbjct: 118 ERPDSFVLILERPEPVQDL-------------------------FDFITERGALQEELA- 151

Query: 218 FFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-REDGHIMLSDFDLS 266
               R +  + L A+ + H  G+++RD+K EN+L+    G + L DF   
Sbjct: 152 ----RSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSG 197

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
            +F G   Y APE+  G+   G  VD W+LGV LY ++ G+ PF G+N ++    +L+  
Sbjct: 171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK 230

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK-GINWALI 472
              P   +S+          ++L+ + LV NP KR  +L+   +I +  +   G     +
Sbjct: 231 YRIPF-YMSTD--------CENLLKRFLVLNPIKRG-TLE---QIMKDRWINAGHEEDEL 277

Query: 473 RSIKPPEVPNND 484
           +    PE+  +D
Sbjct: 278 KPFVEPELDISD 289

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 54/205 (26%)

Query: 70  AMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI 129
           ++      Q  +G  ++RLL+ +G G+   V L   R+ + G      A+K++D+     
Sbjct: 3   SIASCADEQPHIG--NYRLLKTIGKGNFAKVKLA--RHILTGRE---VAIKIIDKT---- 51

Query: 130 RKKLHRADMEKV-----ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY---AARQ 181
             +L+   ++K+     I+ +L+HP +  L+   E      L+MEY  GG+++    A  
Sbjct: 52  --QLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG 109

Query: 182 RQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV 241
           R   K      A                            R    + + A++Y H   IV
Sbjct: 110 RMKEKE-----A----------------------------RSKFRQIVSAVQYCHQKRIV 136

Query: 242 YRDLKPENVLVREDGHIMLSDFDLS 266
           +RDLK EN+L+  D +I ++DF  S
Sbjct: 137 HRDLKAENLLLDADMNIKIADFGFS 161

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 91.3 bits (226), Expect = 5e-20
 Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 22/134 (16%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHG-----SAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
                    E  A  ++    H       A D WTLG+ +Y +     P   +       
Sbjct: 268 PIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSE 327

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
            I +     P+              ++ L+   L    + R+  L    +      ++ +
Sbjct: 328 WIFRSCKNIPQP-------------VRALLEGFLRYPKEDRLLPL----QAMETPEYEQL 370

Query: 468 NWALIRSIKPPEVP 481
              L  ++   +  
Sbjct: 371 RTELSAALPLYQTD 384

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 90.5 bits (224), Expect = 1e-19
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 26/193 (13%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA---IRKKLHRADMEKVI 142
                 LG  D          +   G     + + V            K++    +   +
Sbjct: 80  LVRGTVLGQEDPYAYLEA--TDQETGES---FEVHVPYFTERPPSNAIKQMKEEVLRLRL 134

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  + +     ++  F          +      +     R   +   + S     F L+ 
Sbjct: 135 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV-----RLDERDMWVLS----RFFLYP 185

Query: 203 FFYNNLG--------FVHTDVTLFFNYRFY-AAETLLALEYLHMMGIVYRDLKPENVLVR 253
              +NL            T  +L  + R     + +  L  LH  G+V+  L+P ++++ 
Sbjct: 186 RMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLD 245

Query: 254 EDGHIMLSDFDLS 266
           + G + L+ F+  
Sbjct: 246 QRGGVFLTGFEHL 258

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN-ILKKP 413
           K+  GT  Y APE++ G  +G  VD W++G+  Y +L G  PF  E  ++ +   IL   
Sbjct: 208 KTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCE 267

Query: 414 LTFPRIGVSSSKEFEEVVKL-QDLISKLLVKNPKKRI 449
             F       S  ++EV    +DL+ KL+V +PKKR+
Sbjct: 268 YYFI------SPWWDEVSLNAKDLVRKLIVLDPKKRL 298

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 48/204 (23%), Positives = 67/204 (32%), Gaps = 71/204 (34%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F +   LG G    VY C+ +       Q  YA+KV+ +              E  +L
Sbjct: 53  DFFEVESELGRGATSIVYRCKQKGT-----QKPYALKVLKK-----TVDKKIVRTEIGVL 102

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLY------------AARQ--RQPGKRFG 189
             L HP +  L   FE      LV+E   GG+L+             A    +Q      
Sbjct: 103 LRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQ------ 156

Query: 190 ISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
           I  A  V +L      +  G VH D                              LKPEN
Sbjct: 157 ILEA--VAYL------HENGIVHRD------------------------------LKPEN 178

Query: 250 VLVR---EDGHIMLSDFDLSFKCD 270
           +L      D  + ++DF LS   +
Sbjct: 179 LLYATPAPDAPLKIADFGLSKIVE 202

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 20/112 (17%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
             F GT  Y  PE IS    H      W+LG+ LY+M+ G  PF+ +        IL+  
Sbjct: 196 TDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAE 249

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           L FP   VS             LI + L   P  R  SL+   EI    + +
Sbjct: 250 LHFPA-HVSPD--------CCALIRRCLAPKPSSRP-SLE---EILLDPWMQ 288

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 42/193 (21%), Positives = 67/193 (34%), Gaps = 44/193 (22%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL---AIRKKLHRADME 139
              +RL   LG G  G V+          L     A+KV+ R  +   +         +E
Sbjct: 30  EAEYRLGPLLGKGGFGTVFAG--HRLTDRLQ---VAIKVIPRNRVLGWSPLSDSVTCPLE 84

Query: 140 KVILTMLD----HPFLPTLYAEFEASHYSCLVMEY-CPGGDLYAARQRQPGKRFGISSAK 194
             +L  +     HP +  L   FE      LV+E   P  DL                  
Sbjct: 85  VALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDL------------------ 126

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-R 253
                  F +    G +    +     R +  + + A+++ H  G+V+RD+K EN+L+  
Sbjct: 127 -------FDYITEKGPLGEGPS-----RCFFGQVVAAIQHCHSRGVVHRDIKDENILIDL 174

Query: 254 EDGHIMLSDFDLS 266
             G   L DF   
Sbjct: 175 RRGCAKLIDFGSG 187

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 90.3 bits (224), Expect = 8e-20
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 27/125 (21%)

Query: 355 KSFVGTHEYLAPEVISGQG-----------HGSAVDWWTLGVFLYEMLYGTTPFKGENNE 403
            S VG   Y+ PE I                    D W+LG  LY M YG TPF+   N+
Sbjct: 214 DSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ 273

Query: 404 -KTLINILKK--PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR 460
              L  I+     + FP I             LQD++   L ++PK+RI S+    E+  
Sbjct: 274 ISKLHAIIDPNHEIEFPDI-PEKD--------LQDVLKCCLKRDPKQRI-SIP---ELLA 320

Query: 461 HEFFK 465
           H + +
Sbjct: 321 HPYVQ 325

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 84.5 bits (209), Expect = 8e-18
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 51/194 (26%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            V    + +L+++GSG    V+            +  YA+K V+       ++     ++
Sbjct: 52  SVKGRIYSILKQIGSGGSSKVFQVLNEK------KQIYAIKYVNL------EEADNQTLD 99

Query: 140 KV-----ILTMLDHPFLP--TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
                   L  L         LY       Y  +VME     DL +  +++  K      
Sbjct: 100 SYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKK--KSIDPWE 156

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
                                        + Y    L A+  +H  GIV+ DLKP N L+
Sbjct: 157 R----------------------------KSYWKNMLEAVHTIHQHGIVHSDLKPANFLI 188

Query: 253 REDGHIMLSDFDLS 266
             DG + L DF ++
Sbjct: 189 -VDGMLKLIDFGIA 201

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 39/193 (20%)

Query: 76  RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHR 135
           +  GRV + H+ L   LG G  G V +    + + G      A+K+++R+ +     + +
Sbjct: 3   KHDGRVKIGHYVLGDTLGVGTFGKVKIG--EHQLTGHK---VAVKILNRQKIRSLDVVGK 57

Query: 136 ADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSA 193
              E   L +  HP +  LY          +VMEY  GG+L  Y  +      R     A
Sbjct: 58  IKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH----GRVEEMEA 113

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                                       R    + L A++Y H   +V+RDLKPENVL+ 
Sbjct: 114 ----------------------------RRLFQQILSAVDYCHRHMVVHRDLKPENVLLD 145

Query: 254 EDGHIMLSDFDLS 266
              +  ++DF LS
Sbjct: 146 AHMNAKIADFGLS 158

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           ++  G+  Y APEVISG+   G  VD W+ GV LY +L GT PF  E+       I    
Sbjct: 168 RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGV 227

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              P   ++ S        +  L+  +L  +P KR  ++K   +I+ HE+FK
Sbjct: 228 FYIPEY-LNRS--------VATLLMHMLQVDPLKRA-TIK---DIREHEWFK 266

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 46/202 (22%)

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA 128
             +++L R   +   D + +   +G G       C  +          +A+K++D+    
Sbjct: 8   SIVQQLHRNSIQF-TDGYEVKEDIGVGSYSVCKRCIHKAT-----NMEFAVKIIDKSKRD 61

Query: 129 IRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRF 188
             ++       +++L    HP + TL   ++   Y  +V E   GG+L     RQ  K F
Sbjct: 62  PTEE------IEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ--KFF 113

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE 248
               A  V F +                               +EYLH  G+V+RDLKP 
Sbjct: 114 SEREASAVLFTI----------------------------TKTVEYLHAQGVVHRDLKPS 145

Query: 249 NVLVREDGH----IMLSDFDLS 266
           N+L  ++      I + DF  +
Sbjct: 146 NILYVDESGNPESIRICDFGFA 167

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 18/141 (12%)

Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF---KGENNEK 404
              N    +   T  ++APEV+  QG+ +A D W+LGV LY ML G TPF     +  E+
Sbjct: 171 RAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEE 230

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRIGSLKGSVEIKRH 461
            L  I     +           +  V    K  DL+SK+L  +P +R+     +  + RH
Sbjct: 231 ILARIGSGKFSLS------GGYWNSVSDTAK--DLVSKMLHVDPHQRL----TAALVLRH 278

Query: 462 EFFKGINWALIRSIKPPEVPN 482
            +    +      +   + P+
Sbjct: 279 PWIVHWDQLPQYQLNRQDAPH 299

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 41/190 (21%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV- 141
              +  +  LGSG  G V+     +           +K + +E +     +    + KV 
Sbjct: 23  SQKYSTMSPLGSGAFGFVWTA--VDKEKNKE---VVVKFIKKEKVLEDCWIEDPKLGKVT 77

Query: 142 ----ILTMLDHPFLPTLYAEFEASHYSCLVME-YCPGGDLYAARQRQPGKRFGISSAKFV 196
               IL+ ++H  +  +   FE   +  LVME +  G DL+A   R P  R     A ++
Sbjct: 78  LEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYI 135

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
           F                             + + A+ YL +  I++RD+K EN+++ ED 
Sbjct: 136 F----------------------------RQLVSAVGYLRLKDIIHRDIKDENIVIAEDF 167

Query: 257 HIMLSDFDLS 266
            I L DF  +
Sbjct: 168 TIKLIDFGSA 177

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 23/135 (17%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
            +F GT EY APEV+ G    G  ++ W+LGV LY +++   PF     E+     ++  
Sbjct: 187 YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF--CELEE----TVEAA 240

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF-KGINWA-- 470
           +  P + VS          L  L+S LL   P++R  +L+   ++    +  + +N A  
Sbjct: 241 IHPPYL-VSKE--------LMSLVSGLLQPVPERRT-TLE---KLVTDPWVTQPVNLADY 287

Query: 471 LIRSIKPPEVPNNDL 485
               +     P + +
Sbjct: 288 TWEEVFRVNKPESGV 302

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 45/181 (24%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-H 148
           + LG G       C  +          +A+K++ +      +       E   L + + H
Sbjct: 17  KPLGEGSFSICRKCVHKKS-----NQAFAVKIISK------RMEANTQKEITALKLCEGH 65

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           P +  L+  F    ++ LVME   GG+L+   +++  K F  + A ++   L        
Sbjct: 66  PNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKL-------- 115

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---EDGHIMLSDFDL 265
                               + A+ ++H +G+V+RDLKPEN+L     ++  I + DF  
Sbjct: 116 --------------------VSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGF 155

Query: 266 S 266
           +
Sbjct: 156 A 156

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 22/150 (14%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
            +  P N   K+   T  Y APE+++  G+  + D W+LGV LY ML G  PF+  +   
Sbjct: 157 RLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSL 216

Query: 405 TLIN-------ILKKPLTFPR---IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKG 454
           T  +       I K   +F       VS         K  DLI  LL  +P KR+     
Sbjct: 217 TCTSAVEIMKKIKKGDFSFEGEAWKNVSQE------AK--DLIQGLLTVDPNKRL----K 264

Query: 455 SVEIKRHEFFKGINWALIRSIKPPEVPNND 484
              ++ +E+ +  +      +  P++  + 
Sbjct: 265 MSGLRYNEWLQDGSQLSSNPLMTPDILGSS 294

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPF-KGENNEKTLINILKK 412
               GT  Y+APE++  +  H   VD W+ G+ L  ML G  P+ +  ++ +   +  +K
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK 224

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF-KGINWAL 471
                      S           L+ K+LV+NP  RI ++    +IK+  ++ K +    
Sbjct: 225 KTYLNPWKKIDS-------APLALLHKILVENPSARI-TIP---DIKKDRWYNKPLKKGA 273

Query: 472 IRSIKPPEVPNND 484
            R        +  
Sbjct: 274 KRPRVTSGGVSES 286

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 45/200 (22%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADMEKV 141
           ++ + L++ LG G  G V L    N +        A+K+VD +      + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLA--VNRVTEEA---VAVKIVDMKRAVDCPENIKK---EIC 57

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFL 199
           I  ML+H  +   Y      +   L +EYC GG+L                  A      
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD----IGMPEPDA------ 107

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 + +  + +  + YLH +GI +RD+KPEN+L+ E  ++ 
Sbjct: 108 ----------------------QRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLK 145

Query: 260 LSDFDLS--FKCDVVPKLLR 277
           +SDF L+  F+ +   +LL 
Sbjct: 146 ISDFGLATVFRYNNRERLLN 165

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 86.1 bits (214), Expect = 6e-19
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGE-NNEKTLINILKK 412
               GT  Y+APE++  +  H   VD W+ G+ L  ML G  P+    ++ +   +  +K
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK 224

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
                      S           L+ K+LV+NP  RI ++    +IK+  ++ 
Sbjct: 225 KTYLNPWKKIDS-------APLALLHKILVENPSARI-TIP---DIKKDRWYN 266

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 85.7 bits (213), Expect = 8e-19
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 45/200 (22%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADMEKV 141
           ++ + L++ LG G  G V L    N +        A+K+VD +      + + +   E  
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLA--VNRVTEEA---VAVKIVDMKRAVDCPENIKK---EIC 57

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFL 199
           I  ML+H  +   Y      +   L +EYC GG+L                  A      
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD----IGMPEPDA------ 107

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 + +  + +  + YLH +GI +RD+KPEN+L+ E  ++ 
Sbjct: 108 ----------------------QRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLK 145

Query: 260 LSDFDLS--FKCDVVPKLLR 277
           +SDF L+  F+ +   +LL 
Sbjct: 146 ISDFGLATVFRYNNRERLLN 165

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 43/188 (22%)

Query: 84  DHFRLLRR-LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           D ++L    LG G    V  C             YA+K+++++   IR ++ R   E  +
Sbjct: 12  DVYQLQEDVLGEGAHARVQTCINLIT-----SQEYAVKIIEKQPGHIRSRVFR---EVEM 63

Query: 143 LTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           L     H  +  L   FE      LV E   GG + +   ++  + F    A  V   + 
Sbjct: 64  LYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDV- 120

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---EDGHI 258
                                        AL++LH  GI +RDLKPEN+L     +   +
Sbjct: 121 ---------------------------ASALDFLHNKGIAHRDLKPENILCEHPNQVSPV 153

Query: 259 MLSDFDLS 266
            + DFDL 
Sbjct: 154 KICDFDLG 161

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 31/133 (23%)

Query: 340 LDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-----GHGSAVDWWTLGVFLYEMLYGT 394
           +      +        +  G+ EY+APEV+         +    D W+LGV LY +L G 
Sbjct: 164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGY 223

Query: 395 TPFKGENNEKTLIN---------------ILKKPLTFPRIGVSSSKEFEEV---VKLQDL 436
            PF G        +               I +    FP       K++  +    K  DL
Sbjct: 224 PPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFP------DKDWAHISCAAK--DL 275

Query: 437 ISKLLVKNPKKRI 449
           ISKLLV++ K+R+
Sbjct: 276 ISKLLVRDAKQRL 288

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 52/218 (23%)

Query: 60  PHKANQAAWEAMKRLRRAQGRVG--LDHFRLLRR-LGSGDIGNVYLCQIRNPMVGLPQCF 116
            H  +  +       +  + +     D ++L ++ LG G  G V  C  R          
Sbjct: 2   AHHHHHHSSGLEVLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRT-----GQK 56

Query: 117 YAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASHYSC----LVMEYC 171
            A+K++     A +        E          P +  +   +E  H+      ++ME  
Sbjct: 57  CALKLLYDSPKARQ--------EVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECM 108

Query: 172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA 231
            GG+L++  Q +  + F    A  +   +                              A
Sbjct: 109 EGGELFSRIQERGDQAFTEREAAEIMRDI----------------------------GTA 140

Query: 232 LEYLHMMGIVYRDLKPENVLV---REDGHIMLSDFDLS 266
           +++LH   I +RD+KPEN+L     +D  + L+DF  +
Sbjct: 141 IQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK-- 412
           ++   T  Y+APEV+  + +  + D W+LGV +Y +L G  PF     +     + ++  
Sbjct: 187 QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR 246

Query: 413 --PLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
                FP      + E+ EV    K   LI  LL  +P +R+
Sbjct: 247 LGQYGFP------NPEWSEVSEDAK--QLIRLLLKTDPTERL 280

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 39/198 (19%)

Query: 71  MKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR 130
           M   ++  GRV + H+ L   LG G  G V +   ++ + G      A+K+++R+ +   
Sbjct: 3   MAEKQKHDGRVKIGHYILGDTLGVGTFGKVKVG--KHELTGHK---VAVKILNRQKIRSL 57

Query: 131 KKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRF 188
             + +   E   L +  HP +  LY          +VMEY  GG+L  Y  +      R 
Sbjct: 58  DVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKN----GRL 113

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE 248
               +                            R    + L  ++Y H   +V+RDLKPE
Sbjct: 114 DEKES----------------------------RRLFQQILSGVDYCHRHMVVHRDLKPE 145

Query: 249 NVLVREDGHIMLSDFDLS 266
           NVL+    +  ++DF LS
Sbjct: 146 NVLLDAHMNAKIADFGLS 163

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           ++  G+  Y APEVISG+   G  VD W+ GV LY +L GT PF  ++       I    
Sbjct: 173 RTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGI 232

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              P+  ++ S        +  L+  +L  +P KR  ++K   +I+ HE+FK
Sbjct: 233 FYTPQ-YLNPS--------VISLLKHMLQVDPMKRA-TIK---DIREHEWFK 271

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 84.0 bits (208), Expect = 7e-18
 Identities = 49/240 (20%), Positives = 78/240 (32%), Gaps = 55/240 (22%)

Query: 31  NLSFGSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQG--RVGLDHFRL 88
           ++S G   S  SL  + ++    L     P   +       ++L+      R  +     
Sbjct: 4   SVSSGQAHSLASLAKTWSSGSAKLQ-RLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTH 62

Query: 89  LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLD 147
             R+G G  G V+    ++   G      A+K V          L    +E++     L 
Sbjct: 63  QPRVGRGSFGEVHRM--KDKQTGF---QCAVKKVR---------LEVFRVEELVACAGLS 108

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFLLFFFF 204
            P +  LY       +  + ME   GG    L         K+ G               
Sbjct: 109 SPRIVPLYGAVREGPWVNIFMELLEGGSLGQLI--------KQMGCLPEDRA-------- 152

Query: 205 YNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG-HIMLSDF 263
                             +Y  + L  LEYLH   I++ D+K +NVL+  DG    L DF
Sbjct: 153 -----------------LYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDF 195

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
                  GT  ++APEV+ G+   + VD W+    +  ML G  P+         + I  
Sbjct: 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS 270

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +P     I  S +            I + L K P  R
Sbjct: 271 EPPPIREIPPSCAPLT------AQAIQEGLRKEPVHR 301

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 83.5 bits (207), Expect = 8e-18
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 355 KSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           K+  G+  Y APEVI+G+   G  VD W+ G+ LY ML G  PF  E        +    
Sbjct: 165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCV 224

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              P   +S           Q LI +++V +P +RI +++   EI+R  +F 
Sbjct: 225 YVMPDF-LSPG--------AQSLIRRMIVADPMQRI-TIQ---EIRRDPWFN 263

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 42/195 (21%)

Query: 74  LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL 133
           +  ++  +G   + +   LG G  G V L    +          A+K + R+ L      
Sbjct: 1   MAISKRHIG--PYIIRETLGEGSFGKVKLA--THYKTQQK---VALKFISRQLLKKSDMH 53

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGIS 191
            R + E   L +L HP +  LY          +V+EY  GG+L  Y   +    KR    
Sbjct: 54  MRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK----KRMTED 108

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
                                         R +  + + A+EY H   IV+RDLKPEN+L
Sbjct: 109 EG----------------------------RRFFQQIICAIEYCHRHKIVHRDLKPENLL 140

Query: 252 VREDGHIMLSDFDLS 266
           + ++ ++ ++DF LS
Sbjct: 141 LDDNLNVKIADFGLS 155

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT----LINIL 410
            +   T  Y+APEV+  + +  + D W+LGV +Y +L G  PF   +           I 
Sbjct: 221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR 280

Query: 411 KKPLTFPRIGVSSSKEFEEV---VKLQDLISKLLVKNPKKRI 449
                FP      + E+ EV   VK   LI  LL   P +R+
Sbjct: 281 MGQYEFP------NPEWSEVSEEVK--MLIRNLLKTEPTQRM 314

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 49/218 (22%)

Query: 57  SHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF 116
              P       +     L+  +  +  D+    + LG G  G V     +       Q  
Sbjct: 35  PPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRT-----QEK 89

Query: 117 YAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE----ASHYSCLVMEYC 171
           +A+K++     A R        E  +       P +  +   +E          +VME  
Sbjct: 90  FALKMLQDCPKARR--------EVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 141

Query: 172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA 231
            GG+L++  Q +  + F    A  +   +                              A
Sbjct: 142 DGGELFSRIQDRGDQAFTEREASEIMKSI----------------------------GEA 173

Query: 232 LEYLHMMGIVYRDLKPENVLV---REDGHIMLSDFDLS 266
           ++YLH + I +RD+KPEN+L    R +  + L+DF  +
Sbjct: 174 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 43/187 (22%)

Query: 84  DHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
           D + L   +GSG    V    C  +   V       A+K ++ E           ++ K 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKV-------AIKRINLEKCQTSMD----ELLKE 63

Query: 142 ILTM--LDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFV 196
           I  M    HP + + Y  F       LVM+   GG   D+      +   + G+     +
Sbjct: 64  IQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTI 123

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
             +L                          E L  LEYLH  G ++RD+K  N+L+ EDG
Sbjct: 124 ATIL-------------------------REVLEGLEYLHKNGQIHRDVKAGNILLGEDG 158

Query: 257 HIMLSDF 263
            + ++DF
Sbjct: 159 SVQIADF 165

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 349 PINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
             N   K+FVGT  ++APEV+   +G+    D W+ G+   E+  G  P+      K L+
Sbjct: 178 TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM 237

Query: 408 NILKKP---LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
             L+     L          K++ +  +   +IS  L K+P+KR      + E+ RH+FF
Sbjct: 238 LTLQNDPPSLETGVQDKEMLKKYGKSFR--KMISLCLQKDPEKR----PTAAELLRHKFF 291

Query: 465 K 465
           +
Sbjct: 292 Q 292

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 36/176 (20%)

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL 151
           LG G  G VY    R+    +     A+K +        + LH    E  +   L H  +
Sbjct: 30  LGKGTYGIVYAG--RDLSNQV---RIAIKEIPERDSRYSQPLHE---EIALHKHLKHKNI 81

Query: 152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFV 211
                 F  + +  + ME  PGG L A  + + G                          
Sbjct: 82  VQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGP-----------------------LK 118

Query: 212 HTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-REDGHIMLSDFDLS 266
             + T+     FY  + L  L+YLH   IV+RD+K +NVL+    G + +SDF  S
Sbjct: 119 DNEQTI----GFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTS 170

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 350 INARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE-KTL 406
           IN  +++F GT +Y+APE+I    +G+G A D W+LG  + EM  G  PF         +
Sbjct: 176 INPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM 235

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
             +    +  P I  S S E       +  I K    +P KR
Sbjct: 236 FKVGMFKVH-PEIPESMSAEA------KAFILKCFEPDPDKR 270

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 58/205 (28%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           +     + LG G  G V          G P    A+K +  +          A ME  +L
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQ---GRP---VAVKRMLID------FCDIALMEIKLL 62

Query: 144 TMLD-HPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQ--RQPGKRFGISSAKFVFF 198
           T  D HP +   Y       +  + +E C     DL  ++    +  K     +   +  
Sbjct: 63  TESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 122

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV------ 252
                                       +    + +LH + I++RDLKP+N+LV      
Sbjct: 123 ----------------------------QIASGVAHLHSLKIIHRDLKPQNILVSTSSRF 154

Query: 253 -------REDGHIMLSDFDLSFKCD 270
                   E+  I++SDF L  K D
Sbjct: 155 TADQQTGAENLRILISDFGLCKKLD 179

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 79.1 bits (195), Expect = 5e-16
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 16/123 (13%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGH-------GSAVDWWTLGVFLYEML-YGTTPFKGENNE 403
               +  GT  + APE++    +         ++D +++G   Y +L  G  PF  + + 
Sbjct: 187 TNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR 246

Query: 404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
           ++  NI++   +   +     +         DLIS+++  +P KR      ++++ RH  
Sbjct: 247 ES--NIIRGIFSLDEMKCLHDRSLIAEAT--DLISQMIDHDPLKRP----TAMKVLRHPL 298

Query: 464 FKG 466
           F  
Sbjct: 299 FWP 301

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 352 ARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLI 407
           +R     GT  ++APE++S    +     VD ++ G   Y ++  G+ PF      +  I
Sbjct: 181 SRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI 240

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
            +    L                   ++LI K++  +P+KR      +  + +H FF  
Sbjct: 241 LLGACSLDCLHPEKHEDVIA------RELIEKMIAMDPQKRP----SAKHVLKHPFFWS 289

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 40/197 (20%), Positives = 60/197 (30%), Gaps = 48/197 (24%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            VG   F     LG G  G +    + +          A+K +  E          AD E
Sbjct: 20  IVGKISFCPKDVLGHGAEGTIVYRGMFD---NRD---VAVKRILPE------CFSFADRE 67

Query: 140 KVILTMLD-HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
             +L   D HP +   +   +   +  + +E C    L      Q            +  
Sbjct: 68  VQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC-AATL-QEYVEQKDFAHLGLEPITLLQ 125

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH- 257
                                       +T   L +LH + IV+RDLKP N+L+      
Sbjct: 126 ----------------------------QTTSGLAHLHSLNIVHRDLKPHNILISMPNAH 157

Query: 258 ----IMLSDFDLSFKCD 270
                M+SDF L  K  
Sbjct: 158 GKIKAMISDFGLCKKLA 174

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 83.4 bits (206), Expect = 4e-17
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 56/196 (28%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV----DREALAIRKKLH 134
           G +    + +   +  G +G +YL   RN    +      +K +    D EA A      
Sbjct: 75  GDIVAGQYEVKGCIAHGGLGWIYLALDRN----VNGRPVVLKGLVHSGDAEAQA------ 124

Query: 135 RADMEKVILTMLDHPFLPTLY-------AEFEASHYSCLVMEYCPGGDLYAARQRQPGKR 187
            A  E+  L  + HP +  ++          +   Y  +VMEY  G  L  ++ +    +
Sbjct: 125 MAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGY--IVMEYVGGQSLKRSKGQ----K 178

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
             ++ A                              Y  E L AL YLH +G+VY DLKP
Sbjct: 179 LPVAEA----------------------------IAYLLEILPALSYLHSIGLVYNDLKP 210

Query: 248 ENVLVREDGHIMLSDF 263
           EN+++ E+  + L D 
Sbjct: 211 ENIMLTEEQ-LKLIDL 225

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
              GT  + APE++   G   A D +T+G  L  +        G   +         P  
Sbjct: 236 YLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDLPTRNGRYVDGL-------PED 287

Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            P +    S           L+ + +  +P++R  +
Sbjct: 288 DPVLKTYDS--------YGRLLRRAIDPDPRQRFTT 315

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 58/215 (26%)

Query: 74  LRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL 133
           L+  +  +  D+    + LG G  G V     +       Q  +A+K++     A R   
Sbjct: 8   LQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRT-----QEKFALKMLQDCPKARR--- 59

Query: 134 HRADMEKVILT-MLDHPFLPTLYAEFE----ASHYSCLVMEYCPGGDLYAARQRQPGKRF 188
                E  +       P +  +   +E          +VME   GG+L++  Q +  + F
Sbjct: 60  -----EVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAF 114

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE 248
               A  +   +                              A++YLH + I +RD+KPE
Sbjct: 115 TEREASEIMKSI----------------------------GEAIQYLHSINIAHRDVKPE 146

Query: 249 NVLVR---EDGHIMLSDFDL---------SFKCDV 271
           N+L      +  + L+DF              CD+
Sbjct: 147 NLLYTSKRPNAILKLTDFGFAKETTGEKYDKSCDM 181

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 364 LAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT----LINILKKPLTFPR- 418
            A E   G+ +  + D W+LGV +Y +L G  PF   +           I      FP  
Sbjct: 166 FAKETT-GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNP 224

Query: 419 --IGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
               VS        VK   LI  LL   P +R+
Sbjct: 225 EWSEVSEE------VK--MLIRNLLKTEPTQRM 249

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 51/232 (21%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            +G    R+ R L  G    VY  Q            YA+K +        +K      E
Sbjct: 24  ELGELRLRVRRVLAEGGFAFVYEAQDVGS-----GREYALKRLLSNE---EEKNRAIIQE 75

Query: 140 KVILTML-DHPFLPTLYAEFEASHYS--------CLVMEYCPGGDLYAARQRQPGKRFGI 190
              +  L  HP +    +                 L+ E C G  +   ++ +       
Sbjct: 76  VCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSC 135

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IVYRDLKPE 248
            +   +F+                            +T  A++++H     I++RDLK E
Sbjct: 136 DTVLKIFY----------------------------QTCRAVQHMHRQKPPIIHRDLKVE 167

Query: 249 NVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPM 300
           N+L+   G I L DF  +      P           +E+     I    TPM
Sbjct: 168 NLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEE----EITRNTTPM 215

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 357 FVGTHEYLAPEVI---SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
              T  Y  PE+I   S    G   D W LG  LY + +   PF+     +    I+   
Sbjct: 210 RNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR----IVNGK 265

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            + P      +           LI  +L  NP++R+
Sbjct: 266 YSIPPHDTQYT-------VFHSLIRAMLQVNPEERL 294

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 29/187 (15%), Positives = 48/187 (25%), Gaps = 41/187 (21%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLC--QIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA 136
            R+    +RLL   G       +       +  V       A+  VD + +     L   
Sbjct: 26  ARIANGRYRLLIFHGGVPPLQFWQALDTALDRQV-------ALTFVDPQGVLPDDVLQET 78

Query: 137 DMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
               + L+ +D P +  +           +V E+  GG L       P     I      
Sbjct: 79  LSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIR----- 133

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                                             A +  H  G+      P  V V  DG
Sbjct: 134 ---------------------------AMQSLAAAADAAHRAGVALSIDHPSRVRVSIDG 166

Query: 257 HIMLSDF 263
            ++L+  
Sbjct: 167 DVVLAYP 173

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 11/92 (11%)

Query: 358 VGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFP 417
           +     +              D   +G  LY +L    P         L    +     P
Sbjct: 170 LAYPATMPDA-------NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQP 222

Query: 418 RIGVSSSKEFEEV-VKLQDLISKLLVKNPKKR 448
              +  +    ++  ++  + ++ +  +   R
Sbjct: 223 ---IEPADIDRDIPFQISAVAARSVQGDGGIR 251

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 53/216 (24%)

Query: 58  HKPHKANQAAWEAMKRLRRAQGRVG--LDHFRLLRRLGSGDIGNVYL--CQIRNPMVGLP 113
           H  H ++            A+ R G     +RL R +G G +G+VY     +R  +V   
Sbjct: 6   HHHHHSSGLVPRGSHMDGTAESREGTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIV--- 62

Query: 114 QCFYAMKVVDREALA----IRKKLHRADMEKVILTMLDHPFLPTLY--AEFEASHYSCLV 167
               A+K++  E L+     R ++ R   E      L  P +  ++   E +   Y  + 
Sbjct: 63  ----ALKLM-SETLSSDPVFRTRMQR---EARTAGRLQEPHVVPIHDFGEIDGQLY--VD 112

Query: 168 MEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE 227
           M    G DL AA  R+ G       A  +                              +
Sbjct: 113 MRLINGVDL-AAMLRRQG-PLAPPRAVAI----------------------------VRQ 142

Query: 228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
              AL+  H  G  +RD+KPEN+LV  D    L DF
Sbjct: 143 IGSALDAAHAAGATHRDVKPENILVSADDFAYLVDF 178

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
           + VGT  Y+APE  S        D + L   LYE L G+ P++G+      ++++   + 
Sbjct: 194 NTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ-----LSVMGAHIN 248

Query: 416 FPRIGVSS-----SKEFEEVVKLQDLISKLLVKNPKKR 448
                 S+        F+ V      I++ + KNP+ R
Sbjct: 249 QAIPRPSTVRPGIPVAFDAV------IARGMAKNPEDR 280

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 41/189 (21%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-ALAIRKKLHRADM 138
               +  + L  +G G  G+V     +           A+K +        +K+L    M
Sbjct: 18  DFTAEDLKDLGEIGRGAYGSVNKMVHKPS-----GQIMAVKRIRSTVDEKEQKQLL---M 69

Query: 139 E-KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKF 195
           +  V++   D P++   Y          + ME         Y                  
Sbjct: 70  DLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEI--- 126

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVRE 254
                       LG +                T+ AL +L   + I++RD+KP N+L+  
Sbjct: 127 ------------LGKI-------------TLATVKALNHLKENLKIIHRDIKPSNILLDR 161

Query: 255 DGHIMLSDF 263
            G+I L DF
Sbjct: 162 SGNIKLCDF 170

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 14/127 (11%)

Query: 345 VVAEPINARSKS-FVGTHEYLAPEVISGQGHGSA----VDWWTLGVFLYEMLYGTTPFKG 399
           +  + +++ +K+   G   Y+APE I             D W+LG+ LYE+  G  P+  
Sbjct: 172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPK 231

Query: 400 ENNEKTLIN-ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI 458
            N+    +  ++K     P++  S  +EF       + ++  L K+  KR    K   E+
Sbjct: 232 WNSVFDQLTQVVKGDP--PQLSNSEEREFSP--SFINFVNLCLTKDESKR-PKYK---EL 283

Query: 459 KRHEFFK 465
            +H F  
Sbjct: 284 LKHPFIL 290

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 46/187 (24%)

Query: 84  DHFRLLRRLGSG--DIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
             + LL  +G G  D+  V     +     V        ++ ++ EA +  + +     E
Sbjct: 25  GCYELLTVIGKGFEDLMTVNLARYKPTGEYV-------TVRRINLEACS-NEMVTFLQGE 76

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFV 196
             +  + +HP +    A F A +   +V  +   G   DL             I+     
Sbjct: 77  LHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIA----- 131

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                                     +     L AL+Y+H MG V+R +K  ++L+  DG
Sbjct: 132 --------------------------YILQGVLKALDYIHHMGYVHRSVKASHILISVDG 165

Query: 257 HIMLSDF 263
            + LS  
Sbjct: 166 KVYLSGL 172

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 47/159 (29%)

Query: 350 INARSKSFVGTHEYLAPEVI--SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           ++   K  V    +L+PEV+  + QG+ +  D +++G+   E+  G  PFK     + L+
Sbjct: 188 VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL 247

Query: 408 NILKKPLTFPRIGVSSSKEFEEVV------------------------------------ 431
             L   +  P +  +S+   EE+                                     
Sbjct: 248 EKLNGTV--PCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRT 305

Query: 432 ---KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
                   + + L +NP  R      +  +  H FFK I
Sbjct: 306 FSPHFHHFVEQCLQRNPDAR----PSASTLLNHSFFKQI 340

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 54/188 (28%)

Query: 84  DHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
           + F  L ++G G  G V+  +      +V       A+K++D E      +  +   E  
Sbjct: 22  ELFTKLEKIGKGSFGEVFKGIDNRTQKVV-------AIKIIDLEEAEDEIEDIQQ--EIT 72

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFF 198
           +L+  D P++   Y  +       ++MEY  GG   DL      +PG             
Sbjct: 73  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLL-----EPGP------------ 115

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAA---ETLLALEYLHMMGIVYRDLKPENVLVRED 255
                                +    A    E L  L+YLH    ++RD+K  NVL+ E 
Sbjct: 116 --------------------LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEH 155

Query: 256 GHIMLSDF 263
           G + L+DF
Sbjct: 156 GEVKLADF 163

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 68.1 bits (167), Expect = 9e-13
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 352 ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
            +  +FVGT  ++APEVI    + S  D W+LG+   E+  G  P    +  K L  I K
Sbjct: 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPK 233

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
                P +  + SK        ++ +   L K P  R      + E+ +H+F  
Sbjct: 234 NNP--PTLEGNYSKPL------KEFVEACLNKEPSFR----PTAKELLKHKFIL 275

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 46/190 (24%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRAD 137
           G +  D F  +  LG+G+ G V+    +           A K++  E   AIR ++    
Sbjct: 28  GELKDDDFEKISELGAGNGGVVFKVSHKPS-----GLVMARKLIHLEIKPAIRNQII--- 79

Query: 138 MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAK 194
            E  +L   + P++   Y  F +     + ME+  GG    +         K+ G     
Sbjct: 80  RELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL--------KKAGR---- 127

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG-IVYRDLKPENVLVR 253
                        LG V             +   +  L YL     I++RD+KP N+LV 
Sbjct: 128 --------IPEQILGKV-------------SIAVIKGLTYLREKHKIMHRDVKPSNILVN 166

Query: 254 EDGHIMLSDF 263
             G I L DF
Sbjct: 167 SRGEIKLCDF 176

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 37/91 (40%)

Query: 345 VVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           V  + I++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P    + ++
Sbjct: 178 VSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 237

Query: 405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQD 435
             +    +            +     +    
Sbjct: 238 LELMFGCQVEGDAAETPPRPRTPGRPLNKFG 268

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 74.2 bits (183), Expect = 6e-15
 Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 42/189 (22%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-ALAIRKKLHRADM 138
            V  D    +  LG G  G V   +             A+K +        +K+L    M
Sbjct: 3   EVKADDLEPIMELGRGAYGVVEKMRHVPS-----GQIMAVKRIRATVNSQEQKRLL---M 54

Query: 139 E-KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKF 195
           +  + +  +D PF  T Y          + ME         Y     +            
Sbjct: 55  DLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQT--------- 105

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPENVLVRE 254
                     + LG +             A   + ALE+LH  + +++RD+KP NVL+  
Sbjct: 106 -------IPEDILGKI-------------AVSIVKALEHLHSKLSVIHRDVKPSNVLINA 145

Query: 255 DGHIMLSDF 263
            G + + DF
Sbjct: 146 LGQVKMCDF 154

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 356 SFVGTHEYLAPEVISGQGHGSA----VDWWTLGVFLYEMLYGTTPFKGENNE-KTLINIL 410
              G   Y+APE I+ + +        D W+LG+ + E+     P+       + L  ++
Sbjct: 168 IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVV 227

Query: 411 KKPLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           ++P   P++     S EF       D  S+ L KN K+R  +     E+ +H FF 
Sbjct: 228 EEPS--PQLPADKFSAEF------VDFTSQCLKKNSKER-PTYP---ELMQHPFFT 271

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 43/183 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + + ++  LG G  G VY  + +           A KV++ ++    ++L    +E  IL
Sbjct: 19  EVWEIVGELGDGAFGKVYKAKNKET-----GALAAAKVIETKS---EEELEDYIVEIEIL 70

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKFVFFLL 200
              DHP++  L   +       +++E+CPGG    +     R       I          
Sbjct: 71  ATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDR-GLTEPQIQ--------- 120

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                     + L AL +LH   I++RDLK  NVL+  +G I L
Sbjct: 121 ----------------------VVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRL 158

Query: 261 SDF 263
           +DF
Sbjct: 159 ADF 161

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 350 INARSKSFVGTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
              +  SF+GT  ++APEV+         +    D W+LG+ L EM     P    N  +
Sbjct: 170 TLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR 229

Query: 405 TLINILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE 462
            L+ I K     P +   S  S EF      +D +   L KNP+ R      + ++  H 
Sbjct: 230 VLLKIAKSDP--PTLLTPSKWSVEF------RDFLKIALDKNPETR----PSAAQLLEHP 277

Query: 463 FFK 465
           F  
Sbjct: 278 FVS 280

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 45/188 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
                +   +G G  G V   + R   V       A+K ++ E+   RK       E   
Sbjct: 7   YKEIEVEEVVGRGAFGVVCKAKWRAKDV-------AIKQIESESE--RKAFIV---ELRQ 54

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L+ ++HP +  LY     +   CLVMEY  GG LY             ++A  + + L  
Sbjct: 55  LSRVNHPNIVKLYG-ACLNPV-CLVMEYAEGGSLYNVLHGA-EPLPYYTAAHAMSWCL-- 109

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM---GIVYRDLKPENVLVREDGHIM 259
                        +               + YLH M    +++RDLKP N+L+   G ++
Sbjct: 110 -----------QCS-------------QGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVL 145

Query: 260 -LSDFDLS 266
            + DF  +
Sbjct: 146 KICDFGTA 153

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 350 INARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG 399
           I     +  G+  ++APEV  G  +    D ++ G+ L+E++    PF  
Sbjct: 156 IQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 61/191 (31%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           + F +L +LG G  G+VY    +           A+K V  E+          D++++  
Sbjct: 29  EVFDVLEKLGEGSYGSVYKAIHKET-----GQIVAIKQVPVES----------DLQEIIK 73

Query: 142 ---ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGG---DLYAARQRQPGKRFGISSAKF 195
              I+   D P +   Y  +  +    +VMEYC  G   D+   R +             
Sbjct: 74  EISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT------------ 121

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAA---ETLLALEYLHMMGIVYRDLKPENVLV 252
                                        A     TL  LEYLH M  ++RD+K  N+L+
Sbjct: 122 -----------------------LTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILL 158

Query: 253 REDGHIMLSDF 263
             +GH  L+DF
Sbjct: 159 NTEGHAKLADF 169

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
              A+  + +GT  ++APEVI   G+    D W+LG+   EM  G  P+   +  + +  
Sbjct: 177 DTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFM 236

Query: 409 ILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I   P   P        S  F       D + + LVK+P++R      + ++ +H F +
Sbjct: 237 IPTNPP--PTFRKPELWSDNF------TDFVKQCLVKSPEQR----ATATQLLQHPFVR 283

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 46/199 (23%), Positives = 69/199 (34%), Gaps = 62/199 (31%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F L+  +G+G  G VY  +             A+KV+D             D E+ I 
Sbjct: 24  GIFELVELVGNGTYGQVYKGRHVKT-----GQLAAIKVMDVTG----------DEEEEIK 68

Query: 144 ---TML----DHPFLPTLYAEFEASHYSC------LVMEYCPGG---DLYAARQRQPGKR 187
               ML     H  + T Y  F   +         LVME+C  G   DL    +    K 
Sbjct: 69  QEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKE 128

Query: 188 FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKP 247
             I+                               +   E L  L +LH   +++RD+K 
Sbjct: 129 EWIA-------------------------------YICREILRGLSHLHQHKVIHRDIKG 157

Query: 248 ENVLVREDGHIMLSDFDLS 266
           +NVL+ E+  + L DF +S
Sbjct: 158 QNVLLTENAEVKLVDFGVS 176

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 27/163 (16%)

Query: 351 NARSKSFVGTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             R  +F+GT  ++APEVI         +    D W+LG+   EM  G  P    +  + 
Sbjct: 183 VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA 242

Query: 406 LINILKKPLTFPRI-GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF 464
           L  I + P   PR+     SK+F      Q  I   LVKN  +R      + ++ +H F 
Sbjct: 243 LFLIPRNP--APRLKSKKWSKKF------QSFIESCLVKNHSQR----PATEQLMKHPFI 290

Query: 465 KGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPY 507
           +        + +   +   D   + KKK    +  K E +  Y
Sbjct: 291 RD-----QPNERQVRIQLKDHIDRTKKK----RGEKDETEYEY 324

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 41/187 (21%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-ALAIRKKLHRADM 138
           +  ++    L  +GSG  G V+  + R           A+K + R       K++    M
Sbjct: 21  QAEINDLENLGEMGSGTCGQVWKMRFRKT-----GHVIAVKQMRRSGNKEENKRIL---M 72

Query: 139 E-KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
           +  V+L   D P++   +  F  +    + ME                   G  + K   
Sbjct: 73  DLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-----------------GTCAEKLKK 115

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDG 256
            +        LG +                 + AL YL    G+++RD+KP N+L+ E G
Sbjct: 116 RMQGPIPERILGKM-------------TVAIVKALYYLKEKHGVIHRDVKPSNILLDERG 162

Query: 257 HIMLSDF 263
            I L DF
Sbjct: 163 QIKLCDF 169

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 25/164 (15%)

Query: 345 VVAEPINARSK-SFVGTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFK 398
           +    ++ ++K    G   Y+APE I     +   +    D W+LG+ L E+  G  P+K
Sbjct: 171 ISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYK 230

Query: 399 GENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE 457
               + + L  +L++        +  S +F      Q  +   L K+ +KR        +
Sbjct: 231 NCKTDFEVLTKVLQEEPPLLPGHMGFSGDF------QSFVKDCLTKDHRKR----PKYNK 280

Query: 458 IKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQ 501
           +  H F        I+  +  EV     +  +  K   P+    
Sbjct: 281 LLEHSF--------IKRYETLEVDVASWFKDVMAKTESPRSGPS 316

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 43/182 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             +    ++G G  G VY                A++ ++     ++++  +  +   IL
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVAT-----GQEVAIRQMN-----LQQQPKKELIINEIL 69

Query: 144 TM--LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
            M    +P +      +       +VMEY  GG L             I+          
Sbjct: 70  VMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIA---------- 119

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                    E L ALE+LH   +++RD+K +N+L+  DG + L+
Sbjct: 120 ---------------------AVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT 158

Query: 262 DF 263
           DF
Sbjct: 159 DF 160

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           P  ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227

Query: 409 ILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I       P +      S  F      +D +++ L  + +KR      + E+ +H+F K
Sbjct: 228 IATNGT--PELQNPEKLSAIF------RDFLNRCLEMDVEKR----GSAKELLQHQFLK 274

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 54/227 (23%)

Query: 45  SSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQ 104
             S  D  +  N +     +    +           +      +  ++G+G  G V+  +
Sbjct: 9   PMSDYDIPTTENLYFQGAMDGDDMD-----------IPWCDLNIKEKIGAGSFGTVHRAE 57

Query: 105 IRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKVILTMLDHPFLPTLY-AEFEAS 161
                V       A+K++  +        +  R   E  I+  L HP +     A  +  
Sbjct: 58  WHGSDV-------AVKILMEQDFHAERVNEFLR---EVAIMKRLRHPNIVLFMGAVTQPP 107

Query: 162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNY 221
           +   +V EY   G LY    +   +   +   + +                         
Sbjct: 108 NL-SIVTEYLSRGSLYRLLHKSGAREQ-LDERRRLSM----------------------- 142

Query: 222 RFYAAETLLALEYLHMMG--IVYRDLKPENVLVREDGHIMLSDFDLS 266
              A +    + YLH     IV+R+LK  N+LV +   + + DF LS
Sbjct: 143 ---AYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           SKS  GT E++APEV+  +      D ++ GV L+E+     P+   N  + +  +  K 
Sbjct: 196 SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKC 255

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
                I  + + +      +  +I       P KR
Sbjct: 256 KR-LEIPRNLNPQ------VAAIIEGCWTNEPWKR 283

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 43/182 (23%), Positives = 61/182 (33%), Gaps = 39/182 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F  LR +G G  G VY  +             A+K +        +K      E   L
Sbjct: 54  KLFSDLREIGHGSFGAVYFARDVRN-----SEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 108

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGG--DLYAARQRQPGKRFGISSAKFVFFLLF 201
             L HP        +   H + LVMEYC G   DL    ++ P +   I+          
Sbjct: 109 QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKK-PLQEVEIA---------- 157

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                      L  L YLH   +++RD+K  N+L+ E G + L 
Sbjct: 158 ---------------------AVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLG 196

Query: 262 DF 263
           DF
Sbjct: 197 DF 198

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 352 ARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
           A + SFVGT  ++APEVI       +   VD W+LG+   E+     P    N    L +
Sbjct: 205 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 264

Query: 409 ILKKPLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I +     P +     S+ F      ++ +   L K P+ R      S  + +H F  
Sbjct: 265 IAQNES--PALQSGHWSEYF------RNFVDSCLQKIPQDR----PTSEVLLKHRFVL 310

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 53/187 (28%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
                  ++G G  G V L + +     V       A+K++D      R++L     E V
Sbjct: 45  LLLDSYVKIGEGSTGIVCLAREKHSGRQV-------AVKMMDLRK-QQRRELLFN--EVV 94

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           I+    H  +  +Y  +       ++ME+  GG L                         
Sbjct: 95  IMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGAL------------------------- 129

Query: 202 FFFYNNLGFVHTDVTLFFNYR-----FYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                      TD+                  L AL YLH  G+++RD+K +++L+  DG
Sbjct: 130 -----------TDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG 178

Query: 257 HIMLSDF 263
            + LSDF
Sbjct: 179 RVKLSDF 185

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 14/119 (11%)

Query: 349 PINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN 408
               + KS VGT  ++APEVIS   + + VD W+LG+ + EM+ G  P+  ++  + +  
Sbjct: 193 KDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 252

Query: 409 ILKKPLTFPRIGVSS--SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           +   P   P++  S   S         +D + ++LV++P++R      + E+  H F  
Sbjct: 253 LRDSPP--PKLKNSHKVSPVL------RDFLERMLVRDPQER----ATAQELLDHPFLL 299

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 37/183 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
                   LG G  G       R     +      MK + R     ++   +   E  ++
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVM-----VMKELIRFDEETQRTFLK---EVKVM 61

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L+HP +               + EY  GG L    +    +      ++ V F     
Sbjct: 62  RCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQ---YPWSQRVSFAK--- 115

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                     D+         A+     + YLH M I++RDL   N LVRE+ +++++DF
Sbjct: 116 ----------DI---------AS----GMAYLHSMNIIHRDLNSHNCLVRENKNVVVADF 152

Query: 264 DLS 266
            L+
Sbjct: 153 GLA 155

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 13/67 (19%), Positives = 31/67 (46%)

Query: 335 HDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT 394
            ++   +    + +P   +  + VG   ++APE+I+G+ +   VD ++ G+ L E++   
Sbjct: 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRV 219

Query: 395 TPFKGEN 401
                  
Sbjct: 220 NADPDYL 226

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 46/192 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEK 140
                 L +L     G ++  + +   +        +KV+          +  +    E 
Sbjct: 9   FKQLNFLTKLNENHSGELWKGRWQGNDI-------VVKVLKVRDWSTRKSRDFNE---EC 58

Query: 141 VILTMLDHPFLPTLYA---EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
             L +  HP +  +        A H   L+  + P G LY             S A    
Sbjct: 59  PRLRIFSHPNVLPVLGACQSPPAPHP-TLITHWMPYGSLYNVLHEGTNFVVDQSQA---- 113

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IVYRDLKPENVLVRED 255
                     + F              A +    + +LH +   I    L   +V++ ED
Sbjct: 114 ----------VKF--------------ALDMARGMAFLHTLEPLIPRHALNSRSVMIDED 149

Query: 256 GHIMLSDFDLSF 267
               +S  D+ F
Sbjct: 150 MTARISMADVKF 161

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGS---AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           S   +    ++APE +  +   +   + D W+  V L+E++    PF   +N +  + + 
Sbjct: 165 SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVA 224

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            + L  P I    S        +  L+   + ++P KR
Sbjct: 225 LEGLR-PTIPPGISPH------VSKLMKICMNEDPAKR 255

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 59/201 (29%)

Query: 83  LDHFRLLRRLGSGDIGNVYL--CQIRNPMVGLPQCFYAMKVV-------DREALAIRKKL 133
            +     +++G G  G V+         +V       A+K +       + E +   ++ 
Sbjct: 18  DNEIEYEKQIGKGGFGLVHKGRLVKDKSVV-------AIKSLILGDSEGETEMIEKFQEF 70

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYS-CLVMEYCPGGDLYAARQRQPGKRFGISS 192
            R   E  I++ L+HP +  LY      H    +VME+ P GDLY     +      I  
Sbjct: 71  QR---EVFIMSNLNHPNIVKLYG---LMHNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IVYRDLKPENV 250
           +  +  +L             D+              L +EY+      IV+RDL+  N+
Sbjct: 122 SVKLRLML-------------DIA-------------LGIEYMQNQNPPIVHRDLRSPNI 155

Query: 251 LVREDG-----HIMLSDFDLS 266
            ++           ++DF LS
Sbjct: 156 FLQSLDENAPVCAKVADFGLS 176

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 354 SKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPFKGENN 402
               +G  +++APE I  +   +    D ++  + LY +L G  PF   + 
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSY 233

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 43/189 (22%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYL--CQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA 136
           G++  + ++++ +LG G +  VYL    I N  V       A+K +        + L R 
Sbjct: 6   GKIINERYKIVDKLGGGGMSTVYLAEDTILNIKV-------AIKAIFIPPREKEETLKRF 58

Query: 137 DMEKVILTMLDHPFLPTLY--AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           + E    + L H  + ++    E +  +Y  LVMEY  G  L    +             
Sbjct: 59  EREVHNSSQLSHQNIVSMIDVDEEDDCYY--LVMEYIEGPTLSEYIESH----------- 105

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                         G +  D  + F       + L  +++ H M IV+RD+KP+N+L+  
Sbjct: 106 --------------GPLSVDTAINF-----TNQILDGIKHAHDMRIVHRDIKPQNILIDS 146

Query: 255 DGHIMLSDF 263
           +  + + DF
Sbjct: 147 NKTLKIFDF 155

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
             +GT +Y +PE   G+      D +++G+ LYEML G  PF GE    T ++I  K + 
Sbjct: 171 HVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE----TAVSIAIKHIQ 226

Query: 416 FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
                V++    +    L ++I +   K+   R
Sbjct: 227 DSVPNVTTDVRKDIPQSLSNVILRATEKDKANR 259

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 73/241 (30%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
           LL  +G G  G V+    +   V       A+K+         +K    + E     ML 
Sbjct: 12  LLECVGKGRYGEVWRGSWQGENV-------AVKIFSSRD----EKSWFRETELYNTVMLR 60

Query: 148 HPFLPTLY-AEFEASHYS---CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           H  +     ++  + H S    L+  Y   G LY   Q                      
Sbjct: 61  HENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTT------------------- 101

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--------MGIVYRDLKPENVLVRED 255
                      +      R         L +LH+          I +RDLK +N+LV+++
Sbjct: 102 -----------LDTVSCLRI-VLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKN 149

Query: 256 GHIMLSDFDLSFKCDVV-------------------PKLLRPKLSFEAIEKYEKCSIPSC 296
           G   ++D  L+                         P++L   +  +  + Y++  I + 
Sbjct: 150 GQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAF 209

Query: 297 A 297
            
Sbjct: 210 G 210

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 43/185 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEKV 141
               + +R+GSG  G VY  +    +        A+K+++  A      +       E  
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKWHGDV--------AVKMLNVTAPTPQQLQAFKN---EVG 72

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           +L    H  +        A     +V ++C G  LY        K       K +     
Sbjct: 73  VLRKTRHVNILLFMGYSTAPQL-AIVTQWCEGSSLYHHLHASETK---FEMKKLIDI--- 125

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                  A +T   ++YLH   I++RDLK  N+ + ED  + + 
Sbjct: 126 -----------------------ARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIG 162

Query: 262 DFDLS 266
           DF L+
Sbjct: 163 DFGLA 167

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHG---SAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           + + +   G+  ++APEVI  Q         D +  G+ LYE++ G  P+   NN   +I
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 235

Query: 408 NILKK---PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
            ++ +        ++  +  K       ++ L+++ L K   +R
Sbjct: 236 EMVGRGSLSPDLSKVRSNCPKR------MKRLMAECLKKKRDER 273

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            + +K+ +GT E++APE+   + +  +VD +  G+ + EM     P+    N   +   +
Sbjct: 184 ASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV 242

Query: 411 ---KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
               KP +F ++   +  E       +++I   + +N  +R        ++  H FF+
Sbjct: 243 TSGVKPASFDKV---AIPEV------KEIIEGCIRQNKDERY----SIKDLLNHAFFQ 287

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 43/188 (22%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
            +    +G G    VY       +        A   +    L  + +  R   E  +L  
Sbjct: 28  LKFDIEIGRGSFKTVYKG-----LDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKG 81

Query: 146 LDHP----FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           L HP    F  +  +  +      LV E    G L         KRF +   K +     
Sbjct: 82  LQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL-----KRFKVMKIKVL----- 131

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IVYRDLKPENVLV-REDGHI 258
                               R +  + L  L++LH     I++RDLK +N+ +    G +
Sbjct: 132 --------------------RSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSV 171

Query: 259 MLSDFDLS 266
            + D  L+
Sbjct: 172 KIGDLGLA 179

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 44/198 (22%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA------LAIRKKLHRADM 138
            +++   +G G  G +YL  + +           +KV   +       L   ++  + + 
Sbjct: 36  AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ 95

Query: 139 EKVILTM--LDHPFLPTLYA----EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
            +  +    L +  +P  +     +     Y  ++M+   G DL    +    KRF   S
Sbjct: 96  IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRF---S 150

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
            K V  L                         +   L  LEY+H    V+ D+K  N+L+
Sbjct: 151 RKTVLQL-------------------------SLRILDILEYIHEHEYVHGDIKASNLLL 185

Query: 253 --REDGHIMLSDFDLSFK 268
             +    + L D+ L+++
Sbjct: 186 NYKNPDQVYLVDYGLAYR 203

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 75/200 (37%)

Query: 86  FRLLRRLGSGDIGNVYL--CQIRNPMVGLPQCFYAMKVVD--------------REALAI 129
           + L   LG G +  V+L      +  V       A+KV+               REA   
Sbjct: 14  YELGEILGFGGMSEVHLARDLRDHRDV-------AVKVLRADLARDPSFYLRFRREAQNA 66

Query: 130 RKKLHRADMEKVILTMLDHPFLPTLY------AEFEASHYSCLVMEYCPGGDLYAARQRQ 183
                           L+HP +  +Y             Y  +VMEY  G  L      +
Sbjct: 67  --------------AALNHPAIVAVYDTGEAETPAGPLPY--IVMEYVDGVTLRDIVHTE 110

Query: 184 PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR 243
                                    G +     +        A+   AL + H  GI++R
Sbjct: 111 -------------------------GPMTPKRAIE-----VIADACQALNFSHQNGIIHR 140

Query: 244 DLKPENVLVREDGHIMLSDF 263
           D+KP N+++     + + DF
Sbjct: 141 DVKPANIMISATNAVKVMDF 160

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 234

Query: 413 PLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKR 448
               P       S + + VV       K L KNP+ R
Sbjct: 235 DPIPPSARHEGLSADLDAVV------LKALAKNPENR 265

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 52/197 (26%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA-DMEKV 141
                L   +G G  G VY        V       A+K    +      +       E  
Sbjct: 6   FAELTLEEIIGIGGFGKVYRAFWIGDEV-------AVKAARHDPDEDISQTIENVRQEAK 58

Query: 142 ILTMLDHPFLPTLY-AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           +  ML HP +  L     +  +  CLVME+  GG L      +      I     V + +
Sbjct: 59  LFAMLKHPNIIALRGVCLKEPNL-CLVMEFARGGPLNRVLSGKR-----IPPDILVNWAV 112

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG---IVYRDLKPENVLVREDGH 257
                         +                + YLH      I++RDLK  N+L+ +   
Sbjct: 113 -------------QIA-------------RGMNYLHDEAIVPIIHRDLKSSNILILQKVE 146

Query: 258 IM--------LSDFDLS 266
                     ++DF L+
Sbjct: 147 NGDLSNKILKITDFGLA 163

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
             S  G + ++APEVI         D W+ GV L+E+L G  PF+G +       +    
Sbjct: 171 KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK 230

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           L    I  +  + F +      L+      +P  R
Sbjct: 231 LA-LPIPSTCPEPFAK------LMEDCWNPDPHSR 258

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 43/186 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--AIRKKLHRADMEK 140
            +   +   +G G  G VY  +     V       A++++D E       K   R   E 
Sbjct: 32  FEQLEIGELIGKGRFGQVYHGRWHGE-V-------AIRLIDIERDNEDQLKAFKR---EV 80

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           +      H  +        +  +  ++   C G  LY+  +        +   K      
Sbjct: 81  MAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIV---LDVNKTRQI-- 135

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                   A E +  + YLH  GI+++DLK +NV   ++G +++
Sbjct: 136 ------------------------AQEIVKGMGYLHAKGILHKDLKSKNVFY-DNGKVVI 170

Query: 261 SDFDLS 266
           +DF L 
Sbjct: 171 TDFGLF 176

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 20/105 (19%)

Query: 355 KSFVGTHEYLAPEVISGQGHGS---------AVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
           +   G   +LAPE+I      +           D + LG   YE+     PFK +  E  
Sbjct: 192 RIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI 251

Query: 406 LINILK--KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           +  +    KP    +IG+           + D++        ++R
Sbjct: 252 IWQMGTGMKPN-LSQIGMGKE--------ISDILLFCWAFEQEER 287

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 46/192 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
              +LL     G  G V+  Q+ N  V       A+K+   +     K+  + + E   L
Sbjct: 24  MPLQLLEVKARGRFGCVWKAQLLNEYV-------AVKIFPIQD----KQSWQNEYEVYSL 72

Query: 144 TMLDHPFLPTLY-AEFEASHYS---CLVMEYCPGGDLYAARQRQP---GKRFGI--SSAK 194
             + H  +     AE   +       L+  +   G L    +       +   I  + A+
Sbjct: 73  PGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMAR 132

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                        L ++H D+                L+  H   I +RD+K +NVL++ 
Sbjct: 133 ------------GLAYLHEDIP--------------GLKDGHKPAISHRDIKSKNVLLKN 166

Query: 255 DGHIMLSDFDLS 266
           +    ++DF L+
Sbjct: 167 NLTACIADFGLA 178

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 56/198 (28%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EK 140
           LD+ +LL  +G G  G VY   +    V       A+KV            +R +   EK
Sbjct: 12  LDNLKLLELIGRGRYGAVYKGSLDERPV-------AVKVFSFA--------NRQNFINEK 56

Query: 141 VI--LTMLDHPFLPTLY-AEFEASHYS----CLVMEYCPGGDLYAARQRQPGK-----RF 188
            I  + +++H  +      +   +        LVMEY P G L               R 
Sbjct: 57  NIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRL 116

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPE 248
             S  + + +L            HT++    +Y+                 I +RDL   
Sbjct: 117 AHSVTRGLAYL------------HTELPRGDHYK---------------PAISHRDLNSR 149

Query: 249 NVLVREDGHIMLSDFDLS 266
           NVLV+ DG  ++SDF LS
Sbjct: 150 NVLVKNDGTCVISDFGLS 167

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 24/134 (17%)

Query: 339 LLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-------QGHGSAVDWWTLGVFLYEML 391
           L  +  V     +  + S VGT  Y+APEV+ G       +     VD + LG+  +E+ 
Sbjct: 170 LTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIF 229

Query: 392 YGTT-------------PFKGENNEKTLINILKKPLTF----PRIGVSSSKEFEEVVKLQ 434
              T              F+ E         ++  ++     P+   +  +    V  L+
Sbjct: 230 MRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLK 289

Query: 435 DLISKLLVKNPKKR 448
           + I     ++ + R
Sbjct: 290 ETIEDCWDQDAEAR 303

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 39/187 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            H + L++LG G+ G+V +C+  +P+        A+K +        +   R   E  IL
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRY-DPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEIL 96

Query: 144 TMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQ--RQPGKRFGISSAKFVFFL 199
             L H  +                L+MEY P G L   R   ++  +R           L
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL---RDYLQKHKERIDHIK------L 147

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           L +                       ++    +EYL     ++RDL   N+LV  +  + 
Sbjct: 148 LQY----------------------TSQICKGMEYLGTKRYIHRDLATRNILVENENRVK 185

Query: 260 LSDFDLS 266
           + DF L+
Sbjct: 186 IGDFGLT 192

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 56/196 (28%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD 147
           L   +G G  G V+  + R   V       A+K+         ++    + E     ML 
Sbjct: 46  LQESIGKGRFGEVWRGKWRGEEV-------AVKIFSSR----EERSWFREAEIYQTVMLR 94

Query: 148 HPFLPTLYA-----EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           H  +    A         +    LV +Y   G L+    R                    
Sbjct: 95  HENILGFIAADNKDNGTWTQL-WLVSDYHEHGSLFDYLNRYT------------------ 135

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--------MGIVYRDLKPENVLVRE 254
                       VT+    +  A  T   L +LHM          I +RDLK +N+LV++
Sbjct: 136 ------------VTVEGMIKL-ALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 182

Query: 255 DGHIMLSDFDLSFKCD 270
           +G   ++D  L+ + D
Sbjct: 183 NGTCCIADLGLAVRHD 198

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 42/197 (21%)

Query: 85  HFRLLRRLGSGDIGNVYL---CQIRNPMVGLPQCFYAMKV-------VDREALAIRKKLH 134
            ++L       + G +Y            G  +  +++K+        + +    R    
Sbjct: 43  QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKP 102

Query: 135 RADMEKVILTMLDHPFLPTLYAE-FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
               +   L       +PT          Y  LV+    G  L +A    P       S 
Sbjct: 103 LQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVL---SE 158

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV- 252
           + V  +                         A   L ALE+LH    V+ ++  EN+ V 
Sbjct: 159 RSVLQV-------------------------ACRLLDALEFLHENEYVHGNVTAENIFVD 193

Query: 253 -REDGHIMLSDFDLSFK 268
             +   + L+ +  +F+
Sbjct: 194 PEDQSQVTLAGYGFAFR 210

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 56/200 (28%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           R      ++++++G G  G V++ + R   V       A+KV         +     + E
Sbjct: 33  RTIAKQIQMVKQIGKGRYGEVWMGKWRGEKV-------AVKVFFTTE----EASWFRETE 81

Query: 140 KVILTMLDHPFLPTLYA-----EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
                ++ H  +    A         +    L+ +Y   G LY   +        + +  
Sbjct: 82  IYQTVLMRHENILGFIAADIKGTGSWTQL-YLITDYHENGSLYDYLKSTT-----LDAKS 135

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--------MGIVYRDLK 246
            +                            A  ++  L +LH           I +RDLK
Sbjct: 136 MLKL--------------------------AYSSVSGLCHLHTEIFSTQGKPAIAHRDLK 169

Query: 247 PENVLVREDGHIMLSDFDLS 266
            +N+LV+++G   ++D  L+
Sbjct: 170 SKNILVKKNGTCCIADLGLA 189

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 46/186 (24%), Positives = 66/186 (35%), Gaps = 38/186 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
            + + +R LG G  G V L        G  +   A+K +  +A    R    +   E  I
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMV-AVKALKADAGPQHRSGWKQ---EIDI 86

Query: 143 LTMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           L  L H  +       E   +    LVMEY P G L   R   P    G++       LL
Sbjct: 87  LRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSL---RDYLPRHSIGLAQ------LL 137

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
            F                      A +    + YLH    ++RDL   NVL+  D  + +
Sbjct: 138 LF----------------------AQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKI 175

Query: 261 SDFDLS 266
            DF L+
Sbjct: 176 GDFGLA 181

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 35/185 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            H + L++LG G+ G+V +C+  +P+        A+K +        +   R   E  IL
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRY-DPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEIL 65

Query: 144 TMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
             L H  +                L+MEY P G L    Q+   +   I   K + +   
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQY--- 119

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                   ++    +EYL     ++RDL   N+LV  +  + + 
Sbjct: 120 -----------------------TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIG 156

Query: 262 DFDLS 266
           DF L+
Sbjct: 157 DFGLT 161

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 55/196 (28%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD-- 137
           RVG + +RL R++GSG  G++YL                  +   E +AI+ +  +    
Sbjct: 6   RVG-NRYRLGRKIGSGSFGDIYL---------------GTDIAAGEEVAIKLECVKTKHP 49

Query: 138 ---MEKVILTMLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
              +E  I  M+     +PT+        Y+ +VME   G  L         ++F   S 
Sbjct: 50  QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKF---SL 104

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           K V  L                         A + +  +EY+H    ++RD+KP+N L+ 
Sbjct: 105 KTVLLL-------------------------ADQMISRIEYIHSKNFIHRDVKPDNFLMG 139

Query: 254 EDGH---IMLSDFDLS 266
                  + + DF L+
Sbjct: 140 LGKKGNLVYIIDFGLA 155

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 35/185 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            H + + +LG G+ G+V LC   +P+        A+K +       ++   R   E  IL
Sbjct: 23  RHLKYISQLGKGNFGSVELC-RYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQIL 78

Query: 144 TMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
             L   F+                LVMEY P G L    QR   +   + +++ + +   
Sbjct: 79  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRAR---LDASRLLLY--- 132

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                  +++    +EYL     V+RDL   N+LV  + H+ ++
Sbjct: 133 -----------------------SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA 169

Query: 262 DFDLS 266
           DF L+
Sbjct: 170 DFGLA 174

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 47/198 (23%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA------LAIRKKLHRADM 138
            + L +++GSG  G +YL              + +KV  +E       L   +++ + D 
Sbjct: 38  QWVLGKKIGSGGFGLIYLA--FPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDC 95

Query: 139 --EKVILTMLDHPFLPTLY----AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
             + +    LD+  +P  Y     EF+   Y  +VME   G DL     +     F    
Sbjct: 96  IKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTF---K 149

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
              V  L                             L  LEY+H    V+ D+K  N+L+
Sbjct: 150 KSTVLQL-------------------------GIRMLDVLEYIHENEYVHGDIKAANLLL 184

Query: 253 --REDGHIMLSDFDLSFK 268
             +    + L+D+ LS++
Sbjct: 185 GYKNPDQVYLADYGLSYR 202

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 47/193 (24%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            VG  H+++ RR+G G  G ++     N +        A+K   R +        +   E
Sbjct: 7   VVG-VHYKVGRRIGEGSFGVIFEG--TNLLNNQQ---VAIKFEPRRS-----DAPQLRDE 55

Query: 140 KVILTMLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
                +L     +P +Y   +   ++ LV++   G  L        G++F   S K V  
Sbjct: 56  YRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKF---SVKTVAM 110

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH- 257
                                     A + L  ++ +H   +VYRD+KP+N L+      
Sbjct: 111 A-------------------------AKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSK 145

Query: 258 ----IMLSDFDLS 266
               I + DF + 
Sbjct: 146 NANMIYVVDFGMV 158

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 38/238 (15%)

Query: 33  SFGSRRSSISLCSSSAADQTSLYNSHKPHKANQA-AWEAMKRLRRAQGRVGLDHFRLLRR 91
           + GS  S        +  Q  +  +  P   + A               +      L   
Sbjct: 2   AMGSGSSLSPTEGKGSGLQGHIIEN--PQYFSDACVHH-----------IKRRDIVLKWE 48

Query: 92  LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKVILTMLDHP 149
           LG G  G V+L +  N +    +   A+K + +EA     +  R D   E  +LTML H 
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKAL-KEA----SESARQDFQREAELLTMLQHQ 103

Query: 150 FLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
            +   +          +V EY   GDL    R   P  +            L        
Sbjct: 104 HIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPL-----GLG 158

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
             +             A++    + YL  +  V+RDL   N LV +   + + DF +S
Sbjct: 159 QLLA-----------VASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 52/194 (26%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL-------HRA 136
              + +R LG G  G V LC+                    E +A+ K L       H A
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDN-----------TGEQVAV-KSLKPESGGNHIA 68

Query: 137 DM--EKVILTMLDHPFLPTLYA--EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
           D+  E  IL  L H  +         +  +   L+ME+ P G L   ++  P  +  I+ 
Sbjct: 69  DLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSL---KEYLPKNKNKINL 125

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
            + + +                          A +    ++YL     V+RDL   NVLV
Sbjct: 126 KQQLKY--------------------------AVQICKGMDYLGSRQYVHRDLAARNVLV 159

Query: 253 REDGHIMLSDFDLS 266
             +  + + DF L+
Sbjct: 160 ESEHQVKIGDFGLT 173

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
           ++   +R +G G  G V+  +    +   P    A+K++  EA   ++    R   E  +
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR---EAAL 103

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFLLF 201
           +   D+P +  L          CL+ EY   GDL    R   P     +S +        
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS---TR 160

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
               +      +           A +    + YL     V+RDL   N LV E+  + ++
Sbjct: 161 ARVSSPGPPPLSCAEQL----CIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIA 216

Query: 262 DFDLS 266
           DF LS
Sbjct: 217 DFGLS 221

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 26/185 (14%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
           +   + R LG G  G VY    +  +   P+   A+K V+  A +  R +      E  +
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN---EASV 81

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVFFLLF 201
           +   +   +  L         + ++ME    GDL +  R  +P        A      + 
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 141

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                  A E    + YL+    V+RDL   N +V ED  + + 
Sbjct: 142 QM---------------------AGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG 180

Query: 262 DFDLS 266
           DF ++
Sbjct: 181 DFGMT 185

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 63/215 (29%)

Query: 62  KANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKV 121
             NQA    +K             F+ ++ LGSG  G VY          +      + V
Sbjct: 3   APNQALLRILKE----------TEFKKIKVLGSGAFGTVYKGLWIPEGEKVK-----IPV 47

Query: 122 VDREALAIRKKLHRADMEKV---------ILTMLDHPFLPTLYAE-FEASHYSCLVMEYC 171
                 AI K+L  A   K          ++  +D+P +  L      ++    L+ +  
Sbjct: 48  ------AI-KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ--LITQLM 98

Query: 172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA 231
           P G L    +        I S   + +                +         A      
Sbjct: 99  PFGCLLDYVREHKDN---IGSQYLLNWC-------------VQI---------AK----G 129

Query: 232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 41/193 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
             F L R LG G+ G+V   Q++       +   A+K++  + +A        +   E  
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKV--AVKMLKADIIASSD---IEEFLREAA 77

Query: 142 ILTMLDHPFLPTLYA------EFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSA 193
            +   DHP +  L                 +++ +   GDL  +    R     F +   
Sbjct: 78  CMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQ 137

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
             V F                            +    +EYL     ++RDL   N ++ 
Sbjct: 138 TLVRF--------------------------MVDIACGMEYLSSRNFIHRDLAARNCMLA 171

Query: 254 EDGHIMLSDFDLS 266
           ED  + ++DF LS
Sbjct: 172 EDMTVCVADFGLS 184

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 14/186 (7%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
            +  L + LG G+ G V      +          A+K++   A  +  + L     E  +
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLS---EFNV 79

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLL 200
           L  ++HP +  LY          L++EY   G L  +    R+ G  +  S        L
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                  L     D+  F      A +    ++YL  M +V+RDL   N+LV E   + +
Sbjct: 140 DHPDERALT--MGDLISF------AWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKI 191

Query: 261 SDFDLS 266
           SDF LS
Sbjct: 192 SDFGLS 197

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 53/191 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--- 140
               +  +LG G  G VY    +   +          V      A+ K L    ME    
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSL---------TV------AV-KTLKEDTMEVEEF 263

Query: 141 ----VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKF 195
                ++  + HP L  L           ++ E+   G+L    R+    +   +S+   
Sbjct: 264 LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQE---VSAVVL 320

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
           ++                           A +   A+EYL     ++R+L   N LV E+
Sbjct: 321 LYM--------------------------ATQISSAMEYLEKKNFIHRNLAARNCLVGEN 354

Query: 256 GHIMLSDFDLS 266
             + ++DF LS
Sbjct: 355 HLVKVADFGLS 365

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM----- 138
           +  RL  +LG G  G V++                 +V      AI K L    M     
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT----------TRV------AI-KTLKPGTMSPEAF 226

Query: 139 --EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
             E  ++  L H  L  LYA         +V EY   G L    + + GK   +   + V
Sbjct: 227 LQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKY--LRLPQLV 283

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                             +          A     + Y+  M  V+RDL+  N+LV E+ 
Sbjct: 284 DMAA-------------QI----------AS---GMAYVERMNYVHRDLRAANILVGENL 317

Query: 257 HIMLSDFDLS 266
              ++DF L+
Sbjct: 318 VCKVADFGLA 327

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM----- 138
           +  RL  +LG G  G V++                 +V      AI K L    M     
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGT----------TRV------AI-KTLKPGTMSPEAF 309

Query: 139 --EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
             E  ++  L H  L  LYA         +V EY   G L    + + GK   +   + V
Sbjct: 310 LQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKY--LRLPQLV 366

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                             +          A     + Y+  M  V+RDL+  N+LV E+ 
Sbjct: 367 DMAA-------------QI----------AS---GMAYVERMNYVHRDLRAANILVGENL 400

Query: 257 HIMLSDFDLS 266
              ++DF L+
Sbjct: 401 VCKVADFGLA 410

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 43/185 (23%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
               L R LG G  G V+L +  N      +   A+K +    LA RK   R   E  +L
Sbjct: 15  RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR---EAELL 71

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLLF 201
           T L H  +   Y          +V EY   GDL  +  R   P     +           
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKF-LRAHGPDAMILVDGQPRQ----- 125

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                      + +         A++    + YL     V+RDL   N LV  +  + + 
Sbjct: 126 ----AKGELGLSQMLHI------ASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIG 175

Query: 262 DFDLS 266
           DF +S
Sbjct: 176 DFGMS 180

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 49/239 (20%), Positives = 75/239 (31%), Gaps = 59/239 (24%)

Query: 38  RSSISLCSSSAADQTSLYNS-HKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGD 96
               +L       +   Y   H   +  +A     + +             + + +GSGD
Sbjct: 9   SGRENLYFQGKLPEPQFYAEPHTYEEPGRAGRSFTREIEA-------SRIHIEKIIGSGD 61

Query: 97  IGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV---------ILTMLD 147
            G V   ++R P          + V      AI K L     E+          I+   D
Sbjct: 62  SGEVCYGRLRVPGQR------DVPV------AI-KALKAGYTERQRRDFLSEASIMGQFD 108

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           HP +  L         + +V EY   G L    +   G+    +  + V  L        
Sbjct: 109 HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ---FTIMQLVGML-------- 157

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                  V          A     + YL  +G V+RDL   NVLV  +    +SDF LS
Sbjct: 158 -----RGV---------GA----GMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS 198

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 55/196 (28%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD-- 137
           RVG + FRL R++GSG  G +YL                  +   E +AI+ +  +    
Sbjct: 4   RVG-NKFRLGRKIGSGSFGEIYL---------------GTNIQTNEEVAIKLENVKTKHP 47

Query: 138 ---MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
               E  I  +L     +P +        Y+ LVM+   G  L         ++    S 
Sbjct: 48  QLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC-SRKL---SL 102

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           K V  L                         A + +  +E++H    ++RD+KP+N L+ 
Sbjct: 103 KTVLML-------------------------ADQMINRVEFVHSKSFLHRDIKPDNFLMG 137

Query: 254 EDGH---IMLSDFDLS 266
                  + + DF L+
Sbjct: 138 LGRRANQVYIIDFGLA 153

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 48/191 (25%), Positives = 69/191 (36%), Gaps = 58/191 (30%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           D ++L+R+LG G    V               F A+ + + E + + K L     +K+  
Sbjct: 36  DDYQLVRKLGRGKYSEV---------------FEAINITNNEKVVV-KILKPVKKKKIKR 79

Query: 142 ---ILTML-DHPFLPTLYAEF--EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF 195
              IL  L   P + TL        S    LV E+    D                    
Sbjct: 80  EIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQ----------------- 122

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-RE 254
                    Y  L             RFY  E L AL+Y H MGI++RD+KP NV++  E
Sbjct: 123 --------LYQTLTDYD--------IRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHE 166

Query: 255 DGHIMLSDFDL 265
              + L D+ L
Sbjct: 167 HRKLRLIDWGL 177

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 30/122 (24%)

Query: 358 VGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTP-FKGENNEKTLINILK---- 411
           V +  +  PE++   Q +  ++D W+LG  L  M++   P F G +N   L+ I K    
Sbjct: 191 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 250

Query: 412 -------------KPLTFPRI-GVSSSKEFEEVVKLQ----------DLISKLLVKNPKK 447
                            F  I G  S K +E  V  +          D + KLL  + + 
Sbjct: 251 EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQS 310

Query: 448 RI 449
           R+
Sbjct: 311 RL 312

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--- 140
                ++ +GSG  G V+L    N            KV      AI K +    M +   
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNK----------DKV------AI-KTIREGAMSEEDF 50

Query: 141 ----VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
                ++  L HP L  LY         CLV E+   G L    + Q G     ++   +
Sbjct: 51  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGL---FAAETLL 107

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                            DV           E    + YL    +++RDL   N LV E+ 
Sbjct: 108 GMC-------------LDV----------CE---GMAYLEEACVIHRDLAARNCLVGENQ 141

Query: 257 HIMLSDFDLS 266
            I +SDF ++
Sbjct: 142 VIKVSDFGMT 151

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 55.7 bits (135), Expect = 9e-09
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 51/190 (26%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--- 140
               +  +LG G  G VY    +           ++ V      A+ K L    ME    
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKY---------SLTV------AV-KTLKEDTMEVEEF 56

Query: 141 ----VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
                ++  + HP L  L           ++ E+   G+L    +    +          
Sbjct: 57  LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVV---- 112

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
             LL+                       A +   A+EYL     ++RDL   N LV E+ 
Sbjct: 113 --LLYM----------------------ATQISSAMEYLEKKNFIHRDLAARNCLVGENH 148

Query: 257 HIMLSDFDLS 266
            + ++DF LS
Sbjct: 149 LVKVADFGLS 158

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 49/194 (25%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQ-IRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM 138
            VG  +FR+ +++G G+ G + L + +          + A+K+   ++     +  +  +
Sbjct: 6   MVG-PNFRVGKKIGCGNFGELRLGKNLYTNE------YVAIKLEPMKS-----RAPQLHL 53

Query: 139 E-KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
           E +    +     +P +Y       Y+ +V+E   G  L         + F   S K V 
Sbjct: 54  EYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLC-DRTF---SLKTVL 108

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
            +                         A + +  +EY+H   ++YRD+KPEN L+   G+
Sbjct: 109 MI-------------------------AIQLISRMEYVHSKNLIYRDVKPENFLIGRPGN 143

Query: 258 -----IMLSDFDLS 266
                I + DF L+
Sbjct: 144 KTQQVIHIIDFALA 157

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 43/150 (28%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLIN------- 408
           + + T EY +PEV+ G   G   D W+    ++E++ G   F+ +       +       
Sbjct: 194 NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI 253

Query: 409 --ILKK-PLTFPRIGVSSSKEF-----------------------------EEVVKLQDL 436
             +L + P    R G  +   F                             +E  ++ D 
Sbjct: 254 IELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDF 313

Query: 437 ISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
           +S +L  +P+KR         +  H + K 
Sbjct: 314 LSPMLQLDPRKRA-DAG---GLVNHPWLKD 339

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 64/202 (31%)

Query: 86  FRLLRRLGSGDIGNVYLCQ-IRNPMVGLPQCFYAMKVV-----DREA----LAIRKKLHR 135
           + L+R+LG G    V+L + + N          AMK+V       EA    + + ++++ 
Sbjct: 21  YILVRKLGWGHFSTVWLAKDMVN------NTHVAMKIVRGDKVYTEAAEDEIKLLQRVND 74

Query: 136 ADMEKV-------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRF 188
           AD  K        IL +LDH F    +      H   +V E   G +L A  ++   +  
Sbjct: 75  ADNTKEDSMGANHILKLLDH-FN---HKGPNGVHV-VMVFEVL-GENLLALIKKYEHRGI 128

Query: 189 GISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKP 247
            +                               +  + + LL L+Y+H   GI++ D+KP
Sbjct: 129 PLIYV----------------------------KQISKQLLLGLDYMHRRCGIIHTDIKP 160

Query: 248 ENVLVRE------DGHIMLSDF 263
           ENVL+           I ++D 
Sbjct: 161 ENVLMEIVDSPENLIQIKIADL 182

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 44/190 (23%), Positives = 63/190 (33%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--- 140
              +LL+ +G G+ G+V L   R   V                 A+ K +      +   
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYRGNKV-----------------AV-KCIKNDATAQAFL 62

Query: 141 ---VILTMLDHPFLPTLYAE-FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
               ++T L H  L  L     E      +V EY   G L    + +     G       
Sbjct: 63  AEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC---- 118

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
             LL F                      + +   A+EYL     V+RDL   NVLV ED 
Sbjct: 119 --LLKF----------------------SLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN 154

Query: 257 HIMLSDFDLS 266
              +SDF L+
Sbjct: 155 VAKVSDFGLT 164

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 40/185 (21%), Positives = 64/185 (34%), Gaps = 20/185 (10%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
              R +  LG    G VY   +  P  G      A+K +  +A   +R++      E ++
Sbjct: 9   SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRH---EAML 65

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFLLF 201
              L HP +  L           ++  YC  GDL+     R P    G +          
Sbjct: 66  RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRT----- 120

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                       D           A+    +EYL    +V++DL   NVLV +  ++ +S
Sbjct: 121 ----VKSALEPPDFVHL------VAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKIS 170

Query: 262 DFDLS 266
           D  L 
Sbjct: 171 DLGLF 175

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 40/185 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EKV 141
           +   L  ++G G+ G V+  ++R           A+K              +A    E  
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTL-----VAVKSCRETLP----PDLKAKFLQEAR 164

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           IL    HP +  L           +VME   GGD     + +  +   +     +     
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGAR---LRVKTLLQM--- 218

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                    +    +EYL     ++RDL   N LV E   + +S
Sbjct: 219 -----------------------VGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKIS 255

Query: 262 DFDLS 266
           DF +S
Sbjct: 256 DFGMS 260

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 53/193 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV----DREAL---AIRKKL 133
           +++F+ + ++G G  G VY  + +    +V       A+K +    + E +   AIR   
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVV-------ALKKIRLDTETEGVPSTAIR--- 51

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
                E  +L  L+HP +  L       +   LV E+    DL             +   
Sbjct: 52  -----EISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLI 105

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           K   F L                            L  L + H   +++RDLKP+N+L+ 
Sbjct: 106 KSYLFQL----------------------------LQGLAFCHSHRVLHRDLKPQNLLIN 137

Query: 254 EDGHIMLSDFDLS 266
            +G I L+DF L+
Sbjct: 138 TEGAIKLADFGLA 150

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 42/225 (18%), Positives = 68/225 (30%), Gaps = 57/225 (25%)

Query: 51  QTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV 110
           +   +        NQA  +    +               + +G+G+ G VY   ++    
Sbjct: 18  ENLYFQGAMGSDPNQAVLKFTTEIHP-------SCVTRQKVIGAGEFGEVYKGMLKT--- 67

Query: 111 GLPQCFYAMKVVDREALAIRKKLHRADMEKV---------ILTMLDHPFLPTLYAEFEAS 161
                   + V      AI K L     EK          I+    H  +  L       
Sbjct: 68  --SSGKKEVPV------AI-KTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY 118

Query: 162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNY 221
               ++ EY   G L    + + G+    S  + V  L               +      
Sbjct: 119 KPMMIITEYMENGALDKFLREKDGE---FSVLQLVGML-------------RGI------ 156

Query: 222 RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
               A     ++YL  M  V+RDL   N+LV  +    +SDF LS
Sbjct: 157 ----AA---GMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLS 194

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 41/184 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           +  +L ++LG+G  G V++        V       A+K +   ++++   L     E  +
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKV-------AVKTMKPGSMSVEAFLA----EANV 236

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           +  L H  L  L+A         ++ E+   G L    +   G +  +        L+ F
Sbjct: 237 MKTLQHDKLVKLHAVVTKEPI-YIITEFMAKGSLLDFLKSDEGSKQPLPK------LIDF 289

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                                 +A+    + ++     ++RDL+  N+LV       ++D
Sbjct: 290 ----------------------SAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIAD 327

Query: 263 FDLS 266
           F L+
Sbjct: 328 FGLA 331

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 53/192 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR-NPMVGLPQCFYAMKVV----DREAL---AIRKKLH 134
           ++ +  L ++G G  G VY  Q              A+K +    + E +    IR    
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGETF-------ALKKIRLEKEDEGIPSTTIR---- 49

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
               E  IL  L H  +  LY          LV E+    DL         K+  +    
Sbjct: 50  ----EISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DL---------KKL-LDV-- 92

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                         G            + +  + L  + Y H   +++RDLKP+N+L+  
Sbjct: 93  -----------CEGGLESVTA------KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINR 135

Query: 255 DGHIMLSDFDLS 266
           +G + ++DF L+
Sbjct: 136 EGELKIADFGLA 147

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 34/137 (24%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           THE     Y AP+V+ G     + +D W++G    EM+ GT  F G +    L+ I +  
Sbjct: 158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRIL 217

Query: 412 ---KPLTFPRIGVSS------------SKEFEEVVK-----LQDLISKLLVKNPKKRIGS 451
                  +P   V+                +E  +K       DL+SK+L  +P +RI +
Sbjct: 218 GTPNSKNWP--NVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRI-T 274

Query: 452 LKGSVEIKRHEFFKGIN 468
            K   +   H +FK  N
Sbjct: 275 AK---QALEHAYFKENN 288

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK--- 140
           +  +L+ RLG+G  G V++                 KV      A+ K L +  M     
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGH----------TKV------AV-KSLKQGSMSPDAF 55

Query: 141 ----VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
                ++  L H  L  LYA         ++ EY   G L    +   G +  I+     
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINK---- 110

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
             LL                        AA+    + ++     ++RDL+  N+LV +  
Sbjct: 111 --LLDM----------------------AAQIAEGMAFIEERNYIHRDLRAANILVSDTL 146

Query: 257 HIMLSDFDLS 266
              ++DF L+
Sbjct: 147 SCKIADFGLA 156

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 63/215 (29%)

Query: 62  KANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKV 121
             NQA    +K             F+ ++ LGSG  G VY          +      + V
Sbjct: 3   APNQALLRILKE----------TEFKKIKVLGSGAFGTVYKGLWIPEGEKVK-----IPV 47

Query: 122 VDREALAIRKKLHRADMEKV---------ILTMLDHPFLPTLYAE-FEASHYSCLVMEYC 171
                 AI K+L  A   K          ++  +D+P +  L      ++    L+ +  
Sbjct: 48  ------AI-KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ--LITQLM 98

Query: 172 PGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA 231
           P G L    +        I S   + +                +         A      
Sbjct: 99  PFGCLLDYVREHKDN---IGSQYLLNWC-------------VQI---------AK----G 129

Query: 232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 40/192 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
           +   L + LG G+ G+V    ++       +   A+K +  +  + R+     +   E  
Sbjct: 34  NLLILGKILGEGEFGSVMEGNLKQEDGTSLKV--AVKTMKLDNSSQRE---IEEFLSEAA 88

Query: 142 ILTMLDHPFLPTLYA-----EFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAK 194
            +    HP +  L         +      +++ +   GDL  Y    R       I    
Sbjct: 89  CMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQT 148

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            + F                            +  L +EYL     ++RDL   N ++R+
Sbjct: 149 LLKF--------------------------MVDIALGMEYLSNRNFLHRDLAARNCMLRD 182

Query: 255 DGHIMLSDFDLS 266
           D  + ++DF LS
Sbjct: 183 DMTVCVADFGLS 194

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 46/186 (24%), Positives = 64/186 (34%), Gaps = 45/186 (24%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
              +LL+ +G G+ G+V L   R   V       A+K        I+          E  
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYRGNKV-------AVKC-------IKNDATAQAFLAEAS 238

Query: 142 ILTMLDHPFLPTLYAE-FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           ++T L H  L  L     E      +V EY   G L    + +     G         LL
Sbjct: 239 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC------LL 292

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
            F                      + +   A+EYL     V+RDL   NVLV ED    +
Sbjct: 293 KF----------------------SLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKV 330

Query: 261 SDFDLS 266
           SDF L+
Sbjct: 331 SDFGLT 336

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-LAIRKKLHRADMEKVI 142
           D  +L + LG G  G V                 A+K++   A  +  + L     E  I
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 83

Query: 143 LTMLD-HPFLPTLYAE-FEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFF 198
           L  +  H  +  L     +      +++E+C  G+L  Y   +R     + ++       
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
            L              +  +      + +    +E+L     ++RDL   N+L+ E   +
Sbjct: 144 FL----------TLEHLICY------SFQVAKGMEFLASRKCIHRDLAARNILLSEKNVV 187

Query: 259 MLSDFDLS 266
            + DF L+
Sbjct: 188 KICDFGLA 195

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 45/220 (20%), Positives = 74/220 (33%), Gaps = 58/220 (26%)

Query: 56  NSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQC 115
           + H      Q   E  K L          +  + + +G+G+ G V   +++ P       
Sbjct: 24  DPHTFEDPTQTVHEFAKELDA-------TNISIDKVVGAGEFGEVCSGRLKLPSKK---- 72

Query: 116 FYAMKVVDREALAIRKKLHRADMEKV---------ILTMLDHPFLPTLYAEFEASHYSCL 166
              + V      AI K L     EK          I+   DHP +  L      S    +
Sbjct: 73  --EISV------AI-KTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123

Query: 167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAA 226
           V EY   G L +  ++   +    +  + V  L               +         A+
Sbjct: 124 VTEYMENGSLDSFLRKHDAQ---FTVIQLVGML-------------RGI---------AS 158

Query: 227 ETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                ++YL  MG V+RDL   N+L+  +    +SDF L 
Sbjct: 159 ----GMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG 194

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 54/154 (35%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN-------------------- 402
           Y APEVI G  +G  +D W+LG  L E+L G     GE+                     
Sbjct: 265 YRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLD 324

Query: 403 ------------------------EKTLINILKKPLTFPRIGVSSSKEFEEVVK------ 432
                                   + +++    +       G   S+E+   +K      
Sbjct: 325 ASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPL 384

Query: 433 LQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG 466
             D + + L  +P  R+ +     +  RH + + 
Sbjct: 385 FLDFLKQCLEWDPAVRM-TPG---QALRHPWLRR 414

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 56/191 (29%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-----DREA----LAIRKKLHRA 136
           + +L+ +G G  G V                 A+K+V             + I + L + 
Sbjct: 99  YEVLKVIGKGSFGQVVKAYDHKV-----HQHVALKMVRNEKRFHRQAAEEIRILEHLRKQ 153

Query: 137 DME--KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           D +    ++ ML++         F   ++ C+  E     +LY   ++   + F      
Sbjct: 154 DKDNTMNVIHMLEN---------FTFRNHICMTFELL-SMNLYELIKKNKFQGF------ 197

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                       +L  V          R +A   L  L+ LH   I++ DLKPEN+L+++
Sbjct: 198 ------------SLPLV----------RKFAHSILQCLDALHKNRIIHCDLKPENILLKQ 235

Query: 255 DGH--IMLSDF 263
            G   I + DF
Sbjct: 236 QGRSGIKVIDF 246

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 53/192 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV--DRE----ALAIRKKLH 134
           ++ +  L +LG G    VY  + +  + +V       A+K +  + E      AIR    
Sbjct: 1   METYIKLDKLGEGTYATVYKGKSKLTDNLV-------ALKEIRLEHEEGAPCTAIR---- 49

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
               E  +L  L H  + TL+          LV EY    DL        G    + + K
Sbjct: 50  ----EVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDK-DL-KQYLDDCGNIINMHNVK 103

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
              F L                            L  L Y H   +++RDLKP+N+L+ E
Sbjct: 104 LFLFQL----------------------------LRGLAYCHRQKVLHRDLKPQNLLINE 135

Query: 255 DGHIMLSDFDLS 266
            G + L+DF L+
Sbjct: 136 RGELKLADFGLA 147

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 37/136 (27%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
            +E     Y  P+++ G     + +D W +G   YEM  G   F G   E+ L  I +  
Sbjct: 158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRIL 217

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVVKL-----QDLISKLLVKNPKKRI 449
                            K   +P+     ++              DL++KLL    + RI
Sbjct: 218 GTPTEETWPGILSNEEFKTYNYPK---YRAEALLSHAPRLDSDGADLLTKLLQFEGRNRI 274

Query: 450 GSLKGSVEIKRHEFFK 465
            S +   +  +H FF 
Sbjct: 275 -SAE---DAMKHPFFL 286

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 53/192 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR-NPMVGLPQCFYAMKVV----DREAL---AIRKKLH 134
           ++ ++ L ++G G  G VY  +     +V       A+K +    + E +   AIR    
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAKDSQGRIV-------ALKRIRLDAEDEGIPSTAIR---- 68

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
               E  +L  L HP + +L     +     LV E+    DL         K+  +    
Sbjct: 69  ----EISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DL---------KKV-LDE-- 111

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
                      N  G   + +      + Y  + L  + + H   I++RDLKP+N+L+  
Sbjct: 112 -----------NKTGLQDSQI------KIYLYQLLRGVAHCHQHRILHRDLKPQNLLINS 154

Query: 255 DGHIMLSDFDLS 266
           DG + L+DF L+
Sbjct: 155 DGALKLADFGLA 166

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 37/139 (26%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           THE     Y AP+V+ G     ++VD W++G    EM+ G   F G  ++  L  I    
Sbjct: 177 THEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSIL 236

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVVK-----LQDLISKLLVKNPKKRI 449
                            K  TF        K +  ++        DL+S +L  +P KRI
Sbjct: 237 GTPNPREWPQVQELPLWKQRTFQV---FEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRI 293

Query: 450 GSLKGSVEIKRHEFFKGIN 468
            S +   +   H +FK ++
Sbjct: 294 -SAR---DAMNHPYFKDLD 308

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 52/193 (26%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV--DRE----ALAIRKKLHR 135
             F+ L +LG+G    VY    +     V       A+K V  D E    + AIR     
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTTGVYV-------ALKEVKLDSEEGTPSTAIR----- 52

Query: 136 ADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSA 193
              E  ++  L H  +  LY      +   LV E+    DL  Y   +       G+   
Sbjct: 53  ---EISLMKELKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELN 108

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                                       +++  + L  L + H   I++RDLKP+N+L+ 
Sbjct: 109 --------------------------LVKYFQWQLLQGLAFCHENKILHRDLKPQNLLIN 142

Query: 254 EDGHIMLSDFDLS 266
           + G + L DF L+
Sbjct: 143 KRGQLKLGDFGLA 155

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 39/139 (28%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           + E     Y AP+V+ G     +++D W+ G  L EM+ G   F G N+E+ L  I    
Sbjct: 166 SSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIM 225

Query: 412 ---KPLTFPRIGVSSSKEFEEVVKLQ----------------------DLISKLLVKNPK 446
                  +P   V+   ++   ++ +                      D +  LL  NP 
Sbjct: 226 GTPNESLWP--SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPD 283

Query: 447 KRIGSLKGSVEIKRHEFFK 465
            R+ S K   +   H +F 
Sbjct: 284 MRL-SAK---QALHHPWFA 298

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 45/186 (24%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
                L+ LG+G  G V   + R    V       A+K++   +++  + +     E  +
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDV-------AIKMIKEGSMSEDEFI----EEAKV 72

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLL 200
           +  L H  L  LY          ++ EY   G L  Y    R+   RF          LL
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL---REMRHRFQTQQ------LL 123

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                     +   A+EYL     ++RDL   N LV + G + +
Sbjct: 124 EM----------------------CKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKV 161

Query: 261 SDFDLS 266
           SDF LS
Sbjct: 162 SDFGLS 167

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 33/126 (26%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL------ 410
           +V T  Y APEVI G G+   VD W++G  + EM+     F G +       ++      
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 282

Query: 411 -----------------------KKPLT--FPRIGVSSSKEFEEVVKLQ--DLISKLLVK 443
                                         FP     +  E  ++   Q  DL+SK+LV 
Sbjct: 283 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 342

Query: 444 NPKKRI 449
           +P KRI
Sbjct: 343 DPAKRI 348

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
             +   + L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 166 MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 23/188 (12%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
           +     + LG+G  G V        +        A+K++   A        R     E  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----HLTEREALMSELK 78

Query: 142 ILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFF 198
           +L+ L +H  +  L         + ++ EYC  GDL  +  R+R        S A     
Sbjct: 79  VLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI---- 134

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                   +         L      ++ +    + +L     ++RDL   N+L+      
Sbjct: 135 ------MEDDELALDLEDLL----SFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRIT 184

Query: 259 MLSDFDLS 266
            + DF L+
Sbjct: 185 KICDFGLA 192

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 32/183 (17%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
              RLL +LG G  G V   +   P         A+K +  + L+  + +     E   +
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSV--AVKCLKPDVLSQPEAMDDFIREVNAM 75

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             LDH  L  LY          +V E  P G L    ++  G            +     
Sbjct: 76  HSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGH---FLLGTLSRYA---- 127

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                      V          AE    + YL     ++RDL   N+L+     + + DF
Sbjct: 128 ---------VQV----------AE---GMGYLESKRFIHRDLAARNLLLATRDLVKIGDF 165

Query: 264 DLS 266
            L 
Sbjct: 166 GLM 168

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 33/126 (26%)

Query: 357 FVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL------ 410
           +V T  Y APEVI G G+   VD W++G  + EM+ G   F G ++      ++      
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 245

Query: 411 -----------------------KKPLT--FPRIGVSSSKEFEEVVKLQ--DLISKLLVK 443
                                         FP +   +  E  ++   Q  DL+SK+LV 
Sbjct: 246 CPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 305

Query: 444 NPKKRI 449
           +  KRI
Sbjct: 306 DASKRI 311

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
             +   + L  +++LH  GI++RDLKP N++V+ D  + + DF L+
Sbjct: 129 MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 45/186 (24%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPM-VGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           +   LL+ LGSG  G V L + +    V       A+K++   +++  +       E   
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDV-------AVKMIKEGSMSEDEFF----QEAQT 56

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFLL 200
           +  L HP L   Y      +   +V EY   G L  Y    R  GK    S       LL
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYL---RSHGKGLEPSQ------LL 107

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                     +    + +L     ++RDL   N LV  D  + +
Sbjct: 108 EM----------------------CYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKV 145

Query: 261 SDFDLS 266
           SDF ++
Sbjct: 146 SDFGMT 151

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 31/129 (24%)

Query: 363 YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK---------- 411
           Y APE+I G  +  + +D W+ G  + E++ G   F GE+    L+ I+K          
Sbjct: 207 YRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQI 266

Query: 412 -------KPLTFPRIGVSSSKEFEEVVKLQ------DLISKLLVKNPKKRIGSLKGSVEI 458
                      FP+I       F +V + +      DLIS+LL   P  R+ ++    E 
Sbjct: 267 KTMNPNYMEHKFPQI---RPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAI----EA 319

Query: 459 KRHEFFKGI 467
             H FF  +
Sbjct: 320 LCHPFFDEL 328

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 53/190 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIR-NPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
             +   + +G+G  G V+  ++  +  V       A+K V ++    R K  R   E  I
Sbjct: 40  IAYTNCKVIGNGSFGVVFQAKLVESDEV-------AIKKVLQDK---RFKN-R---ELQI 85

Query: 143 LTMLDHP--------FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           + ++ HP        F      + E      LV+EY P   +Y A  R   K        
Sbjct: 86  MRIVKHPNVVDLKAFFYSNGDKKDEVFLN--LVLEYVPE-TVYRA-SRHYAKLKQTMPML 141

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-R 253
            +                         + Y  + L +L Y+H +GI +RD+KP+N+L+  
Sbjct: 142 LI-------------------------KLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDP 176

Query: 254 EDGHIMLSDF 263
             G + L DF
Sbjct: 177 PSGVLKLIDF 186

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 41/140 (29%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---INILKKP------ 413
           Y APEVI   G   + D W+ G  L E+  G+  F+   + + L    +I++        
Sbjct: 225 YRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLY 284

Query: 414 -----------------LTFP--------RIGVSSSKEFEEVVK---LQDLISKLLVKNP 445
                            L +P           V       +++K     D +  +L  +P
Sbjct: 285 EATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDP 344

Query: 446 KKRIGSLKGSVEIKRHEFFK 465
             R  S     E+ +H+F +
Sbjct: 345 TLRP-SPA---ELLKHKFLE 360

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 47/208 (22%), Positives = 72/208 (34%), Gaps = 57/208 (27%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-----REA----LAIRKKLHRA 136
           F ++R++G G  G V LCQ  +      + +YA+KVV        +      I KK+   
Sbjct: 37  FLVIRKMGDGTFGRVLLCQHIDN-----KKYYAVKVVRNIKKYTRSAKIEADILKKIQND 91

Query: 137 DM-EKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF 195
           D+    I+              F    + CL+ E                   G S    
Sbjct: 92  DINNNNIVKYHGK---------FMYYDHMCLIFE-----------------PLGPS---- 121

Query: 196 VFFLLFFF--FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
               L+      N  GF   D+      + Y  E L AL YL  M + + DLKPEN+L+ 
Sbjct: 122 ----LYEIITRNNYNGFHIEDI------KLYCIEILKALNYLRKMSLTHTDLKPENILLD 171

Query: 254 EDGHIMLSDFDLSFKCDVVPKLLRPKLS 281
           +                   ++ R K +
Sbjct: 172 DPYFEKSLITVRRVTDGKKIQIYRTKST 199

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 50/245 (20%), Positives = 86/245 (35%), Gaps = 62/245 (25%)

Query: 35  GSRRSSISLCSSSAADQTSLYNSHKPHKANQAAW--EAMKRLRRAQGRVGLDHFRLLRRL 92
           G  R++    S     Q S + S K  +    +     +    +   R     +   + +
Sbjct: 3   GRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVI 62

Query: 93  GSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV----ILTMLDH 148
           G+G  G VY  ++ +                 E +AI KK+ +    K     I+  LDH
Sbjct: 63  GNGSFGVVYQAKLCD---------------SGELVAI-KKVLQDKRFKNRELQIMRKLDH 106

Query: 149 P--------FLPTLYAEFEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFL 199
                    F  +   + E      LV++Y P   +Y  AR     K             
Sbjct: 107 CNIVRLRYFFYSSGEKKDEVYLN--LVLDYVPE-TVYRVARHYSRAK------------- 150

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                   L  ++         + Y  +   +L Y+H  GI +RD+KP+N+L+  D  ++
Sbjct: 151 ------QTLPVIY--------VKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVL 196

Query: 260 -LSDF 263
            L DF
Sbjct: 197 KLCDF 201

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 31/127 (24%)

Query: 363 YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK---------- 411
           Y APE+I G     S++D W+ G  L E+L G   F G++    L+ I+K          
Sbjct: 222 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQI 281

Query: 412 -------KPLTFPRI-GVSSSKEF-----EEVVKLQDLISKLLVKNPKKRIGSLKGSVEI 458
                      FP+I     +K F      E +    L S+LL   P  R+  L    E 
Sbjct: 282 REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAI---ALCSRLLEYTPTARLTPL----EA 334

Query: 459 KRHEFFK 465
             H FF 
Sbjct: 335 CAHSFFD 341

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 54/192 (28%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV----DREAL---AIRKKL 133
           ++ +  + ++G G  G V+ C+ R    +V       A+K      D   +   A+R   
Sbjct: 2   MEKYEKIGKIGEGSYGVVFKCRNRDTGQIV-------AIKKFLESEDDPVIKKIALR--- 51

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
                E  +L  L HP L  L   F       LV EYC    +     R           
Sbjct: 52  -----EIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQR-------- 97

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                          G     V      +    +TL A+ + H    ++RD+KPEN+L+ 
Sbjct: 98  ---------------GVPEHLV------KSITWQTLQAVNFCHKHNCIHRDVKPENILIT 136

Query: 254 EDGHIMLSDFDL 265
           +   I L DF  
Sbjct: 137 KHSVIKLCDFGF 148

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 37/157 (23%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
             E     Y +PE++ G    G  VD W +G    E+L G   + G+++   L  I K  
Sbjct: 160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL 219

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVV-----KLQDLISKLLVKNPKKRI 449
                              +  P       +  E            L+   L  +P +R+
Sbjct: 220 GDLIPRHQQVFSTNQYFSGVKIPD--PEDMEPLELKFPNISYPALGLLKGCLHMDPTERL 277

Query: 450 GSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLY 486
            + +   ++  H +F+ I   +    K  + P  +LY
Sbjct: 278 -TCE---QLLHHPYFENIR-EIEDLAKEHDKPAENLY 309

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 54/193 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV----DREAL---AIRKKL 133
           +  +  L ++G G  G V+  + R  + +V       A+K V    D E +   A+R   
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIV-------ALKRVRLDDDDEGVPSSALR--- 50

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
                E  +L  L H  +  L+    +     LV E+C   DL         K++   S 
Sbjct: 51  -----EICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DL---------KKY-FDS- 93

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                        N       V      + +  + L  L + H   +++RDLKP+N+L+ 
Sbjct: 94  ------------CNGDLDPEIV------KSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN 135

Query: 254 EDGHIMLSDFDLS 266
            +G + L++F L+
Sbjct: 136 RNGELKLANFGLA 148

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 35/135 (25%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTP-FKGENNEKTLINILK- 411
           + E     Y  P+V+ G     +++D W+ G    E+     P F G + +  L  I + 
Sbjct: 159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRL 218

Query: 412 ----KPLTFPRIGVSSSKEFEEVVKLQ-----------------DLISKLLVKNPKKRIG 450
                   +P   ++   +++                       DL+  LL  NP +RI 
Sbjct: 219 LGTPTEEQWP--SMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRI- 275

Query: 451 SLKGSVEIKRHEFFK 465
           S +   E  +H +F 
Sbjct: 276 SAE---EALQHPYFS 287

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 44/162 (27%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
             E     Y APE++ G    G AVD W +G  + EM  G   F G+++   L +I+   
Sbjct: 182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCL 241

Query: 412 -----------------KPLTFPRIGVSSSKEFEEVVK-----LQDLISKLLVKNPKKRI 449
                              +  P I     +  E         + DL  K L  +P KR 
Sbjct: 242 GNLIPRHQELFNKNPVFAGVRLPEI--KEREPLERRYPKLSEVVIDLAKKCLHIDPDKRP 299

Query: 450 GSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYCKIKK 491
                  E+  H+FF        +     E  + +L  K++K
Sbjct: 300 ----FCAELLHHDFF--------QMDGFAERFSQELQLKVQK 329

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 54/193 (27%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV----DREAL---AIRKKL 133
           ++ +  L  +G G  G V  C+ +    +V       A+K      D + +   A+R   
Sbjct: 24  MEKYENLGLVGEGSYGMVMKCRNKDTGRIV-------AIKKFLESDDDKMVKKIAMR--- 73

Query: 134 HRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
                E  +L  L H  L  L    +      LV E+     +    +  P         
Sbjct: 74  -----EIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDH-TILDDLELFPN-------- 119

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                          G  +  V      + Y  + +  + + H   I++RD+KPEN+LV 
Sbjct: 120 ---------------GLDYQVV------QKYLFQIINGIGFCHSHNIIHRDIKPENILVS 158

Query: 254 EDGHIMLSDFDLS 266
           + G + L DF  +
Sbjct: 159 QSGVVKLCDFGFA 171

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 46/195 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFY--AMKVVDREALAIRKKLHRADMEKV 141
           +       LG G    ++    R              +KV+D+      +          
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE---AAS 64

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSAKFVFFL 199
           +++ L H  L   Y        + LV E+   G L  Y    ++      I         
Sbjct: 65  MMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYL---KKNKNCINILW------K 115

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           L                        A +   A+ +L    +++ ++  +N+L+  +    
Sbjct: 116 LEV----------------------AKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRK 153

Query: 260 --------LSDFDLS 266
                   LSD  +S
Sbjct: 154 TGNPPFIKLSDPGIS 168

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 28/129 (21%)

Query: 363 YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK---------- 411
           Y APE+I G  H  +AVD W++G    EM+ G   F+G+N+   L  I++          
Sbjct: 197 YRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVL 256

Query: 412 -------KPLTFPRI-GVSSSKEFEEVVKLQ-----DLISKLLVKNPKKRIGSLKGSVEI 458
                    +      G+  S  F +          DL+S LL   P++R+       E 
Sbjct: 257 RKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPY----EA 312

Query: 459 KRHEFFKGI 467
             H +F  +
Sbjct: 313 LCHPYFDEL 321

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 48/192 (25%)

Query: 83  LDHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMK-VVDREALAIR-----KKLH 134
           +D F++ R  G G  G V     +     V       A+K V+       R     + L 
Sbjct: 22  MDRFQVERMAGQGTFGTVQLGKEKSTGMSV-------AIKKVIQDPRFRNRELQIMQDLA 74

Query: 135 RADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
                 ++   L   F      +     Y  +VMEY P   L+   +    ++       
Sbjct: 75  VLHHPNIV--QLQSYFYTLGERDRRDI-YLNVVMEYVPD-TLHRCCRNYYRRQVAPPP-- 128

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--MGIVYRDLKPENVLV 252
                           +          + +  + + ++  LH+  + + +RD+KP NVLV
Sbjct: 129 ----------------IL--------IKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLV 164

Query: 253 -REDGHIMLSDF 263
              DG + L DF
Sbjct: 165 NEADGTLKLCDF 176

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 38/191 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
            +  L+R LG G  G VY  Q+            A+K +         +    D  ME +
Sbjct: 71  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEAL 126

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA---ARQRQPGKRFGISSAKFVFF 198
           I++  +H  +         S    +++E   GGDL +     + +P +   ++    +  
Sbjct: 127 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 186

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                     A +     +YL     ++RD+   N L+   G  
Sbjct: 187 --------------------------ARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG 220

Query: 259 ML---SDFDLS 266
            +    DF ++
Sbjct: 221 RVAKIGDFGMA 231

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 41/141 (29%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---INILKKP------ 413
           Y  PEVI   G     D W++G  L+E   G T F+   N + L     IL         
Sbjct: 205 YRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIH 264

Query: 414 ------------LTFPRIGVSSSKEFEEVVK---------------LQDLISKLLVKNPK 446
                       L +     S  +  +E  K               L DL+ ++L  +P 
Sbjct: 265 RTRKQKYFYKGGLVWD-ENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPA 323

Query: 447 KRIGSLKGSVEIKRHEFFKGI 467
           +RI +L    E   H FF G+
Sbjct: 324 QRI-TLA---EALLHPFFAGL 340

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 38/190 (20%), Positives = 61/190 (32%), Gaps = 57/190 (30%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD-----REA----LAIRKKLHRA 136
           + ++  LG G  G V  C          +   A+K++      REA    + + KK+   
Sbjct: 21  YEIVGNLGEGTFGKVVECLDHARG----KSQVALKIIRNVGKYREAARLEINVLKKIKEK 76

Query: 137 D--MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           D   + + + M D          F    + C+  E                   G +   
Sbjct: 77  DKENKFLCVLMSDW---------FNFHGHMCIAFE-----------------LLGKN--- 107

Query: 195 FVFFLLFFF--FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
                 F F    N   +    V      R  A +   AL +LH   + + DLKPEN+L 
Sbjct: 108 -----TFEFLKENNFQPYPLPHV------RHMAYQLCHALRFLHENQLTHTDLKPENILF 156

Query: 253 REDGHIMLSD 262
                  L +
Sbjct: 157 VNSEFETLYN 166

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 40/184 (21%)

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKVILT 144
                +G G  G VY   + +       C  A+K ++R           +    E +I+ 
Sbjct: 28  HFNEVIGRGHFGCVYHGTLLDNDGKKIHC--AVKSLNRIT----DIGEVSQFLTEGIIMK 81

Query: 145 MLDHPFLPTLYAE-FEASHYSCLVMEYCPGGDLYA-ARQRQPGKRFGISSAKFVFFLLFF 202
              HP + +L      +     +V+ Y   GDL    R          +    + F L  
Sbjct: 82  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETH----NPTVKDLIGFGL-- 135

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                       V         A      ++YL     V+RDL   N ++ E   + ++D
Sbjct: 136 -----------QV---------AK----GMKYLASKKFVHRDLAARNCMLDEKFTVKVAD 171

Query: 263 FDLS 266
           F L+
Sbjct: 172 FGLA 175

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 38/191 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
            +  L+R LG G  G VY  Q+            A+K +         +    D  ME +
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----SEQDELDFLMEAL 85

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYA---ARQRQPGKRFGISSAKFVFF 198
           I++  +H  +         S    ++ME   GGDL +     + +P +   ++    +  
Sbjct: 86  IISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 145

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                     A +     +YL     ++RD+   N L+   G  
Sbjct: 146 --------------------------ARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG 179

Query: 259 ML---SDFDLS 266
            +    DF ++
Sbjct: 180 RVAKIGDFGMA 190

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 47/263 (17%)

Query: 11  DYDSSSSSITVPDSSRSFMSNLSFGSRRSSISLCSSSAADQTSLYNSHKPHKA--NQAAW 68
              S ++ I VP  S       S     +S+   + S        N+     +  N    
Sbjct: 17  RRASVAAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELV 76

Query: 69  EAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-L 127
           +A++ +      + +        +G G  G VY   + +       C  A+K ++R   +
Sbjct: 77  QAVQHVVIGPSSLIV---HFNEVIGRGHFGCVYHGTLLDNDGKKIHC--AVKSLNRITDI 131

Query: 128 AIRKKLHRADMEKVILTMLDHPFLPTLYA---EFEASHYSCLVMEYCPGGDLYA-ARQRQ 183
               +      E +I+    HP + +L       E S    +V+ Y   GDL    R   
Sbjct: 132 GEVSQFLT---EGIIMKDFSHPNVLSLLGICLRSEGSPL--VVLPYMKHGDLRNFIRNET 186

Query: 184 PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR 243
                  +    + F L              V         A      +++L     V+R
Sbjct: 187 H----NPTVKDLIGFGL-------------QV---------AK----GMKFLASKKFVHR 216

Query: 244 DLKPENVLVREDGHIMLSDFDLS 266
           DL   N ++ E   + ++DF L+
Sbjct: 217 DLAARNCMLDEKFTVKVADFGLA 239

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 36/158 (22%), Positives = 50/158 (31%), Gaps = 59/158 (37%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE-NNE------------------ 403
           Y +PEV+ G  +  A+D W+LG  L EM  G   F G    +                  
Sbjct: 224 YRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILD 283

Query: 404 ----------------------------------KTLINILKKPLTFP--RIGVSSSKEF 427
                                             + L NIL      P  R    S    
Sbjct: 284 QAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTV 343

Query: 428 EEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            + +K +DLI ++L  +PK RI          +H FFK
Sbjct: 344 ADYLKFKDLILRMLDYDPKTRI-QPY---YALQHSFFK 377

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 58/195 (29%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-DREA--------LAIRKKLH 134
           D + +   +G G  G V     R       Q + A+K++ +++A        + + + ++
Sbjct: 54  DRYEIDSLIGKGSFGQVVKAYDRVE-----QEWVAIKIIKNKKAFLNQAQIEVRLLELMN 108

Query: 135 RADME--KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
           + D E    I+ +  H         F   ++ CLV E     +LY   +           
Sbjct: 109 KHDTEMKYYIVHLKRH---------FMFRNHLCLVFEML-SYNLYDLLRN---------- 148

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--MGIVYRDLKPENV 250
                        N  G            R +A +   AL +L    + I++ DLKPEN+
Sbjct: 149 ------------TNFRGVSLNLT------RKFAQQMCTALLFLATPELSIIHCDLKPENI 190

Query: 251 LVREDGH--IMLSDF 263
           L+       I + DF
Sbjct: 191 LLCNPKRSAIKIVDF 205

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 41/192 (21%), Positives = 64/192 (33%), Gaps = 52/192 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           +   L R +G G  G+V+     +P         A+ V      AI K       + V  
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENP------ALAV------AI-KTCKNCTSDSVRE 61

Query: 142 -------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
                   +   DHP +  L      +    ++ME C  G+L +  Q +      +  A 
Sbjct: 62  KFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYS---LDLAS 117

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            + +                          A +   AL YL     V+RD+   NVLV  
Sbjct: 118 LILY--------------------------AYQLSTALAYLESKRFVHRDIAARNVLVSS 151

Query: 255 DGHIMLSDFDLS 266
           +  + L DF LS
Sbjct: 152 NDCVKLGDFGLS 163

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 52/192 (27%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-- 141
           +   L R +G G  G+V+     +P         AM V      AI K       + V  
Sbjct: 390 ERIELGRCIGEGQFGDVHQGIYMSPENP------AMAV------AI-KTCKNCTSDSVRE 436

Query: 142 -------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
                   +   DHP +  L      +    ++ME C  G+L +  Q +      +  A 
Sbjct: 437 KFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKFS---LDLAS 492

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            +                           YA +   AL YL     V+RD+   NVLV  
Sbjct: 493 LIL--------------------------YAYQLSTALAYLESKRFVHRDIAARNVLVSS 526

Query: 255 DGHIMLSDFDLS 266
           +  + L DF LS
Sbjct: 527 NDCVKLGDFGLS 538

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 60/227 (26%)

Query: 53  SLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIR--NPMV 110
             ++ H      Q        +  A     +D +R + +LG G  G VY       N  V
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETV 62

Query: 111 GLPQCFYAMKVV----DREAL---AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY 163
                  A+K +    + E +   AIR        E  +L  L H  +  L +    +H 
Sbjct: 63  -------AIKRIRLEHEEEGVPGTAIR--------EVSLLKELQHRNIIELKSVIHHNHR 107

Query: 164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRF 223
             L+ EY    DL     + P     +   K   + L                       
Sbjct: 108 LHLIFEYAEN-DLKKYMDKNPD--VSMRVIKSFLYQL----------------------- 141

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLV-----REDGHIMLSDFDL 265
                +  + + H    ++RDLKP+N+L+      E   + + DF L
Sbjct: 142 -----INGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 35/135 (25%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK- 412
           THE     Y  PE++ G  H  ++VD W++     EML  T  F G++    L  I +  
Sbjct: 195 THEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVL 254

Query: 413 ----PLTFPRIGVSSSKEFEEVVKLQ------------------DLISKLLVKNPKKRIG 450
                 T+P  GV++  ++++                       DL++ +L  +P KRI 
Sbjct: 255 GLPDDTTWP--GVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRI- 311

Query: 451 SLKGSVEIKRHEFFK 465
           S K       H +F 
Sbjct: 312 SAK---NALEHPYFS 323

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 28/193 (14%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-------DREALAIRKKLHRA 136
           ++    + LGSG  G V                 A+K++       +REAL         
Sbjct: 45  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALM-------- 96

Query: 137 DMEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQ--RQPGKRFGISSA 193
             E  ++T L  H  +  L      S    L+ EYC  GDL       R   ++F     
Sbjct: 97  -SELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDL---LNYLRSKREKFSEDEI 152

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
           ++          +       D+  F      A +    +E+L     V+RDL   NVLV 
Sbjct: 153 EYENQKRLEEEEDLNVLTFEDLLCF------AYQVAKGMEFLEFKSCVHRDLAARNVLVT 206

Query: 254 EDGHIMLSDFDLS 266
               + + DF L+
Sbjct: 207 HGKVVKICDFGLA 219

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 39/140 (27%)

Query: 363 YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL---INILKKP------ 413
           Y APEVI   G     D W++G  L E   G T F   ++++ L     IL         
Sbjct: 200 YRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQ 259

Query: 414 ------------LTFP------RIGVSSSKEFEEVVKLQ--------DLISKLLVKNPKK 447
                       L +       R    + K  +E +  Q        DLI K+L  +P K
Sbjct: 260 KTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319

Query: 448 RIGSLKGSVEIKRHEFFKGI 467
           RI +L+   E  +H FF  +
Sbjct: 320 RI-TLR---EALKHPFFDLL 335

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 63/193 (32%)

Query: 86  FRLLRRLGSGDIGNVYLC---QIRNPMVGLPQCFYAMKVVD-----REA----LAIRKKL 133
           + ++  LG G  G V  C   +     V       A+K+V       EA    + + + L
Sbjct: 16  YEIVDTLGEGAFGKVVECIDHKAGGRHV-------AVKIVKNVDRYCEAARSEIQVLEHL 68

Query: 134 HRAD--MEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGIS 191
           +  D       + ML+          FE   + C+V E                   G+S
Sbjct: 69  NTTDPNSTFRCVQMLEW---------FEHHGHICIVFE-----------------LLGLS 102

Query: 192 SAKFVFFLLFFF--FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN 249
                    + F      L F    +      R  A +   ++ +LH   + + DLKPEN
Sbjct: 103 --------TYDFIKENGFLPFRLDHI------RKMAYQICKSVNFLHSNKLTHTDLKPEN 148

Query: 250 VLVREDGHIMLSD 262
           +L  +  +    +
Sbjct: 149 ILFVQSDYTEAYN 161

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 31/131 (23%)

Query: 360 THE-----YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK--- 411
           T       Y APEV+    + + VD W++G    EM      F G +    L  I     
Sbjct: 177 TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIG 236

Query: 412 --KPLTFPRIGVSS----------SKEFEEVVKLQ-----DLISKLLVKNPKKRIGSLKG 454
                 +P     S           +  + VV         L+ ++L  NP KRI S   
Sbjct: 237 LPPEDDWP--RDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRI-SAF- 292

Query: 455 SVEIKRHEFFK 465
                +H +  
Sbjct: 293 --RALQHSYLH 301

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 42/200 (21%), Positives = 65/200 (32%), Gaps = 58/200 (29%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVV----DREAL------AIR 130
              +  +  +G G  G VY  +       V       A+K V                +R
Sbjct: 8   TSRYEPVAEIGVGAYGTVYKARDPHSGHFV-------ALKSVRVPNGGGGGGGLPISTVR 60

Query: 131 -----KKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPG 185
                ++L   +   V+  ++D     T   + E      LV E+    DL     + P 
Sbjct: 61  EVALLRRLEAFEHPNVV-RLMD--VCATSRTDREIKVT--LVFEHVDQ-DLRTYLDKAPP 114

Query: 186 KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL 245
                 + K                                + L  L++LH   IV+RDL
Sbjct: 115 PGLPAETIKD----------------------------LMRQFLRGLDFLHANCIVHRDL 146

Query: 246 KPENVLVREDGHIMLSDFDL 265
           KPEN+LV   G + L+DF L
Sbjct: 147 KPENILVTSGGTVKLADFGL 166

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 31/131 (23%)

Query: 360 THE-----YLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK--- 411
           T       Y APEV+    + + VD W++G    EM      F+G ++   L  IL    
Sbjct: 177 TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG 236

Query: 412 --KPLTFPRIGVSS----------SKEFEEVVKLQ-----DLISKLLVKNPKKRIGSLKG 454
                 +P     +          ++  E+ V        DL+ K L  NP KRI S   
Sbjct: 237 LPGEEDWP--RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRI-SAY- 292

Query: 455 SVEIKRHEFFK 465
                 H +F+
Sbjct: 293 --SALSHPYFQ 301

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
              + L  L++LH   +V+RDLKP+N+LV   G I L+DF L
Sbjct: 125 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 166

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 38/145 (26%)

Query: 352 ARSKS-----FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NE 403
           AR  +     +V T  Y APE++ +   +   VD W++G  + E+L G T F G +  ++
Sbjct: 179 ARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238

Query: 404 KTLI-NILKKPL--TFPRIGVSSSKEFEEVVKLQ-------------------DLISKLL 441
             LI  ++  P      +I   S++ +  +  L                    DL+ K+L
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNY--IQSLTQMPKMNFANVFIGANPLAVDLLEKML 296

Query: 442 VKNPKKRIGSLKGSV-EIKRHEFFK 465
           V +  KRI     +  +   H +F 
Sbjct: 297 VLDSDKRI-----TAAQALAHAYFA 316

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +F   + L  L+Y+H   I++RDLKP N+ V ED  + + DF L+
Sbjct: 134 VQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 179

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 38/185 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKV 141
           +   L R LG G  G VY     N          A+K   ++        ++     E V
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHKGEKINV--AVKTCKKDCT----LDNKEKFMSEAV 65

Query: 142 ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           I+  LDHP +  L    E      ++ME  P G+L    +R       +     V +   
Sbjct: 66  IMKNLDHPHIVKLIGIIEEEPT-WIIMELYPYGELGHYLERNKNS---LKVLTLVLY--- 118

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                  + +   A+ YL  +  V+RD+   N+LV     + L 
Sbjct: 119 -----------------------SLQICKAMAYLESINCVHRDIAVRNILVASPECVKLG 155

Query: 262 DFDLS 266
           DF LS
Sbjct: 156 DFGLS 160

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 71/252 (28%)

Query: 35  GSRRSSISLCSSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLD-HFRLLRRLG 93
               ++    +S      S        +    + +    + R      +   + +   +G
Sbjct: 3   SHEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIG 62

Query: 94  SGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV----------IL 143
           +G  G+V                 A   +++  +AI KK+ R   + +          IL
Sbjct: 63  TGSYGHVCE---------------AYDKLEKRVVAI-KKILRVFEDLIDCKRILREIAIL 106

Query: 144 TMLDHP--------FLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAK 194
             L+H          +P    +F+   Y  +V+E     D     R         ++   
Sbjct: 107 NRLNHDHVVKVLDIVIPKDVEKFD-ELY--VVLEIA-DSDFKKLFRTPVY-----LTELH 157

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
               L     YN                      L+ ++Y+H  GI++RDLKP N LV +
Sbjct: 158 IKTLL-----YN---------------------LLVGVKYVHSAGILHRDLKPANCLVNQ 191

Query: 255 DGHIMLSDFDLS 266
           D  + + DF L+
Sbjct: 192 DCSVKVCDFGLA 203

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 34/144 (23%)

Query: 352 ARSKS-----FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NE 403
           AR        +V T  Y APEVI +   +   VD W++G  + EM+ G T FKG +  ++
Sbjct: 175 ARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ 234

Query: 404 KTLI-NILKKPL--TFPRIGVSSSKE------------FEEVVK-----LQDLISKLLVK 443
              I  +   P      R+    +K             F  ++        +L+ K+LV 
Sbjct: 235 LKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVL 294

Query: 444 NPKKRIGSLKGSV-EIKRHEFFKG 466
           + ++R+     +  E   H +F+ 
Sbjct: 295 DAEQRV-----TAGEALAHPYFES 313

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +F   + L  L Y+H  GI++RDLKP N+ V ED  + + DF L+
Sbjct: 130 IQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA 175

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 34/144 (23%)

Query: 352 ARSKS-----FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NE 403
           AR        +V T  Y APEVI S   +   VD W++G  + EML G T FKG++  ++
Sbjct: 173 ARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ 232

Query: 404 KTLI-NILKKPL--TFPRIGVSSSKE------------FEEVV-----KLQDLISKLLVK 443
            T I  +   P      ++   ++K             F ++      +  DL+ K+L  
Sbjct: 233 LTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLEL 292

Query: 444 NPKKRIGSLKGSV-EIKRHEFFKG 466
           +  KR+     +  +   H FF+ 
Sbjct: 293 DVDKRL-----TAAQALTHPFFEP 311

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            ++   + L  L+Y+H  G+V+RDLKP N+ V ED  + + DF L+
Sbjct: 128 IQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 173

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 30/134 (22%)

Query: 358 VGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NEKTLI-NILKKP 413
           V T  Y APEV+ +   +  A+D W+ G  L E+      F G +  ++  LI  I+  P
Sbjct: 183 VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTP 242

Query: 414 LTFPRIGVSSSKEFEEVVKLQ--------------------DLISKLLVKNPKKRIGSLK 453
            +   +    S    E +K                      DL+ ++LV +P KRI    
Sbjct: 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRI---- 298

Query: 454 GSV-EIKRHEFFKG 466
            +  E   H + + 
Sbjct: 299 -TAKEALEHPYLQT 311

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 44/201 (21%), Positives = 65/201 (32%), Gaps = 68/201 (33%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH-------- 134
              F+L   LG G  G V  C              A      E +AI KK+         
Sbjct: 10  SSDFQLKSLLGEGAYGVV--CS-------------ATHKPTGEIVAI-KKIEPFDKPLFA 53

Query: 135 -RADMEKVILTMLDHP--------FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPG 185
            R   E  IL    H           P  +  F    Y  ++ E     DL+     Q  
Sbjct: 54  LRTLREIKILKHFKHENIITIFNIQRPDSFENFN-EVY--IIQELM-QTDLHRVISTQM- 108

Query: 186 KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL 245
               +S     +F+     Y                      TL A++ LH   +++RDL
Sbjct: 109 ----LSDDHIQYFI-----YQ---------------------TLRAVKVLHGSNVIHRDL 138

Query: 246 KPENVLVREDGHIMLSDFDLS 266
           KP N+L+  +  + + DF L+
Sbjct: 139 KPSNLLINSNCDLKVCDFGLA 159

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 33/193 (17%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH-------RA 136
           D   L + LG G  G V + +        P+   A+ V      A+ K L         +
Sbjct: 35  DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPK--EAVTV------AV-KMLKDDATEKDLS 85

Query: 137 D--MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
           D   E  ++ M+  H  +  L           +++EY   G+L         + +  +  
Sbjct: 86  DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL---------REYLRARR 136

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                  +         +     +         +    +EYL     ++RDL   NVLV 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSC-----TYQLARGMEYLASQKCIHRDLAARNVLVT 191

Query: 254 EDGHIMLSDFDLS 266
           E+  + ++DF L+
Sbjct: 192 ENNVMKIADFGLA 204

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 31/133 (23%)

Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK--- 411
           +++ +  Y APE++ G      ++D W++G    E++ G   F GE +   L+ I++   
Sbjct: 200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMG 259

Query: 412 --------------KPLTFPRIGVSSSKEFEEVVK------LQDLISKLLVKNPKKRIGS 451
                           + FP +    +K++ +++         DL+ ++L   P  RI  
Sbjct: 260 TPTKEQMIRMNPHYTEVRFPTL---KAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINP 316

Query: 452 LKGSVEIKRHEFF 464
                E   H FF
Sbjct: 317 Y----EAMAHPFF 325

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL---HRADMEK 140
             + L + LG+G  G V                    +   +  A++K L      + E 
Sbjct: 7   KKYSLGKTLGTGSFGIVCE---------------VFDIESGKRFALKKVLQDPRYKNREL 51

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
            I+ +LDH  +  L   F    Y+    E  P        +         +  K V    
Sbjct: 52  DIMKVLDHVNIIKLVDYF----YTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNP 107

Query: 201 FFFFYNNLGFVHTDVTLF---------------FNYRFYAAETLLALEYLHMMGIVYRDL 245
               Y N+   +   TL                     Y  +   A+ ++H +GI +RD+
Sbjct: 108 SQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDI 167

Query: 246 KPENVLV-REDGHIMLSDF 263
           KP+N+LV  +D  + L DF
Sbjct: 168 KPQNLLVNSKDNTLKLCDF 186

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 38/193 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKL-------HRA 136
           +  +    +G G+ G V   +I+            M        AI K++          
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDG-------LRMDA------AI-KRMKEYASKDDHR 70

Query: 137 D--MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
           D   E  +L  L  HP +  L    E   Y  L +EY P G+L           F   S 
Sbjct: 71  DFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNL---------LDFLRKSR 121

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                  F    +    + +   L F     AA+    ++YL     ++RDL   N+LV 
Sbjct: 122 VLETDPAFAIANSTASTLSSQQLLHF-----AADVARGMDYLSQKQFIHRDLAARNILVG 176

Query: 254 EDGHIMLSDFDLS 266
           E+    ++DF LS
Sbjct: 177 ENYVAKIADFGLS 189

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 46/187 (24%)

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRAD--MEKVILT 144
              R +G G  G VY  +  +      QC  A+K + R      +         E +++ 
Sbjct: 24  HSDRVIGKGHFGVVYHGEYIDQAQNRIQC--AIKSLSRIT----EMQQVEAFLREGLLMR 77

Query: 145 MLDHPFLPTLYA---EFEASHYSCLVMEYCPGGDLYAARQ--RQPGKRFGISSAKFVFFL 199
            L+HP +  L       E   +  +++ Y   GDL    Q  R P +   +        L
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPH--VLLPYMCHGDL---LQFIRSPQRNPTVKD------L 126

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
           + F                        +    +EYL     V+RDL   N ++ E   + 
Sbjct: 127 ISF----------------------GLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVK 164

Query: 260 LSDFDLS 266
           ++DF L+
Sbjct: 165 VADFGLA 171

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 33/193 (17%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH-------RA 136
           D   L + LG G  G V L +        P      KV      A+ K L         +
Sbjct: 69  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPN--RVTKV------AV-KMLKSDATEKDLS 119

Query: 137 D--MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSA 193
           D   E  ++ M+  H  +  L           +++EY   G+L         + +  +  
Sbjct: 120 DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL---------REYLQARR 170

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                  +   +N    + +   +       A +    +EYL     ++RDL   NVLV 
Sbjct: 171 PPGLEYSYNPSHNPEEQLSSKDLVSC-----AYQVARGMEYLASKKCIHRDLAARNVLVT 225

Query: 254 EDGHIMLSDFDLS 266
           ED  + ++DF L+
Sbjct: 226 EDNVMKIADFGLA 238

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 56/195 (28%)

Query: 87  RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL---AIRKKLHRADMEKVIL 143
               ++G G  G+VY  + ++         YA+K ++   +   A R        E  +L
Sbjct: 24  YEGCKVGRGTYGHVYKAKRKDGKDD---KDYALKQIEGTGISMSACR--------EIALL 72

Query: 144 TMLDHPFLPTLYAEFEASHYSC--LVMEYCPGGDLY-------AARQRQPGKRFGISSAK 194
             L HP + +L   F +       L+ +Y    DL+       A++  +   +      K
Sbjct: 73  RELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVK 131

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            + + +                            L  + YLH   +++RDLKP N+LV  
Sbjct: 132 SLLYQI----------------------------LDGIHYLHANWVLHRDLKPANILVMG 163

Query: 255 D----GHIMLSDFDL 265
           +    G + ++D   
Sbjct: 164 EGPERGRVKIADMGF 178

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 66/202 (32%)

Query: 83  LDHFRLLRRLGSGDIGNVY--LCQIRNPMVGLPQCFYAMKVV----DREAL---AIRKKL 133
           +  +  L ++G G  G V+    +     V       A+K V    ++E     A+R   
Sbjct: 16  VSKYEKLAKIGQGTFGEVFKARHRKTGQKV-------ALKKVLMENEKEGFPITALR--- 65

Query: 134 HRADMEKVILTMLDHPFLPTLY----------AEFEASHYSCLVMEYCPGGDLYAARQRQ 183
                E  IL +L H  +  L              + S Y  LV ++C   DL A     
Sbjct: 66  -----EIKILQLLKHENVVNLIEICRTKASPYNRCKGSIY--LVFDFCEH-DL-AGLLSN 116

Query: 184 PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR 243
              +F +S  K V  +L                            L  L Y+H   I++R
Sbjct: 117 VLVKFTLSEIKRVMQML----------------------------LNGLYYIHRNKILHR 148

Query: 244 DLKPENVLVREDGHIMLSDFDL 265
           D+K  NVL+  DG + L+DF L
Sbjct: 149 DMKAANVLITRDGVLKLADFGL 170

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 41/149 (27%)

Query: 349 PINARSKSFVGTHE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENN 402
             N++   +  T+      Y  PE++ G+   G  +D W  G  + EM   +   +G   
Sbjct: 177 AKNSQPNRY--TNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE 234

Query: 403 EKTLINILK-------------------KPLTFPRIGVSSSKEFEEVVKLQ-------DL 436
           +  L  I +                   + L   +      ++ ++ +K         DL
Sbjct: 235 QHQLALISQLCGSITPEVWPNVDNYELYEKLELVK---GQKRKVKDRLKAYVRDPYALDL 291

Query: 437 ISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           I KLLV +P +RI     S +   H+FF 
Sbjct: 292 IDKLLVLDPAQRI----DSDDALNHDFFW 316

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 51/192 (26%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-KLHRADMEKV- 141
              R L+ LGSG  G V+          +      + V       I+  +          
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIK-----IPV------CIKVIEDKSGRQSFQA 61

Query: 142 ------ILTMLDHPFLPTLYAE-FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
                  +  LDH  +  L      +S    LV +Y P G L    ++  G    +    
Sbjct: 62  VTDHMLAIGSLDHAHIVRLLGLCPGSSLQ--LVTQYLPLGSLLDHVRQHRGA---LGPQL 116

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
            + +                +          A+    + YL   G+V+R+L   NVL++ 
Sbjct: 117 LLNWG-------------VQI----------AK---GMYYLEEHGMVHRNLAARNVLLKS 150

Query: 255 DGHIMLSDFDLS 266
              + ++DF ++
Sbjct: 151 PSQVQVADFGVA 162

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 357 FVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NEKTLI-NILKK 412
           +V    Y APE++   +G    VD W+ G  + EM      F+G    N+   I  ++  
Sbjct: 193 YVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGT 252

Query: 413 PL--TFPRIG-------VSSSKEFEEVVKLQ-----------DLISKLLVKNPKKRIGSL 452
           P                + +S                     DLI+K+L  NP++RI   
Sbjct: 253 PKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRI--- 309

Query: 453 KGSV-EIKRHEFFKG 466
             S  +  RH +F+ 
Sbjct: 310 --STEQALRHPYFES 322

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +++    LL L  LH  G+V+RDL P N+L+ ++  I + DF+L+
Sbjct: 136 IQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLA 181

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 47/195 (24%), Positives = 63/195 (32%), Gaps = 57/195 (29%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK-KLHRADMEKV 141
              +  L  LG G    VY                A      + +AI+K KL      K 
Sbjct: 9   AKRYEKLDFLGEGQFATVYK---------------ARDKNTNQIVAIKKIKLGHRSEAKD 53

Query: 142 -----------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGI 190
                      +L  L HP +  L   F       LV ++    DL     +        
Sbjct: 54  GINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DL-EVIIKDNSLVLTP 111

Query: 191 SSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENV 250
           S  K                             Y   TL  LEYLH   I++RDLKP N+
Sbjct: 112 SHIKA----------------------------YMLMTLQGLEYLHQHWILHRDLKPNNL 143

Query: 251 LVREDGHIMLSDFDL 265
           L+ E+G + L+DF L
Sbjct: 144 LLDENGVLKLADFGL 158

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 33/133 (24%)

Query: 360 THE-----YLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK-- 411
           TH+     Y APE++ G    G  VD W +G  L E+L       G+++   L  I +  
Sbjct: 170 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETL 229

Query: 412 ---KPLTFPRIGVSSSKEFEEVVKLQ----------------DLISKLLVKNPKKRIGSL 452
                  +P   + S  ++                       DLI  L + NP  RI   
Sbjct: 230 GTPTEEQWP--DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI--- 284

Query: 453 KGSVEIKRHEFFK 465
             + +  + ++F 
Sbjct: 285 -TATQALKMKYFS 296

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 70/203 (34%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRA--DM-- 138
            D++ +   +G G  G VYL               A      + +AI KK++R   D+  
Sbjct: 25  PDNYIIKHLIGRGSYGYVYL---------------AYDKNTEKNVAI-KKVNRMFEDLID 68

Query: 139 ------EKVILTMLDHP--------FLPTLYAEFEASHYSCLVMEYCPGGDLYAA-RQRQ 183
                 E  IL  L            +P    +F+   Y  +V+E     DL    +   
Sbjct: 69  CKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL-Y--IVLEIA-DSDLKKLFKTPI 124

Query: 184 PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR 243
                 ++       L     YN                      LL   ++H  GI++R
Sbjct: 125 F-----LTEEHIKTIL-----YN---------------------LLLGENFIHESGIIHR 153

Query: 244 DLKPENVLVREDGHIMLSDFDLS 266
           DLKP N L+ +D  + + DF L+
Sbjct: 154 DLKPANCLLNQDCSVKVCDFGLA 176

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 37/195 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH-------RA 136
           D   L + LG G  G V + +        P+   A+ V      A+ K L         +
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPK--EAVTV------AV-KMLKDDATEKDLS 131

Query: 137 D--MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGIS 191
           D   E  ++ M+  H  +  L           +++EY   G+L  Y   +R PG  +   
Sbjct: 132 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYD 191

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
             +     +             D+           +    +EYL     ++RDL   NVL
Sbjct: 192 INRVPEEQM----------TFKDLVSC------TYQLARGMEYLASQKCIHRDLAARNVL 235

Query: 252 VREDGHIMLSDFDLS 266
           V E+  + ++DF L+
Sbjct: 236 VTENNVMKIADFGLA 250

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 39/179 (21%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EKVILTMLD 147
           + LGSG+ G V     +   V       A+K++  EA        + ++  E  ++  LD
Sbjct: 23  KELGSGNFGTVKKGYYQMKKVVKT---VAVKILKNEAND---PALKDELLAEANVMQQLD 76

Query: 148 HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNN 207
           +P++  +    EA  +  LVME    G L    Q+   +     +      ++       
Sbjct: 77  NPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQ--NRHVKDKN------IIEL----- 122

Query: 208 LGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                              +  + ++YL     V+RDL   NVL+    +  +SDF LS
Sbjct: 123 -----------------VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLS 164

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 358 VGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--------------- 401
           + T  Y +P ++ S   +  A+D W  G    EML G T F G +               
Sbjct: 185 LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVV 244

Query: 402 NEKTLINILKKPLTFPR-IGVSSSKEFEEVVKLQ-----DLISKLLVKNPKKRI 449
           +E+    +L     + R       K   +++        D + ++L  +P  R+
Sbjct: 245 HEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRL 298

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 221 YRFYAAETLLALEYLHMMGIVYRDLKPENVLV-REDGHIMLSDFDLS 266
            R +  + L  L+Y+H   +++RDLKP N+ +  ED  + + DF L+
Sbjct: 122 ARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA 168

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 27/117 (23%)

Query: 358 VGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN--NEKTLI-NILKKP 413
           V T  Y APE++ + +G+  ++D W++G  L EML     F G++  ++   I  IL  P
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251

Query: 414 L--TFPRIGVSSSKEFEEVVKLQ-------------------DLISKLLVKNPKKRI 449
                  I    ++ +  ++ L                    DL+ K+L  NP KRI
Sbjct: 252 SQEDLNCIINLKARNY--LLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRI 306

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            L  L+Y+H   +++RDLKP N+L+     + + DF L+
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA 175

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 28/39 (71%)

Query: 228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
            +  ++YLH  G+++RD+KP N+L+  + H+ ++DF LS
Sbjct: 118 LIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 39/178 (21%)

Query: 91  RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EKVILTMLDH 148
            LG G+ G+V     R     +     A+KV+ +      +K    +M  E  I+  LD+
Sbjct: 343 ELGCGNFGSVRQGVYRMRKKQID---VAIKVLKQGT----EKADTEEMMREAQIMHQLDN 395

Query: 149 PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNL 208
           P++  L    +A     LVME   GG L+     +  +   I  +     L         
Sbjct: 396 PYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREE---IPVSNVAELL--------- 442

Query: 209 GFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                 V          +     ++YL     V+R+L   NVL+    +  +SDF LS
Sbjct: 443 ----HQV----------SM---GMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLS 483

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 84  DHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM--EK 140
           D+  +    LG G+ G+V     R     +     A+KV+ +      +K    +M  E 
Sbjct: 9   DNLLIADIELGCGNFGSVRQGVYRMRKKQID---VAIKVLKQGT----EKADTEEMMREA 61

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
            I+  LD+P++  L    +A     LVME   GG L+     +  +   I  +     L 
Sbjct: 62  QIMHQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREE---IPVSNVAELL- 116

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                         V          +     ++YL     V+RDL   NVL+    +  +
Sbjct: 117 ------------HQV----------SM---GMKYLEEKNFVHRDLAARNVLLVNRHYAKI 151

Query: 261 SDFDLS 266
           SDF LS
Sbjct: 152 SDFGLS 157

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           L YLH   I++RD+K  N+L+ E+    ++DF +S
Sbjct: 152 LHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 27/202 (13%), Positives = 54/202 (26%), Gaps = 21/202 (10%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-----DREALAIRKKLHRADM 138
           +  +   ++G G  G V+     +  V       A+K++     D    + +K       
Sbjct: 20  EKLQRCEKIGEGVFGEVFQTIADHTPV-------AIKIIAIEGPDLVNGSHQKTFEEILP 72

Query: 139 EKVILTMLDHPFLPTLYA--EFEASHYSCLVMEYCP--GGDLYAARQRQPGKRFGISSAK 194
           E +I   L             F   +    V    P      +       G         
Sbjct: 73  EIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFF 132

Query: 195 FVFFLLFFFFYNNLG----FVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPEN 249
               L     +   G     + T ++     +    +   +L      +   +RDL   N
Sbjct: 133 KDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGN 192

Query: 250 VLVREDGHIMLSDFDLSFKCDV 271
           VL+++     L          +
Sbjct: 193 VLLKKTSLKKLHYTLNGKSSTI 214

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 37/193 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVV-------DREALAIRKKLHRA 136
           ++ +  + LG+G  G V                 A+K++       ++EAL         
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM-------- 97

Query: 137 DMEKVILTMLD-HPFLPTLYAEFEASHYSCLVMEYCPGGDL--YAARQRQPGKRFGISSA 193
             E  I++ L  H  +  L           ++ EYC  GDL  +  R+ +  +     + 
Sbjct: 98  -SELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAI 156

Query: 194 KFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR 253
                        N      D+  F      +++    + +L     ++RD+   NVL+ 
Sbjct: 157 A------------NSTASTRDLLHF------SSQVAQGMAFLASKNCIHRDVAARNVLLT 198

Query: 254 EDGHIMLSDFDLS 266
                 + DF L+
Sbjct: 199 NGHVAKIGDFGLA 211

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 42/222 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D  +L + LG G  G V                 A+K++   A     +   ++++  IL
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELK--IL 79

Query: 144 TMLD-HPFLPTLY-AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
             +  H  +  L  A  +      +++E+C  G+L     R     F     K   F   
Sbjct: 80  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTY-LRSKRNEFVPYKTKGARFRQG 138

Query: 202 FFFYNNLG-------------------------------------FVHTDVTLFFNYRFY 224
             +   +                                       ++ D     +   Y
Sbjct: 139 KDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICY 198

Query: 225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           + +    +E+L     ++RDL   N+L+ E   + + DF L+
Sbjct: 199 SFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 53/303 (17%), Positives = 106/303 (34%), Gaps = 89/303 (29%)

Query: 236 HM------MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYE 289
           HM          Y+D+            +    F  +F C  V  + +  LS E I+   
Sbjct: 6   HMDFETGEHQYQYKDILS----------VFEDAFVDNFDCKDVQDMPKSILSKEEIDH-- 53

Query: 290 KCSIPSCATPMQPVLSCFSSV-SHGKKNKKKAVT----------VTTIREQVDG------ 332
              I      +   L  F ++ S  ++  +K V           ++ I+ +         
Sbjct: 54  ---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 333 ---DHHDQELLDDPEVVAEPIN-ARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLY 388
              +  D+ L +D +V A   N +R + ++   + L  E+   +            V + 
Sbjct: 111 MYIEQRDR-LYNDNQVFA-KYNVSRLQPYLKLRQALL-ELRPAK-----------NVLID 156

Query: 389 EMLYGTTPFKGENNEKT-L-INILKKP---LTFPR----IGVSSSKEFEEVVK-LQDLIS 438
            +L G+    G    KT + +++                + + +    E V++ LQ L+ 
Sbjct: 157 GVL-GS----G----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 439 KL---------LVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPPEVPNN-DLY 486
           ++            N K RI S++   E++R    K     L+   +++  +  N  +L 
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 487 CKI 489
           CKI
Sbjct: 266 CKI 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 63/469 (13%), Positives = 126/469 (26%), Gaps = 154/469 (32%)

Query: 120 KVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF----EASHYSCLVMEYCPGGD 175
           + +D   +  +  +      ++  T+L       +  +F       +Y  L+        
Sbjct: 49  EEID-HIIMSKDAVSGTL--RLFWTLLSKQ--EEMVQKFVEEVLRINYKFLM-------S 96

Query: 176 LYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE-- 233
                QRQP               ++    + L   + D  +F  Y     +  L L   
Sbjct: 97  PIKTEQRQPSMMT----------RMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 234 ----------YLH-MMGI--------VYRDLKPENVLVREDGHIMLSDFDLSF-KCDVVP 273
                      +  ++G         V    K   V  + D  I    F L+   C+   
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKI----FWLNLKNCNSPE 196

Query: 274 KLLRP--KLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVD 331
            +L    KL ++    +   S  S    ++          H  + + +      ++ +  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---------IHSIQAELR----RLLKSKP- 242

Query: 332 GDHHDQEL--LDD---PEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVF 386
              ++  L  L +    +      N   K  + T      + +S           T  + 
Sbjct: 243 ---YENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAAT--------TTHIS 290

Query: 387 LYEMLYGTTPFKGENNEKTLINILK-KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP 445
           L       TP   +  +  L+  L  +P   PR          EV+      +   +   
Sbjct: 291 LDHHSMTLTP---DEVKSLLLKYLDCRPQDLPR----------EVLT----TNPRRLS-- 331

Query: 446 KKRIGSLKGSVEIKRHEFFKGIN-WALIRSIK-------PPEVPNNDLY---------CK 488
              I        +   + +K +N   L   I+       P E     ++           
Sbjct: 332 --IIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAH 386

Query: 489 IKKKVY---------------VPKLSKQ---ERDAP---YQIPTHHFDY 516
           I   +                V KL K    E+        IP+ + + 
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
           + +LH    ++RD+K  N+L+ E     +SDF L
Sbjct: 146 INFLHENHHIHRDIKSANILLDEAFTAKISDFGL 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.96
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.94
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.86
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.78
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.42
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.33
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.19
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.97
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.75
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.55
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.53
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.52
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.43
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.38
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.33
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.15
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.97
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.87
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.77
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.76
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.72
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.62
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.46
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.44
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.32
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.26
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.25
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.21
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.99
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.69
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.72
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	94.42
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	86.46

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=4.3e-70  Score=534.24  Aligned_cols=280  Identities=33%  Similarity=0.594  Sum_probs=243.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||+||+|+++.     +++.||||++.+..........++.+|+.+|+.++|||||+++++|++
T Consensus        29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~-----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  103 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFSTVVLARELA-----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD  103 (311)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             CCccccEEEEEEecccCeEEEEEEECC-----CCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe
Confidence            345789999999999999999999987     789999999998876666667888999999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++++|||||||+||+|.+++...  ..+++..+                            +.|++||+.||+|||++||
T Consensus       104 ~~~~yivmEy~~gG~L~~~i~~~--~~l~e~~~----------------------------~~~~~qi~~al~ylH~~~I  153 (311)
T 4aw0_A          104 DEKLYFGLSYAKNGELLKYIRKI--GSFDETCT----------------------------RFYTAEIVSALEYLHGKGI  153 (311)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEecCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999764  33444333                            4788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||||+||||+.+|++||+|||+|+.+....                                               
T Consensus       154 iHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~-----------------------------------------------  186 (311)
T 4aw0_A          154 IHRDLKPENILLNEDMHIQITDFGTAKVLSPES-----------------------------------------------  186 (311)
T ss_dssp             ECSCCSGGGEEECTTSCEEECCCTTCEECCTTT-----------------------------------------------
T ss_pred             ccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC-----------------------------------------------
Confidence            999999999999999999999999996543110                                               


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                   ......+++||+.|||||++.+..|+.++|||||||++|||++|++||.+.
T Consensus       187 -----------------------------~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          187 -----------------------------KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             -----------------------------TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -----------------------------CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                         012345679999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC--ChHHhhcCCCcCCCCcccccCCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~--~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      +..+++.+|......+|...         +.++++||.+||++||++|||+.+  ...+|++||||+++||+.++...||
T Consensus       238 ~~~~~~~~i~~~~~~~p~~~---------s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~l~~~~pP  308 (311)
T 4aw0_A          238 NEGLIFAKIIKLEYDFPEKF---------FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPP  308 (311)
T ss_dssp             SHHHHHHHHHHTCCCCCTTC---------CHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCC
T ss_pred             CHHHHHHHHHcCCCCCCccc---------CHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHHhcCCCCC
Confidence            99999999999888776432         225899999999999999999973  2345799999999999999998888


Q ss_pred             CC
Q 010140          479 EV  480 (517)
Q Consensus       479 ~~  480 (517)
                      .+
T Consensus       309 ~l  310 (311)
T 4aw0_A          309 KL  310 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=5.1e-68  Score=519.46  Aligned_cols=281  Identities=40%  Similarity=0.736  Sum_probs=231.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||+||+|++....  .+++.||||++++.... .....++.+|+.+|++++|||||+++++|++
T Consensus        21 ~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~--~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~   97 (304)
T 3ubd_A           21 ADPSQFELLKVLGQGSFGKVFLVKKISGS--DARQLYAMKVLKKATLK-VRDRVRTKMERDILVEVNHPFIVKLHYAFQT   97 (304)
T ss_dssp             CCGGGEEEEEEEECGGGCEEEEEEECSST--TTTCEEEEEEEESEEEE-EEECC------CCCCCCCCTTEECEEEEEEE
T ss_pred             CCccccEEEEEEecCCCeEEEEEEEccCC--CCCEEEEEEEEehHHcC-hHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE
Confidence            44578999999999999999999875422  25789999999754221 1223456779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|||||||+||+|.+++.+.  ..+++..+                            +.|++||+.||+|||++||
T Consensus        98 ~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~----------------------------~~~~~qi~~aL~ylH~~~I  147 (304)
T 3ubd_A           98 EGKLYLILDFLRGGDLFTRLSKE--VMFTEEDV----------------------------KFYLAELALALDHLHSLGI  147 (304)
T ss_dssp             TTEEEEEECCCTTCEEHHHHHHH--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999764  23443333                            4788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||||+|||++.+|++||+|||+|+....                                                 
T Consensus       148 iHRDlKp~NILl~~~g~vKl~DFGla~~~~~-------------------------------------------------  178 (304)
T 3ubd_A          148 IYRDLKPENILLDEEGHIKLTDFGLSKESID-------------------------------------------------  178 (304)
T ss_dssp             CCSSCCGGGEEECTTSCEEEESSEEEEC----------------------------------------------------
T ss_pred             cCCCCCHHHeEEcCCCCEEecccccceeccC-------------------------------------------------
Confidence            9999999999999999999999999853221                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                   ......+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.
T Consensus       179 -----------------------------~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          179 -----------------------------HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             -------------------------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -----------------------------CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence                                         011234568999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      +..+.+.++......+|...         +.++++||.+||++||++|||+. ..++|+++||||+++||+.+  +.+.|
T Consensus       230 ~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l~~~~~~p  300 (304)
T 3ubd_A          230 DRKETMTMILKAKLGMPQFL---------SPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHP  300 (304)
T ss_dssp             SHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CHHHHHHHHHcCCCCCCCcC---------CHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCHHHHHhCCCCc
Confidence            99999999998877766432         23589999999999999999985 34679999999999999987  56788


Q ss_pred             CCCC
Q 010140          478 PEVP  481 (517)
Q Consensus       478 ~~~~  481 (517)
                      |++|
T Consensus       301 P~~P  304 (304)
T 3ubd_A          301 PFKP  304 (304)
T ss_dssp             SSCC
T ss_pred             CcCC
Confidence            8776

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=6.7e-65  Score=505.61  Aligned_cols=261  Identities=24%  Similarity=0.442  Sum_probs=216.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      .+++|+++++||+|+||+||+|+++.     +++.||||++.+.... ....+++.+|+.+|++|+|||||+++++|+++
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~-----~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~   95 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTE-----DGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEEN   95 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETT-----TCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cccceEEeEEEecCCCeEEEEEEECC-----CCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC
Confidence            35899999999999999999999987     7889999999765332 23456788899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|||||||+||+|.+++.......+++..+                            +.|+.||+.||+|||++|||
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~----------------------------~~~~~qi~~aL~ylH~~~Ii  147 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQI----------------------------LDWFVQICLALKHVHDRKIL  147 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999998764444443333                            36789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||||+.+|.+||+|||+|+.+...                                                 
T Consensus       148 HRDlKp~NILl~~~g~vKl~DFGla~~~~~~-------------------------------------------------  178 (350)
T 4b9d_A          148 HRDIKSQNIFLTKDGTVQLGDFGIARVLNST-------------------------------------------------  178 (350)
T ss_dssp             ETTCCGGGEEECTTCCEEECSTTEESCCCHH-------------------------------------------------
T ss_pred             eccCCHHHEEECCCCCEEEcccccceeecCC-------------------------------------------------
Confidence            9999999999999999999999999543210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .....+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+
T Consensus       179 -----------------------------~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~  229 (350)
T 4b9d_A          179 -----------------------------VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS  229 (350)
T ss_dssp             -----------------------------HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             -----------------------------cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence                                         011234579999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ..+++.++..+......  ...      +.++++||.+||++||++|||+.    |+|+||||+.
T Consensus       230 ~~~~~~~i~~~~~~~~~--~~~------s~~~~~li~~~L~~dP~~R~s~~----e~l~hp~~~~  282 (350)
T 4b9d_A          230 MKNLVLKIISGSFPPVS--LHY------SYDLRSLVSQLFKRNPRDRPSVN----SILEKGFIAK  282 (350)
T ss_dssp             HHHHHHHHHHTCCCCCC--TTS------CHHHHHHHHHHTCSSGGGSCCHH----HHHTSHHHHT
T ss_pred             HHHHHHHHHcCCCCCCC--ccC------CHHHHHHHHHHccCChhHCcCHH----HHhcCHHhhc
Confidence            99999999887643221  111      23589999999999999999997    9999999975

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=5.4e-64  Score=498.33  Aligned_cols=257  Identities=27%  Similarity=0.413  Sum_probs=218.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+.|+++++||+|+||+||+|+++.     +++.||||++.....   ...+.+.+|+.+|+.++|||||+++++|.+++
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~-----tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~  144 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRS-----SGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGD  144 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEGGGC---SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECC-----CCCEEEEEEEecCch---hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            4679999999999999999999987     789999999976532   33456778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++...   .+++..+                            +.|+.||+.||+|||++||||
T Consensus       145 ~~~ivmEy~~gg~L~~~l~~~---~l~e~~~----------------------------~~~~~qi~~aL~ylH~~~IiH  193 (346)
T 4fih_A          145 ELWVVMEFLEGGALTDIVTHT---RMNEEQI----------------------------AAVCLAVLQALSVLHAQGVIH  193 (346)
T ss_dssp             EEEEEECCCTTEEHHHHHHHS---CCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHcC---CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCccc
Confidence            999999999999999988763   3444333                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||||+.+|++||+|||+|+.+...                                                  
T Consensus       194 RDlKp~NILl~~~g~vKl~DFGla~~~~~~--------------------------------------------------  223 (346)
T 4fih_A          194 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE--------------------------------------------------  223 (346)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTCEECCSS--------------------------------------------------
T ss_pred             ccCCHHHEEECCCCCEEEecCcCceecCCC--------------------------------------------------
Confidence            999999999999999999999998543210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .....+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+.
T Consensus       224 ----------------------------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  275 (346)
T 4fih_A          224 ----------------------------VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  275 (346)
T ss_dssp             ----------------------------SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence                                        1123457899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+.+..+............      ..+.++++||.+||+.||++|||+.    |+|+||||+.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~------~~s~~~~dli~~~L~~dP~~R~ta~----e~l~Hp~~~~  329 (346)
T 4fih_A          276 LKAMKMIRDNLPPRLKNLH------KVSPSLKGFLDRLLVRDPAQRATAA----ELLKHPFLAK  329 (346)
T ss_dssp             HHHHHHHHHSSCCCCSCGG------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTCGGGGG
T ss_pred             HHHHHHHHcCCCCCCCccc------cCCHHHHHHHHHHcCCChhHCcCHH----HHhcCHhhcC
Confidence            8888888765432221111      2234689999999999999999997    9999999975

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.4e-64  Score=485.81  Aligned_cols=256  Identities=32%  Similarity=0.504  Sum_probs=207.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++++.||+|+||+||+|+++.     +++.||||++.+..........++.+|+.+|+.++|||||+++++|++++
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~   86 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTT-----TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD   86 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTT-----TCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC
Confidence            4789999999999999999999886     78899999998766555556677889999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+||||||| +|+|.+++...  ..+++.++                            +.|++||+.||+|||++||||
T Consensus        87 ~~~ivmEy~-~g~L~~~l~~~--~~l~e~~~----------------------------~~~~~qi~~al~ylH~~~IiH  135 (275)
T 3hyh_A           87 EIIMVIEYA-GNELFDYIVQR--DKMSEQEA----------------------------RRFFQQIISAVEYCHRHKIVH  135 (275)
T ss_dssp             EEEEEEECC-CEEHHHHHHHS--CSCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEEeCC-CCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCccc
Confidence            999999999 78999998765  33444433                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.+|++||+|||+|+....                                                   
T Consensus       136 RDiKP~NILl~~~~~vkl~DFGla~~~~~---------------------------------------------------  164 (275)
T 3hyh_A          136 RDLKPENLLLDEHLNVKIADFGLSNIMTD---------------------------------------------------  164 (275)
T ss_dssp             CCCCTTTEEECTTCCEEECCSSCC--------------------------------------------------------
T ss_pred             ccCChHHeEECCCCCEEEeecCCCeecCC---------------------------------------------------
Confidence            99999999999999999999999853221                                                   


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .....+.+||+.|||||++.+..| +.++|||||||++|+|++|++||.+.+
T Consensus       165 ----------------------------~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~  216 (275)
T 3hyh_A          165 ----------------------------GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES  216 (275)
T ss_dssp             --------------------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ----------------------------CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC
Confidence                                        011234689999999999999886 689999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ..+.+..+......+|...         +.++++||.+||+.||++|||+.    |+++||||+.
T Consensus       217 ~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dP~~R~s~~----eil~hpw~k~  268 (275)
T 3hyh_A          217 IPVLFKNISNGVYTLPKFL---------SPGAAGLIKRMLIVNPLNRISIH----EIMQDDWFKV  268 (275)
T ss_dssp             HHHHHHHHHHTCCCCCTTS---------CHHHHHHHHHHSCSSGGGSCCHH----HHHHCHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHccCChhHCcCHH----HHHcCccccc
Confidence            9999999988877766432         22589999999999999999987    9999999973

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3.2e-63  Score=504.67  Aligned_cols=257  Identities=27%  Similarity=0.412  Sum_probs=218.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+.|+++++||+|+||.||+|+++.     +++.||||++.....   ...+.+.+|+.+|+.++|||||+++++|.+++
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~-----tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~  221 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRS-----SGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGD  221 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEESTTC---SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECC-----CCCEEEEEEEeccch---hHHHHHHHHHHHHHhCCCCCCCceEEEEEECC
Confidence            4679999999999999999999987     789999999975432   33456778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++...   .+.+..+                            +.|++||+.||+|||++||||
T Consensus       222 ~~~iVmEy~~gG~L~~~i~~~---~l~e~~~----------------------------~~~~~qil~aL~ylH~~~IiH  270 (423)
T 4fie_A          222 ELWVVMEFLEGGALTDIVTHT---RMNEEQI----------------------------AAVCLAVLQALSVLHAQGVIH  270 (423)
T ss_dssp             EEEEEEECCTTEEHHHHHHHS---CCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEeCCCCCcHHHHHhcc---CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeec
Confidence            999999999999999988753   3443333                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||||+.+|.+||+|||+|+.+...                                                  
T Consensus       271 RDiKp~NILl~~~g~vKl~DFGla~~~~~~--------------------------------------------------  300 (423)
T 4fie_A          271 RDIKSDSILLTHDGRVKLSDFGFCAQVSKE--------------------------------------------------  300 (423)
T ss_dssp             CCCSTTTEEECTTCCEEECCCTTCEECCSS--------------------------------------------------
T ss_pred             ccCCHHHEEEcCCCCEEEecCccceECCCC--------------------------------------------------
Confidence            999999999999999999999998543210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .....+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+.
T Consensus       301 ----------------------------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  352 (423)
T 4fie_A          301 ----------------------------VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  352 (423)
T ss_dssp             ----------------------------CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence                                        1123456899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+.+..|.............      .+.++++||.+||+.||++|||+.    |+|+||||+.
T Consensus       353 ~~~~~~i~~~~~~~~~~~~~------~s~~~~dli~~~L~~dP~~R~ta~----ell~Hp~~~~  406 (423)
T 4fie_A          353 LKAMKMIRDNLPPRLKNLHK------VSPSLKGFLDRLLVRDPAQRATAA----ELLKHPFLAK  406 (423)
T ss_dssp             HHHHHHHHHSCCCCCSCTTS------SCHHHHHHHHHHSCSSTTTSCCHH----HHTTCGGGGG
T ss_pred             HHHHHHHHcCCCCCCccccc------CCHHHHHHHHHHcCCChhHCcCHH----HHhcCHHhcC
Confidence            88888887754322222111      223589999999999999999997    9999999985

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=5.4e-62  Score=517.10  Aligned_cols=282  Identities=30%  Similarity=0.598  Sum_probs=234.9

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHH---HHHHHhcCCCCccce
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME---KVILTMLDHPFLPTL  154 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E---~~il~~l~HpnIv~l  154 (517)
                      +..+.+++|++++.||+|+||+||+|+++.     +++.||||++.+...........+..|   +.+++.++|||||++
T Consensus       183 ~~~~slddf~i~k~LG~G~fG~V~la~~~~-----tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l  257 (689)
T 3v5w_A          183 NIHLTMNDFSVHRIIGRGGFGEVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCM  257 (689)
T ss_dssp             TCCCCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCE
T ss_pred             CCCCchHHeEEEEEEecccCeEEEEEEECC-----CCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEE
Confidence            456788999999999999999999999987     789999999988766544444444444   556667799999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      +++|++.+++|||||||+||+|..++...  ..+++..+                            +.|++||+.||+|
T Consensus       258 ~~~f~~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a----------------------------~~y~~qIl~aL~y  307 (689)
T 3v5w_A          258 SYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADM----------------------------RFYAAEIILGLEH  307 (689)
T ss_dssp             EEEEECSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHH----------------------------HHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHH
Confidence            99999999999999999999999999764  33444333                            4789999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++|||||||||+||||+.+|++||+|||+|+.+..                                           
T Consensus       308 LH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~-------------------------------------------  344 (689)
T 3v5w_A          308 MHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK-------------------------------------------  344 (689)
T ss_dssp             HHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS-------------------------------------------
T ss_pred             HHHCCccccCCchHHeEEeCCCCEEecccceeeecCC-------------------------------------------
Confidence            9999999999999999999999999999999854321                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG  393 (517)
                                                           ....+.+||+.|||||++.+ ..|+.++|||||||+||||++|
T Consensus       345 -------------------------------------~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG  387 (689)
T 3v5w_A          345 -------------------------------------KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG  387 (689)
T ss_dssp             -------------------------------------CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                 12345689999999999974 5799999999999999999999


Q ss_pred             CCCCCCCC---hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCc
Q 010140          394 TTPFKGEN---NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINW  469 (517)
Q Consensus       394 ~~Pf~~~~---~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~  469 (517)
                      .+||.+.+   ..++...+......+|...         +.++++||.+||+.||.+|++.. ..++||++||||+++||
T Consensus       388 ~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~---------S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW  458 (689)
T 3v5w_A          388 HSPFRQHKTKDKHEIDRMTLTMAVELPDSF---------SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDW  458 (689)
T ss_dssp             SCTTCGGGCCCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCH
T ss_pred             CCCCCCCChHHHHHHHHhhcCCCCCCCccC---------CHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCH
Confidence            99998643   3456667777776666432         22589999999999999999963 45779999999999999


Q ss_pred             ccc--cCCCCCCCCCC
Q 010140          470 ALI--RSIKPPEVPNN  483 (517)
Q Consensus       470 ~~~--~~~~p~~~~~~  483 (517)
                      +.+  +.+.||++|..
T Consensus       459 ~~l~~~~~~pP~~P~~  474 (689)
T 3v5w_A          459 QMVFLQKYPPPLIPPR  474 (689)
T ss_dssp             HHHHTTCSCCSCCCCT
T ss_pred             HHHHcCCCCcCccCCC
Confidence            987  56789998853

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=8.7e-62  Score=473.05  Aligned_cols=257  Identities=22%  Similarity=0.361  Sum_probs=205.2

Q ss_pred             CCCc-eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-
Q 010140           83 LDHF-RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-  160 (517)
Q Consensus        83 ~~~y-~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-  160 (517)
                      .++| ++.++||+|+||+||+|+++.     +++.||+|++...... ....+++.+|+.+|++|+|||||+++++|++ 
T Consensus        24 ~gr~~~~~~~iG~G~fg~Vy~a~~~~-----~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~   97 (290)
T 3fpq_A           24 DGRFLKFDIEIGRGSFKTVYKGLDTE-----TTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWEST   97 (290)
T ss_dssp             TSSEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE
T ss_pred             CCceEEeeeEEecCcCcEEEEEEECC-----CCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec
Confidence            3455 788899999999999999987     6789999999765332 2345678889999999999999999999865 


Q ss_pred             ---CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          161 ---SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       161 ---~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                         +..+|||||||+||+|.+++.+.  ..+++..+                            +.|++||+.||+|||+
T Consensus        98 ~~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~----------------------------~~~~~qi~~aL~ylH~  147 (290)
T 3fpq_A           98 VKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVL----------------------------RSWCRQILKGLQFLHT  147 (290)
T ss_dssp             ETTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence               45689999999999999999764  23333332                            4788999999999999


Q ss_pred             cC--ceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          238 MG--IVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       238 ~~--iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      +|  ||||||||+||||+. +|.+||+|||+|+...                                            
T Consensus       148 ~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~--------------------------------------------  183 (290)
T 3fpq_A          148 RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR--------------------------------------------  183 (290)
T ss_dssp             SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC--------------------------------------------
T ss_pred             CCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC--------------------------------------------
Confidence            99  999999999999984 7999999999984211                                            


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          .....+.+||+.|||||++.+ .|+.++|||||||++|||++|+
T Consensus       184 ------------------------------------~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~  226 (290)
T 3fpq_A          184 ------------------------------------ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSE  226 (290)
T ss_dssp             ------------------------------------TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCC
Confidence                                                011235689999999999976 5999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +||.+......+.+.+......+......      ++++++||.+||+.||++|||+.    |+|+||||+.
T Consensus       227 ~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~li~~~L~~dP~~R~s~~----e~l~Hp~~~~  288 (290)
T 3fpq_A          227 YPYSECQNAAQIYRRVTSGVKPASFDKVA------IPEVKEIIEGCIRQNKDERYSIK----DLLNHAFFQE  288 (290)
T ss_dssp             CTTTTCSSHHHHHHHHTTTCCCGGGGGCC------CHHHHHHHHHHSCSSGGGSCCHH----HHHTSGGGC-
T ss_pred             CCCCCCCcHHHHHHHHHcCCCCCCCCccC------CHHHHHHHHHHccCChhHCcCHH----HHhcCccccC
Confidence            99987665554444443322222111111      23589999999999999999997    9999999985

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1e-61  Score=480.59  Aligned_cols=261  Identities=24%  Similarity=0.309  Sum_probs=213.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...+.|++.++||+|+||+||+|+++.     +++.||||+++.+..        ..+|+.+|+.++|||||+++++|++
T Consensus        55 ~~~~~~~~~~~lG~G~fG~Vy~a~~~~-----~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~  121 (336)
T 4g3f_A           55 EEVHWMTHQPRVGRGSFGEVHRMKDKQ-----TGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVRE  121 (336)
T ss_dssp             BTTTEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEE
T ss_pred             cchhheEeCcEeccCCCeEEEEEEECC-----CCCEEEEEEECHHHh--------HHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            345789999999999999999999987     788999999976421        1349999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|||||||+||+|.+++...  ..+++..+                            +.|+.||+.||+|||++||
T Consensus       122 ~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~----------------------------~~~~~qi~~aL~ylH~~~I  171 (336)
T 4g3f_A          122 GPWVNIFMELLEGGSLGQLIKQM--GCLPEDRA----------------------------LYYLGQALEGLEYLHTRRI  171 (336)
T ss_dssp             TTEEEEEECCCTTCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHTTTE
T ss_pred             CCEEEEEEeccCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCc
Confidence            99999999999999999999764  23444333                            3788999999999999999


Q ss_pred             eeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       241 iHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||||+||||+.+| ++||+|||+|+.+......                                            
T Consensus       172 iHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~--------------------------------------------  207 (336)
T 4g3f_A          172 LHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG--------------------------------------------  207 (336)
T ss_dssp             ECSCCCGGGEEECTTSCCEEECCCTTCEEC--------------------------------------------------
T ss_pred             eecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc--------------------------------------------
Confidence            9999999999999988 6999999999654311000                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                   ........++||+.|||||++.+..|+.++|||||||++|||++|++||.+
T Consensus       208 -----------------------------~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~  258 (336)
T 4g3f_A          208 -----------------------------KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQ  258 (336)
T ss_dssp             -----------------------------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             -----------------------------cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCC
Confidence                                         000112346899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHh-------------hcCCCcCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI-------------KRHEFFKG  466 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~el-------------l~hp~f~~  466 (517)
                      .+..+++.++......++......      +.++.+||.+||++||++|||+.    |+             ++|||+..
T Consensus       259 ~~~~~~~~~i~~~~~~~~~~~~~~------s~~~~~li~~~L~~dP~~R~sa~----el~~~l~~~l~~~~~l~hPw~~~  328 (336)
T 4g3f_A          259 YFRGPLCLKIASEPPPIREIPPSC------APLTAQAIQEGLRKEPVHRASAM----ELRRKVGKALQEVGGLKSPWKGE  328 (336)
T ss_dssp             TCCSCCHHHHHHSCCGGGGSCTTS------CHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHHHHHHTTSSCSCSSSS
T ss_pred             CCHHHHHHHHHcCCCCchhcCccC------CHHHHHHHHHHccCCHhHCcCHH----HHHHHHHHHHhhhhhccCCCcCC
Confidence            888888888887765433222222      23589999999999999999987    65             57899875


Q ss_pred             C
Q 010140          467 I  467 (517)
Q Consensus       467 ~  467 (517)
                      .
T Consensus       329 ~  329 (336)
T 4g3f_A          329 Y  329 (336)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.4e-60  Score=466.68  Aligned_cols=272  Identities=24%  Similarity=0.393  Sum_probs=196.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++.....  ....+++.+|+.+|++|+|||||+++++|.+.+ 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~-----~~~~vAiK~i~~~~~--~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~   77 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKV-----DDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNT   77 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETT-----TCCEEEEEEEEECSS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-
T ss_pred             hhCEEeeEEecCCCeEEEEEEECC-----CCCEEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCc
Confidence            579999999999999999999986     678999999864321  233456778999999999999999999986543 


Q ss_pred             -----------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          163 -----------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       163 -----------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                                 ++|||||||+||+|.+++....  .+......                         .++.|+.||+.|
T Consensus        78 ~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~--~~~~~~~~-------------------------~~~~i~~qi~~a  130 (299)
T 4g31_A           78 TEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRC--TIEERERS-------------------------VCLHIFLQIAEA  130 (299)
T ss_dssp             ---------CEEEEEEEECCCSCCHHHHHHTCC--SGGGSCHH-------------------------HHHHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEEecCCCCcHHHHHHhcC--CCChhHHH-------------------------HHHHHHHHHHHH
Confidence                       4799999999999999997642  12211111                         124688999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      |+|||++|||||||||+||||+.+|.+||+|||+|+.+........                                  
T Consensus       131 l~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~----------------------------------  176 (299)
T 4g31_A          131 VEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQT----------------------------------  176 (299)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC---------------------------------------------
T ss_pred             HHHHHHCcCccccCcHHHeEECCCCcEEEccCccceecCCCccccc----------------------------------
Confidence            9999999999999999999999999999999999965542111000                                  


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHh
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ell  391 (517)
                                                      ............+.+||+.|||||++.+..|+.++|||||||++|||+
T Consensus       177 --------------------------------~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell  224 (299)
T 4g31_A          177 --------------------------------VLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL  224 (299)
T ss_dssp             -----------------------------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             --------------------------------cccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHc
Confidence                                            000001112345678999999999999999999999999999999999


Q ss_pred             hCCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          392 YGTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       392 tG~~Pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +   ||.+..+. ..+..+....  +|.      ......+.+.+||.+||+.||++|||+.    |+++||||++++|.
T Consensus       225 ~---Pf~~~~~~~~~~~~~~~~~--~p~------~~~~~~~~~~~li~~~L~~dP~~Rps~~----eil~h~~~~~~~~p  289 (299)
T 4g31_A          225 Y---PFSTQMERVRTLTDVRNLK--FPP------LFTQKYPCEYVMVQDMLSPSPMERPEAI----NIIENAVFEDLDFP  289 (299)
T ss_dssp             S---CCSSHHHHHHHHHHHHTTC--CCH------HHHHHCHHHHHHHHHHTCSSGGGSCCHH----HHHTSGGGCCC---
T ss_pred             c---CCCCccHHHHHHHHHhcCC--CCC------CCcccCHHHHHHHHHHcCCChhHCcCHH----HHhcCHhhCCCCCC
Confidence            6   88654332 2333333332  221      1112334578999999999999999998    99999999999984

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-59  Score=475.33  Aligned_cols=271  Identities=22%  Similarity=0.309  Sum_probs=214.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec---
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA---  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~---  160 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++++.... .....++.+|+.+|+.|+|||||++++++..   
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~-----t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~  127 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRL-----TGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVP  127 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSC
T ss_pred             CCeEEEEEEecccCeEEEEEEECC-----CCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccc
Confidence            679999999999999999999987     7899999999754322 2334567789999999999999999998753   


Q ss_pred             ---CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          161 ---SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       161 ---~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                         .+.+||||||| +|+|.+++...  ..+++..+                            +.|++||+.||+|||+
T Consensus       128 ~~~~~~~~ivmE~~-~g~L~~~i~~~--~~l~~~~~----------------------------~~~~~qil~al~ylH~  176 (398)
T 4b99_A          128 YGEFKSVYVVLDLM-ESDLHQIIHSS--QPLTLEHV----------------------------RYFLYQLLRGLKYMHS  176 (398)
T ss_dssp             TTTCCCEEEEEECC-SEEHHHHHTSS--SCCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEeCC-CCCHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence               46789999999 47899988654  33444333                            4788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+|||++.+|.+||+|||+|+.+.....                                           
T Consensus       177 ~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~-------------------------------------------  213 (398)
T 4b99_A          177 AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA-------------------------------------------  213 (398)
T ss_dssp             TTCBCCCCCGGGEEECTTCCEEECCCTTCBCC------------------------------------------------
T ss_pred             CcCcCCCcCccccccCCCCCEEEeecceeeecccCcc-------------------------------------------
Confidence            9999999999999999999999999999954321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                     .......+++||+.|||||++.+.. |+.++||||+|||+|||++|++|
T Consensus       214 -------------------------------~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~p  262 (398)
T 4b99_A          214 -------------------------------EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQL  262 (398)
T ss_dssp             ---------------------------------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCS
T ss_pred             -------------------------------ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCC
Confidence                                           0012235678999999999998864 69999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCC-----------------chhH-----HhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSS-----------------SKEF-----EEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~-----------------~~~~-----~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      |.+.+..+.+..|......++......                 ...+     ....++.|||.+||++||++|||+.  
T Consensus       263 F~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~--  340 (398)
T 4b99_A          263 FPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAA--  340 (398)
T ss_dssp             SCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHH--
T ss_pred             CCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHH--
Confidence            999999888888865322222110000                 0000     1234689999999999999999998  


Q ss_pred             hHHhhcCCCcCCCCc
Q 010140          455 SVEIKRHEFFKGINW  469 (517)
Q Consensus       455 ~~ell~hp~f~~~~~  469 (517)
                        |+|+||||+....
T Consensus       341 --e~L~Hp~f~~~~~  353 (398)
T 4b99_A          341 --AALRHPFLAKYHD  353 (398)
T ss_dssp             --HHTTSGGGTTTCC
T ss_pred             --HHhcCHhhCcCCC
Confidence              9999999997644

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.3e-58  Score=452.02  Aligned_cols=275  Identities=21%  Similarity=0.263  Sum_probs=211.8

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|.+.++||+|+||+||+|++.+.....++..||||+++....   ...+.+.+|+.+|++++|||||++++++.
T Consensus         9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~f~~E~~il~~l~HpnIV~l~g~~~   85 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD---NARKDFHREAELLTNLQHEHIVKFYGVCV   85 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCCh---HHHHHHHHHHHHHHhCCCCCCccEEEEEe
Confidence            355678999999999999999999987543333678999999975432   33466888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +++.+|||||||+||+|.+++............                 ......+.......|+.||+.||+|||+++
T Consensus        86 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~i~~qia~gl~yLH~~~  148 (299)
T 4asz_A           86 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAE-----------------GNPPTELTQSQMLHIAQQIAAGMVYLASQH  148 (299)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcCcccccccc-----------------cCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999764310000000                 000011222334578999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+||||+.++.+||+|||+|+.......                                             
T Consensus       149 iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~---------------------------------------------  183 (299)
T 4asz_A          149 FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDY---------------------------------------------  183 (299)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC---------------------------------------------
T ss_pred             cccCccCHhhEEECCCCcEEECCcccceecCCCCc---------------------------------------------
Confidence            99999999999999999999999999854321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     .......+||+.|||||++.+..|+.++|||||||++|||+| |+.||.
T Consensus       184 -------------------------------~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~  232 (299)
T 4asz_A          184 -------------------------------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY  232 (299)
T ss_dssp             -------------------------------EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             -------------------------------eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence                                           011223469999999999999999999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCC-CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          399 GENNEKTLINILKKPLT-FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +.+..+++..+..+... .|.   .      ++.++.+||.+||+.||++|||+.    |+  |+|++
T Consensus       233 ~~~~~~~~~~i~~~~~~~~p~---~------~~~~~~~li~~cl~~dP~~RPs~~----~i--~~~L~  285 (299)
T 4asz_A          233 QLSNNEVIECITQGRVLQRPR---T------CPQEVYELMLGCWQREPHMRKNIK----GI--HTLLQ  285 (299)
T ss_dssp             TSCHHHHHHHHHHTCCCCCCT---T------CCHHHHHHHHHHTCSSGGGSCCHH----HH--HHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCc---c------chHHHHHHHHHHcCCChhHCcCHH----HH--HHHHH
Confidence            99999998888876532 221   1      123589999999999999999997    66  34554

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.2e-57  Score=459.52  Aligned_cols=292  Identities=25%  Similarity=0.334  Sum_probs=204.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      .++|+++++||+|+||+||+|+++...  .+++.||||++.+..     ...++.+|+.+|+.+ +|||||+++++|++.
T Consensus        20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~--~~~~~vAiK~i~~~~-----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~   92 (361)
T 4f9c_A           20 SNVFKIEDKIGEGTFSSVYLATAQLQV--GPEEKIALKHLIPTS-----HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN   92 (361)
T ss_dssp             GGTCEEEEEEEECSSEEEEEEEEEBTT--SCEEEEEEEEECTTS-----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred             cCcEEEEEEEecccCcEEEEEEEcccC--CCCCEEEEEEEcccc-----CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence            378999999999999999999986321  156899999986542     234566799999998 799999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +++|||||||+||+|.+++..     +++.+                            ++.|++||+.||+|||++|||
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~~-----l~~~~----------------------------~~~~~~qll~al~ylH~~gIi  139 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILNS-----LSFQE----------------------------VREYMLNLFKALKRIHQFGIV  139 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHTT-----CCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEeCCCcccHHHHHcC-----CCHHH----------------------------HHHHHHHHHHHHHHHHHCCeE
Confidence            999999999999999998742     33333                            347889999999999999999


Q ss_pred             eccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          242 YRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       242 HrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||||+|||++.+ +.+||+|||+|+.................  ....+..                           
T Consensus       140 HRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~--~~~~~~~---------------------------  190 (361)
T 4f9c_A          140 HRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEA--QQERCSQ---------------------------  190 (361)
T ss_dssp             CSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC----------------------------------------
T ss_pred             eCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccc--ccccccc---------------------------
Confidence            99999999999876 89999999999755432211000000000  0000000                           


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                           ..............+.+||+.|||||++.+.. |+.++||||+|||+|||++|++||..
T Consensus       191 ---------------------~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~  249 (361)
T 4f9c_A          191 ---------------------NKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK  249 (361)
T ss_dssp             ------------------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             ---------------------ccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence                                 00000001122345678999999999998864 89999999999999999999999965


Q ss_pred             C-ChHHHHHHHhcC--------------------------------------CCCCCCCCCC-------CchhHHhhhhH
Q 010140          400 E-NNEKTLINILKK--------------------------------------PLTFPRIGVS-------SSKEFEEVVKL  433 (517)
Q Consensus       400 ~-~~~~~~~~i~~~--------------------------------------~~~~p~~~~~-------~~~~~~~~~~l  433 (517)
                      . ++.+.+..|...                                      ....|.....       .......+.++
T Consensus       250 ~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a  329 (361)
T 4f9c_A          250 ASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEA  329 (361)
T ss_dssp             CSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHH
T ss_pred             CCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHH
Confidence            4 444444444320                                      0000000000       00001123468


Q ss_pred             HHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          434 QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       434 ~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      +|||.+||++||++|+|+.    |+|+||||++++
T Consensus       330 ~DLl~~lL~~dP~~R~ta~----eaL~Hp~f~~i~  360 (361)
T 4f9c_A          330 YDLLDKLLDLNPASRITAE----EALLHPFFKDMS  360 (361)
T ss_dssp             HHHHHHHTCSCTTTSCCHH----HHHTSGGGTTC-
T ss_pred             HHHHHHHCcCChhHCcCHH----HHhcCcccCCCC
Confidence            9999999999999999998    999999999875

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.8e-57  Score=451.63  Aligned_cols=275  Identities=19%  Similarity=0.253  Sum_probs=208.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|.+.++||+|+||+||+|++++.....+++.||||+++....   ...+.+.+|+.+|++++|||||++++++.
T Consensus        37 ~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~f~~E~~il~~l~HpnIV~l~g~~~  113 (329)
T 4aoj_A           37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE---SARQDFQREAELLTMLQHQHIVRFFGVCT  113 (329)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCH---HHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            355678999999999999999999987543334678999999975432   33467888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+.+|||||||++|+|.+++..............               ......+...+...|+.||+.||+|||+++
T Consensus       114 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~i~~qia~gl~yLH~~~  178 (329)
T 4aoj_A          114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGE---------------DVAPGPLGLGQLLAVASQVAAGMVYLAGLH  178 (329)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHTSSCC--------------------------CCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccc---------------cccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999987532211000000               001112233344578999999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+||||+.++.+||+|||+|+.......                                             
T Consensus       179 iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~---------------------------------------------  213 (329)
T 4aoj_A          179 FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY---------------------------------------------  213 (329)
T ss_dssp             CCCSCCCGGGEEEETTTEEEECCCC-------------------------------------------------------
T ss_pred             eecccccHhhEEECCCCcEEEcccccceeccCCCc---------------------------------------------
Confidence            99999999999999999999999999854321100                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     .......+||+.|||||++.+..|+.++|||||||+||||+| |+.||.
T Consensus       214 -------------------------------~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~  262 (329)
T 4aoj_A          214 -------------------------------YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY  262 (329)
T ss_dssp             -------------------------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             -------------------------------ceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCC
Confidence                                           111234579999999999999999999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          399 GENNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +.+..+.+..+..+.. ..|.   .      ++.++.+||.+||+.||++|||+.    ||+++
T Consensus       263 ~~~~~~~~~~i~~g~~~~~p~---~------~~~~~~~li~~cl~~dP~~RPs~~----ei~~~  313 (329)
T 4aoj_A          263 QLSNTEAIDCITQGRELERPR---A------CPPEVYAIMRGCWQREPQQRHSIK----DVHAR  313 (329)
T ss_dssp             SSCHHHHHHHHHHTCCCCCCT---T------CCHHHHHHHHHHCCSSTTTSCCHH----HHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCcc---c------ccHHHHHHHHHHcCcChhHCcCHH----HHHHH
Confidence            9999888888877542 2222   1      123589999999999999999997    77653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=8.5e-58  Score=449.88  Aligned_cols=279  Identities=20%  Similarity=0.240  Sum_probs=212.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .++..++++++++||+|+||+||+|+........+++.||||+++....  ....+.+.+|+.+|++++|||||++++++
T Consensus        21 ~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~--~~~~~~f~~E~~il~~l~HpNIV~l~g~~   98 (308)
T 4gt4_A           21 KEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE--GPLREEFRHEAMLRARLQHPNVVCLLGVV   98 (308)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC--C-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC--hHHHHHHHHHHHHHHhCCCCCCCCcceEE
Confidence            3567789999999999999999999986543334678999999975421  12345678899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++.+|||||||++|+|.++|..............              .......+.......|+.||+.||+|||++
T Consensus        99 ~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~i~~qia~gl~yLH~~  164 (308)
T 4gt4_A           99 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDD--------------DRTVKSALEPPDFVHLVAQIAAGMEYLSSH  164 (308)
T ss_dssp             CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-------------------CCEECCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHhhCcccccccccc--------------ccccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999976432110000000              000011222334457899999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      +||||||||+||||+.++.+||+|||+|+......                                             
T Consensus       165 ~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~---------------------------------------------  199 (308)
T 4gt4_A          165 HVVHKDLATRNVLVYDKLNVKISDLGLFREVYAAD---------------------------------------------  199 (308)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGG---------------------------------------------
T ss_pred             CCCCCCccccceEECCCCCEEECCcccceeccCCC---------------------------------------------
Confidence            99999999999999999999999999985432100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                     ........+||+.|||||++.+..|+.++|||||||+||||+| |..||
T Consensus       200 -------------------------------~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf  248 (308)
T 4gt4_A          200 -------------------------------YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY  248 (308)
T ss_dssp             -------------------------------CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             -------------------------------ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCC
Confidence                                           0112334579999999999999999999999999999999998 89999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+.+..+++..+..+.....+  ..      ++.++.+||.+||+.||++||++.    ||+++
T Consensus       249 ~~~~~~~~~~~i~~~~~~~~p--~~------~~~~~~~li~~C~~~dP~~RPs~~----ei~~~  300 (308)
T 4gt4_A          249 CGYSNQDVVEMIRNRQVLPCP--DD------CPAWVYALMIECWNEFPSRRPRFK----DIHSR  300 (308)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCc--cc------chHHHHHHHHHHcCCChhHCcCHH----HHHHH
Confidence            999998888888776432111  11      223589999999999999999997    66543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.4e-57  Score=485.74  Aligned_cols=265  Identities=28%  Similarity=0.404  Sum_probs=225.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      .+++|++++.||+|+||+||+|+++.     +++.||||++......   ....+.+|+.+|+.|+|||||+++++|++.
T Consensus       155 il~~Y~i~~~lG~G~fg~V~~~~~~~-----tg~~~AiK~i~~~~~~---~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~  226 (573)
T 3uto_A          155 VLDHYDIHEELGTGAFGVVHRVTERA-----TGNNFAAKFVMTPHES---DKETVRKEIQTMSVLRHPTLVNLHDAFEDD  226 (573)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCSHH---HHHHHHHHHHHHHHTCCTTBCCEEEEEECS
T ss_pred             CccccEEEEEEeeccCeEEEEEEECC-----CCCEEEEEEEeccchh---hHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            35789999999999999999999987     7889999998765432   234567799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|||||||+||+|.+++.... ..+++.+                            ++.|++||+.||+|||++||+
T Consensus       227 ~~~~iv~E~~~gg~L~~~i~~~~-~~l~e~~----------------------------~~~~~~qi~~al~ylH~~~ii  277 (573)
T 3uto_A          227 NEMVMIYEFMSGGELFEKVADEH-NKMSEDE----------------------------AVEYMRQVCKGLCHMHENNYV  277 (573)
T ss_dssp             SEEEEEEECCCCCBHHHHHTCTT-SCEEHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEeecCCCcHHHHHHHhC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999886432 2333333                            347889999999999999999


Q ss_pred             eccCCCCceEEccC--CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          242 YRDLKPENVLVRED--GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       242 HrDLKp~NILl~~~--~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||+|||++.+  +.+||+|||+|+.+...                                               
T Consensus       278 HRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~-----------------------------------------------  310 (573)
T 3uto_A          278 HLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-----------------------------------------------  310 (573)
T ss_dssp             CCCCCGGGEEESSSSCCCEEECCCSSCEECCTT-----------------------------------------------
T ss_pred             eccCChhhccccCCCCCCEEEeeccceeEccCC-----------------------------------------------
Confidence            99999999999854  89999999999554311                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      ......+||+.|||||++.+..|+.++|||||||++|||++|.+||.+
T Consensus       311 --------------------------------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~  358 (573)
T 3uto_A          311 --------------------------------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG  358 (573)
T ss_dssp             --------------------------------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             --------------------------------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence                                            112345899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      .+..+.+..|......++......     .+.++++||.+||+.||.+|||+.    |+|+||||+..+|..
T Consensus       359 ~~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~dli~~~L~~dp~~R~t~~----e~l~Hpw~~~~~~~~  421 (573)
T 3uto_A          359 ENDDETLRNVKSCDWNMDDSAFSG-----ISEDGKDFIRKLLLADPNTRMTIH----QALEHPWLTPGNAPG  421 (573)
T ss_dssp             SSHHHHHHHHHTTCCCCCSGGGTT-----SCHHHHHHHHTTSCSSGGGSCCHH----HHHHSTTTSCCCCTT
T ss_pred             cCHHHHHHHHHhCCCCCCcccccC-----CCHHHHHHHHHHccCChhHCcCHH----HHhcCcCcCCCCCCC
Confidence            999999999998877665443222     223589999999999999999997    999999999988854

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2e-57  Score=445.56  Aligned_cols=269  Identities=21%  Similarity=0.310  Sum_probs=205.9

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..|++..++|++.++||+|+||+||+|++++        .||||+++..... ....+.+.+|+.+|++++|||||++++
T Consensus        29 ~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--------~vAvK~~~~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g   99 (307)
T 3omv_A           29 YYWEIEASEVMLSTRIGSGSFGTVYKGKWHG--------DVAVKILKVVDPT-PEQFQAFRNEVAVLRKTRHVNILLFMG   99 (307)
T ss_dssp             CCCBCCTTSCCEEEECCCCSSSEEEEEESSS--------EEEEEECCCSSCC-HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cCcEEcHHHeEEeeEEeeCCCcEEEEEEECC--------cEEEEEEEecCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            4567888999999999999999999998653        4899998643211 234567888999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+ +.+|||||||+||+|.+++.... ..+++...                            ..|+.||+.||+|||
T Consensus       100 ~~~~-~~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~----------------------------~~i~~qia~gL~yLH  149 (307)
T 3omv_A          100 YMTK-DNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQL----------------------------IDIARQTAQGMDYLH  149 (307)
T ss_dssp             EECS-SSCEEEEECCSSCBHHHHHHTSC-CCCCHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             EEEC-CeEEEEEEcCCCCCHHHHHhhcC-CCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            8865 56899999999999999987643 22333222                            378899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +++||||||||+||||+.++.+||+|||+|+......                                           
T Consensus       150 ~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~-------------------------------------------  186 (307)
T 3omv_A          150 AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS-------------------------------------------  186 (307)
T ss_dssp             HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------------------------------------------
T ss_pred             HCCccCCccCHHHEEECCCCcEEEeeccCceecccCC-------------------------------------------
Confidence            9999999999999999999999999999995432100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG  393 (517)
                                                       ........+||+.|||||++.+.   .|+.++|||||||+||||+||
T Consensus       187 ---------------------------------~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg  233 (307)
T 3omv_A          187 ---------------------------------GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTG  233 (307)
T ss_dssp             ----------------------------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHC
Confidence                                             01123456899999999999753   589999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCCh--HHhhcCCC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGS--VEIKRHEF  463 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~--~ell~hp~  463 (517)
                      +.||.+.+....+..++......|.......   .++.++.+||.+||+.||++|||+.+.+  .|+|+|++
T Consensus       234 ~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l  302 (307)
T 3omv_A          234 ELPYSHINNRDQIIFMVGRGYASPDLSKLYK---NCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL  302 (307)
T ss_dssp             SCTTTTCCCHHHHHHHHHTTCCCCCSTTSCT---TSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCChHHHHHHHHhcCCCCCCcccccc---cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence            9999988777666666554443332211110   1233589999999999999999987322  13456665

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-56  Score=452.55  Aligned_cols=282  Identities=39%  Similarity=0.731  Sum_probs=236.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      ++..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|..+|..+ +||||++++++|
T Consensus        19 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~   93 (353)
T 3txo_A           19 RLGIDNFEFIRVLGKGSFGKVMLARVKE-----TGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF   93 (353)
T ss_dssp             ----CCEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             CCchhheEEEEEEeeCCCEEEEEEEEcC-----CCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE
Confidence            3567899999999999999999999986     6789999999987666666677788899999988 799999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+.+|||||||+||+|..++...  ..+++..                            ++.|+.||+.||+|||++
T Consensus        94 ~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~aL~~LH~~  143 (353)
T 3txo_A           94 QTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEAR----------------------------ARFYAAEIISALMFLHDK  143 (353)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999988764  2333332                            247889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+||||+.+|++||+|||+++....                                               
T Consensus       144 givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~-----------------------------------------------  176 (353)
T 3txo_A          144 GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC-----------------------------------------------  176 (353)
T ss_dssp             TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-----------------------------------------------
T ss_pred             CCcccCCCHHHEEECCCCCEEEccccceeeccc-----------------------------------------------
Confidence            999999999999999999999999999843110                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........+||+.|+|||++.+..|+.++|||||||++|||++|..||.
T Consensus       177 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~  225 (353)
T 3txo_A          177 -------------------------------NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE  225 (353)
T ss_dssp             ----------------------------------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             -------------------------------CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCC
Confidence                                           0112345689999999999998889999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCCCCcccc--cC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKGINWALI--RS  474 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~~~~~~~--~~  474 (517)
                      +.+..+.+..+......+|...         ..++.+||.+||+.||.+||++.  ..+.|+++||||++++|..+  +.
T Consensus       226 ~~~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~  296 (353)
T 3txo_A          226 AENEDDLFEAILNDEVVYPTWL---------HEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQ  296 (353)
T ss_dssp             CSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHHHTTC
T ss_pred             CCCHHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHHHHhcCc
Confidence            9999999999999887776432         12489999999999999999982  34459999999999999987  56


Q ss_pred             CCCCCCCCC
Q 010140          475 IKPPEVPNN  483 (517)
Q Consensus       475 ~~p~~~~~~  483 (517)
                      +.||+.|..
T Consensus       297 ~~~p~~p~~  305 (353)
T 3txo_A          297 IEPPFRPRI  305 (353)
T ss_dssp             SCCSCCCCC
T ss_pred             CCCCccCCC
Confidence            788888763

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=8e-57  Score=450.63  Aligned_cols=280  Identities=19%  Similarity=0.237  Sum_probs=212.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC-CCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH-PFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~  157 (517)
                      +++..++|++++.||+|+||+||+|++.......+.+.||||++......  ...+.+.+|+.+|.++.| ||||+++++
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~--~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccCh--HHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            46778999999999999999999999987655556788999999764322  334567889999999965 999999999


Q ss_pred             eec-CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          158 FEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       158 ~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      |.. ++.+|||||||++|+|.++|+.............              .......+...++..|+.||+.||+|||
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~qia~gl~yLH  202 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAP--------------EDLYKDFLTLEHLICYSFQVAKGMEFLA  202 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC---------------------CTTCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccc--------------hhhccccCCHHHHHHHHHHHHHHHHhHh
Confidence            865 5679999999999999999976532211110000              0001122333445688999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +++||||||||+|||++.++.+||+|||+|+.+.....                                          
T Consensus       203 ~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~------------------------------------------  240 (353)
T 4ase_A          203 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD------------------------------------------  240 (353)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTT------------------------------------------
T ss_pred             hCCeecCccCccceeeCCCCCEEECcchhhhhcccCCC------------------------------------------
Confidence            99999999999999999999999999999964331110                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        .......+||+.|||||++.+..|+.++|||||||+||||+| |..
T Consensus       241 ----------------------------------~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~  286 (353)
T 4ase_A          241 ----------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS  286 (353)
T ss_dssp             ----------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred             ----------------------------------ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCC
Confidence                                              111234579999999999999999999999999999999998 999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||.+....+.+.+++......+... ..      +.++.+||.+||+.||++|||+.    ||++|
T Consensus       287 Pf~~~~~~~~~~~~i~~g~~~~~p~-~~------~~~~~~li~~c~~~dP~~RPt~~----eil~~  341 (353)
T 4ase_A          287 PYPGVKIDEEFCRRLKEGTRMRAPD-YT------TPEMYQTMLDCWHGEPSQRPTFS----ELVEH  341 (353)
T ss_dssp             SSTTCCCSHHHHHHHHHTCCCCCCT-TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCc-cC------CHHHHHHHHHHcCcChhHCcCHH----HHHHH
Confidence            9998775554444443222222111 11      23589999999999999999997    88876

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7e-56  Score=444.02  Aligned_cols=281  Identities=38%  Similarity=0.701  Sum_probs=237.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||++++++|.+
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~   76 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT   76 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe
Confidence            456899999999999999999999886     678999999988765555566778889999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+.+|+||||++||+|..++...  ..+++..                            ++.++.||+.||+|||++||
T Consensus        77 ~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~aL~~LH~~~i  126 (337)
T 1o6l_A           77 HDRLCFVMEYANGGELFFHLSRE--RVFTEER----------------------------ARFYGAEIVSALEYLHSRDV  126 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH--SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999988754  2233322                            34788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.+|++||+|||+++.....                                                
T Consensus       127 vHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~------------------------------------------------  158 (337)
T 1o6l_A          127 VYRDIKLENLMLDKDGHIKITDFGLCKEGISD------------------------------------------------  158 (337)
T ss_dssp             BCCCCCGGGEEECTTSCEEECCCTTCBCSCCT------------------------------------------------
T ss_pred             ecCcCCHHHEEECCCCCEEEeeccchhhcccC------------------------------------------------
Confidence            99999999999999999999999998432100                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.
T Consensus       159 ------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          159 ------------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             ------------------------------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------------------------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence                                          11223467999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      +....+..+......+|...         +.++.+||.+||+.||++||+.. ..+.|+++||||++++|..+  +.+.|
T Consensus       209 ~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~~~~~~~p  279 (337)
T 1o6l_A          209 DHERLFELILMEEIRFPRTL---------SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLP  279 (337)
T ss_dssp             SHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CHHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCC
Confidence            98888888888777666422         22589999999999999999542 23559999999999999977  56778


Q ss_pred             CCCCCC
Q 010140          478 PEVPNN  483 (517)
Q Consensus       478 ~~~~~~  483 (517)
                      |+.|..
T Consensus       280 p~~p~~  285 (337)
T 1o6l_A          280 PFKPQV  285 (337)
T ss_dssp             SCCCCC
T ss_pred             CCCCCC
Confidence            888763

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-55  Score=437.82  Aligned_cols=278  Identities=37%  Similarity=0.745  Sum_probs=237.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +.+++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||+++++++.+
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~   77 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRH-----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD   77 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe
Confidence            457899999999999999999999886     678999999988765544556777889999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+|+||||++||+|.+++...  ..++...+                            +.++.||+.||+|||++||
T Consensus        78 ~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~aL~~LH~~~i  127 (318)
T 1fot_A           78 AQQIFMIMDYIEGGELFSLLRKS--QRFPNPVA----------------------------KFYAAEVCLALEYLHSKDI  127 (318)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHT--SSCCHHHH----------------------------HHHHHHHHHHHHHHHTTTE
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCc
Confidence            99999999999999999998764  22333222                            4678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.+|++||+|||+++....                                                 
T Consensus       128 vHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~-------------------------------------------------  158 (318)
T 1fot_A          128 IYRDLKPENILLDKNGHIKITDFGFAKYVPD-------------------------------------------------  158 (318)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCSSCEECSS-------------------------------------------------
T ss_pred             cccCCChheEEEcCCCCEEEeecCcceecCC-------------------------------------------------
Confidence            9999999999999999999999999843210                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                      .....+||+.|+|||++.+..++.++|||||||++|||++|..||.+.
T Consensus       159 --------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          159 --------------------------------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             --------------------------------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             --------------------------------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence                                            123457999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      +..+.+.++......+|...         ..++.+||.+||+.||.+||+..+ .++|+++||||++++|+.+  +.+.|
T Consensus       207 ~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~  277 (318)
T 1fot_A          207 NTMKTYEKILNAELRFPPFF---------NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIET  277 (318)
T ss_dssp             SHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCC
T ss_pred             CHHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHHHHHhCCCCC
Confidence            99899999988877666422         125899999999999999995432 4559999999999999987  55778


Q ss_pred             CCCCCC
Q 010140          478 PEVPNN  483 (517)
Q Consensus       478 ~~~~~~  483 (517)
                      |+.|..
T Consensus       278 p~~p~~  283 (318)
T 1fot_A          278 PYEPPI  283 (318)
T ss_dssp             SCCCCC
T ss_pred             CCCCCc
Confidence            887764

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.1e-55  Score=451.01  Aligned_cols=283  Identities=37%  Similarity=0.696  Sum_probs=232.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ..+..++|++++.||+|+||.||+|+++.     +++.||||++++...........+..|..+|.++ +|||||+++++
T Consensus        47 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~-----~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~  121 (396)
T 4dc2_A           47 SSLGLQDFDLLRVIGRGSYAKVLLVRLKK-----TDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSC  121 (396)
T ss_dssp             --CCGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             cCCChhHcEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEE
Confidence            34677899999999999999999999987     6789999999876554455667778899999887 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |.+.+.+|||||||+||+|..++...  ..+++..                            ++.|+.||+.||+|||+
T Consensus       122 ~~~~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~aL~~LH~  171 (396)
T 4dc2_A          122 FQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEH----------------------------ARFYSAEISLALNYLHE  171 (396)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764  2333332                            34788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+||||+.+|++||+|||+++....                                              
T Consensus       172 ~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~----------------------------------------------  205 (396)
T 4dc2_A          172 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR----------------------------------------------  205 (396)
T ss_dssp             TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC----------------------------------------------
T ss_pred             CCEEeccCCHHHEEECCCCCEEEeecceeeeccc----------------------------------------------
Confidence            9999999999999999999999999999843110                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ........+||+.|+|||++.+..|+.++|||||||++|||++|.+||
T Consensus       206 --------------------------------~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf  253 (396)
T 4dc2_A          206 --------------------------------PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF  253 (396)
T ss_dssp             --------------------------------TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------------------------CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence                                            011234568999999999999999999999999999999999999999


Q ss_pred             CCC---------ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCC
Q 010140          398 KGE---------NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKG  466 (517)
Q Consensus       398 ~~~---------~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~  466 (517)
                      .+.         ........+......+|...         ..++++||.+||+.||.+||++.  ..+.|+++||||++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~  324 (396)
T 4dc2_A          254 DIVGSSDNPDQNTEDYLFQVILEKQIRIPRSL---------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  324 (396)
T ss_dssp             TTTTC------CCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTT
T ss_pred             cccccccccchhhHHHHHHHHhccccCCCCcC---------CHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccC
Confidence            643         23345667777776666432         12489999999999999999984  24579999999999


Q ss_pred             CCcccc--cCCCCCCCCCC
Q 010140          467 INWALI--RSIKPPEVPNN  483 (517)
Q Consensus       467 ~~~~~~--~~~~p~~~~~~  483 (517)
                      ++|+.+  +.+.||+.|..
T Consensus       325 i~w~~l~~~~~~pp~~p~~  343 (396)
T 4dc2_A          325 VDWDMMEQKQVVPPFKPNI  343 (396)
T ss_dssp             CCHHHHHTTCSCCSCCCCC
T ss_pred             CCHHHHHcCCCCCCCcCCC
Confidence            999977  56788988864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.9e-55  Score=443.54  Aligned_cols=282  Identities=35%  Similarity=0.667  Sum_probs=239.2

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      ++..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|..+|..+ +||||++++++|
T Consensus        16 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~   90 (353)
T 2i0e_A           16 RMKLTDFNFLMVLGKGSFGKVMLSERKG-----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF   90 (353)
T ss_dssp             ---CTTEEEEEEEEEETTEEEEEEEETT-----EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE
T ss_pred             CCchHHcEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE
Confidence            4567899999999999999999999886     6789999999887665555667788899999988 899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ++.+.+|+|||||+||+|.+++...  ..+++..                            ++.|+.||+.||+|||++
T Consensus        91 ~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~aL~~LH~~  140 (353)
T 2i0e_A           91 QTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPH----------------------------AVFYAAEIAIGLFFLQSK  140 (353)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999998764  2233322                            247889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.+|++||+|||+++....                                               
T Consensus       141 givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-----------------------------------------------  173 (353)
T 2i0e_A          141 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW-----------------------------------------------  173 (353)
T ss_dssp             TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-----------------------------------------------
T ss_pred             CEEeccCCHHHEEEcCCCcEEEEeCCccccccc-----------------------------------------------
Confidence            999999999999999999999999999843110                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       174 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~  222 (353)
T 2i0e_A          174 -------------------------------DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE  222 (353)
T ss_dssp             -------------------------------TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             -------------------------------CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCC
Confidence                                           0112245689999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSI  475 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~  475 (517)
                      +.+..+.+..+......+|...         +.++.+||.+||..||.+||++. ..+.++++||||++++|+.+  +.+
T Consensus       223 ~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~  293 (353)
T 2i0e_A          223 GEDEDELFQSIMEHNVAYPKSM---------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEI  293 (353)
T ss_dssp             CSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHHTTCS
T ss_pred             CCCHHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHHHHHhCCC
Confidence            9999999999998877766421         22589999999999999999873 24579999999999999988  667


Q ss_pred             CCCCCCCC
Q 010140          476 KPPEVPNN  483 (517)
Q Consensus       476 ~p~~~~~~  483 (517)
                      .||+.|..
T Consensus       294 ~~p~~p~~  301 (353)
T 2i0e_A          294 QPPYKPKA  301 (353)
T ss_dssp             CCSCCCCC
T ss_pred             CCCcCCCC
Confidence            89988864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=5.9e-55  Score=439.73  Aligned_cols=280  Identities=36%  Similarity=0.675  Sum_probs=240.1

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ....+++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||+++++++
T Consensus        36 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  110 (350)
T 1rdq_E           36 NTAQLDQFDRIKTLGTGSFGRVMLVKHKE-----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF  110 (350)
T ss_dssp             CCCCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cCCCHHHCEEEEEeecCcCcEEEEEEECC-----CCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            34667899999999999999999999886     6789999999887665555667788899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+...+|+||||++||+|.+++....  .+++..                            ++.|+.||+.||+|||++
T Consensus       111 ~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~aL~~LH~~  160 (350)
T 1rdq_E          111 KDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPH----------------------------ARFYAAQIVLTFEYLHSL  160 (350)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987642  233322                            247889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.+|.+||+|||+++....                                               
T Consensus       161 ~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~-----------------------------------------------  193 (350)
T 1rdq_E          161 DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG-----------------------------------------------  193 (350)
T ss_dssp             TEECCCCSGGGEEECTTSCEEECCCTTCEECSS-----------------------------------------------
T ss_pred             CcccccCccceEEECCCCCEEEcccccceeccC-----------------------------------------------
Confidence            999999999999999999999999999843210                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                        .....+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       194 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  239 (350)
T 1rdq_E          194 ----------------------------------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF  239 (350)
T ss_dssp             ----------------------------------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ----------------------------------CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCC
Confidence                                              1124579999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSI  475 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~  475 (517)
                      +.+..+.+..+..+...+|...         ..++.+||.+||+.||.+||+.. ..+.|+++||||++++|..+  +.+
T Consensus       240 ~~~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~~~~~~  310 (350)
T 1rdq_E          240 ADQPIQIYEKIVSGKVRFPSHF---------SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV  310 (350)
T ss_dssp             CSSHHHHHHHHHHCCCCCCTTC---------CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCS
T ss_pred             CCCHHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCCHHHHhhccC
Confidence            9999999999988877665421         22589999999999999999832 33569999999999999977  567


Q ss_pred             CCCCCCCC
Q 010140          476 KPPEVPNN  483 (517)
Q Consensus       476 ~p~~~~~~  483 (517)
                      .||++|..
T Consensus       311 ~~p~~p~~  318 (350)
T 1rdq_E          311 EAPFIPKF  318 (350)
T ss_dssp             CCSCCCCC
T ss_pred             CCCCCCCC
Confidence            88888764

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=3e-55  Score=440.66  Aligned_cols=280  Identities=37%  Similarity=0.745  Sum_probs=231.5

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ..+..++|++++.||+|+||.||+|+++.     +++.||||++++...........+..|..+|..+ +||||++++++
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~   86 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKK-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCT   86 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEE
Confidence            34667899999999999999999999986     6789999999887655455566777899999887 99999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |.+.+.+|+|||||+||+|.+++...  ..+++..+                            +.|+.||+.||+|||+
T Consensus        87 ~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~aL~~LH~  136 (345)
T 1xjd_A           87 FQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRA----------------------------TFYAAEIILGLQFLHS  136 (345)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764  22333322                            4788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.+|++||+|||+++....                                              
T Consensus       137 ~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~----------------------------------------------  170 (345)
T 1xjd_A          137 KGIVYRDLKLDNILLDKDGHIKIADFGMCKENML----------------------------------------------  170 (345)
T ss_dssp             TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC----------------------------------------------
T ss_pred             CCeEeCCCChhhEEECCCCCEEEeEChhhhhccc----------------------------------------------
Confidence            9999999999999999999999999999843210                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ........+||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       171 --------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf  218 (345)
T 1xjd_A          171 --------------------------------GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF  218 (345)
T ss_dssp             --------------------------------TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------------------------CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCC
Confidence                                            011234568999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSI  475 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~  475 (517)
                      .+.+..+.+..+......+|...         ..++.+||.+||+.||++||++.   .++++||||++++|+.+  +.+
T Consensus       219 ~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dp~~R~~~~---~~i~~hp~f~~~~w~~l~~~~~  286 (345)
T 1xjd_A          219 HGQDEEELFHSIRMDNPFYPRWL---------EKEAKDLLVKLFVREPEKRLGVR---GDIRQHPLFREINWEELERKEI  286 (345)
T ss_dssp             CCSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHSCSSGGGSBTTB---SCGGGSGGGTTCCHHHHHTTCS
T ss_pred             CCCCHHHHHHHHHhCCCCCCccc---------CHHHHHHHHHHhcCCHhHcCCCh---HHHHcCccccCCCHHHHhhCCC
Confidence            99999999989888776665421         22589999999999999999984   28999999999999988  567


Q ss_pred             CCCCCCCC
Q 010140          476 KPPEVPNN  483 (517)
Q Consensus       476 ~p~~~~~~  483 (517)
                      .||+.|..
T Consensus       287 ~~p~~p~~  294 (345)
T 1xjd_A          287 DPPFRPKV  294 (345)
T ss_dssp             CC------
T ss_pred             CCCcCCCC
Confidence            88888763

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.5e-55  Score=447.44  Aligned_cols=281  Identities=41%  Similarity=0.682  Sum_probs=229.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHH-HHhcCCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI-LTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~i-l~~l~HpnIv~l~~~~~  159 (517)
                      +..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|..+ ++.++||||++++++|.
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~  109 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKA-----EEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ  109 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETT-----TCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcC-----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE
Confidence            456889999999999999999999886     678999999987654333444556667776 56789999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+.+|+|||||+||+|..++...  ..+.+.                            .++.|+.||+.||+|||++|
T Consensus       110 ~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~----------------------------~~~~~~~qi~~aL~~LH~~g  159 (373)
T 2r5t_A          110 TADKLYFVLDYINGGELFYHLQRE--RCFLEP----------------------------RARFYAAEIASALGYLHSLN  159 (373)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH--SSCCHH----------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999988764  223322                            22478899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.+|++||+|||+++....                                                
T Consensus       160 ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~------------------------------------------------  191 (373)
T 2r5t_A          160 IVYRDLKPENILLDSQGHIVLTDFGLCKENIE------------------------------------------------  191 (373)
T ss_dssp             CCCCCCCGGGEEECTTSCEEECCCCBCGGGBC------------------------------------------------
T ss_pred             ceecCCCHHHEEECCCCCEEEeeCcccccccc------------------------------------------------
Confidence            99999999999999999999999999843110                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    ........+||+.|+|||++.+..++.++|||||||++|||++|..||.+
T Consensus       192 ------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~  241 (373)
T 2r5t_A          192 ------------------------------HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYS  241 (373)
T ss_dssp             ------------------------------CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             ------------------------------CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence                                          01123456899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      .+..+.+..+......++...         ...+++||.+||+.||.+||++.+.+.++++||||++++|+.+  +.+.|
T Consensus       242 ~~~~~~~~~i~~~~~~~~~~~---------~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~p  312 (373)
T 2r5t_A          242 RNTAEMYDNILNKPLQLKPNI---------TNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITP  312 (373)
T ss_dssp             SBHHHHHHHHHHSCCCCCSSS---------CHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CCHHHHHHHHHhcccCCCCCC---------CHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCCHHHHHhCCCCC
Confidence            999999999988776665321         1248999999999999999999888889999999999999987  66789


Q ss_pred             CCCCCC
Q 010140          478 PEVPNN  483 (517)
Q Consensus       478 ~~~~~~  483 (517)
                      |+.|..
T Consensus       313 p~~p~~  318 (373)
T 2r5t_A          313 PFNPNV  318 (373)
T ss_dssp             SCCCSC
T ss_pred             CCCCCC
Confidence            888864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=3.8e-55  Score=452.66  Aligned_cols=287  Identities=33%  Similarity=0.587  Sum_probs=239.4

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcccee
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~  155 (517)
                      ....++..++|+++++||+|+||+||+|+++.     +++.||||++.+...........+.+|+.+|..++||||++++
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~-----~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~  140 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKN-----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLH  140 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEE
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcC-----CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            34556778999999999999999999999987     6789999999887655555556688899999999999999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      ++|.+.+.+|||||||+||+|.+++.... ..+++..                            ++.|+.||+.||+||
T Consensus       141 ~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~----------------------------~~~~~~qi~~aL~~L  191 (437)
T 4aw2_A          141 YAFQDDNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEM----------------------------ARFYLAEMVIAIDSV  191 (437)
T ss_dssp             EEEECSSEEEEEECCCTTCBHHHHHHTTT-TCCCHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             EEEeeCCEEEEEEecCCCCcHHHHHHHcc-CCCCHHH----------------------------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999987632 2333332                            247889999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++|||||||||+||||+.+|++||+|||+|+......                                          
T Consensus       192 H~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~------------------------------------------  229 (437)
T 4aw2_A          192 HQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG------------------------------------------  229 (437)
T ss_dssp             HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS------------------------------------------
T ss_pred             HhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCC------------------------------------------
Confidence            99999999999999999999999999999985432100                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHHH
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~el  390 (517)
                                                         .......+||+.|+|||++.     +..|+.++|||||||++|||
T Consensus       230 -----------------------------------~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~el  274 (437)
T 4aw2_A          230 -----------------------------------TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM  274 (437)
T ss_dssp             -----------------------------------CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHH
Confidence                                               01123457999999999997     45689999999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCC
Q 010140          391 LYGTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~  466 (517)
                      ++|++||.+.+..+.+.+++...  ..+|......+      .++++||.+||..+|++  |++++    |+++||||++
T Consensus       275 ltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s------~~~~dLi~~lL~~~~~r~~r~~~~----eil~Hpff~~  344 (437)
T 4aw2_A          275 LYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVS------ENAKDLIRRLICSREHRLGQNGIE----DFKKHPFFSG  344 (437)
T ss_dssp             HHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSC------HHHHHHHHTTSSCGGGCTTTTTTH----HHHTSGGGTT
T ss_pred             HhCCCCCCCCChhHHHHhhhhccccccCCcccccCC------HHHHHHHHHHhcccccccCCCCHH----HHhCCCccCC
Confidence            99999999999988888887532  34444322222      24899999999998888  88887    9999999999


Q ss_pred             CCcccccCCCCCCCCCC
Q 010140          467 INWALIRSIKPPEVPNN  483 (517)
Q Consensus       467 ~~~~~~~~~~p~~~~~~  483 (517)
                      ++|+.++.+.||++|..
T Consensus       345 i~w~~l~~~~~p~~P~~  361 (437)
T 4aw2_A          345 IDWDNIRNCEAPYIPEV  361 (437)
T ss_dssp             CCTTTGGGSCCSCCCCC
T ss_pred             CCHHHHhhCCCCCCCcC
Confidence            99999999999998864

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.7e-55  Score=446.86  Aligned_cols=290  Identities=33%  Similarity=0.620  Sum_probs=238.2

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccce
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTL  154 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l  154 (517)
                      .....++..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|..++||||+++
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~-----~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l  126 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQ-----TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQL  126 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeE
Confidence            344556778999999999999999999999986     678999999988766656667778889999999999999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      +++|.+.+.+|||||||+||+|.+++.... ..+++..                            ++.|+.||+.||+|
T Consensus       127 ~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~----------------------------~~~~~~qi~~aL~~  177 (412)
T 2vd5_A          127 HFAFQDENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEM----------------------------ARFYLAEIVMAIDS  177 (412)
T ss_dssp             EEEEECSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             EEEEeeCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence            999999999999999999999999987642 2233322                            24788999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++|||||||||+|||++.+|++||+|||+++......                                         
T Consensus       178 LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~-----------------------------------------  216 (412)
T 2vd5_A          178 VHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG-----------------------------------------  216 (412)
T ss_dssp             HHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS-----------------------------------------
T ss_pred             HHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCC-----------------------------------------
Confidence            999999999999999999999999999999985432100                                         


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-------CCCCCccchHHHHHHHH
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-------GQGHGSAVDWWTLGVFL  387 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-------~~~~~~~~DiWSlGvil  387 (517)
                                                          .......+||+.|+|||++.       +..|+.++|||||||++
T Consensus       217 ------------------------------------~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvil  260 (412)
T 2vd5_A          217 ------------------------------------TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFA  260 (412)
T ss_dssp             ------------------------------------CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHH
T ss_pred             ------------------------------------ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHH
Confidence                                                00123457999999999997       34689999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      |||++|+.||.+.+..+.+.++....  ..+|......+      .++++||.+||. +|.+|++. ..++|+++||||+
T Consensus       261 yelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s------~~~~dli~~lL~-~p~~Rlgr-~~~~ei~~Hpff~  332 (412)
T 2vd5_A          261 YEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVP------EEARDFIQRLLC-PPETRLGR-GGAGDFRTHPFFF  332 (412)
T ss_dssp             HHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCC------HHHHHHHHTTSS-CGGGCTTT-TTHHHHHTSGGGT
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCC------HHHHHHHHHHcC-ChhhcCCC-CCHHHHhcCCCcC
Confidence            99999999999999888888887532  33333211222      358999999999 99999753 2345999999999


Q ss_pred             CCCcccccCCCCCCCCCC
Q 010140          466 GINWALIRSIKPPEVPNN  483 (517)
Q Consensus       466 ~~~~~~~~~~~p~~~~~~  483 (517)
                      +++|+.++...||++|..
T Consensus       333 ~i~w~~l~~~~~p~~p~~  350 (412)
T 2vd5_A          333 GLDWDGLRDSVPPFTPDF  350 (412)
T ss_dssp             TCCSTTSTTSCCSCCCC-
T ss_pred             CCCHHHHhhcCCCCCCcC
Confidence            999999999999998864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=8.3e-55  Score=446.72  Aligned_cols=283  Identities=36%  Similarity=0.631  Sum_probs=236.3

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ...++..++|++++.||+|+||.||+|+++.     +++.||+|++.+...........+.+|+.+|+.++|||||++++
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~-----~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~  136 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKS-----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFY  136 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEE
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECC-----CCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3456778999999999999999999999987     67899999998876555555666788999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      +|.+.+.+|||||||+||+|.+++...   .+++..+                            +.|+.||+.||+|||
T Consensus       137 ~~~~~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~----------------------------~~~~~qi~~aL~~LH  185 (410)
T 3v8s_A          137 AFQDDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWA----------------------------RFYTAEVVLALDAIH  185 (410)
T ss_dssp             EEECSSEEEEEECCCTTEEHHHHHHHC---CCCHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            999999999999999999999988753   2333222                            478899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.+|++||+|||+++......                                           
T Consensus       186 ~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~-------------------------------------------  222 (410)
T 3v8s_A          186 SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG-------------------------------------------  222 (410)
T ss_dssp             HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS-------------------------------------------
T ss_pred             HCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCC-------------------------------------------
Confidence            9999999999999999999999999999985432100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC----CCccchHHHHHHHHHHHhh
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG----HGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~----~~~~~DiWSlGvil~ellt  392 (517)
                                                        .....+.+||+.|+|||++.+..    |+.++|||||||++|||++
T Consensus       223 ----------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~  268 (410)
T 3v8s_A          223 ----------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV  268 (410)
T ss_dssp             ----------------------------------EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh
Confidence                                              01123568999999999998765    7899999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchhHHhhhhHHHHHHHhccCCccc--ccCCCCChHHhhcCCCcCCCC
Q 010140          393 GTTPFKGENNEKTLINILKKP--LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK--RIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~--R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |.+||.+.+..+.+.++....  ..+|.....       +.++++||.+||..+|.+  |+++.    ||++||||++++
T Consensus       269 G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~-------s~~~~~li~~lL~~~~~rlgR~~~~----ei~~Hp~f~~~~  337 (410)
T 3v8s_A          269 GDTPFYADSLVGTYSKIMNHKNSLTFPDDNDI-------SKEAKNLICAFLTDREVRLGRNGVE----EIKRHLFFKNDQ  337 (410)
T ss_dssp             SSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCC-------CHHHHHHHHHHSSCGGGCTTSSCHH----HHHTSGGGCCSS
T ss_pred             CCCCCCCCChhhHHHHHHhccccccCCCcccc-------cHHHHHHHHHHccChhhhCCCCCHH----HHhcCccccCCC
Confidence            999999999998888887643  334432111       225899999999988888  88887    999999999998


Q ss_pred             cc--cccCCCCCCCCCC
Q 010140          469 WA--LIRSIKPPEVPNN  483 (517)
Q Consensus       469 ~~--~~~~~~p~~~~~~  483 (517)
                      |+  .++.+.||++|..
T Consensus       338 w~~~~~~~~~~p~~p~~  354 (410)
T 3v8s_A          338 WAWETLRDTVAPVVPDL  354 (410)
T ss_dssp             CCSTTGGGSCCSCCCCC
T ss_pred             HHHHhhcccCCCCCCcC
Confidence            87  4578899998864

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.4e-54  Score=436.35  Aligned_cols=282  Identities=37%  Similarity=0.702  Sum_probs=232.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .+..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.++.++ +||||++++++|
T Consensus         5 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~   79 (345)
T 3a8x_A            5 PLGLQDFDLLRVIGRGSYAKVLLVRLKK-----TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF   79 (345)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             CCchhheEEEEEEEecCCeEEEEEEECC-----CCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE
Confidence            4567899999999999999999999986     6789999999876443345566777899999987 899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+.+|+||||++||+|..++...  ..+++..                            ++.|+.||+.||+|||++
T Consensus        80 ~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~aL~~LH~~  129 (345)
T 3a8x_A           80 QTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEH----------------------------ARFYSAEISLALNYLHER  129 (345)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999988764  2233322                            247889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.+|++||+|||+++.....                                              
T Consensus       130 ~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~----------------------------------------------  163 (345)
T 3a8x_A          130 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP----------------------------------------------  163 (345)
T ss_dssp             TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT----------------------------------------------
T ss_pred             CceecCCCHHHEEECCCCCEEEEeccccccccCC----------------------------------------------
Confidence            9999999999999999999999999998431100                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       164 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  211 (345)
T 3a8x_A          164 --------------------------------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  211 (345)
T ss_dssp             --------------------------------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             --------------------------------CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcC
Confidence                                            112235689999999999999999999999999999999999999997


Q ss_pred             C---------CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC--CChHHhhcCCCcCCC
Q 010140          399 G---------ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL--KGSVEIKRHEFFKGI  467 (517)
Q Consensus       399 ~---------~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~--~~~~ell~hp~f~~~  467 (517)
                      .         .........+......+|...         +.++++||.+||+.||.+||++.  ..+.|+++||||+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~  282 (345)
T 3a8x_A          212 IVGSSDNPDQNTEDYLFQVILEKQIRIPRSL---------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  282 (345)
T ss_dssp             TTTC-------CHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTC
T ss_pred             CcccccccccccHHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCC
Confidence            5         233445666777666655421         12489999999999999999983  235699999999999


Q ss_pred             Ccccc--cCCCCCCCCCC
Q 010140          468 NWALI--RSIKPPEVPNN  483 (517)
Q Consensus       468 ~~~~~--~~~~p~~~~~~  483 (517)
                      +|+.+  +.+.||+.|..
T Consensus       283 ~w~~~~~~~~~~p~~p~~  300 (345)
T 3a8x_A          283 DWDMMEQKQVVPPFKPNI  300 (345)
T ss_dssp             CHHHHHTTCSCCSCCCCC
T ss_pred             CHHHHHhCCCCCCcCCCC
Confidence            99977  55778887764

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=5.4e-54  Score=436.93  Aligned_cols=280  Identities=30%  Similarity=0.603  Sum_probs=233.3

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++|||||+++++
T Consensus         9 ~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~-----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~   83 (384)
T 4fr4_A            9 NEDVNFDHFEILRAIGKGSFGKVCIVQKND-----TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYS   83 (384)
T ss_dssp             CCCCCGGGEEEEEEEECCTTCCEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             CCCCChHHeEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            456778999999999999999999999887     678999999988766655667788889999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |.+.+.+|+|||||.||+|..++...  ..++...                            ++.|+.||+.||.|||+
T Consensus        84 ~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~----------------------------~~~~~~qi~~aL~~LH~  133 (384)
T 4fr4_A           84 FQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEET----------------------------VKLFICELVMALDYLQN  133 (384)
T ss_dssp             EECSSEEEEEECCCTTEEHHHHHHTT--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EEeCCEEEEEEecCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764  2233332                            24778999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+||||+.+|.+||+|||+++.+..                                              
T Consensus       134 ~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~----------------------------------------------  167 (384)
T 4fr4_A          134 QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR----------------------------------------------  167 (384)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECCT----------------------------------------------
T ss_pred             CCceeccCcHHHeEECCCCCEEEeccceeeeccC----------------------------------------------
Confidence            9999999999999999999999999999843321                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                       .......+||+.|+|||++.+   ..|+.++|||||||++|||++|.
T Consensus       168 ---------------------------------~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~  214 (384)
T 4fr4_A          168 ---------------------------------ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGR  214 (384)
T ss_dssp             ---------------------------------TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------------------CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCC
Confidence                                             112245679999999999974   45899999999999999999999


Q ss_pred             CCCCCC---ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          395 TPFKGE---NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       395 ~Pf~~~---~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      .||.+.   ...+....+......+|...         +.++.+||.+||+.||.+||++   +.++++||||++++|+.
T Consensus       215 ~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~s~---~~~l~~hp~f~~~~w~~  282 (384)
T 4fr4_A          215 RPYHIRSSTSSKEIVHTFETTVVTYPSAW---------SQEMVSLLKKLLEPNPDQRFSQ---LSDVQNFPYMNDINWDA  282 (384)
T ss_dssp             CSSCCCTTSCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHSCSSGGGSCCS---HHHHHTSGGGTTCCHHH
T ss_pred             CCCCCCCCccHHHHHHHHhhcccCCCCcC---------CHHHHHHHHHHhcCCHhHhccc---HHHHHcChhhhcCCHHH
Confidence            999854   33455555656555555322         1258999999999999999984   24999999999999997


Q ss_pred             c--cCCCCCCCCCC
Q 010140          472 I--RSIKPPEVPNN  483 (517)
Q Consensus       472 ~--~~~~p~~~~~~  483 (517)
                      +  +.+.||++|..
T Consensus       283 ~~~~~~~p~~~p~~  296 (384)
T 4fr4_A          283 VFQKRLIPGFIPNK  296 (384)
T ss_dssp             HHTTCSCCCCCCSC
T ss_pred             HHhCCCCCCCCCCC
Confidence            7  56788888874

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.3e-53  Score=447.61  Aligned_cols=287  Identities=33%  Similarity=0.588  Sum_probs=238.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||++++++|
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~  254 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMKA-----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF  254 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEECC-----CCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            45677999999999999999999999886     6789999999887665555567788899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+...+|+||||++||+|..++.........+.+.                          .++.|+.||+.||+|||++
T Consensus       255 ~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~--------------------------~~~~~~~qi~~aL~~LH~~  308 (543)
T 3c4z_A          255 ETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEP--------------------------RAIFYTAQIVSGLEHLHQR  308 (543)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHH--------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred             eeCCEEEEEEEeccCCCHHHHHHHhhcccccccHH--------------------------HHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999987654222222222                          2246789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+||||+.+|++||+|||+++.+...                                              
T Consensus       309 gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~----------------------------------------------  342 (543)
T 3c4z_A          309 NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAG----------------------------------------------  342 (543)
T ss_dssp             TEECCCCCGGGEEECTTSCEEECCCTTCEECCTT----------------------------------------------
T ss_pred             CCcccCCChHHEEEeCCCCEEEeecceeeeccCC----------------------------------------------
Confidence            9999999999999999999999999998543210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+||+.|+|||++.+..|+.++|||||||++|||++|.+||.
T Consensus       343 --------------------------------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~  390 (543)
T 3c4z_A          343 --------------------------------QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFR  390 (543)
T ss_dssp             --------------------------------CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------------------------CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCC
Confidence                                            011234579999999999999999999999999999999999999998


Q ss_pred             CCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCccccc
Q 010140          399 GEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       399 ~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~~  473 (517)
                      +..    ..+....+......+|...         +..+++||.+||+.||.+||++.+ .+.++++||||++++|..+.
T Consensus       391 ~~~~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l~  461 (543)
T 3c4z_A          391 ARGEKVENKELKQRVLEQAVTYPDKF---------SPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLE  461 (543)
T ss_dssp             CTTCCCCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHHH
T ss_pred             CCccchhHHHHHHHHhhcccCCCccc---------CHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHHH
Confidence            753    3566777777766655321         225899999999999999999753 46799999999999999874


Q ss_pred             --CCCCCCCCCC
Q 010140          474 --SIKPPEVPNN  483 (517)
Q Consensus       474 --~~~p~~~~~~  483 (517)
                        .+.||++|..
T Consensus       462 ~~~~~pp~~P~~  473 (543)
T 3c4z_A          462 AGMLTPPFVPDS  473 (543)
T ss_dssp             TTCSCCSCCCCS
T ss_pred             cCCCCCCCCCCc
Confidence              5788988864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=2.1e-53  Score=462.96  Aligned_cols=284  Identities=36%  Similarity=0.668  Sum_probs=241.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      .++.+++|++++.||+|+||.||+|+++.     +++.||||++.+...........+..|..+|..+ +||||++++++
T Consensus       336 ~~~~~~~f~~~~~LG~G~fG~V~~~~~~~-----~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~  410 (674)
T 3pfq_A          336 DRMKLTDFNFLMVLGKGSFGKVMLSERKG-----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC  410 (674)
T ss_dssp             ----CTTEEEEEESSBTTTBCEEEEEESS-----SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE
T ss_pred             ccccccceEEEEEEccCCCEEEEEEEECC-----CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence            34667899999999999999999999987     6789999999987665556677788899999987 79999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |++.+.+||||||++||+|..++...  ..+.+..+                            +.|+.||+.||+|||+
T Consensus       411 ~~~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~----------------------------~~~~~qi~~aL~~LH~  460 (674)
T 3pfq_A          411 FQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHA----------------------------VFYAAEIAIGLFFLQS  460 (674)
T ss_dssp             CBCSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEeCCEEEEEEeCcCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence            99999999999999999999998764  23333322                            4788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.+|++||+|||+++....                                              
T Consensus       461 ~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~----------------------------------------------  494 (674)
T 3pfq_A          461 KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW----------------------------------------------  494 (674)
T ss_dssp             TSEECCCCCSTTEEECSSSCEEECCCTTCEECCC----------------------------------------------
T ss_pred             CCeEeccCChhhEEEcCCCcEEEeecceeecccc----------------------------------------------
Confidence            9999999999999999999999999999843210                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      .......++||+.|+|||++.+..|+.++|||||||+||||++|.+||
T Consensus       495 --------------------------------~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf  542 (674)
T 3pfq_A          495 --------------------------------DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF  542 (674)
T ss_dssp             --------------------------------TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------------------------CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCC
Confidence                                            011234568999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RS  474 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~  474 (517)
                      .+.+..+++..|......+|...         ..++.+||.+||+.||++||++. ..++||++||||++++|+.+  +.
T Consensus       543 ~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~~~  613 (674)
T 3pfq_A          543 EGEDEDELFQSIMEHNVAYPKSM---------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKE  613 (674)
T ss_dssp             CCSSHHHHHHHHHSSCCCCCTTS---------CHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTTTC
T ss_pred             CCCCHHHHHHHHHhCCCCCCccC---------CHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHhCC
Confidence            99999999999999887776532         22589999999999999999983 34569999999999999987  56


Q ss_pred             CCCCCCCCCc
Q 010140          475 IKPPEVPNND  484 (517)
Q Consensus       475 ~~p~~~~~~~  484 (517)
                      +.||+.|...
T Consensus       614 ~~pp~~p~~~  623 (674)
T 3pfq_A          614 IQPPYKPKAS  623 (674)
T ss_dssp             SCCSCCCBCC
T ss_pred             CCCCCCCcCC
Confidence            7899888653

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=3.1e-53  Score=448.98  Aligned_cols=285  Identities=35%  Similarity=0.555  Sum_probs=236.4

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++|||||+++++
T Consensus       178 ~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~-----tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~  252 (576)
T 2acx_A          178 RQPVTKNTFRQYRVLGKGGFGEVCACQVRA-----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYA  252 (576)
T ss_dssp             TSCCCGGGEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hcCccccceEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEE
Confidence            455778999999999999999999999886     678999999988766555556677889999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      |.+.+.+|||||||+||+|..++.......+++..+                            +.|+.||+.||+|||+
T Consensus       253 ~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~----------------------------~~i~~qIl~aL~yLH~  304 (576)
T 2acx_A          253 YETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARA----------------------------VFYAAEICCGLEDLHR  304 (576)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999987654333443333                            3778999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.+|++||+|||+++.....                                             
T Consensus       305 ~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~---------------------------------------------  339 (576)
T 2acx_A          305 ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG---------------------------------------------  339 (576)
T ss_dssp             TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT---------------------------------------------
T ss_pred             CCEeccCCchheEEEeCCCCeEEEecccceecccC---------------------------------------------
Confidence            99999999999999999999999999998543210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                        ......+||+.|+|||++.+..|+.++|||||||++|||++|..||
T Consensus       340 ----------------------------------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF  385 (576)
T 2acx_A          340 ----------------------------------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF  385 (576)
T ss_dssp             ----------------------------------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ----------------------------------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence                                              0112347999999999999988999999999999999999999999


Q ss_pred             CCCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc
Q 010140          398 KGEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       398 ~~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~  472 (517)
                      .+..    ...+...+......++...         +.++++||.+||+.||.+||++.. .+.|+++||||++++|..+
T Consensus       386 ~~~~~~~~~~~i~~~i~~~~~~~p~~~---------s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l  456 (576)
T 2acx_A          386 QQRKKKIKREEVERLVKEVPEEYSERF---------SPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRL  456 (576)
T ss_dssp             SCSSSCCCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHH
T ss_pred             cccccchhHHHHHHHhhcccccCCccC---------CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHH
Confidence            8763    3455556666555554211         225899999999999999996532 3569999999999999987


Q ss_pred             c--CCCCCCCCCC
Q 010140          473 R--SIKPPEVPNN  483 (517)
Q Consensus       473 ~--~~~p~~~~~~  483 (517)
                      .  .+.||++|..
T Consensus       457 ~~~~~~pp~~p~~  469 (576)
T 2acx_A          457 GAGMLEPPFKPDP  469 (576)
T ss_dssp             HTTCSCCSCCCCC
T ss_pred             hcCCCCCCCCCCc
Confidence            4  5678888764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.3e-53  Score=442.72  Aligned_cols=283  Identities=40%  Similarity=0.714  Sum_probs=225.3

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..++..++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||++++++
T Consensus       142 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~  216 (446)
T 4ejn_A          142 KHRVTMNEFEYLKLLGKGTFGKVILVKEKA-----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYS  216 (446)
T ss_dssp             --CCCGGGEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEE
T ss_pred             ccCCChHHcEEeEEEeeCcCEEEEEEEEcC-----CCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEE
Confidence            345677899999999999999999999886     678999999987755445556677789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+.+|||||||+||+|..++....  .++...                            ++.++.||+.||+|||+
T Consensus       217 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~aL~~LH~  266 (446)
T 4ejn_A          217 FQTHDRLCFVMEYANGGELFFHLSRER--VFSEDR----------------------------ARFYGAEIVSALDYLHS  266 (446)
T ss_dssp             EEETTEEEEEECCCSSCBHHHHHHHHS--CCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EeeCCEEEEEEeeCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999886642  233222                            24778999999999998


Q ss_pred             -cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 -MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 -~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                       +|||||||||+||||+.++.+||+|||+++.....                                            
T Consensus       267 ~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~--------------------------------------------  302 (446)
T 4ejn_A          267 EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD--------------------------------------------  302 (446)
T ss_dssp             HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC---------------------------------------------
T ss_pred             cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC--------------------------------------------
Confidence             99999999999999999999999999998432110                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......+||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus       303 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~P  348 (446)
T 4ejn_A          303 ----------------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP  348 (446)
T ss_dssp             --------------------------------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCC
Confidence                                              1112346799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--c
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--R  473 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~  473 (517)
                      |.+.+....+..+......+|...         ..++.+||.+||+.||.+||+.. ..+.|+++||||++++|..+  +
T Consensus       349 f~~~~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~~~~  419 (446)
T 4ejn_A          349 FYNQDHEKLFELILMEEIRFPRTL---------GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEK  419 (446)
T ss_dssp             SCCSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTT
T ss_pred             CCCCCHHHHHHHHHhCCCCCCccC---------CHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCCHHHHhhC
Confidence            999999888888888777666432         12589999999999999999322 23459999999999999977  5


Q ss_pred             CCCCCCCCC
Q 010140          474 SIKPPEVPN  482 (517)
Q Consensus       474 ~~~p~~~~~  482 (517)
                      .+.||+.|.
T Consensus       420 ~~~pp~~p~  428 (446)
T 4ejn_A          420 KLSPPFKPQ  428 (446)
T ss_dssp             CSCCSCCCS
T ss_pred             cCCCCccCC
Confidence            566776654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.2e-52  Score=419.35  Aligned_cols=286  Identities=37%  Similarity=0.659  Sum_probs=225.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-HHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..+..++|++++.||+|+||.||+|++....  .+++.||||++.+.... .......+.+|+.+|+.++||||++++++
T Consensus        12 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~   89 (327)
T 3a62_A           12 EKIRPECFELLRVLGKGGYGKVFQVRKVTGA--NTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYA   89 (327)
T ss_dssp             -CCCGGGEEEEEEEEEETTEEEEEEEECSST--TTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEE
T ss_pred             CCCCHHHeEEEEEEEeCCCEEEEEEEEeccC--CCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEE
Confidence            3456789999999999999999999985321  26789999999865432 12334556779999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+.+|+|||||+||+|.+++....  .+...                            .++.++.||+.||.|||+
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~----------------------------~~~~~~~qi~~al~~lH~  139 (327)
T 3a62_A           90 FQTGGKLYLILEYLSGGELFMQLEREG--IFMED----------------------------TACFYLAEISMALGHLHQ  139 (327)
T ss_dssp             EECSSCEEEEEECCTTEEHHHHHHHHS--SCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCEEEEEEeCCCCCcHHHHHHhCC--CCCHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887542  22222                            224678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.+|.+||+|||+++.....                                             
T Consensus       140 ~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~---------------------------------------------  174 (327)
T 3a62_A          140 KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHD---------------------------------------------  174 (327)
T ss_dssp             TTCCCCCCCTTTEEECTTSCEEECCCSCC---------------------------------------------------
T ss_pred             CCEEcccCCHHHeEECCCCcEEEEeCCcccccccC---------------------------------------------
Confidence            99999999999999999999999999998432100                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       .......+||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       175 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf  221 (327)
T 3a62_A          175 ---------------------------------GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF  221 (327)
T ss_dssp             -------------------------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ---------------------------------CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCC
Confidence                                             01123457999999999999989999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RS  474 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~  474 (517)
                      .+.+..+.+..+......+|...         ..++.+||.+||..||.+||++. ..+.|+++||||++++|+.+  +.
T Consensus       222 ~~~~~~~~~~~i~~~~~~~p~~~---------~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~~~~~  292 (327)
T 3a62_A          222 TGENRKKTIDKILKCKLNLPPYL---------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARK  292 (327)
T ss_dssp             CCSSHHHHHHHHHHTCCCCCTTS---------CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHHHTTC
T ss_pred             CCCCHHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHHHhhcc
Confidence            99998888888888766655321         12589999999999999999764 25679999999999999976  45


Q ss_pred             CCCCCCCCC
Q 010140          475 IKPPEVPNN  483 (517)
Q Consensus       475 ~~p~~~~~~  483 (517)
                      +.||+.|..
T Consensus       293 ~~~p~~p~~  301 (327)
T 3a62_A          293 VEPPFKPLL  301 (327)
T ss_dssp             SCCSCCCC-
T ss_pred             CCCCCCCCc
Confidence            677776653

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.5e-52  Score=416.97  Aligned_cols=262  Identities=29%  Similarity=0.491  Sum_probs=221.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ....++|++++.||+|+||.||+|++..     +++.||||++.+.... .....++.+|+.+|+.++||||+++++++.
T Consensus        11 ~~~~~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~   84 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNFAKVKLARHIL-----TGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIE   84 (328)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CCccCCEEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEE
Confidence            3456899999999999999999999876     6789999999765322 234566778999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      ..+.+|+||||++||+|.+++...  ..++...+                            +.++.||+.||+|||++|
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~----------------------------~~~~~qi~~al~~lH~~~  134 (328)
T 3fe3_A           85 TEKTLYLIMEYASGGEVFDYLVAH--GRMKEKEA----------------------------RSKFRQIVSAVQYCHQKR  134 (328)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHHH--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             ECCEEEEEEECCCCCcHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998664  22333222                            467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.+..                                                
T Consensus       135 ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~------------------------------------------------  166 (328)
T 3fe3_A          135 IVHRDLKAENLLLDADMNIKIADFGFSNEFTV------------------------------------------------  166 (328)
T ss_dssp             CCCSCCCGGGEEECTTSCEEECSTTCCGGGSS------------------------------------------------
T ss_pred             EeccCCCHHHEEEcCCCCEEEeeccCceecCC------------------------------------------------
Confidence            99999999999999999999999999843221                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     .......+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.
T Consensus       167 -------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  215 (328)
T 3fe3_A          167 -------------------------------GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD  215 (328)
T ss_dssp             -------------------------------SCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             -------------------------------CCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCC
Confidence                                           011234579999999999998886 489999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      +.+..+....+..+....|...         +.++.+||.+||+.||.+|||+.    |+++||||+...+
T Consensus       216 ~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dP~~R~t~~----eil~h~~~~~~~~  273 (328)
T 3fe3_A          216 GQNLKELRERVLRGKYRIPFYM---------STDCENLLKRFLVLNPIKRGTLE----QIMKDRWINAGHE  273 (328)
T ss_dssp             CSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHCCSSTTTSCCHH----HHTTCTTTTTTCT
T ss_pred             CCCHHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHHCCCChhHCcCHH----HHhcCHhhcCCCc
Confidence            9999999999988877665432         22589999999999999999998    9999999987543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=9e-53  Score=414.62  Aligned_cols=255  Identities=23%  Similarity=0.309  Sum_probs=185.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      .+|.+.++||+|+||+||+|+++       ++.||||++......    ....+.|+..+.+++|||||++++++..++ 
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~-------g~~VAvK~l~~~~~~----~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~   71 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWR-------GEEVAVKIFSSREER----SWFREAEIYQTVMLRHENILGFIAADNKDNG   71 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEET-------TEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECS
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC-------CEEEEEEEECccchh----hHHHHHHHHHHhcCCCCCCCcEEEEEEecCC
Confidence            46899999999999999999874       478999999765322    122334677777899999999999997643 


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-  238 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-  238 (517)
                         .+|||||||+||+|.+++...   .++....                            ..++.|++.||+|||++ 
T Consensus        72 ~~~~~~lV~Ey~~~gsL~~~l~~~---~l~~~~~----------------------------~~i~~~ia~gl~ylH~~~  120 (303)
T 3hmm_A           72 TWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGM----------------------------IKLALSTASGLAHLHMEI  120 (303)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHHC---CBCHHHH----------------------------HHHHHHHHHHHHHHHCCB
T ss_pred             CceEEEEEecCCCCCcHHHHHHhC---CCCHHHH----------------------------HHHHHHHHHHHHHHHHhh
Confidence               689999999999999999764   2332222                            36789999999999987 


Q ss_pred             -------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          239 -------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       239 -------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                             +||||||||+||||+.++.+||+|||+|+........                                    
T Consensus       121 ~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~------------------------------------  164 (303)
T 3hmm_A          121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT------------------------------------  164 (303)
T ss_dssp             CSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTE------------------------------------
T ss_pred             hhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCc------------------------------------
Confidence                   9999999999999999999999999998543321100                                    


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC------CCCccchHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ------GHGSAVDWWTLGV  385 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~------~~~~~~DiWSlGv  385 (517)
                                                            ........+||+.|||||++.+.      .|+.++|||||||
T Consensus       165 --------------------------------------~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gv  206 (303)
T 3hmm_A          165 --------------------------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL  206 (303)
T ss_dssp             --------------------------------------ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHH
T ss_pred             --------------------------------------eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHH
Confidence                                                  01112345799999999999865      2577999999999


Q ss_pred             HHHHHhhCCCCCCCCC--------------h-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccC
Q 010140          386 FLYEMLYGTTPFKGEN--------------N-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG  450 (517)
Q Consensus       386 il~elltG~~Pf~~~~--------------~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t  450 (517)
                      +||||+||.+||....              . ......+...... |..... ....+....+.+||.+||+.||++|||
T Consensus       207 vl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r-p~~p~~-~~~~~~~~~l~~li~~cl~~dP~~RPt  284 (303)
T 3hmm_A          207 VFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLR-PNIPNR-WQSCEALRVMAKIMRECWYANGAARLT  284 (303)
T ss_dssp             HHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC-CCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCC
T ss_pred             HHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCC-CCCCcc-ccchHHHHHHHHHHHHHcccCHhHCcC
Confidence            9999999977654211              1 2233333333221 211111 111123346889999999999999999


Q ss_pred             CCCChHHhhc
Q 010140          451 SLKGSVEIKR  460 (517)
Q Consensus       451 ~~~~~~ell~  460 (517)
                      +.    |+++
T Consensus       285 ~~----ei~~  290 (303)
T 3hmm_A          285 AL----RIKK  290 (303)
T ss_dssp             HH----HHHH
T ss_pred             HH----HHHH
Confidence            97    5554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.3e-52  Score=424.07  Aligned_cols=267  Identities=29%  Similarity=0.456  Sum_probs=222.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||+|++.+......   .....+.+|+.+|+.++||||++++++|.
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~-----~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~   85 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKS-----TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYE   85 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECC-----CCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            4689999999999999999999886     678999999976432110   12345677999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +...+|+|||||+||+|.+++...  ..+++..+                            +.++.||+.||.|||++|
T Consensus        86 ~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~----------------------------~~i~~qi~~aL~~LH~~g  135 (361)
T 2yab_A           86 NRTDVVLILELVSGGELFDFLAQK--ESLSEEEA----------------------------TSFIKQILDGVNYLHTKK  135 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTC--SCCBHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998653  23333322                            377899999999999999


Q ss_pred             ceeccCCCCceEEccCC----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDG----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |+||||||+|||++.++    .+||+|||+++....                                            
T Consensus       136 ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~--------------------------------------------  171 (361)
T 2yab_A          136 IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED--------------------------------------------  171 (361)
T ss_dssp             EECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT--------------------------------------------
T ss_pred             cccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC--------------------------------------------
Confidence            99999999999998777    799999999854321                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         .......+||+.|+|||++.+..++.++|||||||++|+|++|.+
T Consensus       172 -----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~  216 (361)
T 2yab_A          172 -----------------------------------GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  216 (361)
T ss_dssp             -----------------------------------TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC
T ss_pred             -----------------------------------CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCC
Confidence                                               011234579999999999999899999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ||.+.+..+.+..+......++.....     ..+..+++||.+||..||.+|||+.    |+++||||++++|...
T Consensus       217 Pf~~~~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dP~~R~t~~----e~l~hp~~~~~~~~~~  284 (361)
T 2yab_A          217 PFLGDTKQETLANITAVSYDFDEEFFS-----QTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDTQQA  284 (361)
T ss_dssp             SSCCSSHHHHHHHHHTTCCCCCHHHHT-----TSCHHHHHHHHHHSCSSTTTSCCHH----HHHTSTTTSCSSHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCchhcc-----CCCHHHHHHHHHHCCCChhHCcCHH----HHhcCcCcCCCchhhh
Confidence            999999999999998876655432111     1223589999999999999999998    9999999999998644

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=4.7e-51  Score=402.33  Aligned_cols=259  Identities=24%  Similarity=0.368  Sum_probs=212.6

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++.....   ...+.+.+|+.+++.++||||+++++++..+
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   89 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVA-----TGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVG   89 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTT-----TCCEEEEEEEEGGGC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECC-----CCcEEEEEEeecccc---cHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC
Confidence            45789999999999999999999876     678999999865432   2234566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||+||+|.+++...   .++...                            ++.++.||+.||+|||++||+
T Consensus        90 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~  138 (297)
T 3fxz_A           90 DELWVVMEYLAGGSLTDVVTET---CMDEGQ----------------------------IAAVCRECLQALEFLHSNQVI  138 (297)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHS---CCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEECCCCCCHHHHHhhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCce
Confidence            9999999999999999998764   222222                            246789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++......                                                 
T Consensus       139 H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  169 (297)
T 3fxz_A          139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPE-------------------------------------------------  169 (297)
T ss_dssp             CCCCSGGGEEECTTCCEEECCCTTCEECCST-------------------------------------------------
T ss_pred             eCCCCHHHEEECCCCCEEEeeCCCceecCCc-------------------------------------------------
Confidence            9999999999999999999999998443210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+
T Consensus       170 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  220 (297)
T 3fxz_A          170 -----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN  220 (297)
T ss_dssp             -----------------------------TCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -----------------------------ccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         011234579999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .......+............      .....+.+||.+||+.||++||++.    |+++||||+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rps~~----ell~h~~~~~~  276 (297)
T 3fxz_A          221 PLRALYLIATNGTPELQNPE------KLSAIFRDFLNRCLEMDVEKRGSAK----ELLQHQFLKIA  276 (297)
T ss_dssp             HHHHHHHHHHHCSCCCSCGG------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTCGGGGGC
T ss_pred             HHHHHHHHHhCCCCCCCCcc------ccCHHHHHHHHHHccCChhHCcCHH----HHhhChhhccc
Confidence            87766666543322111111      1223589999999999999999998    99999999854

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-51  Score=411.09  Aligned_cols=259  Identities=31%  Similarity=0.471  Sum_probs=212.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|++..     +++.||||++.+..........++.+|+.+|+.++||||+++++++..
T Consensus         6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~   80 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFGKVKLATHYK-----TQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT   80 (336)
T ss_dssp             SEETTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe
Confidence            346899999999999999999999876     678999999987765544455678889999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+ +|+|.+++...  ..+++..                            ++.++.||+.||.|||++||
T Consensus        81 ~~~~~lv~E~~-~g~l~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~aL~~LH~~gi  129 (336)
T 3h4j_B           81 PTDIVMVIEYA-GGELFDYIVEK--KRMTEDE----------------------------GRRFFQQIICAIEYCHRHKI  129 (336)
T ss_dssp             SSEEEEEECCC-CEEHHHHHHHH--CSCCHHH----------------------------HHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEEECC-CCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence            99999999999 78999988654  2233332                            24778999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++.....                                                 
T Consensus       130 vH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~-------------------------------------------------  160 (336)
T 3h4j_B          130 VHRDLKPENLLLDDNLNVKIADFGLSNIMTD-------------------------------------------------  160 (336)
T ss_dssp             CCCCCSTTTEEECTTCCEEECCSSCTBTTTT-------------------------------------------------
T ss_pred             EecCCchhhEEEcCCCCEEEEEeccceeccC-------------------------------------------------
Confidence            9999999999999999999999999843221                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                    .......+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+
T Consensus       161 ------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~  210 (336)
T 3h4j_B          161 ------------------------------GNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD  210 (336)
T ss_dssp             ------------------------------SBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBC
T ss_pred             ------------------------------CcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCC
Confidence                                          011234579999999999998876 7899999999999999999999988


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .........+.......|..         .+.++.+||.+||+.||.+|||+.    |+++||||+..
T Consensus       211 ~~~~~~~~~i~~~~~~~p~~---------~s~~~~~li~~~L~~dP~~Rpt~~----eil~hp~~~~~  265 (336)
T 3h4j_B          211 EFIPNLFKKVNSCVYVMPDF---------LSPGAQSLIRRMIVADPMQRITIQ----EIRRDPWFNVN  265 (336)
T ss_dssp             SSSTTCBCCCCSSCCCCCTT---------SCHHHHHHHHTTSCSSGGGSCCHH----HHTTCHHHHTT
T ss_pred             ccHHHHHHHHHcCCCCCccc---------CCHHHHHHHHHHcCCChhHCcCHH----HHHhChhhccC
Confidence            76544443333333333321         123589999999999999999998    99999999853

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.5e-50  Score=419.73  Aligned_cols=260  Identities=28%  Similarity=0.474  Sum_probs=217.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|.++.     +++.||+|++...... ......+.+|+.+|+.++||||+++++++.+.+.
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~-----~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   84 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVL-----AGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGH   84 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETT-----TTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSE
T ss_pred             CCeEEEEEeccCCCeEEEEEEECC-----CCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCE
Confidence            679999999999999999999886     6789999998754332 2334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+|||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||++||+||
T Consensus        85 ~~lv~E~~~gg~L~~~i~~~--~~~~e~~~----------------------------~~i~~qil~aL~~lH~~givHr  134 (444)
T 3soa_A           85 HYLIFDLVTGGELFEDIVAR--EYYSEADA----------------------------SHCIQQILEAVLHCHQMGVVHR  134 (444)
T ss_dssp             EEEEECCCBCCBHHHHHHHC--SCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCBCC
T ss_pred             EEEEEEeCCCCCHHHHHHHc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcccc
Confidence            99999999999999988764  22333322                            3678999999999999999999


Q ss_pred             cCCCCceEEc---cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLVR---EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl~---~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||++   .++.+||+|||+++.....                                                
T Consensus       135 DlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~------------------------------------------------  166 (444)
T 3soa_A          135 NLKPENLLLASKLKGAAVKLADFGLAIEVEGE------------------------------------------------  166 (444)
T ss_dssp             CCSSTTEEESBSSTTCCEEECCCSSCBCCCTT------------------------------------------------
T ss_pred             CCCHHHEEEeccCCCCcEEEccCceeEEecCC------------------------------------------------
Confidence            9999999998   4678999999998443210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .......+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.
T Consensus       167 ------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          167 ------------------------------QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             ------------------------------CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ------------------------------CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence                                          01123457999999999999989999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +..+.+..+..+...++......     .+.++.+||.+||+.||.+|||+.    |+|+||||+.
T Consensus       217 ~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dP~~Rpta~----e~L~hp~~~~  273 (444)
T 3soa_A          217 DQHRLYQQIKAGAYDFPSPEWDT-----VTPEAKDLINKMLTINPSKRITAA----EALKHPWISH  273 (444)
T ss_dssp             SHHHHHHHHHHTCCCCCTTTTTT-----SCHHHHHHHHHHSCSSTTTSCCHH----HHHHSCTTHH
T ss_pred             cHHHHHHHHHhCCCCCCcccccc-----CCHHHHHHHHHHcCCChhHCCCHH----HHhcCccccC
Confidence            99999999988877666543322     123589999999999999999998    9999999974

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.2e-50  Score=402.06  Aligned_cols=272  Identities=25%  Similarity=0.341  Sum_probs=208.5

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      +...++|++++.||+|+||+||+|++.      .++.||+|++...... ......+.+|+.+|+.++||||+++++++.
T Consensus        17 q~l~~~y~~~~~lG~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~   89 (311)
T 3niz_A           17 QGLMEKYQKLEKVGEGTYGVVYKAKDS------QGRIVALKRIRLDAED-EGIPSTAIREISLLKELHHPNIVSLIDVIH   89 (311)
T ss_dssp             ECSSCEEEEEEEEEECSSCEEEEEEET------TSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cchHhhhHhhhhccCCCCeEEEEEEEC------CCCEEEEEEEeccccc-chhhHHHHHHHHHHHHcCCCCEeeeeeEEc
Confidence            345689999999999999999999985      3678999999765322 233456778999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +++.+|+|||||+ |+|.+++.... ..++...                            ++.++.||+.||+|||++|
T Consensus        90 ~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~LH~~~  139 (311)
T 3niz_A           90 SERCLTLVFEFME-KDLKKVLDENK-TGLQDSQ----------------------------IKIYLYQLLRGVAHCHQHR  139 (311)
T ss_dssp             CSSCEEEEEECCS-EEHHHHHHTCT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEcCCC-CCHHHHHHhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCC
Confidence            9999999999996 58888776542 2233222                            2467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++.....                                               
T Consensus       140 ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-----------------------------------------------  172 (311)
T 3niz_A          140 ILHRDLKPQNLLINSDGALKLADFGLARAFGIP-----------------------------------------------  172 (311)
T ss_dssp             EECCCCCGGGEEECTTCCEEECCCTTCEETTSC-----------------------------------------------
T ss_pred             cccCCCchHhEEECCCCCEEEccCcCceecCCC-----------------------------------------------
Confidence            999999999999999999999999998543210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     .......+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.
T Consensus       173 -------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  221 (311)
T 3niz_A          173 -------------------------------VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFP  221 (311)
T ss_dssp             -------------------------------CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             -------------------------------cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence                                           011223468999999999987 458999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCC---Cch-------------h-----HHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          399 GENNEKTLINILKKPLTFPRIGVS---SSK-------------E-----FEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~---~~~-------------~-----~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      +....+.+..+.......+.....   ...             .     .....++.+||.+||+.||++|||+.    |
T Consensus       222 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----e  297 (311)
T 3niz_A          222 GVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISAR----D  297 (311)
T ss_dssp             CSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHH----H
T ss_pred             CCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHH----H
Confidence            887766665554311110000000   000             0     01223688999999999999999998    9


Q ss_pred             hhcCCCcCCCCcc
Q 010140          458 IKRHEFFKGINWA  470 (517)
Q Consensus       458 ll~hp~f~~~~~~  470 (517)
                      +++||||++++++
T Consensus       298 ll~hp~f~~~~~~  310 (311)
T 3niz_A          298 AMNHPYFKDLDPQ  310 (311)
T ss_dssp             HHTSGGGTTSCTT
T ss_pred             HhcCcccccCCcc
Confidence            9999999998864

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.3e-51  Score=405.97  Aligned_cols=266  Identities=28%  Similarity=0.447  Sum_probs=218.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||+|++........   .....+.+|+.+|+.++||||+++++++.+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   85 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKS-----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN   85 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETT-----TCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             cceEeceEEeeCCCeEEEEEEECC-----CCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            579999999999999999999886     678999999875422100   123556779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+|+|||||+||+|.+++...  ..++...                            ++.++.||+.||.|||++||
T Consensus        86 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~al~~lH~~~i  135 (326)
T 2y0a_A           86 KTDVILILELVAGGELFDFLAEK--ESLTEEE----------------------------ATEFLKQILNGVYYLHSLQI  135 (326)
T ss_dssp             SSEEEEEEECCCSCBHHHHHTTS--SCCBHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhc--CCcCHHH----------------------------HHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999988653  2233322                            24778999999999999999


Q ss_pred             eeccCCCCceEEccCC----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       241 iHrDLKp~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +||||||+|||++.++    .+||+|||+++.....                                            
T Consensus       136 vH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~--------------------------------------------  171 (326)
T 2y0a_A          136 AHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG--------------------------------------------  171 (326)
T ss_dssp             ECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTT--------------------------------------------
T ss_pred             EcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCC--------------------------------------------
Confidence            9999999999999887    8999999998543210                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         ......+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       172 -----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p  216 (326)
T 2y0a_A          172 -----------------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  216 (326)
T ss_dssp             -----------------------------------SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred             -----------------------------------CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCC
Confidence                                               011234699999999999998999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      |.+....+.+..+......++.....     ..+..+.+||.+||+.||.+|||+.    |+++||||+..+|...
T Consensus       217 f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dP~~Rpt~~----e~l~hp~~~~~~~~~~  283 (326)
T 2y0a_A          217 FLGDTKQETLANVSAVNYEFEDEYFS-----NTSALAKDFIRRLLVKDPKKRMTIQ----DSLQHPWIKPKDTQQA  283 (326)
T ss_dssp             SCCSSHHHHHHHHHHTCCCCCHHHHT-----TSCHHHHHHHHHHSCSSGGGSCCHH----HHHHSTTTSCCSHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCcCccccc-----cCCHHHHHHHHHHccCChhhCCCHH----HHhcCCCccCCcchhh
Confidence            99998888888887765544321111     1223589999999999999999998    9999999999988644

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.1e-51  Score=406.48  Aligned_cols=259  Identities=25%  Similarity=0.398  Sum_probs=216.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||+|++....    .....+.+|+.+|+.++||||+++++++.+.+
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~-----~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~   74 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETS-----SKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESME   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT
T ss_pred             hhceEeeeEEecCCCeEEEEEEECC-----CCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC
Confidence            4789999999999999999999886     67899999987543    22345667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+|||||+||+|.+++.... ..+++..                            +..++.||+.||+|||++||+|
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~al~~lH~~givH  125 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTSA-FELNERE----------------------------IVSYVHQVCEALQFLHSHNIGH  125 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEeCCCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCCCc
Confidence            9999999999999999886532 1233222                            2367899999999999999999


Q ss_pred             ccCCCCceEEcc--CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLVRE--DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl~~--~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+|||++.  ++.+||+|||+++.+...                                                
T Consensus       126 ~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~------------------------------------------------  157 (321)
T 1tki_A          126 FDIRPENIIYQTRRSSTIKIIEFGQARQLKPG------------------------------------------------  157 (321)
T ss_dssp             CCCCGGGEEESSSSCCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             CCCCHHHEEEccCCCCCEEEEECCCCeECCCC------------------------------------------------
Confidence            999999999987  789999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       158 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          158 -------------------------------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             -------------------------------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             -------------------------------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence                                           0112346999999999999988999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +..+.+..+......++.....     ..+.++.+||.+||..||.+|||+.    |+++||||+..
T Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dp~~Rpt~~----e~l~hp~~~~~  264 (321)
T 1tki_A          207 TNQQIIENIMNAEYTFDEEAFK-----EISIEAMDFVDRLLVKERKSRMTAS----EALQHPWLKQK  264 (321)
T ss_dssp             SHHHHHHHHHHTCCCCCHHHHT-----TSCHHHHHHHHTTSCSSGGGSCCHH----HHHHSHHHHSC
T ss_pred             CHHHHHHHHHcCCCCCChhhhc-----cCCHHHHHHHHHHcCCChhHCcCHH----HHhcChhhccC
Confidence            9999888888876655432111     2234689999999999999999998    99999999864

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.1e-50  Score=410.71  Aligned_cols=259  Identities=26%  Similarity=0.467  Sum_probs=216.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|.++.     +++.||+|++...... ......+.+|+.+|+.++||||+++++++.+.+.
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~  102 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHKT-----TGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESF  102 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cCeEEeeEEecCCCeEEEEEEECC-----CCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE
Confidence            579999999999999999999886     6789999999754322 2334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+|||||+||+|.+++...  ..+++..                            ++.++.||+.||+|||++||+||
T Consensus       103 ~~lv~e~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~al~~lH~~~ivH~  152 (362)
T 2bdw_A          103 HYLVFDLVTGGELFEDIVAR--EFYSEAD----------------------------ASHCIQQILESIAYCHSNGIVHR  152 (362)
T ss_dssp             EEEEECCCCSCBHHHHHTTC--SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCBCC
T ss_pred             EEEEEecCCCCCHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEec
Confidence            99999999999999888653  2232222                            24678999999999999999999


Q ss_pred             cCCCCceEEccC---CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLVRED---GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl~~~---~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||++.+   +.+||+|||++......                                                
T Consensus       153 Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~------------------------------------------------  184 (362)
T 2bdw_A          153 NLKPENLLLASKAKGAAVKLADFGLAIEVNDS------------------------------------------------  184 (362)
T ss_dssp             CCSGGGEEESCSSTTCCEEECCCTTCBCCTTC------------------------------------------------
T ss_pred             cCchHHEEEecCCCCCCEEEeecCcceEecCC------------------------------------------------
Confidence            999999999865   45999999998432210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||++.+..++.++|||||||++|+|++|.+||.+.
T Consensus       185 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          185 -------------------------------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             -------------------------------CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                                           0123457999999999999989999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +..+.+..+..+...++.....     ..+.++.+||.+||+.||++||++.    |+|+||||..
T Consensus       234 ~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dP~~R~t~~----e~l~hp~~~~  290 (362)
T 2bdw_A          234 DQHRLYAQIKAGAYDYPSPEWD-----TVTPEAKSLIDSMLTVNPKKRITAD----QALKVPWICN  290 (362)
T ss_dssp             SHHHHHHHHHHTCCCCCTTGGG-----GSCHHHHHHHHHHSCSSGGGSCCHH----HHTTSHHHHT
T ss_pred             CHHHHHHHHHhCCCCCCccccc-----CCCHHHHHHHHHHcCCChhhCcCHH----HHhcCcccCC
Confidence            9888888888877666543221     2234689999999999999999998    9999999975

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.6e-51  Score=410.87  Aligned_cols=267  Identities=27%  Similarity=0.421  Sum_probs=212.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH--HHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK--KLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++.........  ....+.+|+.+++.++||||+++++++.++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~   98 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRE-----TGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD   98 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cceEEeeEEeeCCCEEEEEEEECC-----CCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            579999999999999999999886     6789999999765433111  245677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||+||+|.+++...........+                          ..++.++.||+.||+|||++||+
T Consensus        99 ~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~--------------------------~~~~~i~~qi~~al~~lH~~~iv  152 (351)
T 3c0i_A           99 GMLYMVFEFMDGADLCFEIVKRADAGFVYSE--------------------------AVASHYMRQILEALRYCHDNNII  152 (351)
T ss_dssp             TEEEEEEECCSSCBHHHHHHHHHHTTCCCCH--------------------------HHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEeCCCCCCHHHHHHHhcccCCCCCH--------------------------HHHHHHHHHHHHHHHHHHHCCce
Confidence            9999999999999998877653211111111                          12246789999999999999999


Q ss_pred             eccCCCCceEEccCCc---EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGH---IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl~~~~~---vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||++.++.   +||+|||+++.....                                              
T Consensus       153 HrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~----------------------------------------------  186 (351)
T 3c0i_A          153 HRDVKPHCVLLASKENSAPVKLGGFGVAIQLGES----------------------------------------------  186 (351)
T ss_dssp             CSCCSGGGEEECSSSTTCCEEECCCTTCEECCTT----------------------------------------------
T ss_pred             eccCChHHeEEecCCCCCcEEEecCcceeEecCC----------------------------------------------
Confidence            9999999999986654   999999998543210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       187 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  234 (351)
T 3c0i_A          187 --------------------------------GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFY  234 (351)
T ss_dssp             --------------------------------SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------------------------CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCC
Confidence                                            001223479999999999999999999999999999999999999998


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      +. ..+.+..+......++.....     ..+.++.+||.+||+.||++||++.    |+++||||+..++
T Consensus       235 ~~-~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dP~~R~s~~----e~l~hp~~~~~~~  295 (351)
T 3c0i_A          235 GT-KERLFEGIIKGKYKMNPRQWS-----HISESAKDLVRRMLMLDPAERITVY----EALNHPWLKERDR  295 (351)
T ss_dssp             SS-HHHHHHHHHHTCCCCCHHHHT-----TSCHHHHHHHHHHTCSSTTTSCCHH----HHHTSHHHHTHHH
T ss_pred             Cc-HHHHHHHHHcCCCCCCccccc-----cCCHHHHHHHHHHCCCChhHCcCHH----HHhcChhhcCCcc
Confidence            75 455666666665443321111     1234689999999999999999998    9999999997665

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.7e-50  Score=420.51  Aligned_cols=263  Identities=30%  Similarity=0.465  Sum_probs=223.9

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..+.+..++|.+++.||+|+||.||+|++..     +++.||||++.+...........+.+|+.+|+.++||||+++++
T Consensus         9 ~~~~~~~~~Y~l~~~LG~G~fg~V~~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~   83 (476)
T 2y94_A            9 HDGRVKIGHYILGDTLGVGTFGKVKVGKHEL-----TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQ   83 (476)
T ss_dssp             CCSCCEETTEEEEEEEECCSSSCEEEEEETT-----TCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cCCCceecCEEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence            4566778999999999999999999999886     67899999998776554445667888999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++...+.+|+|||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||
T Consensus        84 ~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~----------------------------~~i~~qi~~aL~~LH  133 (476)
T 2y94_A           84 VISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKES----------------------------RRLFQQILSGVDYCH  133 (476)
T ss_dssp             EEECSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            999999999999999999999988653  23333322                            467899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       134 ~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~---------------------------------------------  168 (476)
T 2y94_A          134 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD---------------------------------------------  168 (476)
T ss_dssp             TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCT---------------------------------------------
T ss_pred             HCCCCcccccHHHEEEecCCCeEEEeccchhhccc---------------------------------------------
Confidence            99999999999999999999999999999843221                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~  395 (517)
                                                        .......+||+.|+|||++.+..+ +.++|||||||++|+|++|..
T Consensus       169 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~  214 (476)
T 2y94_A          169 ----------------------------------GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTL  214 (476)
T ss_dssp             ----------------------------------TCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------------------------cccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCC
Confidence                                              011234579999999999998875 789999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||.+.+....+.++..+....|...         ..++.+||.+||+.||.+|||+.    |+++||||+.
T Consensus       215 Pf~~~~~~~~~~~i~~~~~~~p~~~---------s~~~~~Li~~~L~~dP~~Rpt~~----eil~hp~~~~  272 (476)
T 2y94_A          215 PFDDDHVPTLFKKICDGIFYTPQYL---------NPSVISLLKHMLQVDPMKRATIK----DIREHEWFKQ  272 (476)
T ss_dssp             SSCCSSSHHHHHHHHTTCCCCCTTC---------CHHHHHHHHHHTCSSTTTSCCHH----HHHTCHHHHT
T ss_pred             CCCCCCHHHHHHHHhcCCcCCCccC---------CHHHHHHHHHHcCCCchhCcCHH----HHHhCHHhhh
Confidence            9999988888888888766554321         12489999999999999999998    9999999985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=3.8e-50  Score=391.94  Aligned_cols=261  Identities=33%  Similarity=0.560  Sum_probs=220.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+.+++|++++.||+|+||.||+|++..     +++.||+|++.............+.+|+.+++.++||||+++++++
T Consensus         4 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   78 (279)
T 3fdn_A            4 RQWALEDFEIGRPLGKGKFGNVYLAREKQ-----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF   78 (279)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ceeecccEEEeeEEecCCCeEEEEEEEcc-----CCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheE
Confidence            35677999999999999999999999886     6788999999877655555567788899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++|+|.+++....  .++...                            ++.++.||+.||+|||++
T Consensus        79 ~~~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~LH~~  128 (279)
T 3fdn_A           79 HDATRVYLILEYAPLGTVYRELQKLS--KFDEQR----------------------------TATYITELANALSYCHSK  128 (279)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHHHS--SCCHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             ecCCEEEEEEecCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999887642  222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.....                                               
T Consensus       129 ~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~-----------------------------------------------  161 (279)
T 3fdn_A          129 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS-----------------------------------------------  161 (279)
T ss_dssp             TCEECCCCGGGEEECTTSCEEECSCCEESCC-------------------------------------------------
T ss_pred             CEecccCChHhEEEcCCCCEEEEeccccccCCc-----------------------------------------------
Confidence            999999999999999999999999998732210                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                       .......||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       162 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  208 (279)
T 3fdn_A          162 ---------------------------------SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE  208 (279)
T ss_dssp             ---------------------------------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------------------------ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCC
Confidence                                             01123468999999999999989999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +.+..+....+......+|...         ...+.+||.+||+.||.+||++.    |+++||||++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~----e~l~h~~~~~~  264 (279)
T 3fdn_A          209 ANTYQETYKRISRVEFTFPDFV---------TEGARDLISRLLKHNPSQRPMLR----EVLEHPWITAN  264 (279)
T ss_dssp             CSSHHHHHHHHHHTCCCCCTTS---------CHHHHHHHHHHCCSSGGGSCCHH----HHHHCHHHHHH
T ss_pred             CCcHHHHHHHHHhCCCCCCCcC---------CHHHHHHHHHHhccChhhCCCHH----HHhhCccccCC
Confidence            9988888888877666655432         12489999999999999999998    99999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=2.2e-50  Score=412.81  Aligned_cols=282  Identities=21%  Similarity=0.296  Sum_probs=214.2

Q ss_pred             cCCCCceEEeeeecc--ceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           81 VGLDHFRLLRRLGSG--DIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G--~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ...++|++++.||+|  +||.||+|+++.     +++.||||++...... ......+.+|+.+|+.++|||||+++++|
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~   95 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLMTVNLARYKP-----TGEYVTVRRINLEACS-NEMVTFLQGELHVSKLFNHPNIVPYRATF   95 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTEEEEEEEETT-----TCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CCCCcEEEEecccCCcCCceEEEEEEEcC-----CCCEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCCCcEeEEE
Confidence            345789999999999  999999999986     6789999999765322 23456777899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++.+|+|||||++|+|.+++.......+.+...                            +.++.||+.||+|||++
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~~qi~~~l~~LH~~  147 (389)
T 3gni_B           96 IADNELWVVTSFMAYGSAKDLICTHFMDGMNELAI----------------------------AYILQGVLKALDYIHHM  147 (389)
T ss_dssp             EETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHH----------------------------HHHHHHHHHHHHHHHHT
T ss_pred             EECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHH----------------------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998764444443332                            37789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.........                                           
T Consensus       148 ~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~-------------------------------------------  184 (389)
T 3gni_B          148 GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR-------------------------------------------  184 (389)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEE-------------------------------------------
T ss_pred             CeecCCCCHHHEEEcCCCCEEEcccccceeecccccc-------------------------------------------
Confidence            9999999999999999999999999987433211000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHHHHHhhCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                  ...........+||+.|+|||++.+  ..++.++|||||||++|||++|+.|
T Consensus       185 ----------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p  236 (389)
T 3gni_B          185 ----------------------------QRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP  236 (389)
T ss_dssp             ----------------------------CSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             ----------------------------ccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence                                        0000111233479999999999988  5689999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCC-----------------------------------CC--CCchhHHhhhhHHHHHHH
Q 010140          397 FKGENNEKTLINILKKPLTFPRI-----------------------------------GV--SSSKEFEEVVKLQDLISK  439 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~-----------------------------------~~--~~~~~~~~~~~l~dLi~~  439 (517)
                      |.+.+....+..+..........                                   ..  ..........++.+||.+
T Consensus       237 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  316 (389)
T 3gni_B          237 FKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQ  316 (389)
T ss_dssp             TTTCCSTTHHHHC--------------------------------------------------------CCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHH
Confidence            99877665555444322110000                                   00  000001123468999999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      ||+.||++|||+.    |+|+||||+.+.|..
T Consensus       317 ~L~~dP~~Rpta~----ell~hp~f~~~~~~~  344 (389)
T 3gni_B          317 CLQRNPDARPSAS----TLLNHSFFKQIKRRA  344 (389)
T ss_dssp             HTCSCTTTSCCHH----HHTTSGGGGGC---C
T ss_pred             HhhcCcccCCCHH----HHhcCHHHHHHhhcc
Confidence            9999999999998    999999999988754

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-49  Score=406.11  Aligned_cols=263  Identities=28%  Similarity=0.432  Sum_probs=216.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|.++.     +++.||+|++......   ....+.+|+.+|+.++||||+++++++.+..
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~-----~~~~~a~K~~~~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~  121 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKA-----TGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKY  121 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSS
T ss_pred             ccceEEEEEEecCCCEEEEEEEECC-----CCCEEEEEEecccchh---hHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC
Confidence            4789999999999999999999886     6789999998754322   2235667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+|||||+||+|.+++.... ..+++..                            ++.++.||+.||+|||++||+|
T Consensus       122 ~~~lv~E~~~gg~L~~~l~~~~-~~l~~~~----------------------------~~~i~~qi~~aL~~LH~~givH  172 (387)
T 1kob_A          122 EMVLILEFLSGGELFDRIAAED-YKMSEAE----------------------------VINYMRQACEGLKHMHEHSIVH  172 (387)
T ss_dssp             EEEEEEECCCCCBHHHHTTCTT-CCBCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHhhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeee
Confidence            9999999999999999876532 1233222                            2377899999999999999999


Q ss_pred             ccCCCCceEEcc--CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLVRE--DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl~~--~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+|||++.  ++.+||+|||+++.....                                                
T Consensus       173 rDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~------------------------------------------------  204 (387)
T 1kob_A          173 LDIKPENIMCETKKASSVKIIDFGLATKLNPD------------------------------------------------  204 (387)
T ss_dssp             CCCCGGGEEESSTTCCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             cccchHHeEEecCCCCceEEEecccceecCCC------------------------------------------------
Confidence            999999999974  578999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       205 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          205 -------------------------------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             -------------------------------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             -------------------------------cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence                                           0112336999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +..+.+..+......++......     .+.++.+||.+||+.||.+|||+.    |+++||||++..+.
T Consensus       254 ~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dP~~Rpt~~----ell~hp~~~~~~~~  314 (387)
T 1kob_A          254 DDLETLQNVKRCDWEFDEDAFSS-----VSPEAKDFIKNLLQKEPRKRLTVH----DALEHPWLKGDHSN  314 (387)
T ss_dssp             SHHHHHHHHHHCCCCCCSSTTTT-----SCHHHHHHHHTTSCSSGGGSCCHH----HHHTSTTTSSCCTT
T ss_pred             CHHHHHHHHHhCCCCCCcccccc-----CCHHHHHHHHHHcCCChhHCcCHH----HHhhCccccCCccc
Confidence            88888888887765554433222     123589999999999999999998    99999999976543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=5e-50  Score=399.76  Aligned_cols=263  Identities=26%  Similarity=0.415  Sum_probs=207.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++......  ...+.+.+|+.+++.++||||+++++++.+++
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~   78 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRV-----TEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGN   78 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhceeeeEEecCCCEEEEEEEECC-----CCcEEEEEEEEccccc--chHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            5789999999999999999999886     6789999998654322  23356677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+|||||+||+|.+++...  ..++...                            ++.++.||+.||+|||++||+|
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~givH  128 (323)
T 3tki_A           79 IQYLFLEYCSGGELFDRIEPD--IGMPEPD----------------------------AQRFFHQLMAGVVYLHGIGITH  128 (323)
T ss_dssp             EEEEEEECCTTEEGGGGSBTT--TBCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEEcCCCCcHHHHHhhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccc
Confidence            999999999999998877543  2233222                            3478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.+....                                                 
T Consensus       129 ~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~-------------------------------------------------  159 (323)
T 3tki_A          129 RDIKPENLLLDERDNLKISDFGLATVFRYNN-------------------------------------------------  159 (323)
T ss_dssp             SCCSGGGEEECTTCCEEECCCTTCEECEETT-------------------------------------------------
T ss_pred             cccchHHEEEeCCCCEEEEEeeccceeccCC-------------------------------------------------
Confidence            9999999999999999999999985432100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                 ........+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+..
T Consensus       160 ---------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  212 (323)
T 3tki_A          160 ---------------------------RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (323)
T ss_dssp             ---------------------------EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred             ---------------------------cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence                                       0111234579999999999988775 779999999999999999999998766


Q ss_pred             hH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          402 NE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       402 ~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      .. ..+..+.......+...       .....+.+||.+||+.||.+|||+.    |+++||||+..-.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~L~~dP~~R~t~~----eil~h~~~~~~~~  270 (323)
T 3tki_A          213 DSCQEYSDWKEKKTYLNPWK-------KIDSAPLALLHKILVENPSARITIP----DIKKDRWYNKPLK  270 (323)
T ss_dssp             TTSHHHHHHHTTCTTSTTGG-------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTCTTTTCCCC
T ss_pred             hHHHHHHHHhcccccCCccc-------cCCHHHHHHHHHHccCChhhCcCHH----HHhhChhhccccc
Confidence            54 33333333322222111       1223589999999999999999998    9999999986543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.5e-50  Score=403.02  Aligned_cols=271  Identities=23%  Similarity=0.309  Sum_probs=206.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||+||+|++..     +++.||||++...... ......+.+|+.+|+.++||||+++++++.+
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  104 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTV-----TNETVAIKRIRLEHEE-EGVPGTAIREVSLLKELQHRNIIELKSVIHH  104 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECC-----CCceEEEEEEcccccc-cccchhHHHHHHHHHHcCCCCcceEEEEEec
Confidence            345789999999999999999999886     6789999999754322 2334556679999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|+||||++ |+|.+++....  .+.+..                            ++.++.||+.||+|||++||
T Consensus       105 ~~~~~lv~e~~~-~~L~~~~~~~~--~~~~~~----------------------------~~~i~~ql~~~l~~LH~~~i  153 (329)
T 3gbz_A          105 NHRLHLIFEYAE-NDLKKYMDKNP--DVSMRV----------------------------IKSFLYQLINGVNFCHSRRC  153 (329)
T ss_dssp             TTEEEEEEECCS-EEHHHHHHHCT--TCCHHH----------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEecCC-CCHHHHHhhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCE
Confidence            999999999996 59999987653  232222                            24788999999999999999


Q ss_pred             eeccCCCCceEEc-----cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          241 VYRDLKPENVLVR-----EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       241 iHrDLKp~NILl~-----~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      +||||||+|||++     .++.+||+|||+++.+...                                           
T Consensus       154 vH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~-------------------------------------------  190 (329)
T 3gbz_A          154 LHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIP-------------------------------------------  190 (329)
T ss_dssp             CCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC---------------------------------------------
T ss_pred             ECCCCCHHHEEEecCCCCccceEEECcCCCccccCCc-------------------------------------------
Confidence            9999999999994     4556999999998433210                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~  394 (517)
                                                         .......+||+.|+|||++.+.. ++.++|||||||++|+|++|.
T Consensus       191 -----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  235 (329)
T 3gbz_A          191 -----------------------------------IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT  235 (329)
T ss_dssp             --------------------------------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence                                               01122346899999999998754 899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCC------------------CCchh---HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGV------------------SSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~------------------~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      .||.+....+.+..+.......+....                  .....   .....++.+||.+||+.||++|||+. 
T Consensus       236 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~-  314 (329)
T 3gbz_A          236 PLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAK-  314 (329)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHH-
T ss_pred             CCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHH-
Confidence            999999888777776542111111000                  00000   01234689999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCCcc
Q 010140          454 GSVEIKRHEFFKGINWA  470 (517)
Q Consensus       454 ~~~ell~hp~f~~~~~~  470 (517)
                         |+++||||++++|+
T Consensus       315 ---e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          315 ---NALEHPYFSHNDFD  328 (329)
T ss_dssp             ---HHHTSGGGSSSCSC
T ss_pred             ---HHhCCcccCCCCCC
Confidence               99999999999996

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=400.79  Aligned_cols=261  Identities=31%  Similarity=0.475  Sum_probs=201.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|+++.     +++.||||++....     ..+.+.+|+.+|++++||||+++++++.+.
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~  120 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKG-----TQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETP  120 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECS
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECC-----CCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecC
Confidence            34789999999999999999999886     67889999997653     234566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||++||+|.+++...  ..++...                            ++.++.||+.||.|||++||+
T Consensus       121 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~~L~~LH~~~iv  170 (349)
T 2w4o_A          121 TEISLVLELVTGGELFDRIVEK--GYYSERD----------------------------AADAVKQILEAVAYLHENGIV  170 (349)
T ss_dssp             SEEEEEECCCCSCBHHHHHTTC--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEEEeCCCCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeE
Confidence            9999999999999999988653  2233222                            236789999999999999999


Q ss_pred             eccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||++.   ++.+||+|||+++....                                               
T Consensus       171 H~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~-----------------------------------------------  203 (349)
T 2w4o_A          171 HRDLKPENLLYATPAPDAPLKIADFGLSKIVEH-----------------------------------------------  203 (349)
T ss_dssp             CCCCCGGGEEESSSSTTCCEEECCCC------------------------------------------------------
T ss_pred             ecCCCcccEEEecCCCCCCEEEccCccccccCc-----------------------------------------------
Confidence            9999999999975   88999999999843221                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       204 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  251 (349)
T 2w4o_A          204 --------------------------------QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFY  251 (349)
T ss_dssp             -----------------------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             --------------------------------ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence                                            001123469999999999999999999999999999999999999998


Q ss_pred             CCChHH-HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          399 GENNEK-TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       399 ~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +..... .+..+......++......     ...++.+||.+||+.||++||++.    |+++||||.+..++
T Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~li~~~L~~dP~~Rpt~~----e~l~hp~~~~~~~~  315 (349)
T 2w4o_A          252 DERGDQFMFRRILNCEYYFISPWWDE-----VSLNAKDLVRKLIVLDPKKRLTTF----QALQHPWVTGKAAN  315 (349)
T ss_dssp             CTTCHHHHHHHHHTTCCCCCTTTTTT-----SCHHHHHHHHTTSCSSGGGSCCHH----HHHHSTTTTSTTCC
T ss_pred             CCcccHHHHHHHHhCCCccCCchhhh-----CCHHHHHHHHHHccCChhhCcCHH----HHhcCcccCCCccc
Confidence            776554 5666666555443322111     223589999999999999999998    99999999976653

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.9e-50  Score=394.52  Aligned_cols=260  Identities=34%  Similarity=0.531  Sum_probs=206.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-----------------------HHHHhHHH
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-----------------------RKKLHRAD  137 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-----------------------~~~~~~~~  137 (517)
                      +..++|++.+.||+|+||.||+|++..     +++.||||++.......                       ....+.+.
T Consensus        10 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (298)
T 2zv2_A           10 VQLNQYTLKDEIGKGSYGVVKLAYNEN-----DNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVY   84 (298)
T ss_dssp             CEETTEEEEEEEEC--CCEEEEEEETT-----TTEEEEEEEEECC-------------------------------CHHH
T ss_pred             eeecceEEEeEEeecCCEEEEEEEECC-----CCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHH
Confidence            456899999999999999999999876     67899999987543211                       12346678


Q ss_pred             HHHHHHHhcCCCCccceeeeeec--CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccc
Q 010140          138 MEKVILTMLDHPFLPTLYAEFEA--SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDV  215 (517)
Q Consensus       138 ~E~~il~~l~HpnIv~l~~~~~~--~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  215 (517)
                      +|+.+|+.++||||+++++++.+  .+.+|+||||+++++|.+++..   ..++..                        
T Consensus        85 ~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~------------------------  137 (298)
T 2zv2_A           85 QEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSED------------------------  137 (298)
T ss_dssp             HHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHH------------------------
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHH------------------------
Confidence            89999999999999999999986  6789999999999999764322   222222                        


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCC
Q 010140          216 TLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS  295 (517)
Q Consensus       216 ~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (517)
                          .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      
T Consensus       138 ----~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----------------------  191 (298)
T 2zv2_A          138 ----QARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD----------------------  191 (298)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSS----------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCcccccccc----------------------
Confidence                234778999999999999999999999999999999999999999985432100                      


Q ss_pred             CCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--
Q 010140          296 CATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--  373 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--  373 (517)
                                                                              .......||+.|+|||++.+..  
T Consensus       192 --------------------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~  215 (298)
T 2zv2_A          192 --------------------------------------------------------ALLSNTVGTPAFMAPESLSETRKI  215 (298)
T ss_dssp             --------------------------------------------------------CEECCCCSCGGGCCGGGCCTTCCC
T ss_pred             --------------------------------------------------------ccccCCcCCccccChhhhccCCCC
Confidence                                                                    0112346999999999998765  


Q ss_pred             -CCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          374 -HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       374 -~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                       ++.++|||||||++|+|++|..||.+.........+......++.....       ..++.+||.+||+.||++||++.
T Consensus       216 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~li~~~l~~dp~~R~s~~  288 (298)
T 2zv2_A          216 FSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDI-------AEDLKDLITRMLDKNPESRIVVP  288 (298)
T ss_dssp             EESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCC-------CHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             CCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCcccc-------CHHHHHHHHHHhhcChhhCCCHH
Confidence             3788999999999999999999999988877777777766555532211       22489999999999999999998


Q ss_pred             CChHHhhcCCCcC
Q 010140          453 KGSVEIKRHEFFK  465 (517)
Q Consensus       453 ~~~~ell~hp~f~  465 (517)
                          |+++||||+
T Consensus       289 ----e~l~hp~~~  297 (298)
T 2zv2_A          289 ----EIKLHPWVT  297 (298)
T ss_dssp             ----HHTTCHHHH
T ss_pred             ----HHhcCcccc
Confidence                999999985

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=8.3e-50  Score=392.29  Aligned_cols=267  Identities=24%  Similarity=0.340  Sum_probs=204.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++++.||+|+||+||+|+++.     +++.||||++...... ......+.+|+.+++.++||||+++++++.+++
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   74 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNRE-----THEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDK   74 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEESSCSS-TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             CCCceeeeEecCCCCeEEEEEEECC-----CCceEEEEeeeccCCc-CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC
Confidence            3689999999999999999999986     6789999998644211 223355667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+|||||++ +|.+.+.... ..++...                            ++.++.||+.||+|||++||+|
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~-~~l~~~~----------------------------~~~~~~ql~~~l~~lH~~~ivH  124 (292)
T 3o0g_A           75 KLTLVFEFCDQ-DLKKYFDSCN-GDLDPEI----------------------------VKSFLFQLLKGLGFCHSRNVLH  124 (292)
T ss_dssp             EEEEEEECCSE-EHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEecCCC-CHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCeec
Confidence            99999999964 6766665432 2233322                            2478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       125 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------  154 (292)
T 3o0g_A          125 RDLKPQNLLINRNGELKLANFGLARAFGIP--------------------------------------------------  154 (292)
T ss_dssp             CCCSGGGEEECTTSCEEECCCTTCEECCSC--------------------------------------------------
T ss_pred             CCCCHHHEEEcCCCCEEEeecccceecCCc--------------------------------------------------
Confidence            999999999999999999999998543210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC-CCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP-FKGE  400 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P-f~~~  400 (517)
                                                  .......+||+.|+|||++.+.. ++.++|||||||++|+|++|..| |.+.
T Consensus       155 ----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~  206 (292)
T 3o0g_A          155 ----------------------------VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_dssp             ----------------------------CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred             ----------------------------cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC
Confidence                                        01123346899999999998876 89999999999999999988777 5566


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCC--------------------chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSS--------------------SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~--------------------~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +..+.+..+.......+......                    ........++++||.+||+.||++|||+.    |+++
T Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~----e~l~  282 (292)
T 3o0g_A          207 DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAE----EALQ  282 (292)
T ss_dssp             SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHH----HHHT
T ss_pred             CHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHH----HHhc
Confidence            66666665543111110000000                    00001234589999999999999999998    9999


Q ss_pred             CCCcCCC
Q 010140          461 HEFFKGI  467 (517)
Q Consensus       461 hp~f~~~  467 (517)
                      ||||+++
T Consensus       283 hp~f~~~  289 (292)
T 3o0g_A          283 HPYFSDF  289 (292)
T ss_dssp             SGGGTTC
T ss_pred             CcccccC
Confidence            9999864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.9e-50  Score=404.32  Aligned_cols=260  Identities=29%  Similarity=0.456  Sum_probs=210.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++.+..       ....+|+.+|.++ +||||+++++++.++
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-------~~~~~E~~~l~~~~~hp~iv~~~~~~~~~   88 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKA-----TNMEFAVKIIDKSK-------RDPTEEIEILLRYGQHPNIITLKDVYDDG   88 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEETTT-------CCCHHHHHHHHHHTTSTTBCCEEEEEECS
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECC-----CCCEEEEEEEEccc-------CChHHHHHHHHHhcCCCCcCeEEEEEEcC
Confidence            3679999999999999999999986     67899999997642       1233588888887 799999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||+||+|.+++...  ..+++..                            ++.++.||+.||+|||++||+
T Consensus        89 ~~~~lv~E~~~gg~L~~~i~~~--~~~~~~~----------------------------~~~~~~qi~~al~~lH~~giv  138 (342)
T 2qr7_A           89 KYVYVVTELMKGGELLDKILRQ--KFFSERE----------------------------ASAVLFTITKTVEYLHAQGVV  138 (342)
T ss_dssp             SEEEEEECCCCSCBHHHHHHTC--TTCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcE
Confidence            9999999999999999988764  2233322                            247789999999999999999


Q ss_pred             eccCCCCceEEccC----CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          242 YRDLKPENVLVRED----GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       242 HrDLKp~NILl~~~----~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ||||||+|||+..+    +.+||+|||+++.....                                             
T Consensus       139 HrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~---------------------------------------------  173 (342)
T 2qr7_A          139 HRDLKPSNILYVDESGNPESIRICDFGFAKQLRAE---------------------------------------------  173 (342)
T ss_dssp             CSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCT---------------------------------------------
T ss_pred             eccCCHHHEEEecCCCCcCeEEEEECCCcccCcCC---------------------------------------------
Confidence            99999999998543    35999999998543210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       .......+||+.|+|||++.+..|+.++|||||||++|+|++|..||
T Consensus       174 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf  220 (342)
T 2qr7_A          174 ---------------------------------NGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPF  220 (342)
T ss_dssp             ---------------------------------TCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ---------------------------------CCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCC
Confidence                                             01123457999999999999888999999999999999999999999


Q ss_pred             CC---CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccccc
Q 010140          398 KG---ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       398 ~~---~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~  473 (517)
                      .+   ....+.+..+..+...++......     .+.++++||.+||..||++||++.    |+++||||.  +|..+.
T Consensus       221 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dP~~R~t~~----~il~hp~~~--~~~~~~  288 (342)
T 2qr7_A          221 ANGPDDTPEEILARIGSGKFSLSGGYWNS-----VSDTAKDLVSKMLHVDPHQRLTAA----LVLRHPWIV--HWDQLP  288 (342)
T ss_dssp             CSSTTSCHHHHHHHHHHCCCCCCSTTTTT-----SCHHHHHHHHHHTCSSTTTSCCHH----HHTTSHHHH--TGGGSC
T ss_pred             CCCCcCCHHHHHHHHccCCcccCcccccc-----CCHHHHHHHHHHCCCChhHCcCHH----HHhcCCeec--Cccccc
Confidence            86   345677777877766554432221     123589999999999999999997    999999995  576553

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.6e-49  Score=388.53  Aligned_cols=261  Identities=33%  Similarity=0.544  Sum_probs=220.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|++..     +++.||||++.............+.+|+.+++.++||||+++++++
T Consensus         9 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   83 (284)
T 2vgo_A            9 RKFTIDDFDIGRPLGKGKFGNVYLAREKQ-----NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYF   83 (284)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             cchhhhhceeeheecCCCCeEEEEEEEcC-----CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEE
Confidence            44667899999999999999999999876     6789999999876554444456778899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++|+|.+++....  .++...                            +..++.||+.||.|||++
T Consensus        84 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lH~~  133 (284)
T 2vgo_A           84 HDRKRIYLMLEFAPRGELYKELQKHG--RFDEQR----------------------------SATFMEELADALHYCHER  133 (284)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHHHS--SCCHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             EcCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999887642  222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.....                                               
T Consensus       134 ~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~-----------------------------------------------  166 (284)
T 2vgo_A          134 KVIHRDIKPENLLMGYKGELKIADFGWSVHAPS-----------------------------------------------  166 (284)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCCTTCEECSS-----------------------------------------------
T ss_pred             CceecCCCHHHEEEcCCCCEEEecccccccCcc-----------------------------------------------
Confidence            999999999999999999999999998733210                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                       .......||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       167 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  213 (284)
T 2vgo_A          167 ---------------------------------LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFD  213 (284)
T ss_dssp             ---------------------------------SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------------------------cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCC
Confidence                                             01123468999999999999889999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .....+....+......+|...         ..++++||.+||+.||.+||++.    |+++||||+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~----~ll~h~~~~~~  269 (284)
T 2vgo_A          214 SPSHTETHRRIVNVDLKFPPFL---------SDGSKDLISKLLRYHPPQRLPLK----GVMEHPWVKAN  269 (284)
T ss_dssp             CSSHHHHHHHHHTTCCCCCTTS---------CHHHHHHHHHHSCSSGGGSCCHH----HHHTCHHHHHH
T ss_pred             CCCHhHHHHHHhccccCCCCcC---------CHHHHHHHHHHhhcCHhhCCCHH----HHhhCHHHHhh
Confidence            9888888888877665554321         12489999999999999999998    99999999853

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=4.4e-50  Score=399.14  Aligned_cols=274  Identities=25%  Similarity=0.321  Sum_probs=196.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++.....  ......+.+|+.+|+.++||||+++++++.+++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   76 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKT-----TGVYVALKEVKLDSE--EGTPSTAIREISLMKELKHENIVRLYDVIHTEN   76 (317)
T ss_dssp             ---------------CEEEEEECSS-----SCCEEEEEEEECCST--TCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTT
T ss_pred             ccceeEeeEECCCCCEEEEEEEECC-----CCcEEEEEEeecccc--cccHHHHHHHHHHHHhcCCCCcceEEEEEEECC
Confidence            4689999999999999999999876     678999999865421  123345667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++ |+|.+++..........                        ......++.++.||+.||+|||++||+|
T Consensus        77 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~------------------------~~~~~~~~~~~~qi~~aL~~lH~~~ivH  131 (317)
T 2pmi_A           77 KLTLVFEFMD-NDLKKYMDSRTVGNTPR------------------------GLELNLVKYFQWQLLQGLAFCHENKILH  131 (317)
T ss_dssp             EEEEEEECCC-CBHHHHHHHHHSSSCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEEecC-CCHHHHHHhcccccccc------------------------CCCHHHHHHHHHHHHHHHHHHHHCCeee
Confidence            9999999996 69999886542111100                        0111223467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.+|.+||+|||+++.....                                                  
T Consensus       132 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------  161 (317)
T 2pmi_A          132 RDLKPQNLLINKRGQLKLGDFGLARAFGIP--------------------------------------------------  161 (317)
T ss_dssp             CCCCGGGEEECTTCCEEECCCSSCEETTSC--------------------------------------------------
T ss_pred             CCCChHHeEEcCCCCEEECcCccceecCCC--------------------------------------------------
Confidence            999999999999999999999998543210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .......+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.+
T Consensus       162 ----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  213 (317)
T 2pmi_A          162 ----------------------------VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN  213 (317)
T ss_dssp             ----------------------------CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ----------------------------cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        0011234689999999999874 58999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCCCCC------------------CCCCCchh-------HHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          402 NEKTLINILKKPLTFPR------------------IGVSSSKE-------FEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~------------------~~~~~~~~-------~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      ..+.+..+.......+.                  ........       .....++.+||.+||+.||++|||+.    
T Consensus       214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~----  289 (317)
T 2pmi_A          214 DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAK----  289 (317)
T ss_dssp             HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHH----
T ss_pred             hHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHH----
Confidence            87777666431110000                  00000000       01223689999999999999999998    


Q ss_pred             HhhcCCCcCCCCcc
Q 010140          457 EIKRHEFFKGINWA  470 (517)
Q Consensus       457 ell~hp~f~~~~~~  470 (517)
                      |+++||||+...|.
T Consensus       290 e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          290 QALHHPWFAEYYHH  303 (317)
T ss_dssp             HHTTSGGGGGGCC-
T ss_pred             HHhCChhhhcccch
Confidence            99999999987765

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.5e-49  Score=413.75  Aligned_cols=300  Identities=24%  Similarity=0.305  Sum_probs=195.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee---
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE---  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~---  159 (517)
                      .++|++++.||+|+||+||+|+++.     +++.||||++.+... ......++.+|+.+|+.++|||||++++++.   
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  125 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKL-----EKRVVAIKKILRVFE-DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKD  125 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC-------CEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECC-----CCcEEEEEEechhhc-CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCC
Confidence            4789999999999999999999886     678999999865321 1234566778999999999999999999994   


Q ss_pred             --cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          160 --ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       160 --~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                        ....+|+||||+ +|+|.+++...  ..+++.                            .++.|+.||+.||+|||+
T Consensus       126 ~~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~----------------------------~~~~~~~qi~~aL~~LH~  174 (458)
T 3rp9_A          126 VEKFDELYVVLEIA-DSDFKKLFRTP--VYLTEL----------------------------HIKTLLYNLLVGVKYVHS  174 (458)
T ss_dssp             TTTCCCEEEEECCC-SEEHHHHHHSS--CCCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             cccCceEEEEEecc-ccchhhhcccC--CCCCHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence              346799999998 67999988653  223332                            234788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.++.+||+|||+++.............                             ..      
T Consensus       175 ~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~-----------------------------~~------  219 (458)
T 3rp9_A          175 AGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLP-----------------------------IS------  219 (458)
T ss_dssp             TTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC-------------------------------------
T ss_pred             CCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccc-----------------------------cC------
Confidence            9999999999999999999999999999965542111000000                             00      


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-CCCCCccchHHHHHHHHHHHhh----
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLY----  392 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-~~~~~~~~DiWSlGvil~ellt----  392 (517)
                                    ....+....+  ..............+||+.|+|||++. +..|+.++||||||||+|||++    
T Consensus       220 --------------~~~~~~~~~~--~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~  283 (458)
T 3rp9_A          220 --------------PREDDMNLVT--FPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKE  283 (458)
T ss_dssp             -----------------------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTT
T ss_pred             --------------cccccccccc--ccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccc
Confidence                          0000000000  000000112345678999999999874 5569999999999999999998    


Q ss_pred             -------CCCCCCCCCh--------------------HHHHHHHhc---CCC-----------------CCCCCCCCC-c
Q 010140          393 -------GTTPFKGENN--------------------EKTLINILK---KPL-----------------TFPRIGVSS-S  424 (517)
Q Consensus       393 -------G~~Pf~~~~~--------------------~~~~~~i~~---~~~-----------------~~p~~~~~~-~  424 (517)
                             |+++|.+.+.                    .+.+..+..   .+.                 .++...... .
T Consensus       284 ~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (458)
T 3rp9_A          284 NVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLA  363 (458)
T ss_dssp             TCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGG
T ss_pred             cccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHH
Confidence                   7788876541                    122222211   100                 000000000 0


Q ss_pred             hh-HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          425 KE-FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       425 ~~-~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      .. .....++.+||.+||+.||++|||+.    |+|+||||++++|.....
T Consensus       364 ~~~~~~s~~~~dLl~~mL~~dP~~R~t~~----e~L~Hp~f~~~~~~~~e~  410 (458)
T 3rp9_A          364 ERFPASSADAIHLLKRMLVFNPNKRITIN----ECLAHPFFKEVRIAEVET  410 (458)
T ss_dssp             GGSTTSCHHHHHHHHHHSCSSTTTSCCHH----HHHHSGGGTTTCCGGGCC
T ss_pred             HHCCCCCHHHHHHHHHHhccCccccCCHH----HHhcCHhhhhcCCCccCC
Confidence            00 01234689999999999999999997    999999999999986643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.2e-49  Score=399.89  Aligned_cols=268  Identities=28%  Similarity=0.428  Sum_probs=213.4

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-----CC
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-----HP  149 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----Hp  149 (517)
                      ....+.+..++|+++++||+|+||.||+|++..     +++.||||++....    ........|+.+++.+.     ||
T Consensus        26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~h~   96 (360)
T 3llt_A           26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHID-----NKKYYAVKVVRNIK----KYTRSAKIEADILKKIQNDDINNN   96 (360)
T ss_dssp             CCCTTCEETTTEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECSCH----HHHHHHHHHHHHHHHTCCCSTTGG
T ss_pred             eeecceEecCEEEEEEEEcccCCeEEEEEEECC-----CCeEEEEEEeccch----hhhhhhHHHHHHHHHhcccCCCCC
Confidence            344556667899999999999999999999876     67899999997542    22344556999999986     99


Q ss_pred             CccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          150 FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       150 nIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      ||+++++++...+.+|+||||+ +++|.+++.......++...+                            +.++.||+
T Consensus        97 ~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~----------------------------~~i~~qi~  147 (360)
T 3llt_A           97 NIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDI----------------------------KLYCIEIL  147 (360)
T ss_dssp             GBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHH----------------------------HHHHHHHH
T ss_pred             CeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHH
Confidence            9999999999999999999999 999999998765444444333                            36789999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEcc-------------------------CCcEEeccCCCcccccccccccCCcchHHH
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVRE-------------------------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEA  284 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~-------------------------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~  284 (517)
                      .||+|||++||+||||||+|||++.                         ++.+||+|||+++....             
T Consensus       148 ~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~-------------  214 (360)
T 3llt_A          148 KALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD-------------  214 (360)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS-------------
T ss_pred             HHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC-------------
Confidence            9999999999999999999999975                         78999999999843110             


Q ss_pred             HhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcc
Q 010140          285 IEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYL  364 (517)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~  364 (517)
                                                                                          .....+||+.|+
T Consensus       215 --------------------------------------------------------------------~~~~~~gt~~y~  226 (360)
T 3llt_A          215 --------------------------------------------------------------------YHGSIINTRQYR  226 (360)
T ss_dssp             --------------------------------------------------------------------CCCSCCSCGGGC
T ss_pred             --------------------------------------------------------------------CCcCccCccccc
Confidence                                                                                112347999999


Q ss_pred             cchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCC------------------------
Q 010140          365 APEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIG------------------------  420 (517)
Q Consensus       365 APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~------------------------  420 (517)
                      |||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+.......|...                        
T Consensus       227 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~  306 (360)
T 3llt_A          227 APEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPE  306 (360)
T ss_dssp             CHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTT
T ss_pred             CcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcc
Confidence            99999999999999999999999999999999999887777666554322222100                        


Q ss_pred             CCC-ch------------hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          421 VSS-SK------------EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       421 ~~~-~~------------~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ... ..            .......+.+||.+||+.||++|||+.    |+|+||||+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~----elL~hp~f~  360 (360)
T 3llt_A          307 NASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPA----ELLKHKFLE  360 (360)
T ss_dssp             TCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHH----HHTTSGGGC
T ss_pred             cccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHH----HHhcCcccC
Confidence            000 00            000113577999999999999999998    999999996

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.6e-49  Score=407.46  Aligned_cols=256  Identities=25%  Similarity=0.370  Sum_probs=199.4

Q ss_pred             CCCCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh-cCCCCccceeeeee
Q 010140           82 GLDHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM-LDHPFLPTLYAEFE  159 (517)
Q Consensus        82 ~~~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~  159 (517)
                      ..++|.+. +.||+|+||+||+|+++.     +++.||||++....        .+.+|+.++.+ .+||||++++++|.
T Consensus        59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--------~~~~E~~~~~~~~~hp~iv~l~~~~~  125 (400)
T 1nxk_A           59 IIDDYKVTSQVLGLGINGKVLQIFNKR-----TQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYE  125 (400)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEE
T ss_pred             ccccceeccceeeeccCeEEEEEEECC-----CCCEEEEEEeCcch--------hHHHHHHHHHHhcCCCCcceEeEEEe
Confidence            35678887 789999999999999886     67899999996432        23457877744 58999999999987


Q ss_pred             c----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          160 A----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       160 ~----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      .    ...+|||||||+||+|.+++.......+++..+                            +.|+.||+.||+||
T Consensus       126 ~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~----------------------------~~i~~qi~~aL~~L  177 (400)
T 1nxk_A          126 NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREA----------------------------SEIMKSIGEAIQYL  177 (400)
T ss_dssp             EEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             ecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHH----------------------------HHHHHHHHHHHHHH
Confidence            5    678999999999999999998754333443333                            37789999999999


Q ss_pred             HhcCceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      |++||+||||||+|||++.   ++.+||+|||+++....                                         
T Consensus       178 H~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~-----------------------------------------  216 (400)
T 1nxk_A          178 HSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS-----------------------------------------  216 (400)
T ss_dssp             HHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------------------------------------
T ss_pred             HHCCccccCcCcceEEEecCCCCccEEEEecccccccCC-----------------------------------------
Confidence            9999999999999999987   78999999999843221                                         


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                            .......+||+.|+|||++.+..|+.++|||||||++|||++
T Consensus       217 --------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  258 (400)
T 1nxk_A          217 --------------------------------------HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC  258 (400)
T ss_dssp             ------------------------------------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHh
Confidence                                                  011234579999999999999899999999999999999999


Q ss_pred             CCCCCCCCChH----HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGENNE----KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~~~~----~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |..||.+....    .....+..+...++......     .+.++.+||.+||+.||++|||+.    |+++||||..
T Consensus       259 g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dP~~Rpt~~----eil~hp~~~~  327 (400)
T 1nxk_A          259 GYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE-----VSEEVKMLIRNLLKTEPTQRMTIT----EFMNHPWIMQ  327 (400)
T ss_dssp             SSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTT-----SCHHHHHHHHTTSCSSGGGSCCHH----HHHHSHHHHT
T ss_pred             CCCCCCCCccccccHHHHHHHHcCcccCCCccccc-----CCHHHHHHHHHHCCCChhHCcCHH----HHhcCccccC
Confidence            99999876532    24455555555555432221     223589999999999999999997    9999999975

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1e-49  Score=390.96  Aligned_cols=267  Identities=25%  Similarity=0.367  Sum_probs=203.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++++.||+|+||.||+|++.      +++.||+|++...... ......+.+|+.+++.++||||+++++++.+.+
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~~------~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQNN------YGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET------TSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             CccchhhhhcccCCCEEEEEEEcC------CCCEEEEEEEeccccc-cccchhHHHHHHHHHhcCCCCEeeeeeEEccCC
Confidence            368999999999999999999873      4678999998654211 122355667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++ ++|.+++.... ..+...                            .++.++.||+.||+|||++||+|
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~----------------------------~~~~~~~qi~~~l~~lH~~~i~H  123 (288)
T 1ob3_A           74 RLVLVFEHLD-QDLKKLLDVCE-GGLESV----------------------------TAKSFLLQLLNGIAYCHDRRVLH  123 (288)
T ss_dssp             CEEEEEECCS-EEHHHHHHTST-TCCCHH----------------------------HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eEEEEEEecC-CCHHHHHHhcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeec
Confidence            9999999996 49988886542 222222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       124 ~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------  153 (288)
T 1ob3_A          124 RDLKPQNLLINREGELKIADFGLARAFGIP--------------------------------------------------  153 (288)
T ss_dssp             SCCCGGGEEECTTSCEEECCTTHHHHHCC---------------------------------------------------
T ss_pred             CCCCHHHEEEcCCCCEEEeECccccccCcc--------------------------------------------------
Confidence            999999999999999999999998432210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.+
T Consensus       154 ----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (288)
T 1ob3_A          154 ----------------------------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS  205 (288)
T ss_dssp             ------------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ----------------------------ccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        0011234689999999999875 48999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCC-----CCCC----------CCCCc---hh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLT-----FPRI----------GVSSS---KE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~-----~p~~----------~~~~~---~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+.+..+......     ++..          .....   ..  .....++.+||.+||+.||++|||+.    |+++|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----e~l~h  281 (288)
T 1ob3_A          206 EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAK----QALEH  281 (288)
T ss_dssp             HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHH----HHHTS
T ss_pred             HHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHH----HHhcC
Confidence            87776666431100     0000          00000   00  01234588999999999999999998    99999


Q ss_pred             CCcCCCC
Q 010140          462 EFFKGIN  468 (517)
Q Consensus       462 p~f~~~~  468 (517)
                      |||++.+
T Consensus       282 p~f~~~n  288 (288)
T 1ob3_A          282 AYFKENN  288 (288)
T ss_dssp             GGGGC--
T ss_pred             cchhhcC
Confidence            9998753

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.4e-49  Score=399.84  Aligned_cols=299  Identities=27%  Similarity=0.387  Sum_probs=219.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--HHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--IRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||+|++.+....  .......+.+|+.+|+.++||||+++++++.+.
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQ-----TRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hheeecceeeecCCeEEEEEEECC-----CCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            579999999999999999999876     6789999999876432  234456788899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhh--------hhhhhhhcCCccc--cccchhhhhhhHHHHHHHHH
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF--------LLFFFFYNNLGFV--HTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~--~~~~~~~~~~~~~~~qi~~a  231 (517)
                      +..|+|||||+||+|.+++..................        ..........++.  .........++.++.||+.|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999988532111000000000000        0000000000000  01112234456799999999


Q ss_pred             HHHHHhcCceeccCCCCceEEccCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          232 LEYLHMMGIVYRDLKPENVLVREDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      |+|||++||+||||||+|||++.++  .+||+|||+++.+......                                  
T Consensus       181 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~----------------------------------  226 (345)
T 3hko_A          181 LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG----------------------------------  226 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC----------------------------------
T ss_pred             HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc----------------------------------
Confidence            9999999999999999999998776  8999999998543211000                                  


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFL  387 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil  387 (517)
                                                              .........||+.|+|||++.+  ..++.++|||||||++
T Consensus       227 ----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il  266 (345)
T 3hko_A          227 ----------------------------------------EYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLL  266 (345)
T ss_dssp             ------------------------------------------------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHH
Confidence                                                    0011234469999999999976  5689999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      |||++|..||.+....+....+......++.....     .....+.+||.+||+.||.+||++.    |+++||||++.
T Consensus       267 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~~p~~Rps~~----~~l~hp~~~~~  337 (345)
T 3hko_A          267 HLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYN-----VLSPLARDLLSNLLNRNVDERFDAM----RALQHPWISQF  337 (345)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGG-----GSCHHHHHHHHHHSCSCTTTSCCHH----HHHHSHHHHTT
T ss_pred             HHHHHCCCCCCCCChHHHHHHHHhcccccCCcccc-----cCCHHHHHHHHHHcCCChhHCCCHH----HHhcChhhccC
Confidence            99999999999999988888888776555432221     1233589999999999999999998    99999999987


Q ss_pred             Ccc
Q 010140          468 NWA  470 (517)
Q Consensus       468 ~~~  470 (517)
                      .|.
T Consensus       338 ~~~  340 (345)
T 3hko_A          338 SDK  340 (345)
T ss_dssp             SSC
T ss_pred             hHh
Confidence            763

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=8.8e-49  Score=383.08  Aligned_cols=266  Identities=26%  Similarity=0.448  Sum_probs=220.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|.++.     +++.||+|++...... ......+.+|+.+++.++||||+++++++...+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKT-----TGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEES   78 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcC-----CCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC
Confidence            4789999999999999999999886     6789999998765332 233466778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||++|++|.+++...  ..++...                            +..++.||+.||.|||++||+|
T Consensus        79 ~~~~v~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~H  128 (284)
T 3kk8_A           79 FHYLVFDLVTGGELFEDIVAR--EFYSEAD----------------------------ASHCIQQILESIAYCHSNGIVH  128 (284)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEecCCCCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcCc
Confidence            999999999999998887654  2222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCc---EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGH---IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       243 rDLKp~NILl~~~~~---vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||+|||++.++.   +||+|||++......                                               
T Consensus       129 ~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------  161 (284)
T 3kk8_A          129 RNLKPENLLLASKAKGAAVKLADFGLAIEVNDS-----------------------------------------------  161 (284)
T ss_dssp             SCCCGGGEEESSSSTTCCEEECCCTTCEECCSS-----------------------------------------------
T ss_pred             CCCCHHHEEEecCCCCCcEEEeeceeeEEcccC-----------------------------------------------
Confidence            999999999986655   999999998432210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      .......||+.|+|||++.+..++.++|||||||++|+|++|..||.+
T Consensus       162 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  209 (284)
T 3kk8_A          162 --------------------------------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD  209 (284)
T ss_dssp             --------------------------------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             --------------------------------ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCC
Confidence                                            011234699999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+.......+......++......     ...++.+||.+||+.||++||++.    |+++||||++..+...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~li~~~l~~dp~~Rps~~----~~l~h~~~~~~~~~~~  273 (284)
T 3kk8_A          210 EDQHRLYAQIKAGAYDYPSPEWDT-----VTPEAKSLIDSMLTVNPKKRITAD----QALKVPWICNRERVAS  273 (284)
T ss_dssp             SSHHHHHHHHHHTCCCCCTTTTTT-----SCHHHHHHHHHHSCSSTTTSCCHH----HHTTSHHHHSCCCGGG
T ss_pred             CchhHHHHHHHhccccCCchhhcc-----cCHHHHHHHHHHcccChhhCCCHH----HHhcCccccCChhHHh
Confidence            998888888887766655433222     123589999999999999999998    9999999998776543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-49  Score=396.96  Aligned_cols=269  Identities=26%  Similarity=0.340  Sum_probs=205.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++++.||+|+||.||+|+++.     +++.||||++......  .....+.+|+.+|+.++||||+++++++.+.+
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKL-----TDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEK   73 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECC-----CCcEEEEEEEeccccc--ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC
Confidence            3689999999999999999999886     6789999999765422  22233446999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||++ |+|.+++.... ..+...                            .++.++.||+.||+|||++||+|
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~----------------------------~~~~~~~qi~~aL~~LH~~~ivH  123 (324)
T 3mtl_A           74 SLTLVFEYLD-KDLKQYLDDCG-NIINMH----------------------------NVKLFLFQLLRGLAYCHRQKVLH  123 (324)
T ss_dssp             CEEEEEECCS-EEHHHHHHHTT-TCCCHH----------------------------HHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEEEecccc-cCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCccC
Confidence            9999999996 69998887642 222222                            22467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.....                                                  
T Consensus       124 ~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~--------------------------------------------------  153 (324)
T 3mtl_A          124 RDLKPQNLLINERGELKLADFGLARAKSIP--------------------------------------------------  153 (324)
T ss_dssp             SSCCGGGEEECTTCCEEECSSSEEECC-----------------------------------------------------
T ss_pred             CCcCHHHEEECCCCCEEEccCcccccccCC--------------------------------------------------
Confidence            999999999999999999999998432210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .......+||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.+
T Consensus       154 ----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (324)
T 3mtl_A          154 ----------------------------TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGST  205 (324)
T ss_dssp             -------------------------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ----------------------------ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        011123468999999999987 458999999999999999999999999998


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCc---hh------------------HHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSS---KE------------------FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~---~~------------------~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+.+..+.......+.......   ..                  .....++.+||.+||+.||.+|||+.    |+++
T Consensus       206 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~----e~l~  281 (324)
T 3mtl_A          206 VEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAE----DAMK  281 (324)
T ss_dssp             HHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHH----HHTT
T ss_pred             HHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHH----HHhc
Confidence            88777666542111111111100   00                  01234689999999999999999998    9999


Q ss_pred             CCCcCCCCcc
Q 010140          461 HEFFKGINWA  470 (517)
Q Consensus       461 hp~f~~~~~~  470 (517)
                      ||||.++.+.
T Consensus       282 hp~f~~~~~~  291 (324)
T 3mtl_A          282 HPFFLSLGER  291 (324)
T ss_dssp             SGGGGGGCST
T ss_pred             Chhhhhcccc
Confidence            9999987653

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-49  Score=394.48  Aligned_cols=270  Identities=26%  Similarity=0.316  Sum_probs=203.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--HHHHHhHHHHHHHHHHhc---CCCCcccee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--IRKKLHRADMEKVILTML---DHPFLPTLY  155 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~~E~~il~~l---~HpnIv~l~  155 (517)
                      +..++|++++.||+|+||+||+|++..     +++.||||++......  .......+.+|+.+++.+   +||||++++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~   80 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPH-----SGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLM   80 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTT-----TCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECC-----CCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEee
Confidence            446799999999999999999999876     6789999998632100  000112334467666665   599999999


Q ss_pred             eeeecCc-----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          156 AEFEASH-----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       156 ~~~~~~~-----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                      +++....     .+|+||||+. |+|.+++.......+++..+                            +.++.||+.
T Consensus        81 ~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~----------------------------~~i~~qi~~  131 (308)
T 3g33_A           81 DVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETI----------------------------KDLMRQFLR  131 (308)
T ss_dssp             EEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHH----------------------------HHHHHHHHH
T ss_pred             eeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHH----------------------------HHHHHHHHH
Confidence            9997654     5899999995 69999988765444444333                            377899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ||+|||++||+||||||+|||++.++.+||+|||+++....                                       
T Consensus       132 al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~---------------------------------------  172 (308)
T 3g33_A          132 GLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSY---------------------------------------  172 (308)
T ss_dssp             HHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTT---------------------------------------
T ss_pred             HHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCccccccCC---------------------------------------
Confidence            99999999999999999999999999999999999843221                                       


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~el  390 (517)
                                                              .......+||+.|+|||++.+..++.++|||||||++|+|
T Consensus       173 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l  212 (308)
T 3g33_A          173 ----------------------------------------QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM  212 (308)
T ss_dssp             ----------------------------------------CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHT
T ss_pred             ----------------------------------------CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHH
Confidence                                                    0112334799999999999999999999999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCC----------------Cchh--HHhhhhHHHHHHHhccCCcccccCCC
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVS----------------SSKE--FEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~----------------~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ++|.+||.+.+..+.+..+.......+.....                ....  ......+.+||.+||+.||++|||+.
T Consensus       213 ~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  292 (308)
T 3g33_A          213 FRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAF  292 (308)
T ss_dssp             TTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHH
Confidence            99999999998888777765421111111000                0000  01234689999999999999999998


Q ss_pred             CChHHhhcCCCcCCC
Q 010140          453 KGSVEIKRHEFFKGI  467 (517)
Q Consensus       453 ~~~~ell~hp~f~~~  467 (517)
                          |+|+||||+..
T Consensus       293 ----e~l~h~~~~~~  303 (308)
T 3g33_A          293 ----RALQHSYLHKD  303 (308)
T ss_dssp             ----HHHTSTTC---
T ss_pred             ----HHhcCccccCC
Confidence                99999999864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.5e-49  Score=415.09  Aligned_cols=262  Identities=27%  Similarity=0.379  Sum_probs=202.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++++.||+|+||+||+|++..     +++.||||++.+... ......++.+|+.+|+.++||||++++++|... 
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~  134 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAV-----LDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK  134 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETT-----TTEEEEEEEEESGGG-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECC-----CCCEEEEEEECcccc-ChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCC
Confidence            4789999999999999999999887     678999999975421 123455677899999999999999999999654 


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ..+||||||+++ +|.+.+...    +...                            .++.++.||+.||+|||
T Consensus       135 ~~~~~~~~~lv~E~~~~-~l~~~~~~~----l~~~----------------------------~~~~~~~qil~aL~~lH  181 (464)
T 3ttj_A          135 TLEEFQDVYLVMELMDA-NLCQVIQME----LDHE----------------------------RMSYLLYQMLCGIKHLH  181 (464)
T ss_dssp             STTTCCEEEEEEECCSE-EHHHHHTSC----CCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEEeCCCC-CHHHHHhhc----CCHH----------------------------HHHHHHHHHHHHHHHHH
Confidence                 467999999965 566655321    2222                            23478899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       182 ~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~---------------------------------------------  216 (464)
T 3ttj_A          182 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT---------------------------------------------  216 (464)
T ss_dssp             HTTCCCCCCCGGGEEECTTSCEEECCCCCC--------------------------------------------------
T ss_pred             HCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCC---------------------------------------------
Confidence            99999999999999999999999999999843221                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......+||+.|+|||++.+..|+.++|||||||++|||++|++|
T Consensus       217 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~p  262 (464)
T 3ttj_A          217 ----------------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKIL  262 (464)
T ss_dssp             ----------------------------------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence                                              0112345799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCC-------------------CCCCC------------CCch--hHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKKPLTF-------------------PRIGV------------SSSK--EFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~-------------------p~~~~------------~~~~--~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+..+.+.++.......                   +....            ....  .-....++++||.+||+.
T Consensus       263 F~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~  342 (464)
T 3ttj_A          263 FPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI  342 (464)
T ss_dssp             SCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCC
Confidence            99998877777665421110                   00000            0000  001134689999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||++|||+.    |+|+||||+.
T Consensus       343 dP~~R~ta~----e~L~Hp~~~~  361 (464)
T 3ttj_A          343 DPAKRISVD----DALQHPYINV  361 (464)
T ss_dssp             STTTSCCHH----HHHTSTTTGG
T ss_pred             ChhhCCCHH----HHhcChhhhh
Confidence            999999998    9999999984

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.9e-49  Score=396.35  Aligned_cols=269  Identities=27%  Similarity=0.424  Sum_probs=216.8

Q ss_pred             CCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           84 DHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      ++|.+. +.||+|+||.||+|+++.     +++.||+|++...... ......+.+|+.++..+ +||||+++++++.+.
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~  101 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKS-----TGQEYAAKFLKKRRRG-QDCRAEILHEIAVLELAKSCPRVINLHEVYENT  101 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEESEETT-EECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             hEEeeccceeCCCCCeEEEEEEECC-----CCCEEEEEEEehhhcc-hHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence            468887 899999999999999886     6789999998754211 12234566799999998 579999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+|||||+||+|.+++.......++...                            ++.++.||+.||+|||++||+
T Consensus       102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~----------------------------~~~i~~ql~~~L~~LH~~giv  153 (327)
T 3lm5_A          102 SEIILILEYAAGGEIFSLCLPELAEMVSEND----------------------------VIRLIKQILEGVYYLHQNNIV  153 (327)
T ss_dssp             SEEEEEEECCTTEEGGGGGSSCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CeEEEEEEecCCCcHHHHHHHhcccCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCee
Confidence            9999999999999999887554333333332                            247789999999999999999


Q ss_pred             eccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||++.   ++.+||+|||+++.....                                              
T Consensus       154 H~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~----------------------------------------------  187 (327)
T 3lm5_A          154 HLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA----------------------------------------------  187 (327)
T ss_dssp             CSCCCGGGEEESCBTTBCCEEECCGGGCEEC-------------------------------------------------
T ss_pred             cCcCChHHEEEecCCCCCcEEEeeCccccccCCc----------------------------------------------
Confidence            9999999999987   789999999998543210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                       ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       188 ---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  234 (327)
T 3lm5_A          188 ---------------------------------CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFV  234 (327)
T ss_dssp             ---------------------------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ---------------------------------cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                                             01123469999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      +.+..+.+..+......++.......     ...+.+||.+||+.||.+|||+.    |+++||||++.+|+.+..
T Consensus       235 ~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~li~~~L~~dP~~Rpt~~----~ll~h~~~~~~~~~~~~~  301 (327)
T 3lm5_A          235 GEDNQETYLNISQVNVDYSEETFSSV-----SQLATDFIQSLLVKNPEKRPTAE----ICLSHSWLQQWDFENLFH  301 (327)
T ss_dssp             CSSHHHHHHHHHHTCCCCCTTTTTTS-----CHHHHHHHHHHSCSSGGGSCCHH----HHTTCGGGCCCCTTCC--
T ss_pred             CCCchHHHHHHHhcccccCchhhccc-----CHHHHHHHHHHcCCChhhCcCHH----HHhCCHhhcccccccccC
Confidence            99988888887776555544332221     23589999999999999999998    999999999999986643

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.8e-49  Score=395.37  Aligned_cols=267  Identities=28%  Similarity=0.436  Sum_probs=219.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||+|++........   .....+.+|+.+++.++||||+++++++.
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   85 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKS-----TGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE   85 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECC-----CCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            3579999999999999999999886     678999999875421100   02345677999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+..|+||||++|++|.+++...  ..++...                            ++.++.||+.||+|||++|
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~aL~~lH~~~  135 (321)
T 2a2a_A           86 NRTDVVLILELVSGGELFDFLAQK--ESLSEEE----------------------------ATSFIKQILDGVNYLHTKK  135 (321)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTC--SCEEHHH----------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999998753  2232222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCC----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDG----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |+||||||+|||++.++    .+||+|||+++.....                                           
T Consensus       136 ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------  172 (321)
T 2a2a_A          136 IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG-------------------------------------------  172 (321)
T ss_dssp             EECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTT-------------------------------------------
T ss_pred             eecCCCChHHEEEecCCCCcCCEEEccCccceecCcc-------------------------------------------
Confidence            99999999999999888    7999999998433210                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .......||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       173 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  216 (321)
T 2a2a_A          173 ------------------------------------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  216 (321)
T ss_dssp             ------------------------------------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC
T ss_pred             ------------------------------------ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCC
Confidence                                                01123469999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ||.+....+.+..+......++.....     ..+..+.+||.+||+.||++|||+.    |+++||||++++|...
T Consensus       217 pf~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~----e~l~hp~~~~~~~~~~  284 (321)
T 2a2a_A          217 PFLGDTKQETLANITSVSYDFDEEFFS-----HTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQA  284 (321)
T ss_dssp             SSCCSSHHHHHHHHHTTCCCCCHHHHT-----TCCHHHHHHHHTTSCSSTTTSCCHH----HHHHSTTTSCSSHHHH
T ss_pred             CCCCCCHHHHHHHHHhcccccChhhhc-----ccCHHHHHHHHHHcCCChhhCcCHH----HHhcCccccCCCcccc
Confidence            999998888888887765544321111     1223589999999999999999998    9999999999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-49  Score=401.95  Aligned_cols=284  Identities=38%  Similarity=0.704  Sum_probs=216.4

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-HHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      .+..++|++++.||+|+||.||+|++....  .+++.||||++++.... .......+.+|+.+|+.+ +||||++++++
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  127 (355)
T 1vzo_A           50 KVGIENFELLKVLGTGAYGKVFLVRKISGH--DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYA  127 (355)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSST--TTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEE
T ss_pred             cccccceEEEEEeccCCCEEEEEEEEcccC--CCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEE
Confidence            355689999999999999999999985321  15789999998653210 011234455699999999 69999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+.+|||||||++|+|.+++....  .++...                            ++.++.||+.||.|||+
T Consensus       128 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~aL~~LH~  177 (355)
T 1vzo_A          128 FQTETKLHLILDYINGGELFTHLSQRE--RFTEHE----------------------------VQIYVGEIVLALEHLHK  177 (355)
T ss_dssp             EEETTEEEEEECCCCSCBHHHHHHHHS--CCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EeeCceEEEEeecCCCCCHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987642  232222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.+....                                            
T Consensus       178 ~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~--------------------------------------------  213 (355)
T 1vzo_A          178 LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE--------------------------------------------  213 (355)
T ss_dssp             TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG--------------------------------------------
T ss_pred             CCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCC--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC--CCCccchHHHHHHHHHHHhhCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ--GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~--~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                       .......+||+.|+|||++.+.  .++.++|||||||++|||++|..
T Consensus       214 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~  260 (355)
T 1vzo_A          214 ---------------------------------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGAS  260 (355)
T ss_dssp             ---------------------------------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCC
Confidence                                             0112345799999999999863  47899999999999999999999


Q ss_pred             CCCCCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcc
Q 010140          396 PFKGEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       396 Pf~~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~  470 (517)
                      ||....    .......+......++...         ...+.+||.+||..||.+||+.. ..+.|+++||||+.++|.
T Consensus       261 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~  331 (355)
T 1vzo_A          261 PFTVDGEKNSQAEISRRILKSEPPYPQEM---------SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWD  331 (355)
T ss_dssp             TTSCTTSCCCHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHH
T ss_pred             CCccCCccchHHHHHHHHhccCCCCCccc---------CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChh
Confidence            997543    2344455555544443221         12489999999999999999432 234599999999999999


Q ss_pred             cccC--CCCCCCC
Q 010140          471 LIRS--IKPPEVP  481 (517)
Q Consensus       471 ~~~~--~~p~~~~  481 (517)
                      .+..  +.||+.|
T Consensus       332 ~l~~~~~~~p~~p  344 (355)
T 1vzo_A          332 DLAAKKVPAPFKP  344 (355)
T ss_dssp             HHHTTCSCCSCCC
T ss_pred             HhhhccCCCCCCC
Confidence            7754  3444433

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.5e-49  Score=401.84  Aligned_cols=285  Identities=26%  Similarity=0.378  Sum_probs=200.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~  161 (517)
                      .++|++++.||+|+||.||+|.++.     +++.||||++.+.... .....++.+|+.+|+.+. ||||+++++++...
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~i~~~~~~-~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~   81 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRR-----TGEVVAVKKIFDAFQN-STDAQRTFREIMILTELSGHENIVNLLNVLRAD   81 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETT-----TCCEEEEEEECC--CC-HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECT
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECC-----CCCEEEEEEecccccC-hHHHHHHHHHHHHHHhccCCCCCCeeeeEEecC
Confidence            4789999999999999999999887     6789999998644211 234456677999999997 99999999999754


Q ss_pred             --ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          162 --HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       162 --~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                        ..+|+|||||+ |+|..++...   .+...                            ..+.++.||+.||+|||++|
T Consensus        82 ~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~----------------------------~~~~i~~qi~~~L~~LH~~~  129 (388)
T 3oz6_A           82 NDRDVYLVFDYME-TDLHAVIRAN---ILEPV----------------------------HKQYVVYQLIKVIKYLHSGG  129 (388)
T ss_dssp             TSSCEEEEEECCS-EEHHHHHHHT---CCCHH----------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEecccC-cCHHHHHHcC---CCCHH----------------------------HHHHHHHHHHHHHHHHHhCC
Confidence              47899999996 6999888653   22222                            22467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+|+.+..........                                        
T Consensus       130 ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~----------------------------------------  169 (388)
T 3oz6_A          130 LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNI----------------------------------------  169 (388)
T ss_dssp             EECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCG----------------------------------------
T ss_pred             EEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccc----------------------------------------
Confidence            9999999999999999999999999996543211100000                                        


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                      ....                 .................+||+.|+|||++.+ ..|+.++|||||||++|||++|++||.
T Consensus       170 ~~~~-----------------~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          170 PLSI-----------------NENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             GGCC-----------------C---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccc-----------------cccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            0000                 0000000011123455689999999999987 568999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCC----------------------------CCCCchhH-----------HhhhhHHHHHHH
Q 010140          399 GENNEKTLINILKKPLTFPRI----------------------------GVSSSKEF-----------EEVVKLQDLISK  439 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~----------------------------~~~~~~~~-----------~~~~~l~dLi~~  439 (517)
                      +.+..+.+..+..... .|..                            .......+           ....++.+||.+
T Consensus       233 ~~~~~~~~~~i~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~  311 (388)
T 3oz6_A          233 GSSTMNQLERIIGVID-FPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDK  311 (388)
T ss_dssp             CSSHHHHHHHHHHHHC-CCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcC-CCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHH
Confidence            9988887777753211 1100                            00000000           123468999999


Q ss_pred             hccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||+.||++|||+.    |+|+||||+..
T Consensus       312 ~L~~dP~~R~t~~----e~l~Hp~~~~~  335 (388)
T 3oz6_A          312 LLQFNPNKRISAN----DALKHPFVSIF  335 (388)
T ss_dssp             HCCSSGGGSCCHH----HHTTSTTTTTT
T ss_pred             hhccCcccCCCHH----HHhCCHHHHHh
Confidence            9999999999998    99999998764

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=4e-49  Score=399.22  Aligned_cols=256  Identities=31%  Similarity=0.471  Sum_probs=200.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|+++.     +++.||||++....    .....+.+|+.+++.++||||+++++++.+.
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   88 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKL-----TKELVAVKYIERGA----AIDENVQREIINHRSLRHPNIVRFKEVILTP   88 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETT-----TCCEEEEEEEESST----TSCHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECC-----CCcEEEEEEEecCc----cccHHHHHHHHHHHhCCCCCCCcEEEEEeeC
Confidence            45789999999999999999999986     67899999997542    2224566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||+||+|.+++...  ..++...+                            +.++.||+.||+|||++||+
T Consensus        89 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~----------------------------~~i~~ql~~~L~~LH~~~iv  138 (361)
T 3uc3_A           89 THLAIIMEYASGGELYERICNA--GRFSEDEA----------------------------RFFFQQLLSGVSYCHSMQIC  138 (361)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEEeCCCCCHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCcc
Confidence            9999999999999999988654  22333322                            47789999999999999999


Q ss_pred             eccCCCCceEEccCCc--EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGH--IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       242 HrDLKp~NILl~~~~~--vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||+|||++.++.  +||+|||+++....                                                
T Consensus       139 H~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~------------------------------------------------  170 (361)
T 3uc3_A          139 HRDLKLENTLLDGSPAPRLKICDFGYSKSSVL------------------------------------------------  170 (361)
T ss_dssp             SCCCCGGGEEECSSSSCCEEECCCCCC-----------------------------------------------------
T ss_pred             cCCCCHHHEEEcCCCCceEEEeecCccccccc------------------------------------------------
Confidence            9999999999987765  99999999842110                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCcc-chHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSA-VDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~-~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     .......+||+.|+|||++.+..+..+ +|||||||++|+|++|+.||.
T Consensus       171 -------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~  219 (361)
T 3uc3_A          171 -------------------------------HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFE  219 (361)
T ss_dssp             -----------------------------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             -------------------------------cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCC
Confidence                                           011223469999999999998887655 899999999999999999998


Q ss_pred             CCCh----HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENN----EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +...    ...+..+......+|.....       +.++.+||.+||+.||++|||+.    |+++||||..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------s~~~~~li~~~L~~dP~~Rps~~----ell~hp~f~~  280 (361)
T 3uc3_A          220 DPEEPRDYRKTIQRILSVKYSIPDDIRI-------SPECCHLISRIFVADPATRISIP----EIKTHSWFLK  280 (361)
T ss_dssp             ----CCCHHHHHHHHHTTCCCCCTTSCC-------CHHHHHHHHHHSCSCTTTSCCHH----HHHTSHHHHT
T ss_pred             CCccHHHHHHHHHHHhcCCCCCCCcCCC-------CHHHHHHHHHHccCChhHCcCHH----HHHhCcchhc
Confidence            7543    44555666665555543221       22589999999999999999998    9999999953

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.8e-49  Score=401.89  Aligned_cols=261  Identities=29%  Similarity=0.450  Sum_probs=209.1

Q ss_pred             CceE--EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           85 HFRL--LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        85 ~y~i--~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .|.+  .+.||+|+||.||+|++..     +++.||+|++.....   .....+.+|+.+|++++||||+++++++...+
T Consensus        88 ~~~~~~~~~lG~G~~g~Vy~a~~~~-----~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~  159 (373)
T 2x4f_A           88 FYTVSKTEILGGGRFGQVHKCEETA-----TGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKN  159 (373)
T ss_dssp             TEEEEEEEECC-----CEEEEEETT-----TCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ceeeecceEEecCcCEEEEEEEEcC-----CCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            3444  6789999999999999876     678999999976432   22346677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++.... ..++..                            .++.++.||+.||+|||++||+|
T Consensus       160 ~~~lv~E~~~~~~L~~~l~~~~-~~l~~~----------------------------~~~~i~~qi~~aL~~LH~~~ivH  210 (373)
T 2x4f_A          160 DIVLVMEYVDGGELFDRIIDES-YNLTEL----------------------------DTILFMKQICEGIRHMHQMYILH  210 (373)
T ss_dssp             EEEEEEECCTTCEEHHHHHHTG-GGCCHH----------------------------HHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCccc
Confidence            9999999999999998886531 112221                            22367899999999999999999


Q ss_pred             ccCCCCceEE--ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLV--REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl--~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+|||+  +.++.+||+|||+++.+...                                                
T Consensus       211 ~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~------------------------------------------------  242 (373)
T 2x4f_A          211 LDLKPENILCVNRDAKQIKIIDFGLARRYKPR------------------------------------------------  242 (373)
T ss_dssp             CCCCGGGEEEEETTTTEEEECCCSSCEECCTT------------------------------------------------
T ss_pred             ccCCHHHEEEecCCCCcEEEEeCCCceecCCc------------------------------------------------
Confidence            9999999999  56789999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.
T Consensus       243 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  291 (373)
T 2x4f_A          243 -------------------------------EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD  291 (373)
T ss_dssp             -------------------------------CBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             -------------------------------cccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence                                           0112346999999999999888999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +..+.+..+......++......     ...++++||.+||+.||.+||++.    |+++||||++..|.
T Consensus       292 ~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~li~~~L~~dp~~Rps~~----e~l~hp~~~~~~~~  352 (373)
T 2x4f_A          292 NDAETLNNILACRWDLEDEEFQD-----ISEEAKEFISKLLIKEKSWRISAS----EALKHPWLSDHKLH  352 (373)
T ss_dssp             SHHHHHHHHHHTCCCSCSGGGTT-----SCHHHHHHHHTTSCSSGGGSCCHH----HHHHSHHHHCHHHH
T ss_pred             CHHHHHHHHHhccCCCChhhhcc-----CCHHHHHHHHHHcCCChhhCCCHH----HHhcCcCcCCCchh
Confidence            98888888887765544322211     223589999999999999999998    99999999987664

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.4e-49  Score=382.97  Aligned_cols=262  Identities=28%  Similarity=0.518  Sum_probs=191.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|++..     +++.||||++............++.+|+.+++.++||||+++++++.+.
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   83 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIH-----TGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDS   83 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS
T ss_pred             ccccceeeeeecCCCceEEEEEEEcc-----CCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC
Confidence            34789999999999999999999876     6789999999876554444457788899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++.... ..++...                            ++.++.||+.||+|||++||+
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~  134 (278)
T 3cok_A           84 NYVYLVLEMCHNGEMNRYLKNRV-KPFSENE----------------------------ARHFMHQIITGMLYLHSHGIL  134 (278)
T ss_dssp             SEEEEEEECCTTEEHHHHHHTCS-SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CeEEEEEecCCCCcHHHHHhhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCee
Confidence            99999999999999999887532 2222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++......                                                 
T Consensus       135 H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~-------------------------------------------------  165 (278)
T 3cok_A          135 HRDLTLSNLLLTRNMNIKIADFGLATQLKMP-------------------------------------------------  165 (278)
T ss_dssp             CSSCCGGGEEECTTCCEEECCCTTCEECC---------------------------------------------------
T ss_pred             cCCCCHHHEEEcCCCCEEEEeecceeeccCC-------------------------------------------------
Confidence            9999999999999999999999998433210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ........||+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       166 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  216 (278)
T 3cok_A          166 -----------------------------HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDT  216 (278)
T ss_dssp             -------------------------------------------------------CTHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred             -----------------------------CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChh
Confidence                                         001123468999999999998889999999999999999999999999877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ....+..+.......|..         ...++.+||.+||+.||++||++.    ++++||||....
T Consensus       217 ~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~~l~~dp~~Rps~~----~~l~h~~~~~~~  270 (278)
T 3cok_A          217 VKNTLNKVVLADYEMPSF---------LSIEAKDLIHQLLRRNPADRLSLS----SVLDHPFMSRNS  270 (278)
T ss_dssp             CC-----CCSSCCCCCTT---------SCHHHHHHHHHHSCSSGGGSCCHH----HHTTSTTTC---
T ss_pred             HHHHHHHHhhcccCCccc---------cCHHHHHHHHHHcccCHhhCCCHH----HHhcCccccCCC
Confidence            665555544433333221         123589999999999999999998    999999998643

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=5.5e-49  Score=392.54  Aligned_cols=256  Identities=28%  Similarity=0.462  Sum_probs=189.3

Q ss_pred             CCceEE---eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeee
Q 010140           84 DHFRLL---RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFE  159 (517)
Q Consensus        84 ~~y~i~---~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~  159 (517)
                      ++|++.   +.||+|+||.||+|+++.     +++.||||++.+..      ...+.+|+.+++.+. ||||+++++++.
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~------~~~~~~e~~~l~~l~~h~niv~~~~~~~   76 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKK-----SNQAFAVKIISKRM------EANTQKEITALKLCEGHPNIVKLHEVFH   76 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETT-----TCCEEEEEEEEGGG------HHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             hccccccCCCccccCCCeEEEEEEECC-----CCCEEEEEEEChhh------hhhHHHHHHHHHHhcCCCCeeEEEEEEE
Confidence            356665   789999999999999986     67899999997642      234556999999996 999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +....|+|||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||++|
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~----------------------------~~i~~qi~~~l~~LH~~~  126 (325)
T 3kn6_A           77 DQLHTFLVMELLNGGELFERIKKK--KHFSETEA----------------------------SYIMRKLVSAVSHMHDVG  126 (325)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998764  23333322                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      |+||||||+|||++.++   .+||+|||+++.....                                            
T Consensus       127 ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~--------------------------------------------  162 (325)
T 3kn6_A          127 VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD--------------------------------------------  162 (325)
T ss_dssp             EECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------------------------------------------
T ss_pred             CeecCCCHHHEEEecCCCcccEEEeccccceecCCC--------------------------------------------
Confidence            99999999999998766   8999999998432210                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       163 ----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p  208 (325)
T 3kn6_A          163 ----------------------------------NQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVP  208 (325)
T ss_dssp             -------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             ----------------------------------CCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCC
Confidence                                              0112334689999999999999999999999999999999999999


Q ss_pred             CCCCCh-------HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          397 FKGENN-------EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       397 f~~~~~-------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      |.+.+.       .+.+..+..+...++...     ....+.++++||.+||+.||.+||++.    |+++||||++.
T Consensus       209 f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~s~~~~~li~~~L~~dP~~Rpt~~----ell~h~w~~~~  277 (325)
T 3kn6_A          209 FQSHDRSLTCTSAVEIMKKIKKGDFSFEGEA-----WKNVSQEAKDLIQGLLTVDPNKRLKMS----GLRYNEWLQDG  277 (325)
T ss_dssp             TC-------CCCHHHHHHHHTTTCCCCCSHH-----HHTSCHHHHHHHHHHHCCCTTTCCCTT----TSTTCGGGCTT
T ss_pred             CCCCccccccccHHHHHHHHHcCCCCCCccc-----ccCCCHHHHHHHHHHCCCChhHCCCHH----HHhcChhhccC
Confidence            986432       456666766655443211     112234689999999999999999998    99999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=8e-50  Score=420.45  Aligned_cols=266  Identities=33%  Similarity=0.484  Sum_probs=217.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++.+.||+|+||.||+|+++.     +++.||||++.+...........+.+|+.+|+.++||||+++++++.+.+
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   99 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKI-----TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG   99 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             cCceEEeeEEecCCCEEEEEEEECC-----CCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            4679999999999999999999886     67899999986543221233456777999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+|||||.||+|.+++...  ..+++..                            ++.++.||+.||+|||++||+|
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~ivH  149 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIISR--KRFSEVD----------------------------AARIIRQVLSGITYMHKNKIVH  149 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--SCCBHHH----------------------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEEecCCCCCHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeee
Confidence            999999999999999988764  2233322                            2367899999999999999999


Q ss_pred             ccCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          243 RDLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       243 rDLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||+|||+   +.++.+||+|||+++.+...                                               
T Consensus       150 ~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-----------------------------------------------  182 (484)
T 3nyv_A          150 RDLKPENLLLESKSKDANIRIIDFGLSTHFEAS-----------------------------------------------  182 (484)
T ss_dssp             SCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC-----------------------------------------------
T ss_pred             CCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc-----------------------------------------------
Confidence            9999999999   56789999999998543210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      ......+||+.|+|||++.+ .|+.++|||||||++|+|++|.+||.+
T Consensus       183 --------------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~  229 (484)
T 3nyv_A          183 --------------------------------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNG  229 (484)
T ss_dssp             --------------------------------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             --------------------------------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCC
Confidence                                            01123469999999999987 599999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+..+.+..+..+...++.....     ..+..+++||.+||+.||.+|||+.    |+|+||||+...+..+
T Consensus       230 ~~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dp~~R~s~~----e~l~h~~~~~~~~~~~  293 (484)
T 3nyv_A          230 ANEYDILKKVEKGKYTFELPQWK-----KVSESAKDLIRKMLTYVPSMRISAR----DALDHEWIQTYTKEQI  293 (484)
T ss_dssp             SSHHHHHHHHHHCCCCCCSGGGG-----GSCHHHHHHHHHHTCSSGGGSCCHH----HHHTSHHHHHHTC---
T ss_pred             CCHHHHHHHHHcCCCCCCCcccc-----cCCHHHHHHHHHHCCCChhHCcCHH----HHhhChhhcccccccc
Confidence            99999999988876655432211     2234689999999999999999998    9999999987655433

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=8e-49  Score=384.02  Aligned_cols=258  Identities=29%  Similarity=0.471  Sum_probs=207.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|.+.+.||+|+||.||+|+++.     +++.+|+|++.....  ......+.+|+.+|+.++||||+++++++.+...
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   94 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERS-----SGLERVIKTINKDRS--QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHN   94 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEGGGC--CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             hheeecceeccCCCeEEEEEEEcc-----CCceEEEEEeecccc--chhHHHHHHHHHHHHhCCCchHHhHHHheecCCe
Confidence            679999999999999999999876     678899999876531  1234567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCC--CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          164 SCLVMEYCPGGDLYAARQRQP--GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      .|+||||+++|+|.+++....  ...++..                            .++.++.||+.||+|||++||+
T Consensus        95 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~i~~qi~~~L~~LH~~~iv  146 (285)
T 3is5_A           95 MYIVMETCEGGELLERIVSAQARGKALSEG----------------------------YVAELMKQMMNALAYFHSQHVV  146 (285)
T ss_dssp             EEEEECCCSCCBHHHHHHHHHHHTCCCCHH----------------------------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEEeCCCCcHHHHHHhhhhcccCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCEE
Confidence            999999999999999885431  1222222                            2347889999999999999999


Q ss_pred             eccCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||+   +.++.+||+|||+++.+...                                              
T Consensus       147 H~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~----------------------------------------------  180 (285)
T 3is5_A          147 HKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD----------------------------------------------  180 (285)
T ss_dssp             CCCCSGGGEEESSSSTTCCEEECCCCCCCC--------------------------------------------------
T ss_pred             ECCCCHHHEEEecCCCCCCEEEEeeecceecCCc----------------------------------------------
Confidence            99999999999   45678999999998432210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                       .......||+.|+|||++.+ .++.++|||||||++|+|++|..||.
T Consensus       181 ---------------------------------~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~il~~ll~g~~pf~  226 (285)
T 3is5_A          181 ---------------------------------EHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFLLTGCLPFT  226 (285)
T ss_dssp             ---------------------------------------CTTGGGCCHHHHTT-CCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ---------------------------------ccCcCcccccCcCChHHhcc-CCCcccCeehHHHHHHHHHhCCCCCC
Confidence                                             01123469999999999864 58999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +....+....+......++.......      .++.+||.+||+.||++||++.    |+++||||+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~li~~~L~~dP~~Rps~~----e~l~hp~f~~  284 (285)
T 3is5_A          227 GTSLEEVQQKATYKEPNYAVECRPLT------PQAVDLLKQMLTKDPERRPSAA----QVLHHEWFKQ  284 (285)
T ss_dssp             CSSHHHHHHHHHHCCCCCCC--CCCC------HHHHHHHHHHTCSCTTTSCCHH----HHHTSGGGGC
T ss_pred             CCCHHHHHhhhccCCcccccccCcCC------HHHHHHHHHHccCChhhCcCHH----HHhcCHHhhc
Confidence            98888777777665544443322222      2489999999999999999998    9999999985

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.4e-48  Score=385.25  Aligned_cols=271  Identities=24%  Similarity=0.339  Sum_probs=205.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++...... ......+.+|+.+++.++||||+++++++.+.+
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   75 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRD-----TGQIVAIKKFLESEDD-PVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR   75 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             cccceEeeEEeecCCeEEEEEEeCC-----CCcEEEEEEeeccccc-hHHHHHHHHHHHHHHhCCCCCccchhheeecCC
Confidence            4789999999999999999999986     6789999988544221 233456677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++++|..++...  ..++...                            ++.++.||+.||+|||++||+|
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~i~~~l~~~l~~lH~~~ivH  125 (311)
T 4agu_A           76 RLHLVFEYCDHTVLHELDRYQ--RGVPEHL----------------------------VKSITWQTLQAVNFCHKHNCIH  125 (311)
T ss_dssp             EEEEEEECCSEEHHHHHHHTS--SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEEeCCCchHHHHHhhh--cCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCCcC
Confidence            999999999999998877654  2233222                            2467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++.......                                                 
T Consensus       126 ~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------------------------------------------------  156 (311)
T 4agu_A          126 RDVKPENILITKHSVIKLCDFGFARLLTGPS-------------------------------------------------  156 (311)
T ss_dssp             CCCSGGGEEECTTSCEEECCCTTCEECC----------------------------------------------------
T ss_pred             CCCChhhEEEcCCCCEEEeeCCCchhccCcc-------------------------------------------------
Confidence            9999999999999999999999984432100                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ......+||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+..
T Consensus       157 -----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  207 (311)
T 4agu_A          157 -----------------------------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS  207 (311)
T ss_dssp             --------------------------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             -----------------------------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence                                         01123468999999999987 558999999999999999999999999988


Q ss_pred             hHHHHHHHhcC-------------------CCCCCCCCCCCchh---HHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          402 NEKTLINILKK-------------------PLTFPRIGVSSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       402 ~~~~~~~i~~~-------------------~~~~p~~~~~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      ..+....+...                   ....+.........   ...+.++.+||.+||+.||.+|||+.    |++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----ell  283 (311)
T 4agu_A          208 DVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCE----QLL  283 (311)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHH----HHH
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHH----HHh
Confidence            77665544321                   01111111110000   01233589999999999999999998    999


Q ss_pred             cCCCcCCCCccc
Q 010140          460 RHEFFKGINWAL  471 (517)
Q Consensus       460 ~hp~f~~~~~~~  471 (517)
                      +||||+++.|..
T Consensus       284 ~hp~f~~~~~~~  295 (311)
T 4agu_A          284 HHPYFENIREIE  295 (311)
T ss_dssp             TSGGGTTCC---
T ss_pred             cChHHHhccCHH
Confidence            999999988753

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=4.6e-48  Score=380.67  Aligned_cols=270  Identities=29%  Similarity=0.419  Sum_probs=217.1

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH------HHHHHHHhHHHHHHHHHHhcC-CCCccce
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA------LAIRKKLHRADMEKVILTMLD-HPFLPTL  154 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~------~~~~~~~~~~~~E~~il~~l~-HpnIv~l  154 (517)
                      ..++|++.+.||+|+||.||+|+++.     +++.||||++....      .......+.+.+|+.+++++. ||||+++
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~   89 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKP-----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQL   89 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcC-----cCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeee
Confidence            35789999999999999999999876     67899999986431      122344566778999999995 9999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      ++++..++..|+||||+++++|.+++...  ..++...                            +..++.||+.||.|
T Consensus        90 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~~l~~  139 (298)
T 1phk_A           90 KDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKE----------------------------TRKIMRALLEVICA  139 (298)
T ss_dssp             EEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             eeeeccCCeEEEEEeccCCCcHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence            99999999999999999999999998763  2222222                            23678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.+||+|||++......                                          
T Consensus       140 lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~------------------------------------------  177 (298)
T 1phk_A          140 LHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG------------------------------------------  177 (298)
T ss_dssp             HHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT------------------------------------------
T ss_pred             HHHCCcccCCCCcceEEEcCCCcEEEecccchhhcCCC------------------------------------------
Confidence            99999999999999999999999999999998433210                                          


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc------CCCCCccchHHHHHHHHH
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS------GQGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~------~~~~~~~~DiWSlGvil~  388 (517)
                                                           .......||+.|+|||++.      ...++.++|||||||++|
T Consensus       178 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~  220 (298)
T 1phk_A          178 -------------------------------------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMY  220 (298)
T ss_dssp             -------------------------------------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHH
T ss_pred             -------------------------------------cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHH
Confidence                                                 0112346899999999985      445889999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      +|++|..||.+.+.......+......++.....     ..+..+.+||.+||+.||.+||++.    |+++||||++..
T Consensus       221 ~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~----~ll~h~~~~~~~  291 (298)
T 1phk_A          221 TLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWD-----DYSDTVKDLVSRFLVVQPQKRYTAE----EALAHPFFQQYV  291 (298)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGG-----GSCHHHHHHHHHHCCSSGGGSCCHH----HHTTSGGGCTTC
T ss_pred             HHHHCCCCCcCccHHHHHHHHhcCCcccCccccc-----ccCHHHHHHHHHHccCCcccCCCHH----HHHhChHhhhcc
Confidence            9999999999988888888887766554432211     1223589999999999999999998    999999999998


Q ss_pred             cccccC
Q 010140          469 WALIRS  474 (517)
Q Consensus       469 ~~~~~~  474 (517)
                      |+.++.
T Consensus       292 ~~~~~~  297 (298)
T 1phk_A          292 VEEVRH  297 (298)
T ss_dssp             ------
T ss_pred             chhhcc
Confidence            876653

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=5.5e-49  Score=414.94  Aligned_cols=262  Identities=30%  Similarity=0.491  Sum_probs=211.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     ++..||||++.+.... ......+.+|+.+|+.++||||++++++|.+...
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  110 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKV-----THVERAIKIIRKTSVS-TSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRN  110 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETT-----TCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECC-----CCcEEEEEEEeccccC-chHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE
Confidence            469999999999999999999886     6788999999865432 2234567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+|||||+||+|.+++...  ..++...                            ++.++.||+.||+|||++||+||
T Consensus       111 ~~lv~e~~~~g~L~~~~~~~--~~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~ivH~  160 (494)
T 3lij_A          111 YYLVMECYKGGELFDEIIHR--MKFNEVD----------------------------AAVIIKQVLSGVTYLHKHNIVHR  160 (494)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEECS
T ss_pred             EEEEEecCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCceec
Confidence            99999999999999888654  2233222                            23678999999999999999999


Q ss_pred             cCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||++.   ++.+||+|||+++.+...                                                
T Consensus       161 Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~------------------------------------------------  192 (494)
T 3lij_A          161 DLKPENLLLESKEKDALIKIVDFGLSAVFENQ------------------------------------------------  192 (494)
T ss_dssp             CCSGGGEEESCSSTTCCEEECCCTTCEECBTT------------------------------------------------
T ss_pred             cCChhhEEEeCCCCCCcEEEEECCCCeECCCC------------------------------------------------
Confidence            99999999976   455999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||++.+ .|+.++|||||||++|+|++|.+||.+.
T Consensus       193 -------------------------------~~~~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  240 (494)
T 3lij_A          193 -------------------------------KKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQ  240 (494)
T ss_dssp             -------------------------------BCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------ccccccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence                                           11234579999999999875 5999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +..+.+..+......++......     .+..+++||.+||+.||.+|||+.    |+|+||||+...+.
T Consensus       241 ~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dp~~R~s~~----e~l~hp~~~~~~~~  301 (494)
T 3lij_A          241 TDQEILRKVEKGKYTFDSPEWKN-----VSEGAKDLIKQMLQFDSQRRISAQ----QALEHPWIKEMCSK  301 (494)
T ss_dssp             SHHHHHHHHHHTCCCCCSGGGTT-----SCHHHHHHHHHHTCSSTTTSCCHH----HHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCchhccc-----CCHHHHHHHHHHCCCChhhCccHH----HHhcCcccccCccc
Confidence            99999999988776665433221     223589999999999999999998    99999999875443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-48  Score=391.87  Aligned_cols=278  Identities=27%  Similarity=0.335  Sum_probs=209.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH--HHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI--RKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++.......  ......+.+|+.+++.++||||+++++++.
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   82 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKN-----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG   82 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSS-----CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECC-----CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe
Confidence            34789999999999999999999876     67899999997543221  122356778999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+..|+||||+++ +|..++.... ..++....                            +.++.||+.||+|||++|
T Consensus        83 ~~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~----------------------------~~~~~qi~~~l~~lH~~~  132 (346)
T 1ua2_A           83 HKSNISLVFDFMET-DLEVIIKDNS-LVLTPSHI----------------------------KAYMLMTLQGLEYLHQHW  132 (346)
T ss_dssp             CTTCCEEEEECCSE-EHHHHHTTCC-SSCCSSHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             eCCceEEEEEcCCC-CHHHHHHhcC-cCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            99999999999965 8888776532 22333222                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.+|.+||+|||+++.....                                               
T Consensus       133 ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~-----------------------------------------------  165 (346)
T 1ua2_A          133 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP-----------------------------------------------  165 (346)
T ss_dssp             CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC-----------------------------------------------
T ss_pred             EECCCCCHHHEEEcCCCCEEEEecccceeccCC-----------------------------------------------
Confidence            999999999999999999999999998543210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     .......+||+.|+|||++.+. .++.++|||||||++|+|++|.+||.
T Consensus       166 -------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~  214 (346)
T 1ua2_A          166 -------------------------------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLP  214 (346)
T ss_dssp             -------------------------------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             -------------------------------cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence                                           0112334789999999999765 48999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCC-----CCCCCC----------CCch--h--HHhhhhHHHHHHHhccCCcccccCCCCChHHhh
Q 010140          399 GENNEKTLINILKKPLT-----FPRIGV----------SSSK--E--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK  459 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~-----~p~~~~----------~~~~--~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell  459 (517)
                      +.+..+.+.++......     ++....          ....  .  .....++.+||.+||+.||.+|||+.    |++
T Consensus       215 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----ell  290 (346)
T 1ua2_A          215 GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITAT----QAL  290 (346)
T ss_dssp             CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHH----HHH
T ss_pred             CCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHH----HHh
Confidence            99888877777542111     111000          0000  0  01224689999999999999999998    999


Q ss_pred             cCCCcCCCCcccccCCC
Q 010140          460 RHEFFKGINWALIRSIK  476 (517)
Q Consensus       460 ~hp~f~~~~~~~~~~~~  476 (517)
                      +||||++..|.......
T Consensus       291 ~h~~f~~~~~~~~~~~~  307 (346)
T 1ua2_A          291 KMKYFSNRPGPTPGCQL  307 (346)
T ss_dssp             TSGGGTSSSCCCCSSSS
T ss_pred             cChhhhcCCCCCCcccC
Confidence            99999988776554433

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.4e-48  Score=382.11  Aligned_cols=260  Identities=28%  Similarity=0.454  Sum_probs=217.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+.+.||+|+||.||+|++..     +++.||+|++.............+.+|+.+++.++||||+++++++.+.
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   87 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDAD-----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN   87 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEEEEeecCCEEEEEEEECC-----CCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC
Confidence            45789999999999999999999886     6789999998765332234456677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++....  .++...                            ++.++.||+.||+|||++||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~i~  137 (294)
T 2rku_A           88 DFVFVVLELCRRRSLLELHKRRK--ALTEPE----------------------------ARYYLRQIVLGCQYLHRNRVI  137 (294)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CEEEEEEecCCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999886542  222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++......                                                 
T Consensus       138 H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-------------------------------------------------  168 (294)
T 2rku_A          138 HRDLKLGNLFLNEDLEVKIGDFGLATKVEYD-------------------------------------------------  168 (294)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECCST-------------------------------------------------
T ss_pred             ccCCChHhEEEcCCCCEEEEeccCceecccC-------------------------------------------------
Confidence            9999999999999999999999998432210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ........||+.|+|||++.+..++.++|||||||++|+|++|..||.+..
T Consensus       169 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  219 (294)
T 2rku_A          169 -----------------------------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC  219 (294)
T ss_dssp             -----------------------------TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             -----------------------------ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         001123469999999999999889999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..+....+.......|...         ...+.+||.+||+.||++||++.    |+++||||.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~----~ll~~~~~~~~  272 (294)
T 2rku_A          220 LKETYLRIKKNEYSIPKHI---------NPVAASLIQKMLQTDPTARPTIN----ELLNDEFFTSG  272 (294)
T ss_dssp             HHHHHHHHHTTCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCGG----GGGGSHHHHTS
T ss_pred             HHHHHHHHhhccCCCcccc---------CHHHHHHHHHHcccChhhCcCHH----HHhhChheecC
Confidence            8888888877665554321         12489999999999999999998    99999999864

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.1e-48  Score=395.55  Aligned_cols=278  Identities=26%  Similarity=0.369  Sum_probs=207.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++...... ......+.+|+.+++.++||||+++++++...+
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   97 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAI-----LERNVAIKKLSRPFQN-QTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQK   97 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEECTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECC-----CCceEEEEEeccccCC-hHHHHHHHHHHHHHHhcCCCCccceEEeecccc
Confidence            4789999999999999999999876     6789999998653211 233456677999999999999999999997654


Q ss_pred             ------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 ------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                            ..|+|||||+ |+|.+++...    +...                            .++.++.||+.||+|||
T Consensus        98 ~~~~~~~~~lv~e~~~-~~l~~~~~~~----~~~~----------------------------~~~~i~~qi~~al~~lH  144 (371)
T 2xrw_A           98 SLEEFQDVYIVMELMD-ANLCQVIQME----LDHE----------------------------RMSYLLYQMLCGIKHLH  144 (371)
T ss_dssp             STTTCCEEEEEEECCS-EEHHHHHHSC----CCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ccccccceEEEEEcCC-CCHHHHHhhc----cCHH----------------------------HHHHHHHHHHHHHHHHH
Confidence                  7899999995 5888877531    2222                            22367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       145 ~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~---------------------------------------------  179 (371)
T 2xrw_A          145 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT---------------------------------------------  179 (371)
T ss_dssp             HTTCCCSCCCGGGEEECTTSCEEECCCCC---------------------------------------------------
T ss_pred             HCCeecccCCHHHEEEcCCCCEEEEEeeccccccc---------------------------------------------
Confidence            99999999999999999999999999999843221                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       180 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~p  225 (371)
T 2xrw_A          180 ----------------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL  225 (371)
T ss_dssp             --------------------------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCC
Confidence                                              0011234799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCC-------------------CCC------------CCCc--hhHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKKPLTFP-------------------RIG------------VSSS--KEFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p-------------------~~~------------~~~~--~~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+..+.+..+.......+                   ...            .+..  .......++++||.+||+.
T Consensus       226 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~  305 (371)
T 2xrw_A          226 FPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI  305 (371)
T ss_dssp             SCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcC
Confidence            999988887777765322110                   000            0000  0011245689999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN  482 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~~  482 (517)
                      ||.+|||+.    |+++||||+...........||.+|.
T Consensus       306 dP~~R~t~~----e~l~hp~~~~~~~~~~~~~~~~~~~~  340 (371)
T 2xrw_A          306 DASKRISVD----EALQHPYINVWYDPSEAEAPPPKIPD  340 (371)
T ss_dssp             SGGGSCCHH----HHHHSHHHHTTCCHHHHTCCCCCCCT
T ss_pred             ChhhCCCHH----HHhCCcchhhhcCccccCCCCCCCCC
Confidence            999999998    99999999864433334444554443

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2e-48  Score=387.84  Aligned_cols=256  Identities=26%  Similarity=0.420  Sum_probs=210.4

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|...+.||+|+||.||+|+++.     +++.||||++.....   ...+.+.+|+.+++.++||||+++++++...+..
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~-----~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  117 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKH-----SGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEEL  117 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEETTTC---CSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred             hhhccEEeccCCCeEEEEEEECC-----CCcEEEEEEEeccch---hHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEE
Confidence            48889999999999999999876     678999999865421   2344567799999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |+||||++||+|.+++...   .++...                            +..++.||+.||+|||++||+|||
T Consensus       118 ~lv~e~~~~~~L~~~l~~~---~l~~~~----------------------------~~~i~~qi~~~L~~LH~~~ivH~D  166 (321)
T 2c30_A          118 WVLMEFLQGGALTDIVSQV---RLNEEQ----------------------------IATVCEAVLQALAYLHAQGVIHRD  166 (321)
T ss_dssp             EEEECCCCSCBHHHHHTTC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             EEEEecCCCCCHHHHHHhc---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeecCC
Confidence            9999999999999987642   222222                            236789999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+|||++.++.+||+|||++......                                                    
T Consensus       167 lkp~NIll~~~~~~kl~Dfg~~~~~~~~----------------------------------------------------  194 (321)
T 2c30_A          167 IKSDSILLTLDGRVKLSDFGFCAQISKD----------------------------------------------------  194 (321)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECCSS----------------------------------------------------
T ss_pred             CCHHHEEECCCCcEEEeeeeeeeecccC----------------------------------------------------
Confidence            9999999999999999999998443210                                                    


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                                .......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+....+
T Consensus       195 --------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~  248 (321)
T 2c30_A          195 --------------------------VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ  248 (321)
T ss_dssp             --------------------------SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             --------------------------ccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                      001234579999999999999889999999999999999999999999988887


Q ss_pred             HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          405 TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .+..+...........      ......+.+||.+||+.||++||++.    |+++||||...
T Consensus       249 ~~~~~~~~~~~~~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~----ell~hp~~~~~  301 (321)
T 2c30_A          249 AMKRLRDSPPPKLKNS------HKVSPVLRDFLERMLVRDPQERATAQ----ELLDHPFLLQT  301 (321)
T ss_dssp             HHHHHHHSSCCCCTTG------GGSCHHHHHHHHHHSCSSTTTSCCHH----HHHTSGGGGGC
T ss_pred             HHHHHhcCCCCCcCcc------ccCCHHHHHHHHHHccCChhhCcCHH----HHhcChhhccC
Confidence            7777766543221111      11233589999999999999999998    99999999754

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-48  Score=384.96  Aligned_cols=270  Identities=27%  Similarity=0.430  Sum_probs=214.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhcCCCCccceeeee--e
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTMLDHPFLPTLYAEF--E  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~--~  159 (517)
                      .++|++++.||+|+||.||+|.+..     +++.||+|++....... ......+.+|+.+++.++||||+++++++  .
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   78 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSE-----TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNE   78 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTT-----TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC
T ss_pred             ccceeEeeEEecCCCeEEEEEEECC-----CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcC
Confidence            4789999999999999999999876     67899999998765432 23456778899999999999999999998  4


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +....|+||||++++ |.+++.......++....                            ..++.||+.||+|||++|
T Consensus        79 ~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~----------------------------~~~~~qi~~al~~LH~~~  129 (305)
T 2wtk_C           79 EKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQA----------------------------HGYFCQLIDGLEYLHSQG  129 (305)
T ss_dssp             ---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEehhccCC-HHHHHHhCcccccCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            566899999999765 777777654444443332                            367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||++........                                             
T Consensus       130 i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------  164 (305)
T 2wtk_C          130 IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAA---------------------------------------------  164 (305)
T ss_dssp             EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCS---------------------------------------------
T ss_pred             eeecCCCcccEEEcCCCcEEeeccccccccCcccc---------------------------------------------
Confidence            99999999999999999999999999854321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     ........||+.|+|||++.+..  ++.++|||||||++|+|++|..||
T Consensus       165 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~  213 (305)
T 2wtk_C          165 -------------------------------DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPF  213 (305)
T ss_dssp             -------------------------------SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             -------------------------------ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCC
Confidence                                           00112346899999999998754  378999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSI  475 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~  475 (517)
                      .+.+..+....+......++...         ...+.+||.+||+.||.+||++.    |+++||||+..........
T Consensus       214 ~~~~~~~~~~~i~~~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~----~ll~~~~~~~~~~~~~~~~  278 (305)
T 2wtk_C          214 EGDNIYKLFENIGKGSYAIPGDC---------GPPLSDLLKGMLEYEPAKRFSIR----QIRQHSWFRKKHPPAEAPV  278 (305)
T ss_dssp             CCSSHHHHHHHHHHCCCCCCSSS---------CHHHHHHHHHHTCSSTTTSCCHH----HHHHSHHHHSCCCC-CCCC
T ss_pred             CCchHHHHHHHHhcCCCCCCCcc---------CHHHHHHHHHHccCChhhCCCHH----HHhcCcccccCCCCcCCCC
Confidence            99888888888877765544321         12489999999999999999998    9999999998766544333

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.7e-48  Score=379.41  Aligned_cols=262  Identities=31%  Similarity=0.460  Sum_probs=211.6

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++.+.||+|+||.||+|++..     +++.||||++.............+.+|+.+++.++||||++++++
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~   79 (276)
T 2h6d_A            5 DGRVKIGHYVLGDTLGVGTFGKVKIGEHQL-----TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQV   79 (276)
T ss_dssp             --CCEETTEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cCcceeccEEEEeeecCCCCeEEEEEEECC-----CCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEE
Confidence            456677899999999999999999999876     678999999987655444556678889999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..|+||||+++++|.+++....  .++...                            ++.++.||+.||.|||+
T Consensus        80 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lH~  129 (276)
T 2h6d_A           80 ISTPTDFFMVMEYVSGGELFDYICKHG--RVEEME----------------------------ARRLFQQILSAVDYCHR  129 (276)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EecCCeEEEEEeccCCCcHHHHHhccC--CCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987642  222222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||++......                                             
T Consensus       130 ~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~---------------------------------------------  164 (276)
T 2h6d_A          130 HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG---------------------------------------------  164 (276)
T ss_dssp             HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----------------------------------------------
T ss_pred             CCCccCCCChhhEEECCCCCEEEeecccccccCCC---------------------------------------------
Confidence            99999999999999999999999999998432210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......||+.|+|||++.+..+ +.++|||||||++|+|++|..|
T Consensus       165 ----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  210 (276)
T 2h6d_A          165 ----------------------------------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLP  210 (276)
T ss_dssp             ----------------------------------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCC
Confidence                                              01123368999999999998765 6899999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |...........+.......|...         ...+.+||.+||+.||.+||++.    |+++||||+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~----~~l~h~~~~~  267 (276)
T 2h6d_A          211 FDDEHVPTLFKKIRGGVFYIPEYL---------NRSVATLLMHMLQVDPLKRATIK----DIREHEWFKQ  267 (276)
T ss_dssp             SCCSSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHH----HHHHSHHHHT
T ss_pred             CCCCcHHHHHHHhhcCcccCchhc---------CHHHHHHHHHHccCChhhCCCHH----HHHhChhhcc
Confidence            999888888777777655444321         12489999999999999999998    9999999975

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.6e-48  Score=403.70  Aligned_cols=263  Identities=26%  Similarity=0.395  Sum_probs=207.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc------CCCCcccee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML------DHPFLPTLY  155 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~  155 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++....    .....+.+|+.+++.+      +|+||++++
T Consensus        95 ~~~ry~~~~~LG~G~fg~V~~a~~~~-----~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~  165 (429)
T 3kvw_A           95 VAYRYEVLKVIGKGSFGQVVKAYDHK-----VHQHVALKMVRNEK----RFHRQAAEEIRILEHLRKQDKDNTMNVIHML  165 (429)
T ss_dssp             ETTTEEEEEEEEESSSEEEEEEEETT-----TTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEE
T ss_pred             ccCcEEEEEEcccCccEEEEEEEECC-----CCcEEEEEEECCcc----chHHHHHHHHHHHHHHhhccccCCcCEEEEE
Confidence            34689999999999999999999886     67899999997653    2234455688888776      578999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++...+.+|+||||+ +++|.+++.......+++..+                            +.++.||+.||+||
T Consensus       166 ~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~aL~~L  216 (429)
T 3kvw_A          166 ENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLV----------------------------RKFAHSILQCLDAL  216 (429)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             eecccCCeEEEEEecc-CCCHHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHHHHH
Confidence            9999999999999999 579999988765444444333                            37789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCc--EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGH--IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~--vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |++|||||||||+||||+.++.  +||+|||++....                                           
T Consensus       217 H~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~-------------------------------------------  253 (429)
T 3kvw_A          217 HKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH-------------------------------------------  253 (429)
T ss_dssp             HHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT-------------------------------------------
T ss_pred             HHCCeecCCCCHHHeEEccCCCcceEEeecccceecC-------------------------------------------
Confidence            9999999999999999999887  9999999983211                                           


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                            ......+||+.|+|||++.+..++.++|||||||++|||++|
T Consensus       254 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG  295 (429)
T 3kvw_A          254 --------------------------------------QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG  295 (429)
T ss_dssp             --------------------------------------CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhC
Confidence                                                  112345799999999999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCC--------------------CC------------------------CCCCchhHH-
Q 010140          394 TTPFKGENNEKTLINILKKPLTFP--------------------RI------------------------GVSSSKEFE-  428 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p--------------------~~------------------------~~~~~~~~~-  428 (517)
                      .+||.+.+..+.+..+.......+                    ..                        .......+. 
T Consensus       296 ~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (429)
T 3kvw_A          296 YPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGN  375 (429)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHh
Confidence            999999988777666553110000                    00                        000000010 


Q ss_pred             -----hhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          429 -----EVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       429 -----~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                           ....+.+||.+||++||++|||+.    |+|+||||+..
T Consensus       376 ~l~~~~~~~~~dli~~~L~~dP~~Rpta~----e~L~Hpw~~~~  415 (429)
T 3kvw_A          376 ALKGCDDPLFLDFLKQCLEWDPAVRMTPG----QALRHPWLRRR  415 (429)
T ss_dssp             HTTTCCCHHHHHHHHHHTCSSTTTSCCHH----HHHTSTTTC--
T ss_pred             hccccchHHHHHHHHHHCCCChhhCCCHH----HHhCChhhccC
Confidence                 124589999999999999999998    99999999863

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=2.8e-48  Score=394.32  Aligned_cols=279  Identities=19%  Similarity=0.236  Sum_probs=212.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCC--CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPM--VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~--~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +.+..++|++++.||+|+||.||+|++....  ....+..||||+++....  ......+.+|+.+|+.+ +||||++++
T Consensus        76 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpnIv~~~  153 (370)
T 2psq_A           76 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLL  153 (370)
T ss_dssp             TBCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCB--HHHHHHHHHHHHHHHHSCCCTTBCCEE
T ss_pred             ccccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcC--HHHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence            3466789999999999999999999986422  112557899999976421  23456778899999999 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++.+.+.+|+||||++||+|.+++............              ..............+..++.||+.||+||
T Consensus       154 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~qi~~aL~~L  219 (370)
T 2psq_A          154 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSY--------------DINRVPEEQMTFKDLVSCTYQLARGMEYL  219 (370)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTCCC-------------------------CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccc--------------cccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875422111000              00111122233444567899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.+|.+||+|||+++.......                                         
T Consensus       220 H~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-----------------------------------------  258 (370)
T 2psq_A          220 ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDY-----------------------------------------  258 (370)
T ss_dssp             HHTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCT-----------------------------------------
T ss_pred             HhCCeeccccchhhEEECCCCCEEEccccCCcccCcccc-----------------------------------------
Confidence            999999999999999999999999999999854321100                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........||+.|+|||++.+..++.++|||||||++|||++ |.
T Consensus       259 -----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~  303 (370)
T 2psq_A          259 -----------------------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG  303 (370)
T ss_dssp             -----------------------------------TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence                                               011223457899999999999999999999999999999999 99


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+....+.+..+..+.....  ...      ...++.+||.+||+.||.+||++.    |++++
T Consensus       304 ~p~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~l~~li~~~l~~dP~~Rpt~~----ell~~  358 (370)
T 2psq_A          304 SPYPGIPVEELFKLLKEGHRMDK--PAN------CTNELYMMMRDCWHAVPSQRPTFK----QLVED  358 (370)
T ss_dssp             CSSTTCCGGGHHHHHHTTCCCCC--CTT------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCC--CCC------CCHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            99999888777777665532211  111      122589999999999999999997    66653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=7.3e-49  Score=413.23  Aligned_cols=260  Identities=31%  Similarity=0.479  Sum_probs=214.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++.+.... ......+.+|+.+|+.++||||+++++++.+...
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   95 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRI-----TQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSS   95 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETT-----TCCEEEEEEEEHHHHB-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cceEEeEEEeecCCEEEEEEEECC-----CCCEEEEEEEeccccc-chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCE
Confidence            579999999999999999999886     6789999999765322 1234567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|+|||||+||+|.+++...  ..+++..                            ++.++.||+.||.|||++||+||
T Consensus        96 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~----------------------------~~~i~~qi~~al~~lH~~~ivH~  145 (486)
T 3mwu_A           96 FYIVGELYTGGELFDEIIKR--KRFSEHD----------------------------AARIIKQVFSGITYMHKHNIVHR  145 (486)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             EEEEEEcCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCeEec
Confidence            99999999999999888654  2233322                            24778999999999999999999


Q ss_pred             cCCCCceEEc---cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLVR---EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl~---~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||++   .++.+||+|||+++.+...                                                
T Consensus       146 Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~------------------------------------------------  177 (486)
T 3mwu_A          146 DLKPENILLESKEKDCDIKIIDFGLSTCFQQN------------------------------------------------  177 (486)
T ss_dssp             CCSGGGEEESSSSTTCCEEECSCSCTTTBCCC------------------------------------------------
T ss_pred             cCchHHEEEecCCCCCCEEEEECCcCeECCCC------------------------------------------------
Confidence            9999999995   4567999999998433210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||++.+. |+.++|||||||++|+|++|.+||.+.
T Consensus       178 -------------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          178 -------------------------------TKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             -----------------------------------CCTTGGGGCCGGGGGSC-CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------CccCCCcCCCCCCCHHHhCCC-CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                                           112234799999999999874 999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      +..+.+..+..+...++.....     ..+.++++||.+||+.||.+|||+.    |+|+||||+...
T Consensus       226 ~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dp~~R~t~~----~~l~hp~~~~~~  284 (486)
T 3mwu_A          226 NEYDILKRVETGKYAFDLPQWR-----TISDDAKDLIRKMLTFHPSLRITAT----QCLEHPWIQKYS  284 (486)
T ss_dssp             SHHHHHHHHHHTCCCSCSGGGG-----GSCHHHHHHHHHHTCSSTTTSCCHH----HHHHCHHHHHTC
T ss_pred             CHHHHHHHHHhCCCCCCCcccC-----CCCHHHHHHHHHHcCCChhhCcCHH----HHhcCHhhccCc
Confidence            9999988888876655432211     2234689999999999999999998    999999998654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.1e-48  Score=390.02  Aligned_cols=260  Identities=28%  Similarity=0.458  Sum_probs=217.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|.+++.||+|+||.||+|++..     +++.||+|++.............+.+|+.+++.++||||+++++++.+.
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  113 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDAD-----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN  113 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            34789999999999999999999886     6789999998765332234456677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++...  ..+....                            ++.++.||+.||+|||++||+
T Consensus       114 ~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~----------------------------~~~i~~qi~~aL~~LH~~~iv  163 (335)
T 2owb_A          114 DFVFVVLELCRRRSLLELHKRR--KALTEPE----------------------------ARYYLRQIVLGCQYLHRNRVI  163 (335)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHH--CSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CeEEEEEecCCCCCHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCCE
Confidence            9999999999999999988654  2232222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.....                                                 
T Consensus       164 H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  194 (335)
T 2owb_A          164 HRDLKLGNLFLNEDLEVKIGDFGLATKVEYD-------------------------------------------------  194 (335)
T ss_dssp             CSCCCGGGEEECTTCCEEECCCTTCEECCST-------------------------------------------------
T ss_pred             ecCCCchhEEEcCCCCEEEeeccCceecccC-------------------------------------------------
Confidence            9999999999999999999999998443210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ........||+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       195 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  245 (335)
T 2owb_A          195 -----------------------------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC  245 (335)
T ss_dssp             -----------------------------TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             -----------------------------cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC
Confidence                                         011123469999999999999889999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..+.+..+......++...         ...+.+||.+||+.||++||++.    |+++||||...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~dp~~Rps~~----ell~~~~~~~~  298 (335)
T 2owb_A          246 LKETYLRIKKNEYSIPKHI---------NPVAASLIQKMLQTDPTARPTIN----ELLNDEFFTSG  298 (335)
T ss_dssp             HHHHHHHHHHTCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCGG----GGGGSHHHHTS
T ss_pred             HHHHHHHHhcCCCCCCccC---------CHHHHHHHHHHccCChhHCcCHH----HHhcCccccCC
Confidence            8888877777665554321         12489999999999999999998    99999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.9e-48  Score=393.80  Aligned_cols=265  Identities=29%  Similarity=0.387  Sum_probs=202.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++..... ......++.+|+.+|+.++||||+++++++....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~   97 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGR-----TGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDE   97 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETT-----TCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCS
T ss_pred             cceEEEeEEeeecCCeEEEEEEECC-----CCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCC
Confidence            3689999999999999999999876     678999999854321 1234456778999999999999999999997653


Q ss_pred             ------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 ------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                            .+|+||||+ +++|.+++...   .++...                            ++.++.||+.||+|||
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~---~l~~~~----------------------------~~~~~~qi~~~L~~LH  145 (367)
T 1cm8_A           98 TLDDFTDFYLVMPFM-GTDLGKLMKHE---KLGEDR----------------------------IQFLVYQMLKGLRYIH  145 (367)
T ss_dssp             STTTCCCCEEEEECC-SEEHHHHHHHC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             ccccCceEEEEEecC-CCCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                  469999999 89999988763   233222                            2467899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       146 ~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~---------------------------------------------  180 (367)
T 1cm8_A          146 AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS---------------------------------------------  180 (367)
T ss_dssp             HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS---------------------------------------------
T ss_pred             HCCccccCcCHHHEEEcCCCCEEEEeeeccccccc---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.
T Consensus       181 ------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  224 (367)
T 1cm8_A          181 ------------------------------------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT  224 (367)
T ss_dssp             ------------------------------------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCC
Confidence                                                1234578999999999987 569999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCC--------------------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFP--------------------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p--------------------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+..+.+..+.......+                    .........  ......+.+||.+||+.||.+|||+. 
T Consensus       225 pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~-  303 (367)
T 1cm8_A          225 LFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG-  303 (367)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH-
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHH-
Confidence            9999888777766654211111                    000000000  01234589999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCCcc
Q 010140          454 GSVEIKRHEFFKGINWA  470 (517)
Q Consensus       454 ~~~ell~hp~f~~~~~~  470 (517)
                         |+|+||||+...+.
T Consensus       304 ---e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          304 ---EALAHPYFESLHDT  317 (367)
T ss_dssp             ---HHHHSGGGTTTC--
T ss_pred             ---HHhcChHHHhhcCC
Confidence               99999999987654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.6e-48  Score=412.44  Aligned_cols=261  Identities=29%  Similarity=0.451  Sum_probs=212.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH----------HHHHhHHHHHHHHHHhcCCCCcc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI----------RKKLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~----------~~~~~~~~~E~~il~~l~HpnIv  152 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||++.+.....          ....+.+.+|+.+|+.++||||+
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv  109 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKN-----GHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNII  109 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETT-----TCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBC
T ss_pred             ccceEEEeEecccCCeEEEEEEECC-----CCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence            4789999999999999999999887     67899999997654321          12346677899999999999999


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ++++++.+...+|+|||||+||+|.+++...  ..+++..                            ++.++.||+.||
T Consensus       110 ~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~~l  159 (504)
T 3q5i_A          110 KLFDVFEDKKYFYLVTEFYEGGELFEQIINR--HKFDECD----------------------------AANIMKQILSGI  159 (504)
T ss_dssp             CEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHH----------------------------HHHHHHHHHHHH
T ss_pred             eEEEEEEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHH----------------------------HHHHHHHHHHHH
Confidence            9999999999999999999999999988654  2233322                            236789999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      +|||++||+||||||+|||++.++   .+||+|||+++.+...                                     
T Consensus       160 ~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-------------------------------------  202 (504)
T 3q5i_A          160 CYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD-------------------------------------  202 (504)
T ss_dssp             HHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTT-------------------------------------
T ss_pred             HHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCC-------------------------------------
Confidence            999999999999999999998776   6999999998543210                                     


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                                                                ......+||+.|+|||++.+ .++.++|||||||++|+
T Consensus       203 ------------------------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~  239 (504)
T 3q5i_A          203 ------------------------------------------YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYI  239 (504)
T ss_dssp             ------------------------------------------SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHH
T ss_pred             ------------------------------------------CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHH
Confidence                                                      11233479999999999875 59999999999999999


Q ss_pred             HhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          390 MLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       390 lltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      |++|.+||.+.+..+.+..+..+...++.....     ..+.++++||.+||+.||.+|||+.    |+|+||||+..
T Consensus       240 ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dp~~R~t~~----e~l~h~~~~~~  308 (504)
T 3q5i_A          240 LLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWK-----NISDEAKELIKLMLTYDYNKRCTAE----EALNSRWIKKY  308 (504)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHT-----TSCHHHHHHHHHHTCSSTTTSCCHH----HHHTSHHHHHT
T ss_pred             HHhCCCCCCCCCHHHHHHHHHcCCCCCCccccC-----CCCHHHHHHHHHHcCCChhHCCCHH----HHhcCHhhhhc
Confidence            999999999999999999988876655422111     1234689999999999999999998    99999999754

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=8.5e-48  Score=398.91  Aligned_cols=295  Identities=24%  Similarity=0.298  Sum_probs=203.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++..... ......++.+|+.+|+.++||||+++++++... 
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~   98 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKN-----TEKNVAIKKVNRMFE-DLIDCKRILREITILNRLKSDYIIRLYDLIIPDD   98 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETT-----TTEEEEEEEECSTTT-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECC-----CCcEEEEEEeCchhc-ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            4789999999999999999999887     678999999975321 123456777899999999999999999999766 


Q ss_pred             ----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 ----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                          ..+|+||||+ +|+|.+++...  ..++..                            .++.++.||+.||+|||+
T Consensus        99 ~~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~----------------------------~~~~i~~qil~aL~~LH~  147 (432)
T 3n9x_A           99 LLKFDELYIVLEIA-DSDLKKLFKTP--IFLTEE----------------------------HIKTILYNLLLGENFIHE  147 (432)
T ss_dssp             TTTCCCEEEEEECC-SEEHHHHHHSS--CCCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEecC-CcCHHHHHhcc--CCCCHH----------------------------HHHHHHHHHHHHHHHHHH
Confidence                5799999999 46999988753  223332                            234788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+||||+.++.+||+|||+++.............       ....                          
T Consensus       148 ~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~-------~~~~--------------------------  194 (432)
T 3n9x_A          148 SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVND-------LEEN--------------------------  194 (432)
T ss_dssp             TTEECCCCCGGGEEECTTCCEEECCCTTCEEC------------------------------------------------
T ss_pred             CCCCCCCCCHHHeEECCCCCEEEccCCCccccccccccccccc-------cccc--------------------------
Confidence            9999999999999999999999999999965442111000000       0000                          


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-CCCCCccchHHHHHHHHHHHhh----
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-GQGHGSAVDWWTLGVFLYEMLY----  392 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-~~~~~~~~DiWSlGvil~ellt----  392 (517)
                                             .................+||+.|+|||++. +..|+.++|||||||++|||++    
T Consensus       195 -----------------------~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p  251 (432)
T 3n9x_A          195 -----------------------EEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQS  251 (432)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTT
T ss_pred             -----------------------ccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccc
Confidence                                   000000000112345678999999999974 5569999999999999999998    


Q ss_pred             -------CCCCCCCCCh-----------------HHHHHHHhc---CCC-----------------CCCCCCCCCc-hh-
Q 010140          393 -------GTTPFKGENN-----------------EKTLINILK---KPL-----------------TFPRIGVSSS-KE-  426 (517)
Q Consensus       393 -------G~~Pf~~~~~-----------------~~~~~~i~~---~~~-----------------~~p~~~~~~~-~~-  426 (517)
                             |.++|.+.+.                 .+.+..+..   .+.                 ..+....... .. 
T Consensus       252 ~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T 3n9x_A          252 HINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKY  331 (432)
T ss_dssp             TCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHS
T ss_pred             cccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHC
Confidence                   4455554331                 122222211   000                 0000000000 00 


Q ss_pred             HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       427 ~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      .....++.+||.+||+.||++|||+.    |+|+||||++++|.....
T Consensus       332 ~~~s~~~~dLl~~mL~~dP~~R~ta~----e~L~Hp~f~~~~~~~~e~  375 (432)
T 3n9x_A          332 PSISDDGINLLESMLKFNPNKRITID----QALDHPYLKDVRKKKLEN  375 (432)
T ss_dssp             TTSCHHHHHHHHHHSCSSTTTSCCHH----HHHTCGGGTTTCCTTTC-
T ss_pred             CCCCHHHHHHHHHHhcCCcccCCCHH----HHhcChhhhhccCcccCc
Confidence            01234689999999999999999997    999999999999976543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=3.5e-49  Score=391.51  Aligned_cols=266  Identities=24%  Similarity=0.326  Sum_probs=208.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++............++.+|+.+++.++||||+++++++...
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   84 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLR-----DHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE   84 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECC-----CCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeecc
Confidence            45789999999999999999999876     6789999999765433344556778899999999999999999998765


Q ss_pred             ce----eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 HY----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ~~----~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      ..    .|+||||++||+|.+++....  .+....                            +..++.||+.||+|||+
T Consensus        85 ~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lH~  134 (311)
T 3ork_A           85 TPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKR----------------------------AIEVIADACQALNFSHQ  134 (311)
T ss_dssp             ETTEEEEEEEEECCCEEEHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccEEEEecCCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            43    499999999999999987642  233222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.+.....                                           
T Consensus       135 ~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~-------------------------------------------  171 (311)
T 3ork_A          135 NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGN-------------------------------------------  171 (311)
T ss_dssp             TTCCCCCCCGGGEEEETTSCEEECCCSCC---------------------------------------------------
T ss_pred             CCCCcCCCCHHHEEEcCCCCEEEeeccCccccccccc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                      ........+||+.|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       172 --------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf  219 (311)
T 3ork_A          172 --------------------------------SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF  219 (311)
T ss_dssp             ------------------------------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             --------------------------------ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence                                            001123357999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+....+....+.......+.....     ..+.++.+||.+||+.||++||++.    +++.|+|++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~dP~~R~~~~----~~l~~~l~~~  279 (311)
T 3ork_A          220 TGDSPVSVAYQHVREDPIPPSARHE-----GLSADLDAVVLKALAKNPENRYQTA----AEMRADLVRV  279 (311)
T ss_dssp             CCSSHHHHHHHHHHCCCCCHHHHST-----TCCHHHHHHHHHHTCSSGGGSCSSH----HHHHHHHHHH
T ss_pred             CCCChHHHHHHHhcCCCCCcccccC-----CCCHHHHHHHHHHHhcCHhhChhhH----HHHHHHHHHH
Confidence            9988887777766654333211111     1223589999999999999999998    9999999864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2e-48  Score=379.24  Aligned_cols=256  Identities=31%  Similarity=0.520  Sum_probs=213.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     ++..||+|++.....   .....+.+|+.+++.++||||+++++++.+.+.
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~a~k~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   80 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKG-----TRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTD   80 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGC---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCC-----CCcEEEEEeehhhcc---chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCe
Confidence            579999999999999999999887     678899999876432   224566779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++|++|.+++....  .++...                            ++.++.||+.||+|||++||+||
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~----------------------------~~~i~~~i~~~l~~lH~~~i~H~  130 (277)
T 3f3z_A           81 IYLVMELCTGGELFERVVHKR--VFRESD----------------------------AARIMKDVLSAVAYCHKLNVAHR  130 (277)
T ss_dssp             EEEEEECCCSCBHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEECC
T ss_pred             EEEEEeccCCCcHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCccCC
Confidence            999999999999999886642  232222                            24678999999999999999999


Q ss_pred             cCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||+   +.++.+||+|||++......                                                
T Consensus       131 dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~------------------------------------------------  162 (277)
T 3f3z_A          131 DLKPENFLFLTDSPDSPLKLIDFGLAARFKPG------------------------------------------------  162 (277)
T ss_dssp             CCSGGGEEESSSSTTCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             CCCHHHEEEecCCCCCcEEEEecccceeccCc------------------------------------------------
Confidence            999999999   78889999999998443210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......||+.|+|||++.+. ++.++|||||||++|+|++|..||.+.
T Consensus       163 -------------------------------~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          163 -------------------------------KMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             -------------------------------SCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------cchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence                                           011234699999999999765 899999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ...+....+......++.....     ..+..+.+||.+||+.||.+||++.    |+++||||+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~R~s~~----~~l~h~~~~~  267 (277)
T 3f3z_A          211 TDSEVMLKIREGTFTFPEKDWL-----NVSPQAESLIRRLLTKSPKQRITSL----QALEHEWFEK  267 (277)
T ss_dssp             SHHHHHHHHHHCCCCCCHHHHT-----TSCHHHHHHHHHHTCSSTTTSCCHH----HHTTSHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCchhhh-----cCCHHHHHHHHHHccCChhhCcCHH----HHhcCHHHhc
Confidence            9888888888876655532111     1223589999999999999999998    9999999975

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2.3e-48  Score=392.27  Aligned_cols=273  Identities=26%  Similarity=0.329  Sum_probs=209.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++...... ......+.+|+.+|+.++||||+++++++..  
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   89 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRK-----TGQKVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKA   89 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETT-----TCCEEEEEECCCSSCS-SSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-
T ss_pred             ccceeEEEEEecCCCcEEEEEEECC-----CCCEEEEEEEeccccc-ccchHHHHHHHHHHHhccCCCcccHhheeeccc
Confidence            5789999999999999999999876     6789999998654211 1223455679999999999999999999976  


Q ss_pred             ------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          161 ------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       161 ------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                            .+.+|+|||||+ |+|...+.... ..++...                            ++.++.||+.||+|
T Consensus        90 ~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~  139 (351)
T 3mi9_A           90 SPYNRCKGSIYLVFDFCE-HDLAGLLSNVL-VKFTLSE----------------------------IKRVMQMLLNGLYY  139 (351)
T ss_dssp             -------CEEEEEEECCS-EEHHHHHHCTT-SCCCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEEeccC-CCHHHHHhhcc-CCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence                  457899999996 58877775532 2233322                            34788999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.+||+|||+++.+......                                       
T Consensus       140 LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~---------------------------------------  180 (351)
T 3mi9_A          140 IHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS---------------------------------------  180 (351)
T ss_dssp             HHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSS---------------------------------------
T ss_pred             HHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccc---------------------------------------
Confidence            99999999999999999999999999999998543311000                                       


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG  393 (517)
                                                         ........+||+.|+|||++.+. .++.++|||||||++|+|++|
T Consensus       181 -----------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  225 (351)
T 3mi9_A          181 -----------------------------------QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTR  225 (351)
T ss_dssp             -----------------------------------SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHS
T ss_pred             -----------------------------------cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhC
Confidence                                               01122345799999999999874 489999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchh-----------------------HHhhhhHHHHHHHhccCCcccccC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKE-----------------------FEEVVKLQDLISKLLVKNPKKRIG  450 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-----------------------~~~~~~l~dLi~~~L~~dP~~R~t  450 (517)
                      .+||.+.+....+..+.......+.........                       ......+.+||.+||+.||++|||
T Consensus       226 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  305 (351)
T 3mi9_A          226 SPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID  305 (351)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCC
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCC
Confidence            999999888777766654222222211111100                       011345889999999999999999


Q ss_pred             CCCChHHhhcCCCcCCCCc
Q 010140          451 SLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       451 ~~~~~~ell~hp~f~~~~~  469 (517)
                      +.    |+++||||.+..+
T Consensus       306 ~~----e~l~hp~f~~~~~  320 (351)
T 3mi9_A          306 SD----DALNHDFFWSDPM  320 (351)
T ss_dssp             HH----HHHTSGGGGSSSC
T ss_pred             HH----HHhCCCCcCCCCC
Confidence            98    9999999987544

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.5e-47  Score=375.74  Aligned_cols=257  Identities=21%  Similarity=0.352  Sum_probs=203.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      ...|++.+.||+|+||.||+|.+..     ++..||+|++...... ......+.+|+.+|+.++||||+++++++..  
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   98 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTE-----TTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV   98 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecC-----CceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc
Confidence            4559999999999999999999886     6788999998754322 2335667789999999999999999998865  


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        ...+|+||||+++|+|.+++....  .++..                            .++.++.||+.||.|||++
T Consensus        99 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~----------------------------~~~~~~~qi~~~l~~lH~~  148 (290)
T 1t4h_A           99 KGKKCIVLVTELMTSGTLKTYLKRFK--VMKIK----------------------------VLRSWCRQILKGLQFLHTR  148 (290)
T ss_dssp             SSCEEEEEEEECCCSCBHHHHHHHHS--SCCHH----------------------------HHHHHHHHHHHHHHHHHTS
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHcc--CCCHH----------------------------HHHHHHHHHHHHHHHHHcC
Confidence              467899999999999999987642  22222                            2246789999999999999


Q ss_pred             C--ceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          239 G--IVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       239 ~--iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |  |+||||||+|||++ .++.+||+|||++.....                                            
T Consensus       149 ~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~--------------------------------------------  184 (290)
T 1t4h_A          149 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--------------------------------------------  184 (290)
T ss_dssp             SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT--------------------------------------------
T ss_pred             CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc--------------------------------------------
Confidence            9  99999999999997 789999999999732110                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .......||+.|+|||++.+. ++.++|||||||++|+|++|..
T Consensus       185 ------------------------------------~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~  227 (290)
T 1t4h_A          185 ------------------------------------SFAKAVIGTPEFMAPEMYEEK-YDESVDVYAFGMCMLEMATSEY  227 (290)
T ss_dssp             ------------------------------------TSBEESCSSCCCCCGGGGGTC-CCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------cccccccCCcCcCCHHHHhcc-CCCcchHHHHHHHHHHHHhCCC
Confidence                                                011234699999999998754 8999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ||.+.................+......      ..++.+||.+||+.||.+||++.    |+++||||++
T Consensus       228 pf~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~----ell~h~~f~~  288 (290)
T 1t4h_A          228 PYSECQNAAQIYRRVTSGVKPASFDKVA------IPEVKEIIEGCIRQNKDERYSIK----DLLNHAFFQE  288 (290)
T ss_dssp             TTTTCSSHHHHHHHHTTTCCCGGGGGCC------CHHHHHHHHHHSCSSGGGSCCHH----HHHTSGGGC-
T ss_pred             CCCCcCcHHHHHHHHhccCCccccCCCC------CHHHHHHHHHHccCChhhCCCHH----HHhhCccccc
Confidence            9998666554444443332222111111      13589999999999999999998    9999999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.2e-48  Score=388.18  Aligned_cols=270  Identities=28%  Similarity=0.412  Sum_probs=202.6

Q ss_pred             CCCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           83 LDHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      .+.|++. +.||+|+||.||+|++..     +++.||||++....   ......+.+|+.+|.++ +||||+++++++.+
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~   82 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLI-----TSQEYAVKIIEKQP---GHIRSRVFREVEMLYQCQGHRNVLELIEFFEE   82 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSS-----SCCEEEEEEEECCS---SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcC-----CCcEEEEEEEeeCc---chhHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            3679995 789999999999999876     67899999996542   12234567799999885 79999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|+||||++||+|.+++...  ..++...                            ++.++.||+.||+|||++||
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~i  132 (316)
T 2ac3_A           83 EDRFYLVFEKMRGGSILSHIHKR--RHFNELE----------------------------ASVVVQDVASALDFLHNKGI  132 (316)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEcCCCCcHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999998764  2233222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCc---EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGH---IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~---vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||||||+|||++.++.   +||+|||++..........                                         
T Consensus       133 vH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~-----------------------------------------  171 (316)
T 2ac3_A          133 AHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS-----------------------------------------  171 (316)
T ss_dssp             CCCCCCGGGEEESCSSSSCSEEECCTTCCC--------------------------------------------------
T ss_pred             eeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc-----------------------------------------
Confidence            99999999999988775   9999999985432110000                                         


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----CCCCccchHHHHHHHHHHHhh
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----QGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----~~~~~~~DiWSlGvil~ellt  392 (517)
                                                    ..........+||+.|+|||++.+     ..++.++|||||||++|+|++
T Consensus       172 ------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~  221 (316)
T 2ac3_A          172 ------------------------------PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLS  221 (316)
T ss_dssp             ----------------------------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             ------------------------------cccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHH
Confidence                                          000011223469999999999975     457899999999999999999


Q ss_pred             CCCCCCCCCh---------------HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          393 GTTPFKGENN---------------EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       393 G~~Pf~~~~~---------------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      |..||.+...               ......+......++.....     .....+++||.+||+.||.+||++.    |
T Consensus       222 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dP~~Rps~~----e  292 (316)
T 2ac3_A          222 GYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWA-----HISCAAKDLISKLLVRDAKQRLSAA----Q  292 (316)
T ss_dssp             SSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHT-----TSCHHHHHHHHHHSCSSTTTSCCHH----H
T ss_pred             CCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcc-----cCCHHHHHHHHHHhhCChhhCCCHH----H
Confidence            9999987542               33455666665554421111     1223589999999999999999998    9


Q ss_pred             hhcCCCcCCCCcc
Q 010140          458 IKRHEFFKGINWA  470 (517)
Q Consensus       458 ll~hp~f~~~~~~  470 (517)
                      +++||||++..|.
T Consensus       293 ~l~hp~~~~~~~~  305 (316)
T 2ac3_A          293 VLQHPWVQGCAPE  305 (316)
T ss_dssp             HHHSTTCC-----
T ss_pred             HhcChhhcCCCCc
Confidence            9999999987664

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.3e-48  Score=403.34  Aligned_cols=264  Identities=32%  Similarity=0.471  Sum_probs=199.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH-----HHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-----AIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .++|.+.+.||+|+||.||+|.++.     +++.||||++.+...     ........+.+|+.+|++++||||++++++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~  208 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERK-----TCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNF  208 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECC-----CCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            3689999999999999999999887     678999999876432     122334457789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +..+ ..|+|||||++|+|.+++...  ..+++..                            ++.++.||+.||+|||+
T Consensus       209 ~~~~-~~~lv~e~~~~g~L~~~l~~~--~~~~~~~----------------------------~~~i~~qi~~~l~~LH~  257 (419)
T 3i6u_A          209 FDAE-DYYIVLELMEGGELFDKVVGN--KRLKEAT----------------------------CKLYFYQMLLAVQYLHE  257 (419)
T ss_dssp             EESS-EEEEEEECCTTCBGGGGTSSS--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EecC-ceEEEEEcCCCCcHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            8654 579999999999998876543  2233222                            24678999999999999


Q ss_pred             cCceeccCCCCceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      +||+||||||+|||++.++   .+||+|||+++....                                           
T Consensus       258 ~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~-------------------------------------------  294 (419)
T 3i6u_A          258 NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE-------------------------------------------  294 (419)
T ss_dssp             TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------------------------------------------
T ss_pred             CCccccCCChHhEEEecCCCcceEEEeecccceecCC-------------------------------------------
Confidence            9999999999999997544   599999999854321                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~ell  391 (517)
                                                          .......+||+.|+|||++.+   ..++.++|||||||++|+|+
T Consensus       295 ------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~ll  338 (419)
T 3i6u_A          295 ------------------------------------TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL  338 (419)
T ss_dssp             ----------------------------------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHH
Confidence                                                011234579999999999864   45788999999999999999


Q ss_pred             hCCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          392 YGTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       392 tG~~Pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +|..||.+.... .....+......++....     ...+..+.+||.+||+.||++||++.    |+++||||++.+|.
T Consensus       339 tg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~li~~~L~~dP~~Rps~~----e~l~hp~~~~~~~~  409 (419)
T 3i6u_A          339 SGYPPFSEHRTQVSLKDQITSGKYNFIPEVW-----AEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWLQDEDMK  409 (419)
T ss_dssp             HSSCSSCCCSSSCCHHHHHHTTCCCCCHHHH-----TTSCHHHHHHHHHHSCSSTTTSCCHH----HHHHSGGGCCHHHH
T ss_pred             HCCCCCCCCcchHHHHHHHhcCCCCCCchhh-----cccCHHHHHHHHHHccCChhHCcCHH----HHhCCcccCChhHH
Confidence            999999876543 333444444433321110     11234689999999999999999998    99999999988775

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.1e-48  Score=388.75  Aligned_cols=270  Identities=22%  Similarity=0.353  Sum_probs=200.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++.....  ......+.+|+.+|++++||||++++++|.+.. 
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   78 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKV-----DDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLETPP   78 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETT-----TCCEEEEEEEECCST--TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCS
T ss_pred             hcCceeeEecCCCCeEEEEEEEcC-----CCcEEEEEEeecCCc--hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEecc
Confidence            579999999999999999999886     678999999864321  123456778999999999999999999985433 


Q ss_pred             --------------------------------------------------------eeEEEEEecCCCchhHHHHhCCCC
Q 010140          163 --------------------------------------------------------YSCLVMEYCPGGDLYAARQRQPGK  186 (517)
Q Consensus       163 --------------------------------------------------------~~~lV~E~~~gg~L~~~l~~~~~~  186 (517)
                                                                              .+|+|||||+||+|.+++......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~  158 (332)
T 3qd2_B           79 EKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL  158 (332)
T ss_dssp             CHHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG
T ss_pred             chhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc
Confidence                                                                    389999999999999999875321


Q ss_pred             ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          187 RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                        .....                         ..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus       159 --~~~~~-------------------------~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a  211 (332)
T 3qd2_B          159 --EDREH-------------------------GVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLV  211 (332)
T ss_dssp             --GGSCH-------------------------HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             --cchhh-------------------------HHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcc
Confidence              11111                         112467899999999999999999999999999999999999999998


Q ss_pred             ccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCcccc
Q 010140          267 FKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVV  346 (517)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (517)
                      +...........                                                                  ..
T Consensus       212 ~~~~~~~~~~~~------------------------------------------------------------------~~  225 (332)
T 3qd2_B          212 TAMDQDEEEQTV------------------------------------------------------------------LT  225 (332)
T ss_dssp             EECSCC--------------------------------------------------------------------------
T ss_pred             cccccchhhccc------------------------------------------------------------------cc
Confidence            654421110000                                                                  00


Q ss_pred             ccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchh
Q 010140          347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKE  426 (517)
Q Consensus       347 ~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~  426 (517)
                      ...........+||+.|+|||++.+..++.++|||||||++|||++|..|+..  .......+....  .+      ...
T Consensus       226 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~--~~~~~~~~~~~~--~~------~~~  295 (332)
T 3qd2_B          226 PMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME--RVRIITDVRNLK--FP------LLF  295 (332)
T ss_dssp             ------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH--HHHHHHHHHTTC--CC------HHH
T ss_pred             cccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH--HHHHHHHhhccC--CC------ccc
Confidence            00001123445799999999999999999999999999999999998777532  122233333321  11      111


Q ss_pred             HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          427 FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       427 ~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .....++.+||.+||+.||++||++.    |+++||||+++
T Consensus       296 ~~~~~~~~~li~~~l~~~p~~Rps~~----~~l~~~~f~~~  332 (332)
T 3qd2_B          296 TQKYPQEHMMVQDMLSPSPTERPEAT----DIIENAIFENL  332 (332)
T ss_dssp             HHHCHHHHHHHHHHHCSSGGGSCCHH----HHHHSTTCCCC
T ss_pred             ccCChhHHHHHHHHccCCCCcCCCHH----HHhhchhhhcC
Confidence            22334689999999999999999998    99999999874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=7.1e-48  Score=388.00  Aligned_cols=256  Identities=27%  Similarity=0.349  Sum_probs=208.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|++++.||+|+||.||+|++..     +++.||||++.............+.+|+.+|+.++||||+++++++..++.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  128 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT  128 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             hheeeeeEEccCCCEEEEEEEEcc-----CCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCe
Confidence            469999999999999999999876     678999999864322223445677889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+. |+|.+++.... ..++..                            .++.++.||+.||+|||++||+||
T Consensus       129 ~~lv~e~~~-g~l~~~l~~~~-~~l~~~----------------------------~~~~i~~qi~~aL~~LH~~~ivH~  178 (348)
T 1u5q_A          129 AWLVMEYCL-GSASDLLEVHK-KPLQEV----------------------------EIAAVTHGALQGLAYLHSHNMIHR  178 (348)
T ss_dssp             EEEEEECCS-EEHHHHHHHHT-SCCCHH----------------------------HHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred             EEEEEecCC-CCHHHHHHHhc-CCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeeeC
Confidence            999999996 68888775432 222222                            223678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||+++...                                                     
T Consensus       179 Dlkp~NIll~~~~~~kL~DfG~a~~~~-----------------------------------------------------  205 (348)
T 1u5q_A          179 DVKAGNILLSEPGLVKLGDFGSASIMA-----------------------------------------------------  205 (348)
T ss_dssp             CCSGGGEEEETTTEEEECCCTTCBSSS-----------------------------------------------------
T ss_pred             CCCHHHEEECCCCCEEEeeccCceecC-----------------------------------------------------
Confidence            999999999999999999999984321                                                     


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                   .....+||+.|+|||++.   +..++.++|||||||++|||++|..||.+.
T Consensus       206 -----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          206 -----------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             -----------------------------SBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             -----------------------------CCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                         012346999999999985   456899999999999999999999999998


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +....+..+........... ..      ...+.+||.+||+.||++||++.    ++++||||...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~li~~~l~~dP~~Rps~~----~ll~h~~~~~~  312 (348)
T 1u5q_A          257 NAMSALYHIAQNESPALQSG-HW------SEYFRNFVDSCLQKIPQDRPTSE----VLLKHRFVLRE  312 (348)
T ss_dssp             CHHHHHHHHHHSCCCCCCCT-TS------CHHHHHHHHHHTCSSGGGSCCHH----HHTTCHHHHSC
T ss_pred             ChHHHHHHHHhcCCCCCCCC-CC------CHHHHHHHHHHcccChhhCcCHH----HHhhChhhhcc
Confidence            88777777766543222111 11      12489999999999999999998    99999999653

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=5.3e-48  Score=398.89  Aligned_cols=264  Identities=27%  Similarity=0.430  Sum_probs=201.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec---
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA---  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~---  160 (517)
                      .+|++++.||+|+||.||+|+++.     +++.||||++....       ....+|+.+|+.++|||||+++++|..   
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~-----~~~~vaiK~~~~~~-------~~~~~E~~il~~l~hpniv~l~~~~~~~~~  121 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCD-----SGELVAIKKVLQDK-------RFKNRELQIMRKLDHCNIVRLRYFFYSSGE  121 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEECCT-------TSCCHHHHHHHTCCCTTBCCEEEEEEEEET
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECC-----CCcEEEEEEecccc-------hhHHHHHHHHHHcCCCCccceeeEEeccCC
Confidence            579999999999999999999986     67899999986542       122359999999999999999998843   


Q ss_pred             ---CceeEEEEEecCCCchhHHHHhC--CCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          161 ---SHYSCLVMEYCPGGDLYAARQRQ--PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       161 ---~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                         ..++++||||+++ +|...+...  ....+++                            ..++.|+.||+.||+||
T Consensus       122 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~----------------------------~~~~~~~~qi~~aL~~L  172 (420)
T 1j1b_A          122 KKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPV----------------------------IYVKLYMYQLFRSLAYI  172 (420)
T ss_dssp             TTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             CCcceeEEeehhcccc-cHHHHHHHHhhccCCCCH----------------------------HHHHHHHHHHHHHHHHH
Confidence               2347899999964 776665432  1122222                            22347889999999999


Q ss_pred             HhcCceeccCCCCceEEccC-CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVRED-GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~-~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      |++||+||||||+||||+.+ +.+||+|||+++.+...                                          
T Consensus       173 H~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~------------------------------------------  210 (420)
T 1j1b_A          173 HSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG------------------------------------------  210 (420)
T ss_dssp             HTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT------------------------------------------
T ss_pred             HHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccC------------------------------------------
Confidence            99999999999999999965 57899999998543210                                          


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG  393 (517)
                                                           ......+||+.|+|||++.+. .|+.++|||||||++|||++|
T Consensus       211 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G  253 (420)
T 1j1b_A          211 -------------------------------------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG  253 (420)
T ss_dssp             -------------------------------------CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhC
Confidence                                                 012235799999999999875 689999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcC-----------------CCCCCCCCCCCch-h--HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          394 TTPFKGENNEKTLINILKK-----------------PLTFPRIGVSSSK-E--FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~-----------------~~~~p~~~~~~~~-~--~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ++||.+.+..+.+.+++..                 ...+|........ .  .....++.+||.+||+.||.+||++. 
T Consensus       254 ~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~-  332 (420)
T 1j1b_A          254 QPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPL-  332 (420)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHH-
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHH-
Confidence            9999998877766666431                 1122221110000 0  01234689999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCCccc
Q 010140          454 GSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       454 ~~~ell~hp~f~~~~~~~  471 (517)
                         |+++||||+.+.+..
T Consensus       333 ---e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          333 ---EACAHSFFDELRDPN  347 (420)
T ss_dssp             ---HHHTSGGGGGGGCTT
T ss_pred             ---HHhCCHhhccccccc
Confidence               999999999876654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=9.3e-48  Score=389.86  Aligned_cols=259  Identities=29%  Similarity=0.469  Sum_probs=211.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH-----HHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA-----LAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~-----~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||||++....     .........+.+|+.+++.+ +||||++++++
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  168 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRA-----TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS  168 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             hhcccceEEecCCCEEEEEEEECC-----CCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence            579999999999999999999876     67899999986432     22233456677899999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +......|+||||++|++|.+++...  ..++...                            ++.++.||+.||.|||+
T Consensus       169 ~~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~~L~~LH~  218 (365)
T 2y7j_A          169 YESSSFMFLVFDLMRKGELFDYLTEK--VALSEKE----------------------------TRSIMRSLLEAVSFLHA  218 (365)
T ss_dssp             EEBSSEEEEEECCCTTCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EeeCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988753  2222222                            24678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.+|.+||+|||++..+...                                             
T Consensus       219 ~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~---------------------------------------------  253 (365)
T 2y7j_A          219 NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPG---------------------------------------------  253 (365)
T ss_dssp             TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT---------------------------------------------
T ss_pred             CCeecCCCCHHHEEECCCCCEEEEecCcccccCCC---------------------------------------------
Confidence            99999999999999999999999999998433210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC------CCCCccchHHHHHHHHHHHh
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~------~~~~~~~DiWSlGvil~ell  391 (517)
                                                        ......+||+.|+|||++.+      ..++.++|||||||++|+|+
T Consensus       254 ----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell  299 (365)
T 2y7j_A          254 ----------------------------------EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLL  299 (365)
T ss_dssp             ----------------------------------CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHH
T ss_pred             ----------------------------------cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHH
Confidence                                              11233579999999999863      35789999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +|..||.+......+..+......++.....     ..+..+.+||.+||+.||++||++.    |+++||||+
T Consensus       300 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dP~~Rps~~----ell~hp~f~  364 (365)
T 2y7j_A          300 AGSPPFWHRRQILMLRMIMEGQYQFSSPEWD-----DRSSTVKDLISRLLQVDPEARLTAE----QALQHPFFE  364 (365)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCCCHHHHS-----SSCHHHHHHHHHHSCSSTTTSCCHH----HHHHSGGGC
T ss_pred             HCCCCCCCCCHHHHHHHHHhCCCCCCCcccc-----cCCHHHHHHHHHHcCCChhHCcCHH----HHhcCcccC
Confidence            9999999988888888777765544321111     1223589999999999999999998    999999997

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=5.6e-48  Score=381.45  Aligned_cols=257  Identities=30%  Similarity=0.452  Sum_probs=211.7

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++.+.||+|+||.||+|+++.     +++.||+|++......   ....+.+|+.+++.++||||+++++++.+.+.
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRL-----TGKLFALKCIKKSPAF---RDSSLENEIAVLKKIKHENIVTLEDIYESTTH   80 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             ccceeeeeccCCCCceEEEEEECC-----CCCEEEEEEEeccccc---chHHHHHHHHHHHhCCCCCeeehhhhcccCCE
Confidence            579999999999999999999876     6789999999765322   23456679999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++|++|.+++....  .++...                            ++.++.||+.||.|||++||+||
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~H~  130 (304)
T 2jam_A           81 YYLVMQLVSGGELFDRILERG--VYTEKD----------------------------ASLVIQQVLSAVKYLHENGIVHR  130 (304)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEEcCCCccHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCcccc
Confidence            999999999999999886542  222222                            23678999999999999999999


Q ss_pred             cCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||+   +.++.+||+|||+++....                                                 
T Consensus       131 dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~-------------------------------------------------  161 (304)
T 2jam_A          131 DLKPENLLYLTPEENSKIMITDFGLSKMEQN-------------------------------------------------  161 (304)
T ss_dssp             SCCGGGCEESSSSTTCCEEBCSCSTTCCCCC-------------------------------------------------
T ss_pred             CCCHHHEEEecCCCCCCEEEccCCcceecCC-------------------------------------------------
Confidence            999999999   7788999999999732110                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       162 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          162 -------------------------------GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             -------------------------------BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             -------------------------------CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                                           0112236899999999999989999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ........+......++......     .+..+.+||.+||..||.+||++.    |+++||||++.
T Consensus       211 ~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~li~~~l~~dp~~Rps~~----~~l~h~~~~~~  268 (304)
T 2jam_A          211 TESKLFEKIKEGYYEFESPFWDD-----ISESAKDFICHLLEKDPNERYTCE----KALSHPWIDGN  268 (304)
T ss_dssp             CHHHHHHHHHHCCCCCCTTTTTT-----SCHHHHHHHHHHHCSSTTTSCCHH----HHHTSHHHHSS
T ss_pred             CHHHHHHHHHcCCCCCCcccccc-----CCHHHHHHHHHHcCCChhHCcCHH----HHhcCccccCC
Confidence            88888888887765554332221     123589999999999999999998    99999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=3.6e-48  Score=392.21  Aligned_cols=270  Identities=25%  Similarity=0.371  Sum_probs=214.4

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccce
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTL  154 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l  154 (517)
                      ....+.+..++|++++.||+|+||.||+|++..     +++.||+|++.....  ......+.+|+.+|+.++||||+++
T Consensus        24 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~va~K~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~   96 (360)
T 3eqc_A           24 KQKVGELKDDDFEKISELGAGNGGVVFKVSHKP-----SGLVMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGF   96 (360)
T ss_dssp             HHTCCCCCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEECCCC--HHHHHHHHHHHGGGGGCCCTTBCCE
T ss_pred             hhcccccccccceeeeeecCCCCeEEEEEEECC-----CCcEEEEEEeccccC--HHHHHHHHHHHHHHHHCCCCCEEEE
Confidence            445567778999999999999999999999886     678999999875421  2334567789999999999999999


Q ss_pred             eeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          155 YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       155 ~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      ++++.+++..|+||||++||+|.+++....  .++...                            ++.++.||+.||+|
T Consensus        97 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~~i~~~l~~  146 (360)
T 3eqc_A           97 YGAFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQI----------------------------LGKVSIAVIKGLTY  146 (360)
T ss_dssp             EEEEEETTEEEEEECCCTTCBHHHHHHHHS--SCCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             eEEEEECCEEEEEEECCCCCCHHHHHHHcC--CCCHHH----------------------------HHHHHHHHHHHHHH
Confidence            999999999999999999999999987642  222222                            23678999999999


Q ss_pred             HHhc-CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          235 LHMM-GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       235 LH~~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      ||++ ||+||||||+|||++.++.+||+|||++.....                                          
T Consensus       147 lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------------------------  184 (360)
T 3eqc_A          147 LREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID------------------------------------------  184 (360)
T ss_dssp             HHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH------------------------------------------
T ss_pred             HHHhCCEEcCCccHHHEEECCCCCEEEEECCCCccccc------------------------------------------
Confidence            9996 999999999999999999999999999833210                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                            .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       185 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  226 (360)
T 3eqc_A          185 --------------------------------------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG  226 (360)
T ss_dssp             --------------------------------------HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------------------ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhC
Confidence                                                  012234799999999999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHh------------------------------------------cCCCCCCCCCCCCchhHHhhh
Q 010140          394 TTPFKGENNEKTLINIL------------------------------------------KKPLTFPRIGVSSSKEFEEVV  431 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~~~~~~  431 (517)
                      ..||...+..+....+.                                          ......  ...     .....
T Consensus       227 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~  299 (360)
T 3eqc_A          227 RYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPK--LPS-----GVFSL  299 (360)
T ss_dssp             SCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHHHHHSCCCC--CCT-----TTSCH
T ss_pred             CCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCC--CCc-----ccccH
Confidence            99998876554332221                                          111000  000     01123


Q ss_pred             hHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          432 KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       432 ~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ++.+||.+||+.||++|||+.    |+++||||++.+|+.+
T Consensus       300 ~~~~li~~~L~~dP~~Rpt~~----ell~hp~~~~~~~~~~  336 (360)
T 3eqc_A          300 EFQDFVNKCLIKNPAERADLK----QLMVHAFIKRSDAEEV  336 (360)
T ss_dssp             HHHHHHHHHHCSSTTTSCCHH----HHHTSHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhcChhhCCCHH----HHhhChHhhcchHhhh
Confidence            589999999999999999998    9999999998777644

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=5.4e-48  Score=391.61  Aligned_cols=264  Identities=26%  Similarity=0.343  Sum_probs=193.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|++++.||+|+||.||+|.+..     +++.||||++..... ......++.+|+.+|+.++||||+++++++...  
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  102 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTK-----TGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS  102 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETT-----TTEEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             CceEEeeEEeecCCeEEEEEEECC-----CCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCc
Confidence            789999999999999999999876     678999999865321 123345667899999999999999999999654  


Q ss_pred             ----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 ----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                          ..+|+||||+ +++|.+++...   .++...                            ++.++.||+.||+|||+
T Consensus       103 ~~~~~~~~lv~e~~-~~~L~~~~~~~---~l~~~~----------------------------~~~i~~qi~~aL~~LH~  150 (367)
T 2fst_X          103 LEEFNDVYLVTHLM-GADLNNIVKCQ---KLTDDH----------------------------VQFLIYQILRGLKYIHS  150 (367)
T ss_dssp             GGGCCCCEEEEECC-CEECC-----C---CCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeccc-CCCHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence                5689999999 88998887542   233222                            24678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++....                                              
T Consensus       151 ~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~----------------------------------------------  184 (367)
T 2fst_X          151 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTAD----------------------------------------------  184 (367)
T ss_dssp             TTCCCCCCCGGGEEECTTCCEEECC-------------------------------------------------------
T ss_pred             CCeeeCCCCHhhEEECCCCCEEEeeccccccccc----------------------------------------------
Confidence            9999999999999999999999999999843210                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         .....+||+.|+|||++.+ ..++.++|||||||++|||++|++|
T Consensus       185 -----------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p  229 (367)
T 2fst_X          185 -----------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL  229 (367)
T ss_dssp             -----------------------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             -----------------------------------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCC
Confidence                                               1123479999999999987 5689999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCC--------------------CCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          397 FKGENNEKTLINILKKPLTF--------------------PRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~--------------------p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      |.+.+..+.+..+.......                    +.........  ......+.+||.+||+.||.+|||+.  
T Consensus       230 f~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~--  307 (367)
T 2fst_X          230 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA--  307 (367)
T ss_dssp             CCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHH--
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHH--
Confidence            99988877766665421110                    0000000000  01234589999999999999999998  


Q ss_pred             hHHhhcCCCcCCCCcc
Q 010140          455 SVEIKRHEFFKGINWA  470 (517)
Q Consensus       455 ~~ell~hp~f~~~~~~  470 (517)
                        |+|+||||+.....
T Consensus       308 --e~L~hp~~~~~~~~  321 (367)
T 2fst_X          308 --QALAHAYFAQYHDP  321 (367)
T ss_dssp             --HHHTSGGGTTTCCG
T ss_pred             --HHhcChhhhhccCC
Confidence              99999999976543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.8e-48  Score=380.30  Aligned_cols=266  Identities=23%  Similarity=0.371  Sum_probs=206.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++++.||+|+||.||+|++..     +++.||+|++............++.+|+.+++.++||||+++++++
T Consensus         6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~   80 (294)
T 4eqm_A            6 GKIINERYKIVDKLGGGGMSTVYLAEDTI-----LNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD   80 (294)
T ss_dssp             SSCEETTEEEEEEEEEETTEEEEEEEETT-----TCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE
T ss_pred             hhHhhccEEEEEEEccCCCEEEEEEEECC-----CCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee
Confidence            34556889999999999999999999876     6788999998543222234456778899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..++.+|+||||++||+|.+++....  .++....                            +.++.||+.||+|||++
T Consensus        81 ~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~----------------------------~~~~~qi~~~l~~lH~~  130 (294)
T 4eqm_A           81 EEDDCYYLVMEYIEGPTLSEYIESHG--PLSVDTA----------------------------INFTNQILDGIKHAHDM  130 (294)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHH----------------------------HHHHHHHHHHHHHHHHT
T ss_pred             eeCCeEEEEEeCCCCCCHHHHHHhcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987642  2333222                            36789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++......                                             
T Consensus       131 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------  165 (294)
T 4eqm_A          131 RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS---------------------------------------------  165 (294)
T ss_dssp             TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------------------------------------------
T ss_pred             CcccCCCCHHHEEECCCCCEEEEeCCCcccccccc---------------------------------------------
Confidence            99999999999999999999999999985432100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.
T Consensus       166 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~  213 (294)
T 4eqm_A          166 --------------------------------LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN  213 (294)
T ss_dssp             -----------------------------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------------------------ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                                            011223469999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +.+......+..............    ...+..+.++|.+||+.||.+||+..    +.+.+.|.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~R~~~~----~~l~~~l~  271 (294)
T 4eqm_A          214 GETAVSIAIKHIQDSVPNVTTDVR----KDIPQSLSNVILRATEKDKANRYKTI----QEMKDDLS  271 (294)
T ss_dssp             SSCHHHHHHHHHSSCCCCHHHHSC----TTSCHHHHHHHHHHSCSSGGGSCSSH----HHHHHHHH
T ss_pred             CCChHHHHHHHhhccCCCcchhcc----cCCCHHHHHHHHHHhcCCHhHccccH----HHHHHHHH
Confidence            988877766666554322110000    01223589999999999999999766    55555544

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.7e-48  Score=380.94  Aligned_cols=265  Identities=30%  Similarity=0.477  Sum_probs=213.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ++|++++.||+|+||.||+|++..     +++.||+|++........   .....+.+|+.+++.++||||+++++++.+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   79 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKG-----TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN   79 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhHHhhcccCceEEEEEEEcC-----CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC
Confidence            579999999999999999999886     678999999865422110   123556779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ....|+||||+++++|.+++...  ..++...                            +..++.||+.||.|||++||
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i  129 (283)
T 3bhy_A           80 KTDVVLILELVSGGELFDFLAEK--ESLTEDE----------------------------ATQFLKQILDGVHYLHSKRI  129 (283)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCeEEEEEeecCCCcHHHHHHhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999998653  2222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCC----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       241 iHrDLKp~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +||||||+||+++.++    .+||+|||++......                                            
T Consensus       130 ~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~--------------------------------------------  165 (283)
T 3bhy_A          130 AHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAG--------------------------------------------  165 (283)
T ss_dssp             ECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC----------------------------------------------
T ss_pred             cCCCCChHHEEEecCCCCCCceEEEecccceeccCC--------------------------------------------
Confidence            9999999999998877    8999999998432210                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         .......||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       166 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  210 (283)
T 3bhy_A          166 -----------------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  210 (283)
T ss_dssp             -----------------------------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------------CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCC
Confidence                                               011234689999999999998899999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      |.+....+.+..+......++.....     .....+.+||.+||..||.+||++.    |+++||||+.+.+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~----~~l~h~~~~~~~~~~  276 (283)
T 3bhy_A          211 FLGETKQETLTNISAVNYDFDEEYFS-----NTSELAKDFIRRLLVKDPKRRMTIA----QSLEHSWIKAIRRRN  276 (283)
T ss_dssp             TCCSSHHHHHHHHHTTCCCCCHHHHT-----TCCHHHHHHHHTTSCSSGGGSCCHH----HHHHCHHHHHHHHCC
T ss_pred             CCCcchHHHHHHhHhcccCCcchhcc-----cCCHHHHHHHHHHccCCHhHCcCHH----HHHhCHHHHHHHHHh
Confidence            99988888887777665443321111     1223589999999999999999998    999999999876643

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.6e-48  Score=394.20  Aligned_cols=265  Identities=26%  Similarity=0.426  Sum_probs=202.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee-
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE-  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-  159 (517)
                      ...++|++++.||+|+||.||+|++..     +++.||||++..+.       ....+|+.+|+.++||||++++++|. 
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~-----~~~~vAiK~~~~~~-------~~~~~E~~il~~l~hpnIv~l~~~~~~   71 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIE-----SGKRFALKKVLQDP-------RYKNRELDIMKVLDHVNIIKLVDYFYT   71 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETT-----TCCEEEEEEEECCT-------TSCCHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECC-----CCCEEEEEEEecCc-------chHHHHHHHHHHcCCCCccchhheeee
Confidence            345789999999999999999999886     67899999986542       12235999999999999999999984 


Q ss_pred             -------------------------------------cCceeEEEEEecCCCchhHHHHhC--CCCccCccchhhhhhhh
Q 010140          160 -------------------------------------ASHYSCLVMEYCPGGDLYAARQRQ--PGKRFGISSAKFVFFLL  200 (517)
Q Consensus       160 -------------------------------------~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~~~~l  200 (517)
                                                           +..++|+||||++ |+|.+.+...  ....++..         
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~---------  141 (383)
T 3eb0_A           72 TGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMN---------  141 (383)
T ss_dssp             C-------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHH---------
T ss_pred             cCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHH---------
Confidence                                                 3445899999996 5888777642  11222222         


Q ss_pred             hhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCc
Q 010140          201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPK  279 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~  279 (517)
                                         .++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++.+...       
T Consensus       142 -------------------~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-------  195 (383)
T 3eb0_A          142 -------------------LISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS-------  195 (383)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT-------
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC-------
Confidence                               2347889999999999999999999999999997 6889999999998543210       


Q ss_pred             chHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCC
Q 010140          280 LSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVG  359 (517)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  359 (517)
                                                                                              ......+|
T Consensus       196 ------------------------------------------------------------------------~~~~~~~~  203 (383)
T 3eb0_A          196 ------------------------------------------------------------------------EPSVAYIC  203 (383)
T ss_dssp             ------------------------------------------------------------------------SCCCCCCC
T ss_pred             ------------------------------------------------------------------------CCCcCccc
Confidence                                                                                    11223468


Q ss_pred             CCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcC-----------------CCCCCCCCC
Q 010140          360 THEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK-----------------PLTFPRIGV  421 (517)
Q Consensus       360 t~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~-----------------~~~~p~~~~  421 (517)
                      |+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+..+.+..+...                 ...+|....
T Consensus       204 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  283 (383)
T 3eb0_A          204 SRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKA  283 (383)
T ss_dssp             CSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCC
T ss_pred             CCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCc
Confidence            99999999998765 899999999999999999999999999888777766531                 111222111


Q ss_pred             CCchh---HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          422 SSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       422 ~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      .....   ...+.++.+||.+||+.||.+|||+.    |+++||||+.+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~----e~l~hp~f~~~~~  330 (383)
T 3eb0_A          284 KDWRKILPEGTPSLAIDLLEQILRYEPDLRINPY----EAMAHPFFDHLRN  330 (383)
T ss_dssp             CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHH----HHHTSGGGHHHHH
T ss_pred             ccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHH----HHhcCHHHHHHHh
Confidence            11000   01233589999999999999999998    9999999987654

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=382.65  Aligned_cols=270  Identities=27%  Similarity=0.386  Sum_probs=209.6

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccc
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPT  153 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~  153 (517)
                      .........++|++++.||+|+||.||+|++..     +++.||||++....    .....+.+|+.+++.+ +||||++
T Consensus        15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~   85 (326)
T 2x7f_A           15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVK-----TGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIAT   85 (326)
T ss_dssp             -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCS----STTHHHHHHHHHHHHHCCSTTBCC
T ss_pred             cchhccCCCCcEEEEEEeccCCCEEEEEEEECC-----CCCeEEEEEEecCc----ccHHHHHHHHHHHHhccCCCCeee
Confidence            334445567899999999999999999999876     67899999986432    2234566799999999 8999999


Q ss_pred             eeeeeec------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHH
Q 010140          154 LYAEFEA------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE  227 (517)
Q Consensus       154 l~~~~~~------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  227 (517)
                      +++++..      .+.+|+||||+++|+|.+++.......++...                            ++.++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~----------------------------~~~i~~q  137 (326)
T 2x7f_A           86 YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEW----------------------------IAYICRE  137 (326)
T ss_dssp             EEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHH----------------------------HHHHHHH
T ss_pred             eeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHH----------------------------HHHHHHH
Confidence            9999976      56899999999999999998765322333222                            2367899


Q ss_pred             HHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccc
Q 010140          228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCF  307 (517)
Q Consensus       228 i~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (517)
                      |+.||.|||++||+||||||+|||++.++.+||+|||++......                                   
T Consensus       138 i~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-----------------------------------  182 (326)
T 2x7f_A          138 ILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT-----------------------------------  182 (326)
T ss_dssp             HHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC----------------------------------------
T ss_pred             HHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcC-----------------------------------
Confidence            999999999999999999999999999999999999998432210                                   


Q ss_pred             cccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHH
Q 010140          308 SSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWT  382 (517)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWS  382 (517)
                                                                 ........||+.|+|||++.     +..++.++||||
T Consensus       183 -------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s  219 (326)
T 2x7f_A          183 -------------------------------------------VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWS  219 (326)
T ss_dssp             ---------------------------------------------------CCGGGCCHHHHC--------CCTTHHHHH
T ss_pred             -------------------------------------------ccccccccCCccccChhhhccccccCcCCCccchHHH
Confidence                                                       00112346999999999997     456899999999


Q ss_pred             HHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCC
Q 010140          383 LGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       383 lGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp  462 (517)
                      |||++|+|++|..||.+.........+.......... ...      +..+.+||.+||..||.+||++.    ++++||
T Consensus       220 lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~l~~li~~~l~~dp~~Rps~~----~ll~hp  288 (326)
T 2x7f_A          220 LGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKS-KKW------SKKFQSFIESCLVKNHSQRPATE----QLMKHP  288 (326)
T ss_dssp             HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSC-SCS------CHHHHHHHHHHCCSSGGGSCCHH----HHHTSH
T ss_pred             HHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCc-ccc------CHHHHHHHHHHhccChhhCCCHH----HHhhCh
Confidence            9999999999999999888777766665543322111 111      12589999999999999999998    999999


Q ss_pred             CcCCCCcc
Q 010140          463 FFKGINWA  470 (517)
Q Consensus       463 ~f~~~~~~  470 (517)
                      ||++..+.
T Consensus       289 ~~~~~~~~  296 (326)
T 2x7f_A          289 FIRDQPNE  296 (326)
T ss_dssp             HHHCCTTH
T ss_pred             HHhhCccc
Confidence            99987654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=392.06  Aligned_cols=262  Identities=27%  Similarity=0.450  Sum_probs=205.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH-----HHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR-----KKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~-----~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++........     .....+.+|+.+|+.++||||+++++++
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~   98 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKE-----KNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF   98 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETT-----TTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cceEEEeEEEecCCEEEEEEEECC-----CCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            579999999999999999999886     678999999976532111     1234556699999999999999999999


Q ss_pred             ecCceeEEEEEecCCC-chhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          159 EASHYSCLVMEYCPGG-DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      .+.+.+|+||||+.+| +|.+++....  .++....                            +.++.||+.||+|||+
T Consensus        99 ~~~~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~----------------------------~~i~~qi~~~L~~LH~  148 (335)
T 3dls_A           99 ENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLA----------------------------SYIFRQLVSAVGYLRL  148 (335)
T ss_dssp             ECSSEEEEEEECCTTSCBHHHHHHTCC--CCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             eeCCEEEEEEEeCCCCccHHHHHHhcC--CCCHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence            9999999999999766 9999887642  2333222                            3678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.....                                             
T Consensus       149 ~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~---------------------------------------------  183 (335)
T 3dls_A          149 KDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG---------------------------------------------  183 (335)
T ss_dssp             TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT---------------------------------------------
T ss_pred             CCeEEeccCHHHEEEcCCCcEEEeecccceECCCC---------------------------------------------
Confidence            99999999999999999999999999998443210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ......+||+.|+|||++.+..+ +.++|||||||++|+|++|..|
T Consensus       184 ----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~p  229 (335)
T 3dls_A          184 ----------------------------------KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENP  229 (335)
T ss_dssp             ----------------------------------CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCc
Confidence                                              11223469999999999998876 8899999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC------CCcc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG------INWA  470 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~------~~~~  470 (517)
                      |.....      ........|..         .+.++.+||.+||+.||++||++.    |+++||||+.      .+|+
T Consensus       230 f~~~~~------~~~~~~~~~~~---------~~~~l~~li~~~L~~dP~~Rps~~----ell~hp~~~~~~~~~~~~~~  290 (335)
T 3dls_A          230 FCELEE------TVEAAIHPPYL---------VSKELMSLVSGLLQPVPERRTTLE----KLVTDPWVTQPVNLADYTWE  290 (335)
T ss_dssp             CSSGGG------GTTTCCCCSSC---------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHCTTTTCCCCGGGCCHH
T ss_pred             hhhHHH------HHhhccCCCcc---------cCHHHHHHHHHHccCChhhCcCHH----HHhcCccccCCccccccCHH
Confidence            976322      11222222111         122589999999999999999998    9999999965      5666


Q ss_pred             cccCCCCC
Q 010140          471 LIRSIKPP  478 (517)
Q Consensus       471 ~~~~~~p~  478 (517)
                      .+.....|
T Consensus       291 ~~~~~~~~  298 (335)
T 3dls_A          291 EVFRVNKP  298 (335)
T ss_dssp             HHC-----
T ss_pred             HHhhhcCC
Confidence            65544433

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.2e-47  Score=378.36  Aligned_cols=265  Identities=28%  Similarity=0.424  Sum_probs=210.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||+|++....   ......+.+|+.+++.++||||+++++++...
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~-----~~~~~aiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   88 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKE-----TGALAAAKVIETKS---EEELEDYIVEIEILATCDHPYIVKLLGAYYHD   88 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETT-----TCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC
T ss_pred             CccceeecceeccCCCeEEEEEEEcC-----CCcEEEEEEecCCC---HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC
Confidence            34789999999999999999999886     67899999987543   23456677899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|.+++.... ..++...                            ++.++.||+.||.|||++||+
T Consensus        89 ~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~~i~  139 (302)
T 2j7t_A           89 GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQ----------------------------IQVVCRQMLEALNFLHSKRII  139 (302)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHT-SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEEEeCCCCcHHHHHHhhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999998876532 2232222                            246789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++......                                                 
T Consensus       140 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  170 (302)
T 2j7t_A          140 HRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-------------------------------------------------  170 (302)
T ss_dssp             CCCCSGGGEEECTTSCEEECCCHHHHHHHHH-------------------------------------------------
T ss_pred             cCCCCHHHEEECCCCCEEEEECCCCcccccc-------------------------------------------------
Confidence            9999999999999999999999987321100                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                   ........||+.|+|||++.     +..++.++|||||||++|+|++|..|
T Consensus       171 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p  221 (302)
T 2j7t_A          171 -----------------------------LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPP  221 (302)
T ss_dssp             -----------------------------HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCC
Confidence                                         00112346999999999984     56689999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      |...+....+..+............      ..+..+.+||.+||+.||.+||++.    ++++||||+++.|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~dp~~Rps~~----~ll~h~~~~~~~~~~  286 (302)
T 2j7t_A          222 HHELNPMRVLLKIAKSDPPTLLTPS------KWSVEFRDFLKIALDKNPETRPSAA----QLLEHPFVSSITSNK  286 (302)
T ss_dssp             TTTSCHHHHHHHHHHSCCCCCSSGG------GSCHHHHHHHHHHSCSCTTTSCCHH----HHTTSTTTTTCCCCH
T ss_pred             CccCCHHHHHHHHhccCCcccCCcc------ccCHHHHHHHHHHcccChhhCCCHH----HHhcChHHhhhccch
Confidence            9998887777777665432211111      1223589999999999999999998    999999999988753

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.4e-47  Score=372.84  Aligned_cols=260  Identities=26%  Similarity=0.434  Sum_probs=206.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++......  .....+.+|+.+++.++||||+++++++.+++.
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   79 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRV-----TEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNI   79 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEEGGGCT--THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeecCCCcEEEEEEECC-----CCcEEEEEEeeeccch--hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCE
Confidence            579999999999999999999876     6789999998654321  234566779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|.+++...  ..++..                            .+..++.||+.||+|||++||+||
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~--~~~~~~----------------------------~~~~~~~~i~~~l~~lH~~~i~H~  129 (276)
T 2yex_A           80 QYLFLEYCSGGELFDRIEPD--IGMPEP----------------------------DAQRFFHQLMAGVVYLHGIGITHR  129 (276)
T ss_dssp             EEEEEECCTTEEGGGGSBTT--TBCCHH----------------------------HHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             EEEEEEecCCCcHHHHHhhc--cCCCHH----------------------------HHHHHHHHHHHHHHHHHhCCeecc
Confidence            99999999999998877542  222222                            224778999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+||+++.++.+||+|||++........                                                 
T Consensus       130 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~-------------------------------------------------  160 (276)
T 2yex_A          130 DIKPENLLLDERDNLKISDFGLATVFRYNNR-------------------------------------------------  160 (276)
T ss_dssp             CCSGGGEEECTTCCEEECCCTTCEECEETTE-------------------------------------------------
T ss_pred             CCChHHEEEccCCCEEEeeCCCccccCCCcc-------------------------------------------------
Confidence            9999999999999999999999843321000                                                 


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                 ........||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+...
T Consensus       161 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  213 (276)
T 2yex_A          161 ---------------------------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (276)
T ss_dssp             ---------------------------ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT
T ss_pred             ---------------------------hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch
Confidence                                       011234579999999999988765 7799999999999999999999987655


Q ss_pred             H-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          403 E-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       403 ~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      . ..+..+.......+...       .....+.+||.+||+.||.+||++.    |+++||||+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~----~il~~~~~~~~  268 (276)
T 2yex_A          214 SCQEYSDWKEKKTYLNPWK-------KIDSAPLALLHKILVENPSARITIP----DIKKDRWYNKP  268 (276)
T ss_dssp             TSHHHHHHHTTCTTSTTGG-------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTCTTTTCC
T ss_pred             HHHHHHHhhhcccccCchh-------hcCHHHHHHHHHHCCCCchhCCCHH----HHhcCccccCh
Confidence            3 33344443322222111       1223589999999999999999997    99999999865

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=6.3e-48  Score=385.92  Aligned_cols=271  Identities=25%  Similarity=0.346  Sum_probs=208.9

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++...... ......+.+|+.+++.++||||+++++++.+.
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   96 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKD-----TGRIVAIKKFLESDDD-KMVKKIAMREIKLLKQLRHENLVNLLEVCKKK   96 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETT-----TCCEEEEEEEESCSSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECC-----CCceEEEEEEecCCCc-hHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC
Confidence            46889999999999999999999886     6789999998543211 22334566799999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+++++|..++...  ..++...                            ++.++.||+.||+|||++||+
T Consensus        97 ~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~----------------------------~~~~~~qi~~~l~~LH~~~iv  146 (331)
T 4aaa_A           97 KRWYLVFEFVDHTILDDLELFP--NGLDYQV----------------------------VQKYLFQIINGIGFCHSHNII  146 (331)
T ss_dssp             TEEEEEEECCSEEHHHHHHHST--TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEecCCcchHHHHHhhc--cCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEE
Confidence            9999999999998888775543  2222222                            246789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.+....                                                
T Consensus       147 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------------------------------------------------  178 (331)
T 4aaa_A          147 HRDIKPENILVSQSGVVKLCDFGFARTLAAPG------------------------------------------------  178 (331)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCTTC-------------------------------------------------------
T ss_pred             ccCcChheEEEcCCCcEEEEeCCCceeecCCc------------------------------------------------
Confidence            99999999999999999999999984332100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .......||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.
T Consensus       179 ------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (331)
T 4aaa_A          179 ------------------------------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD  228 (331)
T ss_dssp             -----------------------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ------------------------------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          011234689999999999876 6899999999999999999999999998


Q ss_pred             ChHHHHHHHhcC-------------------CCCCCCCCCCCchh---HHhhhhHHHHHHHhccCCcccccCCCCChHHh
Q 010140          401 NNEKTLINILKK-------------------PLTFPRIGVSSSKE---FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI  458 (517)
Q Consensus       401 ~~~~~~~~i~~~-------------------~~~~p~~~~~~~~~---~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~el  458 (517)
                      ...+.+..+...                   ....+.........   ...+..+.+||.+||+.||++|||+.    |+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~----el  304 (331)
T 4aaa_A          229 SDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCA----EL  304 (331)
T ss_dssp             SHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGG----GG
T ss_pred             CcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHH----HH
Confidence            877666555421                   11111111111100   01234689999999999999999998    99


Q ss_pred             hcCCCcCCCCcc
Q 010140          459 KRHEFFKGINWA  470 (517)
Q Consensus       459 l~hp~f~~~~~~  470 (517)
                      ++||||+..+|.
T Consensus       305 l~hp~f~~~~~~  316 (331)
T 4aaa_A          305 LHHDFFQMDGFA  316 (331)
T ss_dssp             GGSHHHHGGGHH
T ss_pred             hcCchhccCChh
Confidence            999999876654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=379.65  Aligned_cols=253  Identities=24%  Similarity=0.337  Sum_probs=193.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      ++|+++++||+|+||+||+|+++.     +++.||||++......... ......|+..+..+ +||||+++++++.+++
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~-~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~  130 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKE-----DGRLYAVKRSMSPFRGPKD-RARKLAEVGSHEKVGQHPCCVRLEQAWEEGG  130 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETT-----TSCEEEEEEESSSCCSHHH-HHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hheeeeheeccCCCeEEEEEEECC-----CCeEEEEEEecccccChHH-HHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC
Confidence            579999999999999999999986     6789999987543211112 22333455555444 9999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|+||||+ +++|.+++.... ..+++..                            ++.++.||+.||+|||++||+|
T Consensus       131 ~~~lv~e~~-~~~L~~~~~~~~-~~l~~~~----------------------------~~~i~~qi~~aL~~LH~~~ivH  180 (311)
T 3p1a_A          131 ILYLQTELC-GPSLQQHCEAWG-ASLPEAQ----------------------------VWGYLRDTLLALAHLHSQGLVH  180 (311)
T ss_dssp             EEEEEEECC-CCBHHHHHHHHC-SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEecc-CCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEec
Confidence            999999999 789988886642 2233222                            2378899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||++......                                                  
T Consensus       181 ~Dikp~NIll~~~~~~kl~DFG~a~~~~~~--------------------------------------------------  210 (311)
T 3p1a_A          181 LDVKPANIFLGPRGRCKLGDFGLLVELGTA--------------------------------------------------  210 (311)
T ss_dssp             CCCSGGGEEECGGGCEEECCCTTCEECC----------------------------------------------------
T ss_pred             CCCCHHHEEECCCCCEEEccceeeeecccC--------------------------------------------------
Confidence            999999999999999999999998433210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                   .......||+.|+|||++.+ .++.++|||||||++|||++|..||.+...
T Consensus       211 -----------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~  260 (311)
T 3p1a_A          211 -----------------------------GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG  260 (311)
T ss_dssp             ---------------------------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH
T ss_pred             -----------------------------CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                                         01123469999999999987 699999999999999999999777765432


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                         ...+...... +...      .....++.+||.+||+.||++|||+.    |+++||||+.
T Consensus       261 ---~~~~~~~~~~-~~~~------~~~~~~l~~li~~~L~~dP~~Rpt~~----ell~hp~~~~  310 (311)
T 3p1a_A          261 ---WQQLRQGYLP-PEFT------AGLSSELRSVLVMMLEPDPKLRATAE----ALLALPVLRQ  310 (311)
T ss_dssp             ---HHHHTTTCCC-HHHH------TTSCHHHHHHHHHHSCSSTTTSCCHH----HHHTSGGGSC
T ss_pred             ---HHHHhccCCC-cccc------cCCCHHHHHHHHHHcCCChhhCcCHH----HHHhCccccC
Confidence               2333332211 1000      11234589999999999999999998    9999999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.7e-47  Score=379.86  Aligned_cols=261  Identities=26%  Similarity=0.358  Sum_probs=200.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeec-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEA-  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~-  160 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++....      ...+.+|+.+|+.+. ||||+++++++.+ 
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~  103 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINIT-----NNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDP  103 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECSCC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECT
T ss_pred             CCceEEEEEecccCCeEEEEEEECC-----CCcEEEEEEecccc------hHHHHHHHHHHHHcCCCCCEEEeeeeeccC
Confidence            4789999999999999999999876     67899999997432      245667999999997 9999999999987 


Q ss_pred             -CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          161 -SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       161 -~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                       ....++||||+++++|.+++..     ++..                            .++.++.||+.||+|||++|
T Consensus       104 ~~~~~~lv~e~~~~~~l~~~~~~-----~~~~----------------------------~~~~~~~qi~~~l~~lH~~~  150 (330)
T 3nsz_A          104 VSRTPALVFEHVNNTDFKQLYQT-----LTDY----------------------------DIRFYMYEILKALDYCHSMG  150 (330)
T ss_dssp             TTCCEEEEEECCCCCCHHHHGGG-----CCHH----------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEEeccCchhHHHHHHh-----CCHH----------------------------HHHHHHHHHHHHHHHHHhCC
Confidence             6789999999999999887643     2222                            22467899999999999999


Q ss_pred             ceeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |+||||||+|||++.++ .+||+|||+++.....                                              
T Consensus       151 ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~----------------------------------------------  184 (330)
T 3nsz_A          151 IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG----------------------------------------------  184 (330)
T ss_dssp             EECCCCSGGGEEEETTTTEEEECCCTTCEECCTT----------------------------------------------
T ss_pred             eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC----------------------------------------------
Confidence            99999999999999777 8999999998543210                                              


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       .......||+.|+|||++.+ ..++.++|||||||++|+|++|..||
T Consensus       185 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~  231 (330)
T 3nsz_A          185 ---------------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF  231 (330)
T ss_dssp             ---------------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             ---------------------------------CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCc
Confidence                                             01223468999999999987 56899999999999999999999999


Q ss_pred             CCC-ChHHHHHHHhc-------------CCCCCCCC---------------CCCCchhHHhhhhHHHHHHHhccCCcccc
Q 010140          398 KGE-NNEKTLINILK-------------KPLTFPRI---------------GVSSSKEFEEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       398 ~~~-~~~~~~~~i~~-------------~~~~~p~~---------------~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  448 (517)
                      ... ...+.+..+..             .....+..               ............++.+||.+||+.||++|
T Consensus       232 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  311 (330)
T 3nsz_A          232 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSR  311 (330)
T ss_dssp             SCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGS
T ss_pred             ccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccC
Confidence            543 33333222211             11111000               00000000123468999999999999999


Q ss_pred             cCCCCChHHhhcCCCcCCCCcc
Q 010140          449 IGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       449 ~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      ||+.    |+|+||||+++.|+
T Consensus       312 pta~----e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          312 LTAR----EAMEHPYFYTVVKD  329 (330)
T ss_dssp             CCHH----HHHTSGGGTTCC--
T ss_pred             CCHH----HHhcCccHhhhccC
Confidence            9998    99999999998875

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.8e-47  Score=390.30  Aligned_cols=268  Identities=28%  Similarity=0.431  Sum_probs=208.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CC-----Ccc
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HP-----FLP  152 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-Hp-----nIv  152 (517)
                      +....++|++++.||+|+||+||+|+++.     +++.||||++....    .....+..|+.+++.+. |+     +|+
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~iv  119 (382)
T 2vx3_A           49 GEKWMDRYEIDSLIGKGSFGQVVKAYDRV-----EQEWVAIKIIKNKK----AFLNQAQIEVRLLELMNKHDTEMKYYIV  119 (382)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETT-----TTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHCSSGGGGGBC
T ss_pred             CCEeeeeEEEEEEEeecCCEEEEEEEEcC-----CCcEEEEEEEeccH----HHHHHHHHHHHHHHHHHhcccccceeEE
Confidence            34456899999999999999999999876     67899999997653    23345566888888874 55     499


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ++++++...+..||||||+. |+|.+++.......++....                            +.++.||+.||
T Consensus       120 ~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~al  170 (382)
T 2vx3_A          120 HLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLT----------------------------RKFAQQMCTAL  170 (382)
T ss_dssp             CEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHH----------------------------HHHHHHHHHHH
T ss_pred             EeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHH----------------------------HHHHHHHHHHH
Confidence            99999999999999999995 69999988764444443332                            37789999999


Q ss_pred             HHHH--hcCceeccCCCCceEEc--cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          233 EYLH--MMGIVYRDLKPENVLVR--EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       233 ~yLH--~~~iiHrDLKp~NILl~--~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      .|||  +.|||||||||+|||++  .++.+||+|||+++....                                     
T Consensus       171 ~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~-------------------------------------  213 (382)
T 2vx3_A          171 LFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ-------------------------------------  213 (382)
T ss_dssp             HHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC-------------------------------------
T ss_pred             HHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc-------------------------------------
Confidence            9999  57999999999999995  477899999999843210                                     


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~  388 (517)
                                                                  .....+||+.|+|||++.+..++.++|||||||++|
T Consensus       214 --------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~  249 (382)
T 2vx3_A          214 --------------------------------------------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILV  249 (382)
T ss_dssp             --------------------------------------------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHH
Confidence                                                        122347999999999999999999999999999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHhcCCCCCCC-----------------------------------CCCCC----------
Q 010140          389 EMLYGTTPFKGENNEKTLINILKKPLTFPR-----------------------------------IGVSS----------  423 (517)
Q Consensus       389 elltG~~Pf~~~~~~~~~~~i~~~~~~~p~-----------------------------------~~~~~----------  423 (517)
                      ||++|++||.+.+..+.+..+.......+.                                   .....          
T Consensus       250 elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  329 (382)
T 2vx3_A          250 EMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETG  329 (382)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTT
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhcccc
Confidence            999999999998888777766542111100                                   00000          


Q ss_pred             ----------chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          424 ----------SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       424 ----------~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                                .....+..++.+||.+||+.||++|||+.    |+|+||||+...+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~----e~L~hp~f~~~~~  381 (382)
T 2vx3_A          330 GPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPY----YALQHSFFKKTAD  381 (382)
T ss_dssp             SGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHH----HHTTSGGGCC---
T ss_pred             CCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHH----HHhcCcccccCCC
Confidence                      00011223689999999999999999998    9999999997654

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-48  Score=397.87  Aligned_cols=280  Identities=24%  Similarity=0.282  Sum_probs=192.4

Q ss_pred             CCceE-EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee--c
Q 010140           84 DHFRL-LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE--A  160 (517)
Q Consensus        84 ~~y~i-~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--~  160 (517)
                      +.|++ .++||+|+||.||+|+++..   .+++.||||++....     ....+.+|+.+|+.++||||++++++|.  .
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~---~~~~~vaiK~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   91 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDG---KDDKDYALKQIEGTG-----ISMSACREIALLRELKHPNVISLQKVFLSHA   91 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSS---SCCCCEEEEECSSSS-----CCHHHHHHHHHHHHCCCTTBCCCCEEEEETT
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccC---CCCeEEEEEEECCCC-----CCHHHHHHHHHHHhcCCCCeeeEeeEEecCC
Confidence            56777 55899999999999997742   246789999997542     2234567999999999999999999994  5


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+||||||+. |+|.+++.........                     ..........++.|+.||+.||+|||++||
T Consensus        92 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~i~~qi~~al~~LH~~~i  149 (405)
T 3rgf_A           92 DRKVWLLFDYAE-HDLWHIIKFHRASKAN---------------------KKPVQLPRGMVKSLLYQILDGIHYLHANWV  149 (405)
T ss_dssp             TTEEEEEEECCS-EEHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCC-CCHHHHHHHhcccccc---------------------ccccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            778999999995 6888877543110000                     000011222345789999999999999999


Q ss_pred             eeccCCCCceEE----ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          241 VYRDLKPENVLV----REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       241 iHrDLKp~NILl----~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +||||||+||||    +.++.+||+|||+++.+.....                                          
T Consensus       150 vH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~------------------------------------------  187 (405)
T 3rgf_A          150 LHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK------------------------------------------  187 (405)
T ss_dssp             CCCCCCGGGEEECCSSTTTTCEEECCTTCCC-------------------------------------------------
T ss_pred             eCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCc------------------------------------------
Confidence            999999999999    6778999999999854321000                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~  395 (517)
                                                       ........+||+.|+|||++.+.. ++.++|||||||++|+|++|.+
T Consensus       188 ---------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~  234 (405)
T 3rgf_A          188 ---------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEP  234 (405)
T ss_dssp             ------------------------------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCC
Confidence                                             001123457999999999998854 8999999999999999999999


Q ss_pred             CCCCCCh---------HHHHHHHhcCCCCCCCCCCCCch-----------------------h------HHhhhhHHHHH
Q 010140          396 PFKGENN---------EKTLINILKKPLTFPRIGVSSSK-----------------------E------FEEVVKLQDLI  437 (517)
Q Consensus       396 Pf~~~~~---------~~~~~~i~~~~~~~p~~~~~~~~-----------------------~------~~~~~~l~dLi  437 (517)
                      ||.+...         .+.+..+.......+........                       .      ......+.+||
T Consensus       235 pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll  314 (405)
T 3rgf_A          235 IFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLL  314 (405)
T ss_dssp             TTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHH
T ss_pred             CCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHH
Confidence            9986554         23444443211111110000000                       0      00134588999


Q ss_pred             HHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          438 SKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       438 ~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      .+||+.||.+|||+.    |+|+||||.+..|...
T Consensus       315 ~~~L~~dP~~R~ta~----e~L~hp~f~~~~~~~~  345 (405)
T 3rgf_A          315 QKLLTMDPIKRITSE----QAMQDPYFLEDPLPTS  345 (405)
T ss_dssp             HHHSCSSGGGSCCHH----HHHTSGGGTSSSCCCS
T ss_pred             HHHccCCcccCCCHH----HHhcChhhccCCCCcc
Confidence            999999999999998    9999999998776543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1e-47  Score=386.81  Aligned_cols=276  Identities=25%  Similarity=0.368  Sum_probs=218.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHH--------------HhHHHHHHHHHHh
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK--------------LHRADMEKVILTM  145 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~--------------~~~~~~E~~il~~  145 (517)
                      ....++|++++.||+|+||.||+|++       +++.||||++..........              ...+.+|+.+++.
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~V~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   99 (348)
T 2pml_X           27 DKYINDYRIIRTLNQGKFNKIILCEK-------DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITD   99 (348)
T ss_dssp             CEEETTEEEEEEEECCSSCCEEEEEE-------TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTT
T ss_pred             ccccCceEEEEEEcCCCCeEEEEEEc-------CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHh
Confidence            34568999999999999999999988       25889999998664321111              1677789999999


Q ss_pred             cCCCCccceeeeeecCceeEEEEEecCCCchhHH------HHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhh
Q 010140          146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA------RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFF  219 (517)
Q Consensus       146 l~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~------l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  219 (517)
                      ++||||+++++++.+.+..|+||||+++|+|.++      +.......++.                            .
T Consensus       100 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~----------------------------~  151 (348)
T 2pml_X          100 IKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPI----------------------------Q  151 (348)
T ss_dssp             CCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCH----------------------------H
T ss_pred             CCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCH----------------------------H
Confidence            9999999999999999999999999999999887      33321222222                            2


Q ss_pred             hhhHHHHHHHHHHHHHHh-cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCC
Q 010140          220 NYRFYAAETLLALEYLHM-MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCAT  298 (517)
Q Consensus       220 ~~~~~~~qi~~aL~yLH~-~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (517)
                      .++.++.||+.||.|||+ +||+||||||+|||++.++.+||+|||++......                          
T Consensus       152 ~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--------------------------  205 (348)
T 2pml_X          152 VIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK--------------------------  205 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCCcEEEeccccccccccc--------------------------
Confidence            234788999999999999 99999999999999999999999999998432210                          


Q ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCc-
Q 010140          299 PMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGS-  376 (517)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~-  376 (517)
                                                                            ......||+.|+|||++.+. .++. 
T Consensus       206 ------------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~  231 (348)
T 2pml_X          206 ------------------------------------------------------KIKGSRGTYEFMPPEFFSNESSYNGA  231 (348)
T ss_dssp             ------------------------------------------------------EECSSCSCGGGCCGGGGSSCCCEEHH
T ss_pred             ------------------------------------------------------cccCCCCCcCccCchhhcCCCCCCcc
Confidence                                                                  11234689999999999987 5666 


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCc----------hhHHhhhhHHHHHHHhccCCc
Q 010140          377 AVDWWTLGVFLYEMLYGTTPFKGENN-EKTLINILKKPLTFPRIGVSSS----------KEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       377 ~~DiWSlGvil~elltG~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~----------~~~~~~~~l~dLi~~~L~~dP  445 (517)
                      ++|||||||++|+|++|..||.+... .+....+......+|.......          .......++.+||.+||+.||
T Consensus       232 ~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  311 (348)
T 2pml_X          232 KVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNP  311 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSG
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCCh
Confidence            99999999999999999999998877 7777777776655553211000          001122358999999999999


Q ss_pred             ccccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          446 KKRIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       446 ~~R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      .+||++.    |+++||||++.+|..+..
T Consensus       312 ~~Rps~~----e~l~hp~f~~~~~~~~~~  336 (348)
T 2pml_X          312 AERITSE----DALKHEWLADTNIEDLRE  336 (348)
T ss_dssp             GGSCCHH----HHHTSGGGTTCCHHHHHH
T ss_pred             hhCCCHH----HHhcCccccCCCHHHHHH
Confidence            9999998    999999999999976543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=384.78  Aligned_cols=260  Identities=28%  Similarity=0.397  Sum_probs=199.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC--CCccceeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH--PFLPTLYAEF  158 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~  158 (517)
                      +..++|++++.||+|+||.||+|.+.      +++.||||++...... ......+.+|+.+|+.++|  |||+++++++
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   78 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNE------KKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   78 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECT------TSCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeC------CCCEEEEEEeeccccc-hHHHHHHHHHHHHHHhhhhcCCceEEEeeeE
Confidence            44578999999999999999999874      4678999998644221 2344667789999999976  9999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++.+|+|||+ .+|+|.+++....  .++...                            ++.|+.||+.||+|||++
T Consensus        79 ~~~~~~~lv~e~-~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~al~~lH~~  127 (343)
T 3dbq_A           79 ITDQYIYMVMEC-GNIDLNSWLKKKK--SIDPWE----------------------------RKSYWKNMLEAVHTIHQH  127 (343)
T ss_dssp             ECSSEEEEEECC-CSEEHHHHHHHSC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             eeCCEEEEEEeC-CCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            999999999995 5889999987642  233222                            246789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++ ++.+||+|||+++.......                                            
T Consensus       128 ~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~--------------------------------------------  162 (343)
T 3dbq_A          128 GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT--------------------------------------------  162 (343)
T ss_dssp             TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-------------------------------------------------
T ss_pred             CeecCCCCcceEEEE-CCcEEEeecccccccCcccc--------------------------------------------
Confidence            999999999999996 68899999999854321100                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----------CCCCccchHHHHHHHH
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----------QGHGSAVDWWTLGVFL  387 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----------~~~~~~~DiWSlGvil  387 (517)
                                                      .......+||+.|+|||++.+           ..++.++|||||||++
T Consensus       163 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il  210 (343)
T 3dbq_A          163 --------------------------------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCIL  210 (343)
T ss_dssp             ---------------------------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHH
T ss_pred             --------------------------------cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHH
Confidence                                            011234579999999999965           5689999999999999


Q ss_pred             HHHhhCCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          388 YEMLYGTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |+|++|..||.+.... ..+..+........... ...      .++.+||.+||+.||.+|||+.    |+++||||+.
T Consensus       211 ~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~l~~li~~~L~~dp~~Rpt~~----e~l~hp~~~~  279 (343)
T 3dbq_A          211 YYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPD-IPE------KDLQDVLKCCLKRDPKQRISIP----ELLAHPYVQI  279 (343)
T ss_dssp             HHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCC-CSC------HHHHHHHHHHTCSSTTTSCCHH----HHHTSHHHHS
T ss_pred             HHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcc-cCC------HHHHHHHHHHcCCChhHCCCHH----HHHhCccccc
Confidence            9999999999875443 44444544332221111 111      2489999999999999999998    9999999974

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=5e-48  Score=392.14  Aligned_cols=282  Identities=18%  Similarity=0.212  Sum_probs=216.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++++.||+|+||.||+|+........+++.||||++.....  ......+.+|+.+++.++||||+++++++.
T Consensus        67 ~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~  144 (367)
T 3l9p_A           67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS--EQDELDFLMEALIISKFNHQNIVRCIGVSL  144 (367)
T ss_dssp             BCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccC--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            455688999999999999999999976432233678899999864321  123345677999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +....|+|||||+||+|.+++..........                       .......+..++.||+.||+|||++|
T Consensus       145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~-----------------------~~~~~~~~~~i~~qi~~aL~~LH~~~  201 (367)
T 3l9p_A          145 QSLPRFILLELMAGGDLKSFLRETRPRPSQP-----------------------SSLAMLDLLHVARDIACGCQYLEENH  201 (367)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHSCCSSSC-----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHhhccccCcc-----------------------ccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999997653211100                       01112233478899999999999999


Q ss_pred             ceeccCCCCceEEccCC---cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDG---HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      |+||||||+|||++.+|   .+||+|||+++.+....                                           
T Consensus       202 ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~-------------------------------------------  238 (367)
T 3l9p_A          202 FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG-------------------------------------------  238 (367)
T ss_dssp             CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHS-------------------------------------------
T ss_pred             eeCCCCChhhEEEecCCCCceEEECCCcccccccccc-------------------------------------------
Confidence            99999999999999555   59999999984322100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                       .........||+.|+|||++.+..++.++|||||||++|||++ |..
T Consensus       239 ---------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~  285 (367)
T 3l9p_A          239 ---------------------------------YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM  285 (367)
T ss_dssp             ---------------------------------SCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------------------------------ccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                                             0011223468999999999999899999999999999999998 999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRS  474 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~  474 (517)
                      ||.+....+.+..+.......+...        .+..+.+||.+||+.||.+||++.    ++++|.++-.-+.+.+..
T Consensus       286 pf~~~~~~~~~~~i~~~~~~~~~~~--------~~~~l~~li~~~l~~dP~~Rps~~----eil~~l~~~~~~~~~~~~  352 (367)
T 3l9p_A          286 PYPSKSNQEVLEFVTSGGRMDPPKN--------CPGPVYRIMTQCWQHQPEDRPNFA----IILERIEYCTQDPDVINT  352 (367)
T ss_dssp             SSTTCCHHHHHHHHHTTCCCCCCTT--------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHHHHHCHHHHTC
T ss_pred             CCCCCCHHHHHHHHHcCCCCCCCcc--------CCHHHHHHHHHHcCCCHhHCcCHH----HHHHHHHHHhhChhhccC
Confidence            9999998888888776653322211        122489999999999999999998    999988775444443333

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.3e-47  Score=372.95  Aligned_cols=261  Identities=24%  Similarity=0.302  Sum_probs=193.8

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++..++|++++.||+|+||.||+|++..     +++.||||++...... ......+..+...++.++||||+++++++.
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~   76 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVP-----SGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALF   76 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEC---CH-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecC-----CCeEEEEEEeecccCc-HHHHHHHHHHHHHHHhCCCCeEEEEeeeee
Confidence            4567899999999999999999999876     6789999999765322 222333444556688889999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhC--CCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQ--PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +++..|+||||++ |+|.+++...  ....++..                            .++.++.||+.||+|||+
T Consensus        77 ~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~----------------------------~~~~i~~qi~~~l~~lH~  127 (290)
T 3fme_A           77 REGDVWICMELMD-TSLDKFYKQVIDKGQTIPED----------------------------ILGKIAVSIVKALEHLHS  127 (290)
T ss_dssp             CSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHH----------------------------HHHHHHHHHHHHHHHHhh
Confidence            9999999999996 5888777542  11222222                            234788999999999999


Q ss_pred             c-CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 M-GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      + ||+||||||+|||++.++.+||+|||+++.....                                            
T Consensus       128 ~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------  163 (290)
T 3fme_A          128 KLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD--------------------------------------------  163 (290)
T ss_dssp             HSCCCCCCCSGGGCEECTTCCEEBCCC-----------------------------------------------------
T ss_pred             cCCeecCCCCHHHEEECCCCCEEEeecCCccccccc--------------------------------------------
Confidence            8 9999999999999999999999999998433210                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh----cCCCCCccchHHHHHHHHHHHhh
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI----SGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l----~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                         .......||+.|+|||++    .+..++.++|||||||++|+|++
T Consensus       164 -----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~  208 (290)
T 3fme_A          164 -----------------------------------VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI  208 (290)
T ss_dssp             -----------------------------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHH
Confidence                                               011223689999999997    45568999999999999999999


Q ss_pred             CCCCCCCC-ChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGE-NNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~-~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |..||... .....+........ ..+..  .      .+.++.+||.+||+.||++|||+.    |+++||||+.
T Consensus       209 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~li~~~l~~~p~~Rpt~~----e~l~hp~f~~  272 (290)
T 3fme_A          209 LRFPYDSWGTPFQQLKQVVEEPSPQLPAD--K------FSAEFVDFTSQCLKKNSKERPTYP----ELMQHPFFTL  272 (290)
T ss_dssp             TSCSSCCCSCHHHHHHHHHHSCCCCCCTT--T------SCHHHHHHHHHHTCSSGGGSCCHH----HHTTSHHHHH
T ss_pred             CCCCccccCchHHHHHHHhccCCCCcccc--c------CCHHHHHHHHHHhhcChhhCcCHH----HHHhCccccc
Confidence            99999863 34444444444332 22211  1      122589999999999999999998    9999999974

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=6.8e-47  Score=383.49  Aligned_cols=266  Identities=24%  Similarity=0.313  Sum_probs=206.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC--
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS--  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--  161 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++.....  ......+.+|+.+|+.++||||+++++++...  
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   99 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNL-----NKVRVAIKKISPFEH--QTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   99 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECCTTC--HHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             ccEEEEEEeecCCCeEEEEEEECC-----CCeEEEEEEeccccC--cHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc
Confidence            689999999999999999999876     678999999874321  23345677899999999999999999999654  


Q ss_pred             ---ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          162 ---HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       162 ---~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                         ...|+||||+. |+|.+++...   .++...                            ++.++.||+.||+|||++
T Consensus       100 ~~~~~~~iv~e~~~-~~L~~~l~~~---~~~~~~----------------------------~~~i~~qi~~aL~~LH~~  147 (364)
T 3qyz_A          100 EQMKDVYIVQDLME-TDLYKLLKTQ---HLSNDH----------------------------ICYFLYQILRGLKYIHSA  147 (364)
T ss_dssp             TTCCCEEEEEECCS-EEHHHHHHHC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEEEcccC-cCHHHHHHhC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence               47899999995 6999988653   233222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++.......                                            
T Consensus       148 ~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--------------------------------------------  183 (364)
T 3qyz_A          148 NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD--------------------------------------------  183 (364)
T ss_dssp             TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGC--------------------------------------------
T ss_pred             CeecCCCChHhEEECCCCCEEEEeCcceEecCCCCC--------------------------------------------
Confidence            999999999999999999999999999854321100                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     ........+||+.|+|||++.+. .++.++|||||||++|+|++|+.||
T Consensus       184 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  232 (364)
T 3qyz_A          184 -------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF  232 (364)
T ss_dssp             -------------------------------BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             -------------------------------ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCC
Confidence                                           00112345799999999987654 4899999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCC--------------------CCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLTF--------------------PRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~--------------------p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .+.+..+.+..+.......                    +.........  .....++.+||.+||+.||.+|||+.   
T Consensus       233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~---  309 (364)
T 3qyz_A          233 PGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE---  309 (364)
T ss_dssp             CCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHH---
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHH---
Confidence            9988777666654311110                    0000000000  01234689999999999999999998   


Q ss_pred             HHhhcCCCcCCC
Q 010140          456 VEIKRHEFFKGI  467 (517)
Q Consensus       456 ~ell~hp~f~~~  467 (517)
                       |+++||||+..
T Consensus       310 -e~l~hp~~~~~  320 (364)
T 3qyz_A          310 -QALAHPYLEQY  320 (364)
T ss_dssp             -HHHTSGGGTTT
T ss_pred             -HHhcCcchhhc
Confidence             99999999975

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3.3e-47  Score=389.72  Aligned_cols=267  Identities=27%  Similarity=0.449  Sum_probs=200.9

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ...+|++++.||+|+||.||+|++..     +++ ||+|.+....       ....+|+.+|+.++||||++++++|...
T Consensus        38 ~~~~Y~~~~~lG~G~~g~V~~a~~~~-----~~~-~aikk~~~~~-------~~~~~E~~il~~l~h~niv~l~~~~~~~  104 (394)
T 4e7w_A           38 REIAYTNCKVIGNGSFGVVFQAKLVE-----SDE-VAIKKVLQDK-------RFKNRELQIMRIVKHPNVVDLKAFFYSN  104 (394)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEETT-----TEE-EEEEEEECCT-------TSCCHHHHHHHTCCCTTBCCEEEEEEEE
T ss_pred             ccceEEEeEEEeeCCCeEEEEEEECC-----CCe-EEEEEEecCc-------chHHHHHHHHHhCCCCCcceEEEEEEec
Confidence            34679999999999999999999875     334 7888775431       1123599999999999999999999543


Q ss_pred             ------ceeEEEEEecCCCchhHHHHhC--CCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          162 ------HYSCLVMEYCPGGDLYAARQRQ--PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       162 ------~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                            ..+|+|||||++ +|...+...  ....++.                            ..++.|+.||+.||+
T Consensus       105 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~----------------------------~~~~~~~~qi~~aL~  155 (394)
T 4e7w_A          105 GDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPM----------------------------LLIKLYMYQLLRSLA  155 (394)
T ss_dssp             SSSSSCEEEEEEEECCSE-EHHHHHHHHHHTTSCCCH----------------------------HHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEeeccCc-cHHHHHHHHHhhcCCCCH----------------------------HHHHHHHHHHHHHHH
Confidence                  348999999966 444433321  1122222                            223478899999999


Q ss_pred             HHHhcCceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      |||++||+||||||+||||+ .++.+||+|||+++.+..                                         
T Consensus       156 ~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~-----------------------------------------  194 (394)
T 4e7w_A          156 YIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA-----------------------------------------  194 (394)
T ss_dssp             HHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT-----------------------------------------
T ss_pred             HHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC-----------------------------------------
Confidence            99999999999999999999 799999999999854321                                         


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~ell  391 (517)
                                                            .......+||+.|+|||++.+.. ++.++|||||||++|||+
T Consensus       195 --------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell  236 (394)
T 4e7w_A          195 --------------------------------------GEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELM  236 (394)
T ss_dssp             --------------------------------------TCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                  01122457899999999998764 899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcCC-----------------CCCCCCCCCCchh-H--HhhhhHHHHHHHhccCCcccccCC
Q 010140          392 YGTTPFKGENNEKTLINILKKP-----------------LTFPRIGVSSSKE-F--EEVVKLQDLISKLLVKNPKKRIGS  451 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~~-----------------~~~p~~~~~~~~~-~--~~~~~l~dLi~~~L~~dP~~R~t~  451 (517)
                      +|++||.+.+..+.+..+....                 ..++......... +  ....++.+||.+||+.||.+|||+
T Consensus       237 ~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  316 (394)
T 4e7w_A          237 QGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTA  316 (394)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCH
Confidence            9999999998877766665311                 1111111110000 0  123468999999999999999999


Q ss_pred             CCChHHhhcCCCcCCCCccccc
Q 010140          452 LKGSVEIKRHEFFKGINWALIR  473 (517)
Q Consensus       452 ~~~~~ell~hp~f~~~~~~~~~  473 (517)
                      .    |+++||||+++.|....
T Consensus       317 ~----e~l~hp~f~~~~~~~~~  334 (394)
T 4e7w_A          317 I----EALCHPFFDELRTGEAR  334 (394)
T ss_dssp             H----HHHTSGGGSTTTSSCCC
T ss_pred             H----HHhcChhhhhhcccccc
Confidence            8    99999999999886553

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.3e-47  Score=392.68  Aligned_cols=264  Identities=23%  Similarity=0.345  Sum_probs=202.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC--------CCCc
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD--------HPFL  151 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--------HpnI  151 (517)
                      .+..++|+++++||+|+||+||+|++..     +++.||||++....    .....+.+|+.+|+.+.        ||||
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~~~i  103 (397)
T 1wak_A           33 DLFNGRYHVIRKLGWGHFSTVWLSWDIQ-----GKKFVAMKVVKSAE----HYTETALDEIRLLKSVRNSDPNDPNREMV  103 (397)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHSCTTCGGGGGB
T ss_pred             hhcCCeEEEEEEeeecCCeeEEEEEecC-----CCeEEEEEEEecCC----cchHHHHHHHHHHHHHhhcCCCCCCccee
Confidence            3445889999999999999999999876     67899999998653    23455667999999985        7889


Q ss_pred             cceeeeee----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHH
Q 010140          152 PTLYAEFE----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE  227 (517)
Q Consensus       152 v~l~~~~~----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  227 (517)
                      ++++++|.    +...+||||||+ +++|.+++.......++...+                            +.++.|
T Consensus       104 v~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~----------------------------~~i~~q  154 (397)
T 1wak_A          104 VQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCV----------------------------KKIIQQ  154 (397)
T ss_dssp             CCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHH----------------------------HHHHHH
T ss_pred             eeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHH----------------------------HHHHHH
Confidence            99999997    667899999999 778877776654333443333                            478899


Q ss_pred             HHHHHHHHHhc-CceeccCCCCceEEccCC-------------------------------------------------c
Q 010140          228 TLLALEYLHMM-GIVYRDLKPENVLVREDG-------------------------------------------------H  257 (517)
Q Consensus       228 i~~aL~yLH~~-~iiHrDLKp~NILl~~~~-------------------------------------------------~  257 (517)
                      |+.||+|||++ ||+||||||+||||+.++                                                 .
T Consensus       155 i~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
T 1wak_A          155 VLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLK  234 (397)
T ss_dssp             HHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCC
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccc
Confidence            99999999999 999999999999998775                                                 7


Q ss_pred             EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCc
Q 010140          258 IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQ  337 (517)
Q Consensus       258 vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (517)
                      +||+|||+++....                                                                  
T Consensus       235 ~kl~DfG~a~~~~~------------------------------------------------------------------  248 (397)
T 1wak_A          235 VKIADLGNACWVHK------------------------------------------------------------------  248 (397)
T ss_dssp             EEECCGGGCEETTB------------------------------------------------------------------
T ss_pred             eEeccccccccccc------------------------------------------------------------------
Confidence            99999999843210                                                                  


Q ss_pred             cccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh------HHHHHHHhc
Q 010140          338 ELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN------EKTLINILK  411 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~------~~~~~~i~~  411 (517)
                                     .....+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+.      ...+..+..
T Consensus       249 ---------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~  313 (397)
T 1wak_A          249 ---------------HFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIE  313 (397)
T ss_dssp             ---------------CSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHH
T ss_pred             ---------------cCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHH
Confidence                           12234699999999999999999999999999999999999999986542      222222221


Q ss_pred             CCCCCCC---------------------CC--CCC----------chhHHhhhhHHHHHHHhccCCcccccCCCCChHHh
Q 010140          412 KPLTFPR---------------------IG--VSS----------SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEI  458 (517)
Q Consensus       412 ~~~~~p~---------------------~~--~~~----------~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~el  458 (517)
                      .....|.                     ..  ...          .........+.+||.+||+.||++|||+.    |+
T Consensus       314 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----e~  389 (397)
T 1wak_A          314 LLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAA----EC  389 (397)
T ss_dssp             HHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHH----HH
T ss_pred             hcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHH----HH
Confidence            0000000                     00  000          00112345689999999999999999998    99


Q ss_pred             hcCCCcCC
Q 010140          459 KRHEFFKG  466 (517)
Q Consensus       459 l~hp~f~~  466 (517)
                      |+||||++
T Consensus       390 l~hp~~~~  397 (397)
T 1wak_A          390 LRHPWLNS  397 (397)
T ss_dssp             HTSGGGGC
T ss_pred             hhCccccC
Confidence            99999974

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=5.7e-47  Score=377.73  Aligned_cols=272  Identities=26%  Similarity=0.346  Sum_probs=209.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEF  158 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~  158 (517)
                      ..++|++++.||+|+||.||+|++...    .++.||+|++...... ......+.+|+.+++.+   +||||+++++++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~----~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~   83 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKN----GGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVC   83 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTT----TTEEEEEEEEEEEBCT-TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCC----CCEEEEEEEeccCccc-ccCCchhhHHHHHHHhhhccCCCCeEeeeeee
Confidence            347899999999999999999998531    5688999998643211 11123445577777766   899999999998


Q ss_pred             e-----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          159 E-----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       159 ~-----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      .     .....|+||||++ |+|.+++.......++....                            +.++.||+.||.
T Consensus        84 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~----------------------------~~~~~qi~~~l~  134 (326)
T 1blx_A           84 TVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETI----------------------------KDMMFQLLRGLD  134 (326)
T ss_dssp             EEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHH----------------------------HHHHHHHHHHHH
T ss_pred             eecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHH----------------------------HHHHHHHHHHHH
Confidence            7     5678999999996 69999988764443443322                            367899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++||+||||||+|||++.++.+||+|||+++.....                                         
T Consensus       135 ~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~-----------------------------------------  173 (326)
T 1blx_A          135 FLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-----------------------------------------  173 (326)
T ss_dssp             HHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG-----------------------------------------
T ss_pred             HHHHCCceeccCCHHHeEEcCCCCEEEecCcccccccCC-----------------------------------------
Confidence            999999999999999999999999999999998432210                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                            .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       174 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  215 (326)
T 1blx_A          174 --------------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRR  215 (326)
T ss_dssp             --------------------------------------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcC
Confidence                                                  011234689999999999998999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCC-----CCCCCC-----------CCCchh--HHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          394 TTPFKGENNEKTLINILKKPL-----TFPRIG-----------VSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~-----~~p~~~-----------~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      ..||.+....+.+..+.....     .++...           ......  ......+++||.+||+.||.+||++.   
T Consensus       216 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~---  292 (326)
T 1blx_A          216 KPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY---  292 (326)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHH---
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHH---
Confidence            999999888777776653110     010000           000000  01233589999999999999999998   


Q ss_pred             HHhhcCCCcCCCCcc
Q 010140          456 VEIKRHEFFKGINWA  470 (517)
Q Consensus       456 ~ell~hp~f~~~~~~  470 (517)
                       |+++||||+++++.
T Consensus       293 -e~l~hp~~~~~~~~  306 (326)
T 1blx_A          293 -SALSHPYFQDLERC  306 (326)
T ss_dssp             -HHHTSGGGTTCCCC
T ss_pred             -HHhcCccccccchh
Confidence             99999999998875

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=5.2e-47  Score=379.54  Aligned_cols=269  Identities=27%  Similarity=0.368  Sum_probs=209.3

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC------Cc
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP------FL  151 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp------nI  151 (517)
                      .+.+..++|++++.||+|+||.||+|.+...    .++.||||++....    .....+.+|+.+++.++|+      +|
T Consensus         8 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~----~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i   79 (339)
T 1z57_A            8 SGDVLSARYEIVDTLGEGAFGKVVECIDHKA----GGRHVAVKIVKNVD----RYCEAARSEIQVLEHLNTTDPNSTFRC   79 (339)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETTT----TTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHHCTTCTTCB
T ss_pred             cCCCccCceEEEEEEecCCCeEEEEEEecCC----CCcEEEEEEEecCC----chhHHHHHHHHHHHHhhhcCCCCceee
Confidence            3445568999999999999999999998432    56899999997543    2345566799999888655      49


Q ss_pred             cceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHH
Q 010140          152 PTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLA  231 (517)
Q Consensus       152 v~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  231 (517)
                      +++++++...+..|+||||+ +++|.+++.......++....                            +.++.||+.|
T Consensus        80 ~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~----------------------------~~~~~qi~~~  130 (339)
T 1z57_A           80 VQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHI----------------------------RKMAYQICKS  130 (339)
T ss_dssp             CCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHH----------------------------HHHHHHHHHH
T ss_pred             EeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHH----------------------------HHHHHHHHHH
Confidence            99999999999999999999 899999988764333333322                            3678999999


Q ss_pred             HHHHHhcCceeccCCCCceEEcc-------------------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccC
Q 010140          232 LEYLHMMGIVYRDLKPENVLVRE-------------------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCS  292 (517)
Q Consensus       232 L~yLH~~~iiHrDLKp~NILl~~-------------------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (517)
                      |+|||++||+||||||+|||++.                   ++.+||+|||+++...                      
T Consensus       131 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~----------------------  188 (339)
T 1z57_A          131 VNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDD----------------------  188 (339)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETT----------------------
T ss_pred             HHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCc----------------------
Confidence            99999999999999999999987                   6689999999984311                      


Q ss_pred             CCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC
Q 010140          293 IPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ  372 (517)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~  372 (517)
                                                                                 ......+||+.|+|||++.+.
T Consensus       189 -----------------------------------------------------------~~~~~~~gt~~y~aPE~~~~~  209 (339)
T 1z57_A          189 -----------------------------------------------------------EHHSTLVSTRHYRAPEVILAL  209 (339)
T ss_dssp             -----------------------------------------------------------SCCCSSCSCGGGCCHHHHTTS
T ss_pred             -----------------------------------------------------------cccccccCCccccChHHhhCC
Confidence                                                                       011234799999999999999


Q ss_pred             CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCC----------------CCCC-------------
Q 010140          373 GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRI----------------GVSS-------------  423 (517)
Q Consensus       373 ~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~----------------~~~~-------------  423 (517)
                      .++.++|||||||++|||++|..||.+.+..+....+.......|..                ....             
T Consensus       210 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (339)
T 1z57_A          210 GWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACK  289 (339)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCc
Confidence            99999999999999999999999999887766554443211111100                0000             


Q ss_pred             ------chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          424 ------SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       424 ------~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                            ........++.+||.+||+.||.+|||+.    |+++||||+.+.
T Consensus       290 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~----ell~hp~f~~~~  336 (339)
T 1z57_A          290 PLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLR----EALKHPFFDLLK  336 (339)
T ss_dssp             CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH----HHTTSGGGGGGG
T ss_pred             chhhhcccchhhHHHHHHHHHHHhCcCcccccCHH----HHhcCHHHHHHh
Confidence                  00012234689999999999999999998    999999998654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.3e-47  Score=375.50  Aligned_cols=264  Identities=27%  Similarity=0.414  Sum_probs=208.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||.||+|++..     +++.||||++...     .....+.+|+.+++.++||||+++++++..
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   95 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKE-----TGQIVAIKQVPVE-----SDLQEIIKEISIMQQCDSPHVVKYYGSYFK   95 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETT-----TCCEEEEEEEETT-----SCCHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECC-----CCCEEEEEecCch-----HHHHHHHHHHHHHHhCCCCCCccEEEEEEe
Confidence            345789999999999999999999876     6789999999754     234566779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++|+|.+++.... ..++...                            +..++.||+.||.|||++||
T Consensus        96 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~~i~~~l~~lH~~~i  146 (314)
T 3com_A           96 NTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDE----------------------------IATILQSTLKGLEYLHFMRK  146 (314)
T ss_dssp             TTEEEEEEECCTTEEHHHHHHHHT-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEeecCCCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999886421 2222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++......                                                
T Consensus       147 ~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~------------------------------------------------  178 (314)
T 3com_A          147 IHRDIKAGNILLNTEGHAKLADFGVAGQLTDT------------------------------------------------  178 (314)
T ss_dssp             ECCCCSGGGEEECTTCCEEECCCTTCEECBTT------------------------------------------------
T ss_pred             cCCCcCHHHEEECCCCCEEEeecccchhhhhh------------------------------------------------
Confidence            99999999999999999999999998433210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       179 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          179 ------------------------------MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             ------------------------------BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ------------------------------ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                                          00112346899999999999988999999999999999999999999988


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCccc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      ........+............      .....+.+||.+||..||.+||++.    ++++||||++..+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~li~~~l~~dp~~Rpt~~----~ll~~~~~~~~~~~~  289 (314)
T 3com_A          229 HPMRAIFMIPTNPPPTFRKPE------LWSDNFTDFVKQCLVKSPEQRATAT----QLLQHPFVRSAKGVS  289 (314)
T ss_dssp             CHHHHHHHHHHSCCCCCSSGG------GSCHHHHHHHHHHTCSCTTTSCCHH----HHTTSHHHHTCCCGG
T ss_pred             ChHHHHHHHhcCCCcccCCcc------cCCHHHHHHHHHHccCChhhCcCHH----HHHhCHHHhcCCcch
Confidence            776666555444322111111      1123589999999999999999998    999999999877653

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.1e-47  Score=378.69  Aligned_cols=286  Identities=26%  Similarity=0.337  Sum_probs=191.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++.+.||+|+||.||+|++..     +++.||||++......  .....+.+|+.+++.++||||+++++++
T Consensus        10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~   82 (303)
T 2vwi_A           10 WSINRDDYELQEVIGSGATAVVQAAYCAP-----KKEKVAIKRINLEKCQ--TSMDELLKEIQAMSQCHHPNIVSYYTSF   82 (303)
T ss_dssp             ---CCCCCEEEEECC---CCCEEEEEC---------CEEEEECCC------------------CCCCCCCTTBCCEEEEE
T ss_pred             cccchhhhhhhheeccccceEEEEEEECC-----CCcEEEEEEEEhhhcc--hhHHHHHHHHHHHhhcCCCCEeeEEEEE
Confidence            34667899999999999999999999876     5788999999765322  3345677799999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ...+..|+||||++||+|.+++.........                      .........+..++.||+.||.|||++
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~----------------------~~~~~~~~~~~~i~~qi~~~l~~lH~~  140 (303)
T 2vwi_A           83 VVKDELWLVMKLLSGGSVLDIIKHIVAKGEH----------------------KSGVLDESTIATILREVLEGLEYLHKN  140 (303)
T ss_dssp             ESSSCEEEEEECCTTCBHHHHHHHHHHTTTT----------------------TTCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eecCCcEEEehhccCCchHHHHHHHhhcccc----------------------ccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999988652100000                      000111223347889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++..........                                          
T Consensus       141 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~------------------------------------------  178 (303)
T 2vwi_A          141 GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDIT------------------------------------------  178 (303)
T ss_dssp             TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC------------------------------------------------
T ss_pred             CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCcc------------------------------------------
Confidence            99999999999999999999999999984432110000                                          


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     .........||+.|+|||++.+ ..++.++|||||||++|+|++|..||
T Consensus       179 -------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  227 (303)
T 2vwi_A          179 -------------------------------RNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY  227 (303)
T ss_dssp             ----------------------------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             -------------------------------chhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                                           0011234479999999999976 46899999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCch-hHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSK-EFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~-~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      .+.......................... ......++.+||.+||+.||.+||++.    |+++||||+...+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~----~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          228 HKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAA----ELLRHKFFQKAKNK  297 (303)
T ss_dssp             TTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHH----HHHTSTTC------
T ss_pred             ccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHH----HHhhChhhhcCCCC
Confidence            9887766665555433221111100000 001123589999999999999999998    99999999987654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=9.5e-49  Score=398.18  Aligned_cols=267  Identities=19%  Similarity=0.198  Sum_probs=189.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc--CCCCcccee------
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML--DHPFLPTLY------  155 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l--~HpnIv~l~------  155 (517)
                      .+|++++.||+|+||.||+|++..     +++.||||++.............+.+|+.+++.|  +||||++++      
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p  136 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVE-----RLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLP  136 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCC
T ss_pred             eeeeeeeeccCCCCEEEEEEEECC-----CCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEee
Confidence            459999999999999999999886     6789999999875433334455666786555555  699988755      


Q ss_pred             -eeeecC-----------------ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchh
Q 010140          156 -AEFEAS-----------------HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTL  217 (517)
Q Consensus       156 -~~~~~~-----------------~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (517)
                       +++...                 ..+|||||||+ |+|.+++..... .+.....                       .
T Consensus       137 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~-----------------------~  191 (371)
T 3q60_A          137 SDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGD-----------------------E  191 (371)
T ss_dssp             CEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHH-----------------------H
T ss_pred             ehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhh-----------------------h
Confidence             444332                 34899999997 899999976411 1111111                       0


Q ss_pred             hhhh-hHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCC
Q 010140          218 FFNY-RFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSC  296 (517)
Q Consensus       218 ~~~~-~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (517)
                      ...+ ..++.||+.||+|||++||+||||||+||||+.+|.+||+|||+++....                         
T Consensus       192 ~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-------------------------  246 (371)
T 3q60_A          192 GILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT-------------------------  246 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTSCEEECCGGGEEETTC-------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCCCEEEEecceeeecCC-------------------------
Confidence            0011 14559999999999999999999999999999999999999999843221                         


Q ss_pred             CCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCC
Q 010140          297 ATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGH  374 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~  374 (517)
                                                                              ......||+.|+|||++.+  ..+
T Consensus       247 --------------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~  270 (371)
T 3q60_A          247 --------------------------------------------------------RGPASSVPVTYAPREFLNASTATF  270 (371)
T ss_dssp             --------------------------------------------------------EEEGGGSCGGGCCHHHHTCSEEEC
T ss_pred             --------------------------------------------------------CccCccCCcCCcChhhccCCCCCc
Confidence                                                                    0012357799999999987  679


Q ss_pred             CccchHHHHHHHHHHHhhCCCCCCCCChHHH--HHH---Hh--cCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCccc
Q 010140          375 GSAVDWWTLGVFLYEMLYGTTPFKGENNEKT--LIN---IL--KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       375 ~~~~DiWSlGvil~elltG~~Pf~~~~~~~~--~~~---i~--~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  447 (517)
                      +.++|||||||++|||++|+.||.+......  +..   ..  .....++...       ..+..+.+||.+||+.||++
T Consensus       271 ~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~L~~dP~~  343 (371)
T 3q60_A          271 THALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCT-------PLPDFVKTLIGRFLNFDRRR  343 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSS-------CCCHHHHHHHHHHTCSSTTT
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhcc-------CCCHHHHHHHHHHcCCChhh
Confidence            9999999999999999999999987643211  000   00  0111111111       12235899999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCCCcccc
Q 010140          448 RIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      |||+.    |+++||||+++.|...
T Consensus       344 Rpt~~----e~l~hp~f~~~~~~~~  364 (371)
T 3q60_A          344 RLLPL----EAMETPEFLQLQNEIS  364 (371)
T ss_dssp             CCCHH----HHTTSHHHHHHHHHHH
T ss_pred             CCCHH----HHhcCHHHHHHHHHHh
Confidence            99998    9999999999888643

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4e-47  Score=378.54  Aligned_cols=284  Identities=20%  Similarity=0.235  Sum_probs=196.1

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|++++.||+|+||.||+|+++....  ....||||++...... ......+.+|+.+++.++||||++++++
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~   93 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDG--SFVKVAVKMLKADIIA-SSDIEEFLREAACMKEFDHPHVAKLVGV   93 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC---------CEEEEEEC-------CHHHHHHHHHHHHHTTCCCTTBCCCCEE
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCC--cceeEEEEEecccccC-HHHHHHHHHHHHHHHHCCCCceehhhce
Confidence            445677899999999999999999999876211  1237999999765332 2345677889999999999999999999


Q ss_pred             eecCcee------EEEEEecCCCchhHHHHhCCCCc--cCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          158 FEASHYS------CLVMEYCPGGDLYAARQRQPGKR--FGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       158 ~~~~~~~------~lV~E~~~gg~L~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      +......      |+||||+++|+|.+++.......  ..+.                          ...+..++.||+
T Consensus        94 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~--------------------------~~~~~~i~~qi~  147 (323)
T 3qup_A           94 SLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLP--------------------------LQTLVRFMVDIA  147 (323)
T ss_dssp             EECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCC--------------------------HHHHHHHHHHHH
T ss_pred             eeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccC--------------------------HHHHHHHHHHHH
Confidence            9876655      99999999999999986532111  1111                          122347889999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      .||+|||++||+||||||+|||++.++.+||+|||+++.......                                   
T Consensus       148 ~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~-----------------------------------  192 (323)
T 3qup_A          148 CGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDY-----------------------------------  192 (323)
T ss_dssp             HHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--------------------------------------------
T ss_pred             HHHHHHHcCCcccCCCCcceEEEcCCCCEEEeecccccccccccc-----------------------------------
Confidence            999999999999999999999999999999999999854321100                                   


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                                                               ........||+.|+|||++.+..++.++|||||||++|+
T Consensus       193 -----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  231 (323)
T 3qup_A          193 -----------------------------------------YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWE  231 (323)
T ss_dssp             -------------------------------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHH
Confidence                                                     001122357889999999999999999999999999999


Q ss_pred             Hhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC---ChHHhhcCCCcC
Q 010140          390 MLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK---GSVEIKRHEFFK  465 (517)
Q Consensus       390 llt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~---~~~ell~hp~f~  465 (517)
                      |++ |..||.+.+..+....+..........  .      .+.++.+||.+||+.||++||++.+   .++++++|||+.
T Consensus       232 ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~  303 (323)
T 3qup_A          232 IMTRGQTPYAGIENAEIYNYLIGGNRLKQPP--E------CMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVL  303 (323)
T ss_dssp             HHTTSCCTTTTCCGGGHHHHHHTTCCCCCCT--T------CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC----
T ss_pred             HHhCCCCCccccChHHHHHHHhcCCCCCCCC--c------cCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhc
Confidence            999 999999988888887777654322111  1      1225899999999999999999532   245899999999


Q ss_pred             CCCcccccC
Q 010140          466 GINWALIRS  474 (517)
Q Consensus       466 ~~~~~~~~~  474 (517)
                      +..++.+..
T Consensus       304 ~~~~~pl~~  312 (323)
T 3qup_A          304 STSQDPLYI  312 (323)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
Confidence            877765543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=6.7e-47  Score=374.77  Aligned_cols=260  Identities=22%  Similarity=0.274  Sum_probs=199.5

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcccee
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~  155 (517)
                      .....+..++|++.+.||+|+||.||+|++.       ++.||||++...... ......+.+|+.+|++++||||++++
T Consensus        29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~-------~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~  100 (309)
T 3p86_A           29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEWH-------GSDVAVKILMEQDFH-AERVNEFLREVAIMKRLRHPNIVLFM  100 (309)
T ss_dssp             ---CBCCGGGEEEEEEEEECSSEEEEEEEET-------TEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccCChhHceeeeEeecCCCeEEEEEEEC-------CCcEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            3445677789999999999999999999764       467999998654321 23345677899999999999999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      +++.+.+.+|+||||+++|+|.+++...... .++.                            ..+..++.||+.||+|
T Consensus       101 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~----------------------------~~~~~i~~qi~~aL~~  152 (309)
T 3p86_A          101 GAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDE----------------------------RRRLSMAYDVAKGMNY  152 (309)
T ss_dssp             EEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCH----------------------------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998764211 1222                            1224678999999999


Q ss_pred             HHhcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          235 LHMMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       235 LH~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      ||++|  |+||||||+|||++.++.+||+|||+++.....                                        
T Consensus       153 LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~----------------------------------------  192 (309)
T 3p86_A          153 LHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST----------------------------------------  192 (309)
T ss_dssp             HHTSSSCCCCTTCCGGGEEECTTCCEEECCCC------------------------------------------------
T ss_pred             HHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccc----------------------------------------
Confidence            99999  999999999999999999999999998432110                                        


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                            ........||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       193 --------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt  234 (309)
T 3p86_A          193 --------------------------------------FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT  234 (309)
T ss_dssp             -----------------------------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence                                                  001223469999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |..||.+.+..+....+........... .      ...++.+||.+||+.||.+||++.    ++++
T Consensus       235 g~~Pf~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~~l~~dP~~Rps~~----~ll~  291 (309)
T 3p86_A          235 LQQPWGNLNPAQVVAAVGFKCKRLEIPR-N------LNPQVAAIIEGCWTNEPWKRPSFA----TIMD  291 (309)
T ss_dssp             CCCTTTTSCHHHHHHHHHHSCCCCCCCT-T------SCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCCCCCCHHHHHHHHHhcCCCCCCCc-c------CCHHHHHHHHHHccCChhhCcCHH----HHHH
Confidence            9999999888777776643322221111 1      122589999999999999999997    6665

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=6.5e-47  Score=381.49  Aligned_cols=272  Identities=25%  Similarity=0.350  Sum_probs=211.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC------cc
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF------LP  152 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv  152 (517)
                      +....++|++++.||+|+||.||+|++...    .++.||+|++....    .....+.+|+.+++.++|++      |+
T Consensus        14 g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~~~   85 (355)
T 2eu9_A           14 GDWLQERYEIVGNLGEGTFGKVVECLDHAR----GKSQVALKIIRNVG----KYREAARLEINVLKKIKEKDKENKFLCV   85 (355)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETTT----TTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHHCTTSCSCBC
T ss_pred             CceecccEEEEEEeeccCCeEEEEEEecCC----CceEEEEEEEcccc----cchhHHHHHHHHHHHHhhcCCCCceeEE
Confidence            334568999999999999999999998752    33789999997643    22345666999999987665      99


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      .+++++...+.+|+||||+ +++|.+++.......++....                            +.++.||+.||
T Consensus        86 ~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~~L  136 (355)
T 2eu9_A           86 LMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHV----------------------------RHMAYQLCHAL  136 (355)
T ss_dssp             CEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHH----------------------------HHHHHHHHHHH
T ss_pred             EeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHH
Confidence            9999999999999999999 778888777654333443332                            36789999999


Q ss_pred             HHHHhcCceeccCCCCceEE-------------------ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCC
Q 010140          233 EYLHMMGIVYRDLKPENVLV-------------------REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSI  293 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl-------------------~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (517)
                      +|||++||+||||||+|||+                   +.++.+||+|||+++...                       
T Consensus       137 ~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~-----------------------  193 (355)
T 2eu9_A          137 RFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDH-----------------------  193 (355)
T ss_dssp             HHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETT-----------------------
T ss_pred             HHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccc-----------------------
Confidence            99999999999999999999                   567899999999984311                       


Q ss_pred             CCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC
Q 010140          294 PSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG  373 (517)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~  373 (517)
                                                                                ......+||+.|+|||++.+..
T Consensus       194 ----------------------------------------------------------~~~~~~~gt~~y~aPE~~~~~~  215 (355)
T 2eu9_A          194 ----------------------------------------------------------EHHTTIVATRHYRPPEVILELG  215 (355)
T ss_dssp             ----------------------------------------------------------SCCCSSCSCGGGCCHHHHTTCC
T ss_pred             ----------------------------------------------------------ccccCCcCCCcccCCeeeecCC
Confidence                                                                      0112347999999999999999


Q ss_pred             CCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCC----------------CC---------------
Q 010140          374 HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIG----------------VS---------------  422 (517)
Q Consensus       374 ~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~----------------~~---------------  422 (517)
                      ++.++|||||||++|||++|..||.+....+.+..+.......|...                ..               
T Consensus       216 ~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T 2eu9_A          216 WAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKP  295 (355)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCC
T ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCc
Confidence            99999999999999999999999998877665544433211111100                00               


Q ss_pred             ----CchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          423 ----SSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       423 ----~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                          .........++.+||.+||+.||++|||+.    |+++||||++++|+..
T Consensus       296 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~----e~l~hp~f~~~~~~~~  345 (355)
T 2eu9_A          296 LKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLA----EALLHPFFAGLTPEER  345 (355)
T ss_dssp             GGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH----HHTTSGGGGGCCHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHhcCChhhCcCHH----HHhcChhhcCCChhhc
Confidence                000011234688999999999999999998    9999999999998744

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.5e-47  Score=388.11  Aligned_cols=261  Identities=28%  Similarity=0.401  Sum_probs=201.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC--CCCccceeeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD--HPFLPTLYAEFE  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~  159 (517)
                      ..++|++++.||+|+||.||+|.+.      .++.||||++...... ......+.+|+.+|+.+.  ||||+++++++.
T Consensus        54 ~~~~y~~~~~LG~G~fg~Vy~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~  126 (390)
T 2zmd_A           54 KGRIYSILKQIGSGGSSKVFQVLNE------KKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI  126 (390)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECT------TCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             cCCceEEEEEEccCCCeEEEEEEcC------CCCEEEEEEEeccccc-HHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe
Confidence            3456999999999999999999865      3578999998654221 234566778999999996  599999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      ..+.+||||| +.+++|.+++....  .+....                            .+.++.||+.||+|||++|
T Consensus       127 ~~~~~~lv~E-~~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~aL~~lH~~~  175 (390)
T 2zmd_A          127 TDQYIYMVME-CGNIDLNSWLKKKK--SIDPWE----------------------------RKSYWKNMLEAVHTIHQHG  175 (390)
T ss_dssp             CSSEEEEEEE-CCSEEHHHHHHHCS--SCCHHH----------------------------HHHHHHHHHHHHHHHHTTT
T ss_pred             cCCEEEEEEe-cCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCC
Confidence            9999999999 55889999987642  222222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++ ++.+||+|||+++.+.....                                             
T Consensus       176 ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~---------------------------------------------  209 (390)
T 2zmd_A          176 IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT---------------------------------------------  209 (390)
T ss_dssp             CCCCCCCGGGEEES-SSCEEECCCSSSCCC--------------------------------------------------
T ss_pred             eeecCCCHHHEEEE-CCeEEEEecCccccccCCCc---------------------------------------------
Confidence            99999999999995 68999999999854321000                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----------CCCCccchHHHHHHHHH
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----------QGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----------~~~~~~~DiWSlGvil~  388 (517)
                                                     .......+||+.|+|||++.+           ..++.++|||||||++|
T Consensus       210 -------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~  258 (390)
T 2zmd_A          210 -------------------------------SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILY  258 (390)
T ss_dssp             -----------------------------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHH
T ss_pred             -------------------------------cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHH
Confidence                                           001234579999999999976           35889999999999999


Q ss_pred             HHhhCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          389 EMLYGTTPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       389 elltG~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||++|..||.+... ...+..+.......+..... .      .++.+||.+||+.||.+||++.    |+++||||+..
T Consensus       259 ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~li~~~L~~dP~~Rps~~----ell~hp~~~~~  327 (390)
T 2zmd_A          259 YMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIP-E------KDLQDVLKCCLKRDPKQRISIP----ELLAHPYVQIQ  327 (390)
T ss_dssp             HHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCS-C------HHHHHHHHHHTCSSTTTSCCHH----HHHTSHHHHSC
T ss_pred             HHHHCCCcchhhhHHHHHHHHHhCccccCCCCccc-h------HHHHHHHHHHcccChhhCCCHH----HHhhCcCcccc
Confidence            99999999987644 34555666544332221111 1      2489999999999999999998    99999999854


Q ss_pred             C
Q 010140          468 N  468 (517)
Q Consensus       468 ~  468 (517)
                      .
T Consensus       328 ~  328 (390)
T 2zmd_A          328 T  328 (390)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.4e-47  Score=381.77  Aligned_cols=263  Identities=33%  Similarity=0.485  Sum_probs=201.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-----HHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-----IRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++......     .......+.+|+.+|+.++||||+++++++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   84 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERK-----TCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF   84 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hceeEeeEEecCCCEEEEEEEEcC-----CCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEE
Confidence            579999999999999999999886     6789999999765321     122344577899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..+. .|+||||+++|+|.+++...  ..+....                            ++.++.||+.||+|||++
T Consensus        85 ~~~~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~  133 (322)
T 2ycf_A           85 DAED-YYIVLELMEGGELFDKVVGN--KRLKEAT----------------------------CKLYFYQMLLAVQYLHEN  133 (322)
T ss_dssp             ESSS-EEEEEECCTTEETHHHHSTT--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             cCCc-eEEEEecCCCCcHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            7665 89999999999999887643  2232222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCc---EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGH---IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~---vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      ||+||||||+|||++.++.   +||+|||+++.....                                           
T Consensus       134 ~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------  170 (322)
T 2ycf_A          134 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET-------------------------------------------  170 (322)
T ss_dssp             TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCC-------------------------------------------
T ss_pred             CeeccCCCHHHEEEecCCCCCeEEEccCccceecccc-------------------------------------------
Confidence            9999999999999987664   999999998443210                                           


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhh
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                          .......||+.|+|||++.   +..++.++|||||||++|+|++
T Consensus       171 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~  214 (322)
T 2ycf_A          171 ------------------------------------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS  214 (322)
T ss_dssp             ------------------------------------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHh
Confidence                                                0012236899999999974   4568999999999999999999


Q ss_pred             CCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          393 GTTPFKGENNE-KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       393 G~~Pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      |..||...... .....+......+.....     ......+.+||.+||..||++||++.    |+++||||++.+|.
T Consensus       215 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~~l~~dP~~Rps~~----~~l~h~~~~~~~~~  284 (322)
T 2ycf_A          215 GYPPFSEHRTQVSLKDQITSGKYNFIPEVW-----AEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWLQDEDMK  284 (322)
T ss_dssp             SSCSSCSTTCSSCHHHHHHHTCCCCCHHHH-----TTSCHHHHHHHHHHSCSSTTTSCCHH----HHHTSGGGCCHHHH
T ss_pred             CCCCCcccchHHHHHHHHHhCccccCchhh-----hhcCHHHHHHHHHHcccCHhhCCCHH----HHhhCcCcCCHHHH
Confidence            99999875543 333344444333221100     11233589999999999999999998    99999999988775

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=9.1e-47  Score=383.55  Aligned_cols=263  Identities=28%  Similarity=0.366  Sum_probs=205.3

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|.+.+.||+|+||.||+|+++.     +++.||||++...... .....++.+|+.+++.++||||+++++++...+.
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  115 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKR-----SGEKVAIKKLSRPFQS-EIFAKRAYRELLLLKHMQHENVIGLLDVFTPASS  115 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             ccEEEEeEEecCCCeEEEEEEECC-----CCCEEEEEEecccccc-hhHHHHHHHHHHHHHhcCCCCchhhhhheeccCC
Confidence            689999999999999999999886     6889999999754211 2334567789999999999999999999987765


Q ss_pred             e------EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          164 S------CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       164 ~------~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      .      |+||||+. ++|.+++..    .++...                            ++.++.||+.||+|||+
T Consensus       116 ~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~----------------------------~~~i~~qi~~aL~~LH~  162 (371)
T 4exu_A          116 LRNFYDFYLVMPFMQ-TDLQKIMGM----EFSEEK----------------------------IQYLVYQMLKGLKYIHS  162 (371)
T ss_dssp             STTCCCCEEEEECCC-EEHHHHTTS----CCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             cccceeEEEEEcccc-ccHHHHhhc----CCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            4      99999995 688776632    232222                            24678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++...                                               
T Consensus       163 ~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~-----------------------------------------------  195 (371)
T 4exu_A          163 AGVVHRDLKPGNLAVNEDCELKILDFGLARHAD-----------------------------------------------  195 (371)
T ss_dssp             TTCCCSCCCGGGEEECTTCCEEECSTTCC---------------------------------------------------
T ss_pred             CCCcCCCcCHHHeEECCCCCEEEEecCcccccc-----------------------------------------------
Confidence            999999999999999999999999999984321                                               


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ......+||+.|+|||++.+ ..++.++|||||||++|+|++|..|
T Consensus       196 ----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~p  241 (371)
T 4exu_A          196 ----------------------------------AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTL  241 (371)
T ss_dssp             --------------------------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------cCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCC
Confidence                                              01223468999999999987 5689999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCC--------------------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          397 FKGENNEKTLINILKKPLTFP--------------------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p--------------------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      |.+.+..+.+..+.......+                    .........  ......+.+||.+||+.||++|||+.  
T Consensus       242 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~--  319 (371)
T 4exu_A          242 FKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAA--  319 (371)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHH--
T ss_pred             CCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHH--
Confidence            999887777766643111100                    000000000  01234689999999999999999998  


Q ss_pred             hHHhhcCCCcCCCCcc
Q 010140          455 SVEIKRHEFFKGINWA  470 (517)
Q Consensus       455 ~~ell~hp~f~~~~~~  470 (517)
                        |+++||||+.....
T Consensus       320 --ell~hp~f~~~~~~  333 (371)
T 4exu_A          320 --QALTHPFFEPFRDP  333 (371)
T ss_dssp             --HHHTSGGGTTTCCG
T ss_pred             --HHhcCcccccCCCc
Confidence              99999999987654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-47  Score=377.00  Aligned_cols=261  Identities=24%  Similarity=0.374  Sum_probs=202.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|+++.     +++.||||++......  .....+.+|+.+|+.++||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   78 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATANVFRGRHKK-----TGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLNHKNIVKLFAIEEE   78 (319)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECGGGGG--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEEECC-----CCcEEEEEEecccccc--chHHHHHHHHHHHHhcCCCCcceEEEEeec
Confidence            345789999999999999999999986     6789999999754321  224556679999999999999999999976


Q ss_pred             Cc--eeEEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          161 SH--YSCLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       161 ~~--~~~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      ..  ..|+||||++||+|.+++...... .++..                            .++.++.||+.||+|||+
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~----------------------------~~~~i~~qi~~~L~~LH~  130 (319)
T 4euu_A           79 TTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPES----------------------------EFLIVLRDVVGGMNHLRE  130 (319)
T ss_dssp             TTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCCCCCCHHHHHHHhccccCCCHH----------------------------HHHHHHHHHHHHHHHHHH
Confidence            55  789999999999999998764211 12222                            234788999999999999


Q ss_pred             cCceeccCCCCceEE----ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          238 MGIVYRDLKPENVLV----REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       238 ~~iiHrDLKp~NILl----~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      +||+||||||+|||+    +.++.+||+|||+++.....                                         
T Consensus       131 ~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~-----------------------------------------  169 (319)
T 4euu_A          131 NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-----------------------------------------  169 (319)
T ss_dssp             TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTT-----------------------------------------
T ss_pred             CCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCC-----------------------------------------
Confidence            999999999999999    77888999999998543210                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc--------CCCCCccchHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS--------GQGHGSAVDWWTLGV  385 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~--------~~~~~~~~DiWSlGv  385 (517)
                                                            .......||+.|+|||++.        +..++.++|||||||
T Consensus       170 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~  211 (319)
T 4euu_A          170 --------------------------------------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGV  211 (319)
T ss_dssp             --------------------------------------CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHH
T ss_pred             --------------------------------------CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHH
Confidence                                                  1112346999999999986        467899999999999


Q ss_pred             HHHHHhhCCCCCCCCC----hHHHHHHHhcCCCC-------------------CCCCCCCCchhHHhhhhHHHHHHHhcc
Q 010140          386 FLYEMLYGTTPFKGEN----NEKTLINILKKPLT-------------------FPRIGVSSSKEFEEVVKLQDLISKLLV  442 (517)
Q Consensus       386 il~elltG~~Pf~~~~----~~~~~~~i~~~~~~-------------------~p~~~~~~~~~~~~~~~l~dLi~~~L~  442 (517)
                      ++|||++|..||....    ..+.+.++..+...                   ++... ..  .......+.+||.+||+
T Consensus       212 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~ll~~~L~  288 (319)
T 4euu_A          212 TFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC-SL--SRGLQVLLTPVLANILE  288 (319)
T ss_dssp             HHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTC-SS--CHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCccc-cc--chhHHHHhHHHHHHhcc
Confidence            9999999999997433    34555555543321                   11100 00  11234468999999999


Q ss_pred             CCcccccCCCCChHHhhcCC
Q 010140          443 KNPKKRIGSLKGSVEIKRHE  462 (517)
Q Consensus       443 ~dP~~R~t~~~~~~ell~hp  462 (517)
                      .||++|||+.    |+++||
T Consensus       289 ~dP~~R~s~~----ell~h~  304 (319)
T 4euu_A          289 ADQEKCWGFD----QFFAET  304 (319)
T ss_dssp             CCTTTSCCHH----HHHHHH
T ss_pred             CChhhhccHH----Hhhhcc
Confidence            9999999998    999986

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.1e-46  Score=380.17  Aligned_cols=280  Identities=24%  Similarity=0.278  Sum_probs=208.6

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|++..     +++.||||++.....  .....++.+|+.+++.++||||+++++++...
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   81 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKP-----TGEIVAIKKIEPFDK--PLFALRTLREIKILKHFKHENIITIFNIQRPD   81 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECCCSS--HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCS
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECC-----CCcEEEEEeeccccc--chHHHHHHHHHHHHHhCcCCCcCCeeeeeccc
Confidence            35789999999999999999999876     678999999864321  23344566799999999999999999988654


Q ss_pred             -----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          162 -----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       162 -----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                           ...|+||||+. |+|.+++...   .++...                            ++.++.||+.||+|||
T Consensus        82 ~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~----------------------------~~~~~~qi~~~L~~LH  129 (353)
T 2b9h_A           82 SFENFNEVYIIQELMQ-TDLHRVISTQ---MLSDDH----------------------------IQYFIYQTLRAVKVLH  129 (353)
T ss_dssp             CSTTCCCEEEEECCCS-EEHHHHHHHC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             ccCccceEEEEEeccC-ccHHHHHhhc---CCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                 67899999995 6999888652   232222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++...........                                      
T Consensus       130 ~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~--------------------------------------  171 (353)
T 2b9h_A          130 GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSE--------------------------------------  171 (353)
T ss_dssp             HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------------------------------------
T ss_pred             HCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccC--------------------------------------
Confidence            999999999999999999999999999998654321110000                                      


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                    ...........+||+.|+|||++.+ ..++.++|||||||++|+|++|..
T Consensus       172 ------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  221 (353)
T 2b9h_A          172 ------------------------------PTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRP  221 (353)
T ss_dssp             --------------------------------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------ccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCC
Confidence                                          0000111234579999999999865 568999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcC---CCCC------------------CCCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKK---PLTF------------------PRIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~---~~~~------------------p~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||.+.+..+.+..+...   ....                  +.........  .....++.+||.+||+.||++|||+.
T Consensus       222 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  301 (353)
T 2b9h_A          222 IFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAK  301 (353)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHH
Confidence            99998876665554321   1100                  0000000000  02234689999999999999999998


Q ss_pred             CChHHhhcCCCcCCCCcccc
Q 010140          453 KGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       453 ~~~~ell~hp~f~~~~~~~~  472 (517)
                          |+++||||+...+...
T Consensus       302 ----ell~hp~~~~~~~~~~  317 (353)
T 2b9h_A          302 ----EALEHPYLQTYHDPND  317 (353)
T ss_dssp             ----HHHTSGGGTTTCCTTS
T ss_pred             ----HHhcCccccccCCccc
Confidence                9999999999887544

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.8e-47  Score=385.45  Aligned_cols=271  Identities=27%  Similarity=0.393  Sum_probs=192.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++.+.||+|+||.||+|+++.     +++.||||++....    ....+...|+..+..++||||++++++|...+
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~   92 (360)
T 3e3p_A           22 MDRFQVERMAGQGTFGTVQLGKEKS-----TGMSVAIKKVIQDP----RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLG   92 (360)
T ss_dssp             HTTEEEC----------CEEEEETT-----TCCEEEEEEEECCT----TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEEecCc----cccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence            4789999999999999999999886     67899999886542    22344556788888899999999999996533


Q ss_pred             -------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          163 -------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       163 -------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                             .+|+||||+++ +|...+...........                          ...++.++.||+.||.||
T Consensus        93 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~--------------------------~~~~~~~~~qi~~al~~l  145 (360)
T 3e3p_A           93 ERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPP--------------------------PILIKVFLFQLIRSIGCL  145 (360)
T ss_dssp             SSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCC--------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeEEEEeecccc-cHHHHHHHHhhcccCCC--------------------------HHHHHHHHHHHHHHHHHH
Confidence                   38999999965 65554433111111111                          112346789999999999


Q ss_pred             H--hcCceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          236 H--MMGIVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       236 H--~~~iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      |  ++||+||||||+|||++. ++.+||+|||+++.....                                        
T Consensus       146 H~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~----------------------------------------  185 (360)
T 3e3p_A          146 HLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPS----------------------------------------  185 (360)
T ss_dssp             TSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTT----------------------------------------
T ss_pred             hCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCC----------------------------------------
Confidence            9  999999999999999996 899999999998543210                                        


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~ell  391 (517)
                                                             .......||+.|+|||++.+.. ++.++|||||||++|+|+
T Consensus       186 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell  226 (360)
T 3e3p_A          186 ---------------------------------------EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMM  226 (360)
T ss_dssp             ---------------------------------------SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                   0112346899999999997765 899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcCCCCCC-----------------CCC-CCCchh-----HHhhhhHHHHHHHhccCCcccc
Q 010140          392 YGTTPFKGENNEKTLINILKKPLTFP-----------------RIG-VSSSKE-----FEEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~~~~~p-----------------~~~-~~~~~~-----~~~~~~l~dLi~~~L~~dP~~R  448 (517)
                      +|+.||.+.+....+..+.......+                 ... ......     .....++.+||.+||+.||.+|
T Consensus       227 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  306 (360)
T 3e3p_A          227 LGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEER  306 (360)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGS
T ss_pred             hCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCcccc
Confidence            99999999888777766654211100                 000 000000     0123468999999999999999


Q ss_pred             cCCCCChHHhhcCCCcCCCCcccc
Q 010140          449 IGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       449 ~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ||+.    |+++||||+++.+...
T Consensus       307 pt~~----e~l~hp~f~~~~~~~~  326 (360)
T 3e3p_A          307 MKPY----EALCHPYFDELHDPAT  326 (360)
T ss_dssp             CCHH----HHTTSGGGGGGGCTTC
T ss_pred             CCHH----HHhcCccccccCCccc
Confidence            9998    9999999998765443

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=5e-47  Score=383.43  Aligned_cols=294  Identities=18%  Similarity=0.207  Sum_probs=211.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|++++.||+|+||.||+|++.+.....+++.||||++.....  ......+.+|+.+|.++ +||||++++++
T Consensus        17 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpniv~~~~~   94 (359)
T 3vhe_A           17 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGA   94 (359)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC--HHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence            4567789999999999999999999976543344778999999976422  23345677899999999 89999999999


Q ss_pred             eecCc-eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhh---------------------------------
Q 010140          158 FEASH-YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF---------------------------------  203 (517)
Q Consensus       158 ~~~~~-~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~---------------------------------  203 (517)
                      +...+ .+|+|||||+||+|.+++........+.......+......                                 
T Consensus        95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (359)
T 3vhe_A           95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS  174 (359)
T ss_dssp             ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred             eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence            87754 58999999999999999987643222111110000000000                                 


Q ss_pred             ---hhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcc
Q 010140          204 ---FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKL  280 (517)
Q Consensus       204 ---~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~  280 (517)
                         .................+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......      
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~------  248 (359)
T 3vhe_A          175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD------  248 (359)
T ss_dssp             ---------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT------
T ss_pred             hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc------
Confidence               00000000011134455678999999999999999999999999999999999999999999854321100      


Q ss_pred             hHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCC
Q 010140          281 SFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGT  360 (517)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt  360 (517)
                                                                                            ........||
T Consensus       249 ----------------------------------------------------------------------~~~~~~~~~t  258 (359)
T 3vhe_A          249 ----------------------------------------------------------------------YVRKGDARLP  258 (359)
T ss_dssp             ----------------------------------------------------------------------CEEC--CEEC
T ss_pred             ----------------------------------------------------------------------chhccccCCC
Confidence                                                                                  0112234689


Q ss_pred             CCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHH
Q 010140          361 HEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISK  439 (517)
Q Consensus       361 ~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~  439 (517)
                      +.|+|||++.+..++.++|||||||++|||++ |..||.+....+.+..........+... ..      ..++.+||.+
T Consensus       259 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~li~~  331 (359)
T 3vhe_A          259 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD-YT------TPEMYQTMLD  331 (359)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCT-TC------CHHHHHHHHH
T ss_pred             ceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCC-CC------CHHHHHHHHH
Confidence            99999999999899999999999999999998 9999998775554444443322221111 11      1248999999


Q ss_pred             hccCCcccccCCCCChHHhhcC
Q 010140          440 LLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       440 ~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||+.||.+||++.    |+++|
T Consensus       332 ~l~~dP~~Rps~~----ell~~  349 (359)
T 3vhe_A          332 CWHGEPSQRPTFS----ELVEH  349 (359)
T ss_dssp             HTCSSGGGSCCHH----HHHHH
T ss_pred             HccCChhhCCCHH----HHHHH
Confidence            9999999999997    77765

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=8.3e-49  Score=399.47  Aligned_cols=258  Identities=13%  Similarity=0.137  Sum_probs=193.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHH---HHHhcCCCCcccee----
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV---ILTMLDHPFLPTLY----  155 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~---il~~l~HpnIv~l~----  155 (517)
                      .++|++.+.||+|+||.||+|+++.     +++.||||++...........+.+.+|+.   +|+.++|||||+++    
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~  146 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQE-----TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI  146 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-C-----CCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBC
T ss_pred             CceEEEcceeecCCCEEEEEEEECC-----CCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhh
Confidence            5789999999999999999999876     67899999987432222234566777994   55555899999998    


Q ss_pred             ---eeeecCc-----------------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccc
Q 010140          156 ---AEFEASH-----------------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDV  215 (517)
Q Consensus       156 ---~~~~~~~-----------------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  215 (517)
                         +++++.+                 ..||||||+ +|+|.+++....  .+.....                     .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~--~~~~~~~---------------------~  202 (377)
T 3byv_A          147 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLL--SHSSTHK---------------------S  202 (377)
T ss_dssp             CCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHH--HTTTTTH---------------------H
T ss_pred             hhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcc--ccccccc---------------------c
Confidence               6666553                 389999999 789999987641  1221000                     0


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCC
Q 010140          216 TLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS  295 (517)
Q Consensus       216 ~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (517)
                      .....+..|+.||+.||+|||++||+||||||+||||+.+|.+||+|||+++...                         
T Consensus       203 l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~-------------------------  257 (377)
T 3byv_A          203 LVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG-------------------------  257 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETT-------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhheecC-------------------------
Confidence            1112224688999999999999999999999999999999999999999984211                         


Q ss_pred             CCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---
Q 010140          296 CATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---  372 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---  372 (517)
                                                                              ......+| +.|+|||++.+.   
T Consensus       258 --------------------------------------------------------~~~~~~~g-~~y~aPE~~~~~~~~  280 (377)
T 3byv_A          258 --------------------------------------------------------ARVVSSVS-RGFEPPELEARRATI  280 (377)
T ss_dssp             --------------------------------------------------------CEEECCCC-TTCCCHHHHHHHTST
T ss_pred             --------------------------------------------------------CcccCCCC-cCccChhhhcccccc
Confidence                                                                    01123468 999999999987   


Q ss_pred             --------CCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCC
Q 010140          373 --------GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       373 --------~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~d  444 (517)
                              .++.++|||||||++|||++|+.||.+.........+.....       .      .+.++.+||.+||+.|
T Consensus       281 ~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~-------~------~~~~~~~li~~~L~~d  347 (377)
T 3byv_A          281 SYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRSCK-------N------IPQPVRALLEGFLRYP  347 (377)
T ss_dssp             HHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGGSSCC-------C------CCHHHHHHHHHHTCSS
T ss_pred             cccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhhhhcc-------C------CCHHHHHHHHHHcCCC
Confidence                    799999999999999999999999987654443333332211       1      1125899999999999


Q ss_pred             cccccCCCCChHHhhcCCCcCCCC
Q 010140          445 PKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       445 P~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |++||++.    |+++||||+++.
T Consensus       348 p~~Rpt~~----e~l~hp~f~~~~  367 (377)
T 3byv_A          348 KEDRLLPL----QAMETPEYEQLR  367 (377)
T ss_dssp             GGGCCCHH----HHHTSHHHHHHH
T ss_pred             chhCCCHH----HHhhChHHHHHH
Confidence            99999998    999999998653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.1e-46  Score=373.95  Aligned_cols=259  Identities=23%  Similarity=0.268  Sum_probs=205.2

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ..++..++|++.+.||+|+||.||+|+++....  .+..||||++.....  ......+.+|+.+|+.++||||++++++
T Consensus        43 ~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~--~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~  118 (325)
T 3kul_A           43 TREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQ--RDVPVAIKALKAGYT--ERQRRDFLSEASIMGQFDHPNIIRLEGV  118 (325)
T ss_dssp             CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTS--CCEEEEEEEECTTCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccChhHeEEeeEEEeCCCcEEEEEEEecCCC--CCceEEEEecCCCCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            345677899999999999999999999875322  345699999975421  2334567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+++..|+||||++||+|.+++.... ..++...                            +..++.||+.||+|||+
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~~L~~LH~  169 (325)
T 3kul_A          119 VTRGRLAMIVTEYMENGSLDTFLRTHD-GQFTIMQ----------------------------LVGMLRGVGAGMRYLSD  169 (325)
T ss_dssp             ECGGGCCEEEEECCTTCBHHHHHHTTT-TCSCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EEeCCccEEEeeCCCCCcHHHHHHhcc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986542 2233222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++........                                          
T Consensus       170 ~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~------------------------------------------  207 (325)
T 3kul_A          170 LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA------------------------------------------  207 (325)
T ss_dssp             TTEECSCCSGGGEEECTTCCEEECCCSSCEECC----C------------------------------------------
T ss_pred             CCeeCCCCCcceEEECCCCCEEECCCCcccccccCccc------------------------------------------
Confidence            99999999999999999999999999998544321100                                          


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       208 ---------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p  254 (325)
T 3kul_A          208 ---------------------------------AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERP  254 (325)
T ss_dssp             ---------------------------------CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ---------------------------------eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence                                             001122347889999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+....+....+..........  .      .+..+.+||.+||..||.+||++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~l~~li~~~l~~dp~~Rps~~  302 (325)
T 3kul_A          255 YWNMTNRDVISSVEEGYRLPAPM--G------CPHALHQLMLDCWHKDRAQRPRFS  302 (325)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCT--T------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cccCCHHHHHHHHHcCCCCCCCC--C------cCHHHHHHHHHHccCChhhCcCHH
Confidence            99998888887777653221111  1      122589999999999999999997

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1e-46  Score=368.57  Aligned_cols=253  Identities=21%  Similarity=0.333  Sum_probs=196.5

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++...... ......+.+|+.++..+ +||||+++++++.+.+
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~   84 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRL-----DGCIYAIKRSKKPLAG-SVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD   84 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCCTT-SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT
T ss_pred             chhhhhhhhcCCCceEEEEEEEcC-----CCceEEEEEecccccc-cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC
Confidence            579999999999999999999886     6789999998743211 12234566789999998 9999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ..|+||||++||+|.+++.....  ..++.                            ..++.++.||+.||+|||++||
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~----------------------------~~~~~i~~qi~~al~~lH~~~i  136 (289)
T 1x8b_A           85 HMLIQNEYCNGGSLADAISENYRIMSYFKE----------------------------AELKDLLLQVGRGLRYIHSMSL  136 (289)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHHHTCCCCH----------------------------HHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEEEecCCCcHHHHHHhhcccccCCCH----------------------------HHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999999999876421  11222                            2234788999999999999999


Q ss_pred             eeccCCCCceEEccC-------------------CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          241 VYRDLKPENVLVRED-------------------GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       241 iHrDLKp~NILl~~~-------------------~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      +||||||+|||++.+                   +.+||+|||++.....                              
T Consensus       137 vH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~------------------------------  186 (289)
T 1x8b_A          137 VHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS------------------------------  186 (289)
T ss_dssp             ECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTC------------------------------
T ss_pred             eecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCC------------------------------
Confidence            999999999999844                   4799999999843221                              


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchH
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDW  380 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~Di  380 (517)
                                                                          .....||+.|+|||++.+. .++.++||
T Consensus       187 ----------------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~~Di  214 (289)
T 1x8b_A          187 ----------------------------------------------------PQVEEGDSRFLANEVLQENYTHLPKADI  214 (289)
T ss_dssp             ----------------------------------------------------SCCCCCCGGGCCHHHHTTCCTTHHHHHH
T ss_pred             ----------------------------------------------------ccccCCCccccChhHhcCCCCCCchhhH
Confidence                                                                1123589999999999876 46789999


Q ss_pred             HHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          381 WTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       381 WSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |||||++|+|++|.+|+....   ....+......  ......+      .++.+||.+||+.||++||++.    |+++
T Consensus       215 ~slG~il~~l~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~------~~~~~li~~~l~~dp~~Rps~~----~ll~  279 (289)
T 1x8b_A          215 FALALTVVCAAGAEPLPRNGD---QWHEIRQGRLP--RIPQVLS------QEFTELLKVMIHPDPERRPSAM----ALVK  279 (289)
T ss_dssp             HHHHHHHHHHTTCCCCCSSSH---HHHHHHTTCCC--CCSSCCC------HHHHHHHHHHTCSSGGGSCCHH----HHHT
T ss_pred             HHHHHHHHHHhcCCCCCcchh---HHHHHHcCCCC--CCCcccC------HHHHHHHHHHhCCCcccCCCHH----HHhh
Confidence            999999999999998876543   23344443322  1111112      2489999999999999999998    9999


Q ss_pred             CCCcCCC
Q 010140          461 HEFFKGI  467 (517)
Q Consensus       461 hp~f~~~  467 (517)
                      ||||++.
T Consensus       280 h~~~~~~  286 (289)
T 1x8b_A          280 HSVLLSA  286 (289)
T ss_dssp             CTTC---
T ss_pred             ChHhhhh
Confidence            9999864

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.8e-46  Score=370.35  Aligned_cols=255  Identities=27%  Similarity=0.421  Sum_probs=209.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|++++.||+|+||.||+|++..     +++.||||++.....  ......+.+|+.+++.++||||+++++++.+...
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNR-----TQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK   94 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEETTTC--STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECC-----CCcEEEEEEeccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe
Confidence            579999999999999999999876     678999999865421  1334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||++|++|.+++...   .++...                            +..++.||+.||.|||++||+||
T Consensus        95 ~~lv~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~i~H~  143 (303)
T 3a7i_A           95 LWIIMEYLGGGSALDLLEPG---PLDETQ----------------------------IATILREILKGLDYLHSEKKIHR  143 (303)
T ss_dssp             EEEEEECCTTEEHHHHHTTS---CCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEECC
T ss_pred             EEEEEEeCCCCcHHHHHhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHCCCccC
Confidence            99999999999999988642   232222                            23678999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.++.+||+|||++......                                                   
T Consensus       144 dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~---------------------------------------------------  172 (303)
T 3a7i_A          144 DIKAANVLLSEHGEVKLADFGVAGQLTDT---------------------------------------------------  172 (303)
T ss_dssp             CCSGGGEEECTTSCEEECCCTTCEECBTT---------------------------------------------------
T ss_pred             CCChheEEECCCCCEEEeecccceecCcc---------------------------------------------------
Confidence            99999999999999999999998443210                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCChH
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNE  403 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~  403 (517)
                                                 ........||+.|+|||++.+..++.++|||||||++|+|++|..||......
T Consensus       173 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  225 (303)
T 3a7i_A          173 ---------------------------QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM  225 (303)
T ss_dssp             ---------------------------BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             ---------------------------ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH
Confidence                                       00123346999999999999988999999999999999999999999988877


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          404 KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       404 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .....+.......  ......      ..+.+||.+||+.||.+||++.    |+++||||..
T Consensus       226 ~~~~~~~~~~~~~--~~~~~~------~~l~~li~~~l~~dp~~Rps~~----~ll~~~~~~~  276 (303)
T 3a7i_A          226 KVLFLIPKNNPPT--LEGNYS------KPLKEFVEACLNKEPSFRPTAK----ELLKHKFILR  276 (303)
T ss_dssp             HHHHHHHHSCCCC--CCSSCC------HHHHHHHHHHCCSSGGGSCCHH----HHTTCHHHHH
T ss_pred             HHHHHhhcCCCCC--CccccC------HHHHHHHHHHcCCChhhCcCHH----HHhhChhhhc
Confidence            7766665543221  111112      2489999999999999999998    9999999964

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.5e-47  Score=377.31  Aligned_cols=284  Identities=20%  Similarity=0.230  Sum_probs=216.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +++..++|++.+.||+|+||.||+|+++......+++.||||++......  .....+.+|+.+++.++||||+++++++
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~   97 (322)
T 1p4o_A           20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM--RERIEFLNEASVMKEFNCHHVVRLLGVV   97 (322)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCH--HHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCH--HHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence            44566889999999999999999999874222235688999999754221  2344677899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++|+|.+++..........                    ..........+..++.||+.||+|||++
T Consensus        98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~i~~qi~~~l~~lH~~  157 (322)
T 1p4o_A           98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANN--------------------PVLAPPSLSKMIQMAGEIADGMAYLNAN  157 (322)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHC--------------------TTCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCccEEEEEeCCCCcHHHHHHHhchhhccC--------------------CCCCCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987532100000                    0000011223347889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++.......                                            
T Consensus       158 ~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------  193 (322)
T 1p4o_A          158 KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY--------------------------------------------  193 (322)
T ss_dssp             TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGC--------------------------------------------
T ss_pred             CCccCCCccceEEEcCCCeEEECcCccccccccccc--------------------------------------------
Confidence            999999999999999999999999999843321000                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       194 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~  241 (322)
T 1p4o_A          194 --------------------------------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY  241 (322)
T ss_dssp             --------------------------------EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred             --------------------------------cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCcc
Confidence                                            001123357899999999998889999999999999999999 89999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC------CCcCCCCccc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH------EFFKGINWAL  471 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h------p~f~~~~~~~  471 (517)
                      .+.+..+....+.........  ..      .+..+.+||.+||+.||.+||++.    |+++|      ++|+.++|..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~--~~------~~~~l~~li~~~l~~dp~~Rps~~----e~l~~L~~~~~~~~~~~~~~~  309 (322)
T 1p4o_A          242 QGLSNEQVLRFVMEGGLLDKP--DN------CPDMLFELMRMCWQYNPKMRPSFL----EIISSIKEEMEPGFREVSFYY  309 (322)
T ss_dssp             TTSCHHHHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHHHGGGSCTTHHHHCSTT
T ss_pred             ccCCHHHHHHHHHcCCcCCCC--CC------CCHHHHHHHHHHcCCCcccCcCHH----HHHHHHHHhhccCCccccccc
Confidence            998888887777765432211  11      122489999999999999999997    55554      7887776654


Q ss_pred             c
Q 010140          472 I  472 (517)
Q Consensus       472 ~  472 (517)
                      .
T Consensus       310 ~  310 (322)
T 1p4o_A          310 S  310 (322)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-46  Score=375.55  Aligned_cols=287  Identities=20%  Similarity=0.228  Sum_probs=213.2

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|++++.||+|+||.||+|++.......+++.||||++.....  ......+.+|+.+++.++||||++++++
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~  118 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDNPNIVKLLGV  118 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            35667789999999999999999999998543333568999999976432  2345667789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+++..|+||||+++|+|.+++...............+.      .................+..++.||+.||+|||+
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~  192 (343)
T 1luf_A          119 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS------TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE  192 (343)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCCceEEEEecCCCCcHHHHHHHhCccccccccccccc------ccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999987532111000000000      0000000001122334456789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       193 ~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------  229 (343)
T 1luf_A          193 RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY-------------------------------------------  229 (343)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC-------------------------------------------
T ss_pred             CCeecCCCCcceEEECCCCeEEEeecCCCcccccCcc-------------------------------------------
Confidence            9999999999999999999999999999843321000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       230 ---------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  276 (343)
T 1luf_A          230 ---------------------------------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP  276 (343)
T ss_dssp             ---------------------------------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             ---------------------------------ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCc
Confidence                                             011123468999999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |.+....+....+..+.......  ..      +..+.+||.+||+.||.+||++.    ++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~l~~li~~~l~~~p~~Rps~~----~~~~  328 (343)
T 1luf_A          277 YYGMAHEEVIYYVRDGNILACPE--NC------PLELYNLMRLCWSKLPADRPSFC----SIHR  328 (343)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCT--TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCChHHHHHHHhCCCcCCCCC--CC------CHHHHHHHHHHcccCcccCCCHH----HHHH
Confidence            99998888887777664422111  11      22589999999999999999997    6654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.6e-46  Score=362.75  Aligned_cols=255  Identities=22%  Similarity=0.280  Sum_probs=207.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++++.||+|+||.||+|++..      ++.||+|++.....    ..+.+.+|+.++++++||||+++++++
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~   74 (269)
T 4hcu_A            5 WVIDPSELTFVQEIGSGQFGLVHLGYWLN------KDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVC   74 (269)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETT------TEEEEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             EEeChhhceeeheecCCCccEEEEEEecC------CCeEEEEEeccccc----CHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            45667899999999999999999999863      46799999976532    224567799999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~~i~~~l~~lH~~  125 (269)
T 4hcu_A           75 LEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAET----------------------------LLGMCLDVCEGMAYLEEA  125 (269)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHTTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             ecCCceEEEEEeCCCCcHHHHHHhcC-cccCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999986642 1222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++......                                             
T Consensus       126 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------  160 (269)
T 4hcu_A          126 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ---------------------------------------------  160 (269)
T ss_dssp             TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH---------------------------------------------
T ss_pred             CeecCCcchheEEEcCCCCEEeccccccccccccc---------------------------------------------
Confidence            99999999999999999999999999985432100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       161 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~  208 (269)
T 4hcu_A          161 --------------------------------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY  208 (269)
T ss_dssp             --------------------------------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCC
Confidence                                            011123357889999999998889999999999999999999 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+....+....+...........  .      ...+.+||.+||+.||++||++.    |+++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~li~~~l~~~p~~Rps~~----~ll~~  260 (269)
T 4hcu_A          209 ENRSNSEVVEDISTGFRLYKPRL--A------STHVYQIMNHCWRERPEDRPAFS----RLLRQ  260 (269)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCCTT--S------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCHHHHHHHHhcCccCCCCCc--C------CHHHHHHHHHHccCCcccCcCHH----HHHHH
Confidence            99988888888776533222211  1      12489999999999999999997    77765

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=8.5e-47  Score=368.02  Aligned_cols=263  Identities=23%  Similarity=0.329  Sum_probs=209.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee--c
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE--A  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--~  160 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||+|++...... ......+.+|+.+++.++||||+++++++.  .
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKS-----DGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT   78 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGG
T ss_pred             hhheeeehhccCCCCcEEEEEEECC-----CCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC
Confidence            4789999999999999999999886     6789999998754221 233456778999999999999999999874  4


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC-
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG-  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~-  239 (517)
                      +..+|+||||++||+|.+++............                          ..+..++.||+.||+|||++| 
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~--------------------------~~~~~i~~~i~~~l~~lH~~~~  132 (279)
T 2w5a_A           79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDE--------------------------EFVLRVMTQLTLALKECHRRSD  132 (279)
T ss_dssp             GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCH--------------------------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CceEEEEEeCCCCCCHHHHHHhhcccCCCCCH--------------------------HHHHHHHHHHHHHHHHHhcccC
Confidence            67899999999999999998764211111111                          122478899999999999999 


Q ss_pred             ----ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          240 ----IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       240 ----iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                          |+||||||+|||++.++.+||+|||+++......                                          
T Consensus       133 ~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~------------------------------------------  170 (279)
T 2w5a_A          133 GGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT------------------------------------------  170 (279)
T ss_dssp             -----CCCCCSGGGEEECSSSCEEECCCCHHHHC---C------------------------------------------
T ss_pred             CCCeeEEeccchhhEEEcCCCCEEEecCchheeecccc------------------------------------------
Confidence                9999999999999999999999999984332100                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          .......||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       171 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  214 (279)
T 2w5a_A          171 ------------------------------------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP  214 (279)
T ss_dssp             ------------------------------------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCC
Confidence                                                00112358999999999999889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ||...+..+....+..+......  ...      +.++.+||.+||+.||.+||++.    |+++|+|+.+.
T Consensus       215 p~~~~~~~~~~~~i~~~~~~~~~--~~~------~~~l~~li~~~l~~~p~~Rps~~----~ll~~~~~~~~  274 (279)
T 2w5a_A          215 PFTAFSQKELAGKIREGKFRRIP--YRY------SDELNEIITRMLNLKDYHRPSVE----EILENPLILEH  274 (279)
T ss_dssp             SSCCSSHHHHHHHHHHTCCCCCC--TTS------CHHHHHHHHHHTCSSGGGSCCHH----HHHTSTTCCGG
T ss_pred             CCcccCHHHHHHHHhhcccccCC--ccc------CHHHHHHHHHHcCCCcccCCCHH----HHHhChhhhhh
Confidence            99998887777777765442111  111      22589999999999999999998    99999999753

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=5.6e-47  Score=371.13  Aligned_cols=262  Identities=30%  Similarity=0.462  Sum_probs=212.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++...... ......+.+|+.++++++||||+++++++.+.+.
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~-----~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   95 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRI-----TQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSS   95 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGBS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcC-----CCcEEEEEEecccccc-hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCe
Confidence            579999999999999999999876     6789999998654321 1234567779999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      .|+||||+++++|.+++....  .++..                            .+..++.||+.||.|||++||+||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~--~~~~~----------------------------~~~~i~~qi~~~l~~LH~~~i~H~  145 (287)
T 2wei_A           96 FYIVGELYTGGELFDEIIKRK--RFSEH----------------------------DAARIIKQVFSGITYMHKHNIVHR  145 (287)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--SCCHH----------------------------HHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             EEEEEEccCCCCHHHHHHhcC--CCCHH----------------------------HHHHHHHHHHHHHHHHHHCCeecc
Confidence            999999999999998876532  22222                            224678999999999999999999


Q ss_pred             cCCCCceEEccC---CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          244 DLKPENVLVRED---GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       244 DLKp~NILl~~~---~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      ||||+|||++.+   +.+||+|||++......                                                
T Consensus       146 dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~------------------------------------------------  177 (287)
T 2wei_A          146 DLKPENILLESKEKDCDIKIIDFGLSTCFQQN------------------------------------------------  177 (287)
T ss_dssp             CCCGGGEEESCSSTTCCEEECSTTGGGTBCCC------------------------------------------------
T ss_pred             CCChhhEEEecCCCcccEEEeccCcceeecCC------------------------------------------------
Confidence            999999999754   47999999998432210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......||+.|+|||++.+. ++.++|||||||++|+|++|..||.+.
T Consensus       178 -------------------------------~~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (287)
T 2wei_A          178 -------------------------------TKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGK  225 (287)
T ss_dssp             -------------------------------SSCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------CccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence                                           011223588999999999875 899999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      +..+....+..+...++.....     ..+.++.+||.+||..||.+||++.    |+++||||+...|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~----ell~hp~~~~~~~~  286 (287)
T 2wei_A          226 NEYDILKRVETGKYAFDLPQWR-----TISDDAKDLIRKMLTFHPSLRITAT----QCLEHPWIQKYSSE  286 (287)
T ss_dssp             SHHHHHHHHHHCCCCCCSGGGT-----TSCHHHHHHHHHHTCSSGGGSCCHH----HHHHSHHHHHHCCC
T ss_pred             CHHHHHHHHHcCCCCCCchhhh-----hcCHHHHHHHHHHcccChhhCcCHH----HHhcCHHHhccccC
Confidence            8888888887766544322211     1223589999999999999999998    99999999876553

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-46  Score=375.61  Aligned_cols=287  Identities=18%  Similarity=0.216  Sum_probs=210.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|++++.||+|+||.||+|++........+..||||++.....  ......+.+|+.+|+++ +||||++++++
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  117 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD--SSEREALMSELKMMTQLGSHENIVNLLGA  117 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC--HHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            4566789999999999999999999986433333667899999976532  23456778899999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..|+||||+++|+|.+++...... +.........      .................+..++.||+.||+|||+
T Consensus       118 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  190 (344)
T 1rjb_A          118 CTLSGPIYLIFEYCCYGDLLNYLRSKREK-FSEDEIEYEN------QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF  190 (344)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTC-C---------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCccEEEEecCCCCcHHHHHhhcccc-ccccccchhh------hcccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999765321 1111110000      0000000000112334456789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||++........                                           
T Consensus       191 ~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~-------------------------------------------  227 (344)
T 1rjb_A          191 KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN-------------------------------------------  227 (344)
T ss_dssp             TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTT-------------------------------------------
T ss_pred             CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCcc-------------------------------------------
Confidence            9999999999999999999999999999854321000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       228 ---------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  274 (344)
T 1rjb_A          228 ---------------------------------YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP  274 (344)
T ss_dssp             ---------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ---------------------------------ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCC
Confidence                                             001123357889999999998889999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+......+..+.......+... ..      ..++.+||.+||..||.+||++.    ++++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~li~~~l~~dp~~Rps~~----~l~~~  328 (344)
T 1rjb_A          275 YPGIPVDANFYKLIQNGFKMDQPF-YA------TEEIYIIMQSCWAFDSRKRPSFP----NLTSF  328 (344)
T ss_dssp             STTCCCSHHHHHHHHTTCCCCCCT-TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             cccCCcHHHHHHHHhcCCCCCCCC-CC------CHHHHHHHHHHcCCCchhCcCHH----HHHHH
Confidence            998876666666555443322211 11      23589999999999999999997    77765

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.7e-46  Score=380.07  Aligned_cols=267  Identities=26%  Similarity=0.331  Sum_probs=199.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH--------HHHHHHhHHHHHHHHHHhcCCCCccc
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL--------AIRKKLHRADMEKVILTMLDHPFLPT  153 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~--------~~~~~~~~~~~E~~il~~l~HpnIv~  153 (517)
                      ..++|++++.||+|+||.||+|.+.      .++.||||++.....        .......++.+|+.+|+.++||||++
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYGAVCAGVDS------EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             TTCSCEEEEEEEEETTEEEEEEECT------TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             hccceEEeEEeccCCCEEEEEEECC------CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            4578999999999999999999875      367899998854211        11223466778999999999999999


Q ss_pred             eeeeee-----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHH
Q 010140          154 LYAEFE-----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET  228 (517)
Q Consensus       154 l~~~~~-----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi  228 (517)
                      +++++.     ....+|+||||++ |+|.+++.... ..++..                            .++.++.||
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~----------------------------~~~~~~~qi  143 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR-IVISPQ----------------------------HIQYFMYHI  143 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT-SCCCHH----------------------------HHHHHHHHH
T ss_pred             eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc-cCCCHH----------------------------HHHHHHHHH
Confidence            999984     3447899999996 68888876432 222222                            224788999


Q ss_pred             HHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          229 LLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       229 ~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      +.||.|||++||+||||||+|||++.++.+||+|||+++....                                     
T Consensus       144 ~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~-------------------------------------  186 (362)
T 3pg1_A          144 LLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTA-------------------------------------  186 (362)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC-------------------------------------------
T ss_pred             HHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEecCccccccc-------------------------------------
Confidence            9999999999999999999999999999999999999842211                                     


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFL  387 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil  387 (517)
                                                                ........||+.|+|||++.+ ..++.++|||||||++
T Consensus       187 ------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il  224 (362)
T 3pg1_A          187 ------------------------------------------DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVM  224 (362)
T ss_dssp             ---------------------------------------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHH
T ss_pred             ------------------------------------------ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHH
Confidence                                                      011123468999999999987 5689999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCC---------------------CCCCCCch--hHHhhhhHHHHHHHhccCC
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFP---------------------RIGVSSSK--EFEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p---------------------~~~~~~~~--~~~~~~~l~dLi~~~L~~d  444 (517)
                      |+|++|+.||.+.+..+.+..+.......+                     ........  .......+.+||.+||+.|
T Consensus       225 ~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  304 (362)
T 3pg1_A          225 AEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFN  304 (362)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSS
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCC
Confidence            999999999999887777666643111000                     00000000  0012345899999999999


Q ss_pred             cccccCCCCChHHhhcCCCcCCC
Q 010140          445 PKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       445 P~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      |.+|||+.    |+++||||+++
T Consensus       305 P~~Rpt~~----ell~hp~f~~~  323 (362)
T 3pg1_A          305 PQRRISTE----QALRHPYFESL  323 (362)
T ss_dssp             GGGSCCHH----HHHTSGGGTTT
T ss_pred             hhhCCCHH----HHHcCchhhhc
Confidence            99999998    99999999986

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.5e-46  Score=370.98  Aligned_cols=289  Identities=20%  Similarity=0.204  Sum_probs=214.1

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ...++..++|.+.+.||+|+||.||+|++........++.||||++.....  ......+.+|+.+|+.++||||+++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~   93 (314)
T 2ivs_A           16 PKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENAS--PSELRDLLSEFNVLKQVNHPHVIKLYG   93 (314)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCC--HHHHHHHHHHHHHHhhCCCCceeeEEE
Confidence            345677789999999999999999999986533223568899999975421  234566778999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+.+..|+||||++||+|.+++.................      .................+..++.||+.||+|||
T Consensus        94 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH  167 (314)
T 2ivs_A           94 ACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR------NSSSLDHPDERALTMGDLISFAWQISQGMQYLA  167 (314)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------------CEECHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccc------cccccccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987532110000000000      000000001112333445688999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++.......                                          
T Consensus       168 ~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~------------------------------------------  205 (314)
T 2ivs_A          168 EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDS------------------------------------------  205 (314)
T ss_dssp             HTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSC------------------------------------------
T ss_pred             HCCCcccccchheEEEcCCCCEEEcccccccccccccc------------------------------------------
Confidence            99999999999999999999999999999854321100                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       206 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~  251 (314)
T 2ivs_A          206 ----------------------------------YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN  251 (314)
T ss_dssp             ----------------------------------EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------------------------ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCC
Confidence                                              001123357889999999998889999999999999999999 999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||.+.........+.........  ..      .+.++.+||.+||+.||++||++.    |++++
T Consensus       252 p~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~li~~~l~~dp~~Rps~~----~l~~~  305 (314)
T 2ivs_A          252 PYPGIPPERLFNLLKTGHRMERP--DN------CSEEMYRLMLQCWKQEPDKRPVFA----DISKD  305 (314)
T ss_dssp             SSTTCCGGGHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCHHHHHHHhhcCCcCCCC--cc------CCHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            99998887777666654322111  11      123589999999999999999997    66654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.1e-46  Score=378.46  Aligned_cols=279  Identities=20%  Similarity=0.219  Sum_probs=214.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +++..++|.+++.||+|+||.||+|++.....  ...+..||||++.....  .....++.+|+.+++.+ +||||++++
T Consensus        64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpnIv~~~  141 (382)
T 3tt0_A           64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT--EKDLSDLISEMEMMKMIGKHKNIINLL  141 (382)
T ss_dssp             TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccC--HHHHHHHHHHHHHHHHhcCCchhhhhe
Confidence            34666899999999999999999999865321  12456899999976522  23456777899999999 999999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++...+.+|+||||+++|+|.+++.............              .............++.++.||+.||+||
T Consensus       142 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~i~~qi~~aL~~L  207 (382)
T 3tt0_A          142 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN--------------PSHNPEEQLSSKDLVSCAYQVARGMEYL  207 (382)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCC--------------CCSSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCceEEEEEecCCCcHHHHHHHhcccccccccc--------------cccccccccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998764322111000              0001111223344567899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+||||+.++.+||+|||+++.......                                         
T Consensus       208 H~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~-----------------------------------------  246 (382)
T 3tt0_A          208 ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY-----------------------------------------  246 (382)
T ss_dssp             HHTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCT-----------------------------------------
T ss_pred             HhCCEecCCCCcceEEEcCCCcEEEcccCcccccccccc-----------------------------------------
Confidence            999999999999999999999999999999854321100                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........||+.|+|||++.+..++.++|||||||++|+|++ |.
T Consensus       247 -----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~  291 (382)
T 3tt0_A          247 -----------------------------------YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG  291 (382)
T ss_dssp             -----------------------------------TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCC
Confidence                                               011223357889999999999999999999999999999999 99


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+....+....+.........  ...      ..++.+||.+||+.||++||++.    |++++
T Consensus       292 ~p~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~li~~~l~~dP~~Rps~~----ell~~  346 (382)
T 3tt0_A          292 SPYPGVPVEELFKLLKEGHRMDKP--SNC------TNELYMMMRDCWHAVPSQRPTFK----QLVED  346 (382)
T ss_dssp             CSSTTCCHHHHHHHHHTTCCCCCC--SSC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCCHHHHHHHHHcCCCCCCC--ccC------CHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            999998888877777665432211  111      22589999999999999999997    66664

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=5.4e-46  Score=375.25  Aligned_cols=263  Identities=29%  Similarity=0.374  Sum_probs=203.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|.+.+.||+|+||.||+|+++.     +++.||||++..... ......++.+|+.+++.++||||+++++++....
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   96 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKR-----SGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPAS   96 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEESSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCS
T ss_pred             CceEEEeeeEecCCCeEEEEEEECC-----CCCEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCcccHhheEeccc
Confidence            3689999999999999999999886     678999999865321 1233456778999999999999999999998765


Q ss_pred             e------eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 Y------SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ~------~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .      +|+||||+. |+|.+++..    .++..                            .++.++.||+.||+|||
T Consensus        97 ~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~----------------------------~~~~i~~qi~~al~~LH  143 (353)
T 3coi_A           97 SLRNFYDFYLVMPFMQ-TDLQKIMGL----KFSEE----------------------------KIQYLVYQMLKGLKYIH  143 (353)
T ss_dssp             SGGGCCCCEEEEECCS-EEGGGTTTS----CCCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ccccceeEEEEecccc-CCHHHHhcC----CCCHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            4      499999996 688776532    22222                            22477899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++....                                             
T Consensus       144 ~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~---------------------------------------------  178 (353)
T 3coi_A          144 SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---------------------------------------------  178 (353)
T ss_dssp             HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC------------------------------------------------
T ss_pred             HCCcccCCCCHHHEeECCCCcEEEeecccccCCCC---------------------------------------------
Confidence            99999999999999999999999999999843210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                          ......||+.|+|||++.+ ..++.++|||||||++|+|++|..
T Consensus       179 ------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~  222 (353)
T 3coi_A          179 ------------------------------------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT  222 (353)
T ss_dssp             -----------------------------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                1123468999999999987 568999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCC-----------------------CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLT-----------------------FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~-----------------------~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||.+.+..+.+..+......                       .+...... .......++.+||.+||+.||++|||+.
T Consensus       223 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dp~~Rpt~~  301 (353)
T 3coi_A          223 LFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ-LFPRASPQAADLLEKMLELDVDKRLTAA  301 (353)
T ss_dssp             SSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTT-TCTTSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHH-hcCCcCHHHHHHHHHHcCCCcccCCCHH
Confidence            99998877666555431000                       00000000 0001234689999999999999999998


Q ss_pred             CChHHhhcCCCcCCCCcc
Q 010140          453 KGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       453 ~~~~ell~hp~f~~~~~~  470 (517)
                          |+++||||+.....
T Consensus       302 ----e~l~hp~f~~~~~~  315 (353)
T 3coi_A          302 ----QALTHPFFEPFRDP  315 (353)
T ss_dssp             ----HHHTSGGGTTTCCG
T ss_pred             ----HHhcCcchhhccCc
Confidence                99999999976554

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.2e-46  Score=372.08  Aligned_cols=271  Identities=21%  Similarity=0.275  Sum_probs=201.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee--
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE--  159 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~--  159 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++....   ....+.+.+|+.+++.++||||+++++++.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   80 (320)
T 2i6l_A            9 LGSRYMDLKPLGCGGNGLVFSAVDND-----CDKRVAIKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVFEILGPS   80 (320)
T ss_dssp             ETTTEEEEEECC-----CEEEEEETT-----TTEEEEEEEEECCS---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTT
T ss_pred             cCCceeEEEEeccCCCeEEEEEEECC-----CCeEEEEEEEecCC---hHHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence            35789999999999999999999886     67899999986542   233456778999999999999999999873  


Q ss_pred             ------------cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHH
Q 010140          160 ------------ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE  227 (517)
Q Consensus       160 ------------~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  227 (517)
                                  .....|+||||++ |+|.+++...   .+....                            ++.++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~----------------------------~~~~~~q  128 (320)
T 2i6l_A           81 GSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQG---PLLEEH----------------------------ARLFMYQ  128 (320)
T ss_dssp             SCBCCC----CCSCSEEEEEEECCS-EEHHHHHTTC---CCCHHH----------------------------HHHHHHH
T ss_pred             ccccccccccccccCceeEEeeccC-CCHHHHhhcC---CccHHH----------------------------HHHHHHH
Confidence                        4467899999996 6999888542   222222                            2367899


Q ss_pred             HHHHHHHHHhcCceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccc
Q 010140          228 TLLALEYLHMMGIVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSC  306 (517)
Q Consensus       228 i~~aL~yLH~~~iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (517)
                      |+.||+|||++||+||||||+|||++ .++.+||+|||+++.......                                
T Consensus       129 i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~--------------------------------  176 (320)
T 2i6l_A          129 LLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYS--------------------------------  176 (320)
T ss_dssp             HHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC-------------------------------------
T ss_pred             HHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcc--------------------------------
Confidence            99999999999999999999999997 567999999999854321000                                


Q ss_pred             ccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHH
Q 010140          307 FSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGV  385 (517)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGv  385 (517)
                                                                 .........||+.|+|||++.+ ..++.++|||||||
T Consensus       177 -------------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  213 (320)
T 2i6l_A          177 -------------------------------------------HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGC  213 (320)
T ss_dssp             ----------------------------------------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHH
T ss_pred             -------------------------------------------cccccccccccccccCcHHhcCcccCCchhhhHhHHH
Confidence                                                       0011223468999999999876 56899999999999


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCC-------------------CCCCchh--HHhhhhHHHHHHHhccCC
Q 010140          386 FLYEMLYGTTPFKGENNEKTLINILKKPLTFPRI-------------------GVSSSKE--FEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       386 il~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~-------------------~~~~~~~--~~~~~~l~dLi~~~L~~d  444 (517)
                      ++|+|++|+.||.+....+.+..+..........                   .......  ...+.++.+||.+||+.|
T Consensus       214 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  293 (320)
T 2i6l_A          214 IFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFS  293 (320)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSS
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCC
Confidence            9999999999999988877776665432111000                   0000000  012346899999999999


Q ss_pred             cccccCCCCChHHhhcCCCcCCCCccc
Q 010140          445 PKKRIGSLKGSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       445 P~~R~t~~~~~~ell~hp~f~~~~~~~  471 (517)
                      |++||++.    |+++||||+..+|..
T Consensus       294 P~~Rpt~~----ell~hp~~~~~~~p~  316 (320)
T 2i6l_A          294 PMDRLTAE----EALSHPYMSIYSFPM  316 (320)
T ss_dssp             GGGSCCHH----HHHTSHHHHTTCC--
T ss_pred             ccccCCHH----HHhCCcccccccCcc
Confidence            99999998    999999999888743

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=8.3e-46  Score=364.84  Aligned_cols=273  Identities=25%  Similarity=0.416  Sum_probs=200.9

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec---
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA---  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~---  160 (517)
                      ++|++++.||+|+||.||+|++..     +++.||||++....    .....+.+|+.+++.++||||+++++++.+   
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   76 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNAL-----DSRYYAIKKIRHTE----EKLSTILSEVMLLASLNHQYVVRYYAAWLERRN   76 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEEEH----HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCC
T ss_pred             ccchhhheeccCCcEEEEEEEEcC-----CCeEEEEEEEeccH----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcc
Confidence            579999999999999999999876     67899999997543    334567779999999999999999998854   


Q ss_pred             ----------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          161 ----------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       161 ----------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                                ....|+||||++||+|.+++.... ..+...                            .+..++.||+.
T Consensus        77 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~  127 (303)
T 1zy4_A           77 FVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRD----------------------------EYWRLFRQILE  127 (303)
T ss_dssp             CCC------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHH----------------------------HHHHHHHHHHH
T ss_pred             hhhhhcccccCCceEEEEecCCCCCHHHhhhccc-cccchH----------------------------HHHHHHHHHHH
Confidence                      467899999999999999987642 111111                            22367899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSV  310 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (517)
                      ||+|||++||+||||||+|||++.++.+||+|||++.............                               
T Consensus       128 ~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~-------------------------------  176 (303)
T 1zy4_A          128 ALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD-------------------------------  176 (303)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC---------------------------------------
T ss_pred             HHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccc-------------------------------
Confidence            9999999999999999999999999999999999985433211000000                               


Q ss_pred             ccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHH
Q 010140          311 SHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~e  389 (517)
                                                       ...............||+.|+|||++.+. .++.++|||||||++|+
T Consensus       177 ---------------------------------~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~  223 (303)
T 1zy4_A          177 ---------------------------------SQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFE  223 (303)
T ss_dssp             --------------------------------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHH
T ss_pred             ---------------------------------cccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHH
Confidence                                             00000001122345799999999999875 58999999999999999


Q ss_pred             HhhCCCCCCCC-ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          390 MLYGTTPFKGE-NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       390 lltG~~Pf~~~-~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      |++   ||... +.......+......+|......     ....+.+||.+||+.||.+||++.    ++++||||+...
T Consensus       224 l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~li~~~l~~dp~~Rps~~----~ll~h~~~~~~~  291 (303)
T 1zy4_A          224 MIY---PFSTGMERVNILKKLRSVSIEFPPDFDDN-----KMKVEKKIIRLLIDHDPNKRPGAR----TLLNSGWLPVKH  291 (303)
T ss_dssp             HHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTT-----TSHHHHHHHHHHTCSSGGGSCCHH----HHHHSSCSCCCC
T ss_pred             HHh---ccCCchhHHHHHHhccccccccCcccccc-----chHHHHHHHHHHHhcCcccCcCHH----HHhCCCCcCCCC
Confidence            998   55533 33445555555544444332221     122489999999999999999998    999999999876


Q ss_pred             cc
Q 010140          469 WA  470 (517)
Q Consensus       469 ~~  470 (517)
                      +.
T Consensus       292 ~~  293 (303)
T 1zy4_A          292 QD  293 (303)
T ss_dssp             HH
T ss_pred             hH
Confidence            65

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=3.2e-46  Score=372.55  Aligned_cols=262  Identities=19%  Similarity=0.203  Sum_probs=200.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|++...... ....||+|++....  .......+.+|+.+++.++||||+++++++
T Consensus         8 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-~~~kv~~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   84 (325)
T 3kex_A            8 RIFKETELRKLKVLGSGVFGTVHKGVWIPEGES-IKIPVCIKVIEDKS--GRQSFQAVTDHMLAIGSLDHAHIVRLLGLC   84 (325)
T ss_dssp             CBCCTTTEEEEEEEECCSSCEEEEEEECCTTCS-CCEEEEEEEECCTT--SCSCBCSCCHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhcCHhHceeeeeeeecCCceEEEEEEcCCCce-EEEEEEEEeccccc--cHHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            345668999999999999999999998763211 22347888775432  112344566799999999999999999998


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      . +...|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        85 ~-~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~  134 (325)
T 3kex_A           85 P-GSSLQLVTQYLPLGSLLDHVRQHR-GALGPQL----------------------------LLNWGVQIAKGMYYLEEH  134 (325)
T ss_dssp             C-BSSEEEEEECCTTCBSHHHHHSSG-GGSCTTH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             c-CCccEEEEEeCCCCCHHHHHHHcc-ccCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            6 466899999999999999887542 2233322                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++.+.....                                            
T Consensus       135 ~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~--------------------------------------------  170 (325)
T 3kex_A          135 GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDK--------------------------------------------  170 (325)
T ss_dssp             TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTT--------------------------------------------
T ss_pred             CCCCCccchheEEECCCCeEEECCCCcccccCcccc--------------------------------------------
Confidence            999999999999999999999999999854331100                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       171 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~  218 (325)
T 3kex_A          171 --------------------------------QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPY  218 (325)
T ss_dssp             --------------------------------CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCc
Confidence                                            011223468889999999998889999999999999999999 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+....+....+............        ..++.+||.+||..||.+||++.    |+++|
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~li~~~l~~dp~~Rps~~----el~~~  270 (325)
T 3kex_A          219 AGLRLAEVPDLLEKGERLAQPQIC--------TIDVYMVMVKCWMIDENIRPTFK----ELANE  270 (325)
T ss_dssp             TTSCTTHHHHHHHTTCBCCCCTTB--------CTTTTHHHHHHTCSCTTTSCCHH----HHHHH
T ss_pred             cccCHHHHHHHHHcCCCCCCCCcC--------cHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            998877777766654322211111        12478999999999999999997    66654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=2.9e-46  Score=373.68  Aligned_cols=272  Identities=19%  Similarity=0.259  Sum_probs=205.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~  160 (517)
                      ..++|++++.||+|+||.||+|++..     +++.||||++...     .....+.+|+.+++.+ +||||+++++++..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   76 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNLY-----TNEYVAIKLEPMK-----SRAPQLHLEYRFYKQLGSGDGIPQVYYFGPC   76 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEETT-----TTEEEEEEEEETT-----CSSCCHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             EcCCeEEEEEeeccCCceEEEEEECC-----CCcEEEEEEeccc-----cchHHHHHHHHHHHHhhCCCCCCEEEEEEec
Confidence            34789999999999999999999876     6789999998754     2234567799999999 99999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++..|+||||+ +++|.+++.... ..++...                            ++.++.||+.||+|||++||
T Consensus        77 ~~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~LH~~~i  126 (330)
T 2izr_A           77 GKYNAMVLELL-GPSLEDLFDLCD-RTFSLKT----------------------------VLMIAIQLISRMEYVHSKNL  126 (330)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCccEEEEEeC-CCCHHHHHHHcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCe
Confidence            99999999999 999999987642 2333322                            23788999999999999999


Q ss_pred             eeccCCCCceEEccCCc-----EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGH-----IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~-----vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      +||||||+|||++.++.     +||+|||+++.+.......                                       
T Consensus       127 iHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~---------------------------------------  167 (330)
T 2izr_A          127 IYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKK---------------------------------------  167 (330)
T ss_dssp             ECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCC---------------------------------------
T ss_pred             eccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCc---------------------------------------
Confidence            99999999999998887     9999999985433211000                                       


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                      ..........+||+.|+|||++.+..++.++|||||||++|||++|..
T Consensus       168 --------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~  215 (330)
T 2izr_A          168 --------------------------------HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSL  215 (330)
T ss_dssp             --------------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             --------------------------------cccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCC
Confidence                                            000112245689999999999999999999999999999999999999


Q ss_pred             CCCCCCh---HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh-------cCCCcC
Q 010140          396 PFKGENN---EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK-------RHEFFK  465 (517)
Q Consensus       396 Pf~~~~~---~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell-------~hp~f~  465 (517)
                      ||.+...   .+.+..+.......+...     .....+++.+||..||+.||.+||++.+.. +++       ...+..
T Consensus       216 Pf~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~p~~~~li~~~l~~~p~~RP~~~~l~-~~l~~~~~~~~~~~~~  289 (330)
T 2izr_A          216 PWQGLKADTLKERYQKIGDTKRATPIEV-----LCENFPEMATYLRYVRRLDFFEKPDYDYLR-KLFTDLFDRKGYMFDY  289 (330)
T ss_dssp             TTTTCCCSSHHHHHHHHHHHHHHSCHHH-----HTTTCHHHHHHHHHHHHCCTTCCCCHHHHH-HHHHHHHHHTTCCCSC
T ss_pred             CccccccccHHHHHHHHHhhhccCCHHH-----HhccChHHHHHHHHHHhCCCCCCCCHHHHH-HHHHHHHHHcCCCCCC
Confidence            9987533   344444433222222100     000012589999999999999999985221 222       234455


Q ss_pred             CCCcc
Q 010140          466 GINWA  470 (517)
Q Consensus       466 ~~~~~  470 (517)
                      ..+|.
T Consensus       290 ~~dw~  294 (330)
T 2izr_A          290 EYDWI  294 (330)
T ss_dssp             CCTTT
T ss_pred             CccCC
Confidence            68887

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.9e-46  Score=376.04  Aligned_cols=256  Identities=25%  Similarity=0.369  Sum_probs=175.7

Q ss_pred             CCCCceEEe-eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           82 GLDHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~-~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ..++|.+++ .||+|+||.||+|+++.     +++.||||++.......    .   .....++.++||||+++++++..
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~~----~---e~~~~~~~~~h~~i~~~~~~~~~   93 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRR-----TGQKCALKLLYDSPKAR----Q---EVDHHWQASGGPHIVCILDVYEN   93 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEESSHHHH----H---HHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECC-----CCCEEEEEEecCcHHHH----H---HHHHHHHhcCCCChHHHHHHHhh
Confidence            347899965 69999999999999986     67899999997643211    1   12234566799999999999976


Q ss_pred             ----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          161 ----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       161 ----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                          +..+|+|||||+||+|.+++.......++....                            +.++.||+.||.|||
T Consensus        94 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~----------------------------~~i~~ql~~~l~~LH  145 (336)
T 3fhr_A           94 MHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREA----------------------------AEIMRDIGTAIQFLH  145 (336)
T ss_dssp             EETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence                556899999999999999998764444444333                            367899999999999


Q ss_pred             hcCceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      ++||+||||||+|||++.   ++.+||+|||+++....                                          
T Consensus       146 ~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~------------------------------------------  183 (336)
T 3fhr_A          146 SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ------------------------------------------  183 (336)
T ss_dssp             HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------------------------------------
T ss_pred             hCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc------------------------------------------
Confidence            999999999999999976   45699999999843221                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                            ......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       184 --------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  225 (336)
T 3fhr_A          184 --------------------------------------NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG  225 (336)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHC
Confidence                                                  011234689999999999888899999999999999999999


Q ss_pred             CCCCCCCChHHH----HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          394 TTPFKGENNEKT----LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       394 ~~Pf~~~~~~~~----~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ..||.+......    ...+......++.....     ..+.++.+||.+||+.||.+|||+.    |+++||||+.
T Consensus       226 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dP~~Rpt~~----ell~hp~~~~  293 (336)
T 3fhr_A          226 FPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWS-----EVSEDAKQLIRLLLKTDPTERLTIT----QFMNHPWINQ  293 (336)
T ss_dssp             SCCC---------------------CCCTTTST-----TCCHHHHHHHHHHSCSSGGGSCCHH----HHHHSHHHHT
T ss_pred             CCCCCCccchhhhhhHHHhhhccccccCchhhc-----cCCHHHHHHHHHHCCCChhHCcCHH----HHhcCccccc
Confidence            999987655433    22222222222222111     1223589999999999999999998    9999999986

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=7.1e-46  Score=359.43  Aligned_cols=254  Identities=20%  Similarity=0.250  Sum_probs=206.1

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++++.||+|+||.||+|+++.      +..||+|++.....    ....+.+|+.+++.++||||+++++++.
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~   73 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWKG------QYDVAVKMIKEGSM----SEDEFFQEAQTMMKLSHPKLVKFYGVCS   73 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETT------TEEEEEEEECBTTB----CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             EechhheeeeeeeccCCCceEEEEEecC------ceeEEEEEeccCCC----cHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            4567899999999999999999998763      46799999976532    2244667999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+..|+||||+++++|.+++.... ..++..                            .+..++.||+.||+|||++|
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~~l~~lH~~~  124 (268)
T 3sxs_A           74 KEYPIYIVTEYISNGCLLNYLRSHG-KGLEPS----------------------------QLLEMCYDVCEGMAFLESHQ  124 (268)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHHG-GGCCHH----------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCceEEEEEccCCCcHHHHHHHcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999987642 122222                            22467899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||++........                                             
T Consensus       125 i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---------------------------------------------  159 (268)
T 3sxs_A          125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY---------------------------------------------  159 (268)
T ss_dssp             EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE---------------------------------------------
T ss_pred             eecCCcCcceEEECCCCCEEEccCccceecchhhh---------------------------------------------
Confidence            99999999999999999999999999854321100                                             


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                      .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.
T Consensus       160 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  207 (268)
T 3sxs_A          160 --------------------------------VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYD  207 (268)
T ss_dssp             --------------------------------EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             --------------------------------hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcc
Confidence                                            01122357888999999998889999999999999999999 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .....+....+............        +..+.+||.+||+.||.+||++.    |+++|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~li~~~l~~~p~~Rps~~----~ll~~  258 (268)
T 3sxs_A          208 LYTNSEVVLKVSQGHRLYRPHLA--------SDTIYQIMYSCWHELPEKRPTFQ----QLLSS  258 (268)
T ss_dssp             TSCHHHHHHHHHTTCCCCCCTTS--------CHHHHHHHHHTTCSSGGGSCCHH----HHHHH
T ss_pred             ccChHHHHHHHHcCCCCCCCCcC--------hHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            98888888777765543332211        12489999999999999999997    77765

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=6.4e-46  Score=362.70  Aligned_cols=257  Identities=22%  Similarity=0.268  Sum_probs=204.9

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..+.+..++|++++.||+|+||.||+|+++.      +..||||++.....    ....+.+|+.+++.++||||+++++
T Consensus        17 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~   86 (283)
T 3gen_A           17 GSWEIDPKDLTFLKELGTGQFGVVKYGKWRG------QYDVAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYG   86 (283)
T ss_dssp             CTTBCCGGGEEEEEECC---CEEEEEEEETT------TEEEEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             CCccCCHHHHHhHhhcCCCCCceEEEEEEcC------CCeEEEEEecCCCC----CHHHHHHHHHHHhcCCCCCEeeEEE
Confidence            3456777899999999999999999998763      56799999976532    2245667999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+.+..|+||||+++|+|.+++.... ..++..                            .+..++.||+.||+|||
T Consensus        87 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~~l~~lH  137 (283)
T 3gen_A           87 VCTKQRPIFIITEYMANGCLLNYLREMR-HRFQTQ----------------------------QLLEMCKDVCEAMEYLE  137 (283)
T ss_dssp             EECSSSSEEEEECCCTTCBHHHHHHCGG-GCCCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCeEEEEeccCCCcHHHHHHHhc-cCCCHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986532 122222                            22477899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++......                                           
T Consensus       138 ~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-------------------------------------------  174 (283)
T 3gen_A          138 SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-------------------------------------------  174 (283)
T ss_dssp             HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-------------------------------------------
T ss_pred             HCCccCCCCccceEEEcCCCCEEEccccccccccccc-------------------------------------------
Confidence            9999999999999999999999999999985432100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       175 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~  220 (283)
T 3gen_A          175 ----------------------------------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM  220 (283)
T ss_dssp             ----------------------------------HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ----------------------------------cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                                              001122357889999999998889999999999999999998 999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||...+..+....+............  .      ..+.+||.+||+.||.+||++.    |+++|
T Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~l~~li~~~l~~~p~~Rps~~----~ll~~  274 (283)
T 3gen_A          221 PYERFTNSETAEHIAQGLRLYRPHLA--S------EKVYTIMYSCWHEKADERPTFK----ILLSN  274 (283)
T ss_dssp             TTTTSCHHHHHHHHHTTCCCCCCTTC--C------HHHHHHHHHTTCSSGGGSCCHH----HHHHH
T ss_pred             CccccChhHHHHHHhcccCCCCCCcC--C------HHHHHHHHHHccCChhHCcCHH----HHHHH
Confidence            99998888888877765433222111  1      2489999999999999999997    77765

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=7.5e-46  Score=367.36  Aligned_cols=282  Identities=17%  Similarity=0.215  Sum_probs=209.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +++..++|++.+.||+|+||.||+|++.......+++.||||++......  .....+.+|+.+++++ +||||++++++
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~~   95 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHMNIVNLLGA   95 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhH--HHHHHHHHHHHHHhhcccCCCeeeEEEE
Confidence            45667899999999999999999999754333336789999999754321  2345677899999999 99999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..|+||||+++|+|.+++................            ............+..++.||+.||+|||+
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  163 (313)
T 1t46_A           96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI------------MEDDELALDLEDLLSFSYQVAKGMAFLAS  163 (313)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcEEEEecCCCCCHHHHHHhcccccccccccccc------------cccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998754221100000000            00000112233445789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       164 ~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------  200 (313)
T 1t46_A          164 KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN-------------------------------------------  200 (313)
T ss_dssp             TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTT-------------------------------------------
T ss_pred             CCeecCCCccceEEEcCCCCEEEcccccccccccccc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       201 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p  247 (313)
T 1t46_A          201 ---------------------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP  247 (313)
T ss_dssp             ---------------------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------------------------ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence                                             001123357889999999999889999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+......+..........+... .      .+..+.+||.+||+.||.+||++.    |++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~~l~~dp~~Rps~~----ell~~  301 (313)
T 1t46_A          248 YPGMPVDSKFYKMIKEGFRMLSPE-H------APAEMYDIMKTCWDADPLKRPTFK----QIVQL  301 (313)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCT-T------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCcccchhHHHHHhccCCCCCCcc-c------CCHHHHHHHHHHcCCCchhCcCHH----HHHHH
Confidence            998776555555544332222111 1      122589999999999999999997    66653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3.3e-46  Score=379.29  Aligned_cols=264  Identities=23%  Similarity=0.384  Sum_probs=200.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-----------CC
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-----------HP  149 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----------Hp  149 (517)
                      +..++|++++.||+|+||.||+|++..     +++.||||++.....    ....+.+|+.+++++.           ||
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~~~~~~~~~~~~~~   86 (373)
T 1q8y_A           16 YKDARYILVRKLGWGHFSTVWLAKDMV-----NNTHVAMKIVRGDKV----YTEAAEDEIKLLQRVNDADNTKEDSMGAN   86 (373)
T ss_dssp             ETTTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSCHH----HHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred             ccCCeEEEEEeeeecCCeEEEEEEecC-----CCcEEEEEEecCCcc----chhhhhHHHHHHHHhhcccccchhccccc
Confidence            445789999999999999999999876     678999999986532    2344566888888875           89


Q ss_pred             CccceeeeeecCc----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHH
Q 010140          150 FLPTLYAEFEASH----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYA  225 (517)
Q Consensus       150 nIv~l~~~~~~~~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (517)
                      ||+++++++...+    .+++||||+ +++|.+++.......++....                            +.++
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~----------------------------~~i~  137 (373)
T 1q8y_A           87 HILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYV----------------------------KQIS  137 (373)
T ss_dssp             TBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHH----------------------------HHHH
T ss_pred             hHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHH----------------------------HHHH
Confidence            9999999997654    789999999 999999998754444443332                            3678


Q ss_pred             HHHHHHHHHHHhc-CceeccCCCCceEEcc------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCC
Q 010140          226 AETLLALEYLHMM-GIVYRDLKPENVLVRE------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCAT  298 (517)
Q Consensus       226 ~qi~~aL~yLH~~-~iiHrDLKp~NILl~~------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (517)
                      .||+.||+|||++ ||+||||||+|||++.      .+.+||+|||+++....                           
T Consensus       138 ~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~---------------------------  190 (373)
T 1q8y_A          138 KQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE---------------------------  190 (373)
T ss_dssp             HHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB---------------------------
T ss_pred             HHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCC---------------------------
Confidence            9999999999998 9999999999999953      44899999999843221                           


Q ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccc
Q 010140          299 PMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAV  378 (517)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~  378 (517)
                                                                            .....+||+.|+|||++.+..++.++
T Consensus       191 ------------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~  216 (373)
T 1q8y_A          191 ------------------------------------------------------HYTNSIQTREYRSPEVLLGAPWGCGA  216 (373)
T ss_dssp             ------------------------------------------------------CCCSCCSCGGGCCHHHHHTCCCCTHH
T ss_pred             ------------------------------------------------------CCCCCCCCccccCcHHHhCCCCCchH
Confidence                                                                  11234689999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCCC------hHHHHHHHhcCCCCCCCC------------------------CCCC-----
Q 010140          379 DWWTLGVFLYEMLYGTTPFKGEN------NEKTLINILKKPLTFPRI------------------------GVSS-----  423 (517)
Q Consensus       379 DiWSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~~~~p~~------------------------~~~~-----  423 (517)
                      |||||||++|||++|..||.+..      ....+..+.......|..                        ....     
T Consensus       217 Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (373)
T 1q8y_A          217 DIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVL  296 (373)
T ss_dssp             HHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhh
Confidence            99999999999999999998654      222333332211111100                        0000     


Q ss_pred             ----chhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          424 ----SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       424 ----~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                          ........++.+||.+||+.||++|||+.    |+++||||++.
T Consensus       297 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~----ell~hp~f~~~  340 (373)
T 1q8y_A          297 TEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG----GLVNHPWLKDT  340 (373)
T ss_dssp             HHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH----HHHTCGGGTTC
T ss_pred             hhcccCCcchHHHHHHHHHHHhccCccccCCHH----HHhhChhhhcc
Confidence                00012345689999999999999999998    99999999874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.5e-45  Score=357.72  Aligned_cols=253  Identities=24%  Similarity=0.379  Sum_probs=195.8

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH-HHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI-RKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ++..++|++.+.||+|+||.||+|++.       ++.||||++....... ....+.+.+|+.+++.++||||+++++++
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   75 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFGKVYRAFWI-------GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVC   75 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTEEEEEEEET-------TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccchhheeeeeeeccCCCeEEEEEEEc-------CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            356789999999999999999999875       3679999987654322 23356778899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++..|+||||++|++|.+++...   .++...                            +..++.||+.||+|||++
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~----------------------------~~~i~~~l~~~l~~lH~~  124 (271)
T 3dtc_A           76 LKEPNLCLVMEFARGGPLNRVLSGK---RIPPDI----------------------------LVNWAVQIARGMNYLHDE  124 (271)
T ss_dssp             CCC--CEEEEECCTTEEHHHHHTSS---CCCHHH----------------------------HHHHHHHHHHHHHHHHHS
T ss_pred             ecCCceEEEEEcCCCCCHHHHhhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999887532   233222                            236789999999999999


Q ss_pred             C---ceeccCCCCceEEcc--------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccc
Q 010140          239 G---IVYRDLKPENVLVRE--------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCF  307 (517)
Q Consensus       239 ~---iiHrDLKp~NILl~~--------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (517)
                      |   |+||||||+|||++.        ++.+||+|||+++....                                    
T Consensus       125 ~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~------------------------------------  168 (271)
T 3dtc_A          125 AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHR------------------------------------  168 (271)
T ss_dssp             SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC------------------------------------------
T ss_pred             CCCceeecCCchHHEEEecccccccccCcceEEccCCccccccc------------------------------------
Confidence            9   999999999999986        77899999999843221                                    


Q ss_pred             cccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHH
Q 010140          308 SSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFL  387 (517)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil  387 (517)
                                                                  .......||+.|+|||++.+..++.++|||||||++
T Consensus       169 --------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  204 (271)
T 3dtc_A          169 --------------------------------------------TTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLL  204 (271)
T ss_dssp             ---------------------------------------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccCCCCccceeCHHHhccCCCCchhhHHHHHHHH
Confidence                                                        001133689999999999998899999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |+|++|+.||.+.+.......+.......+.... .      +..+.+||.+||+.||.+||++.    |+++|
T Consensus       205 ~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~li~~~l~~~p~~Rps~~----e~l~~  267 (271)
T 3dtc_A          205 WELLTGEVPFRGIDGLAVAYGVAMNKLALPIPST-C------PEPFAKLMEDCWNPDPHSRPSFT----NILDQ  267 (271)
T ss_dssp             HHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTT-C------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             HHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcc-c------CHHHHHHHHHHhcCCcccCcCHH----HHHHH
Confidence            9999999999998887777777665544332221 1      22489999999999999999997    77654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.3e-46  Score=380.19  Aligned_cols=254  Identities=21%  Similarity=0.269  Sum_probs=202.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++.+.||+|+||.||+|+++.     +++.||||++.....  ......+.+|+.+|+.++||||+++++++
T Consensus       109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~  181 (377)
T 3cbl_A          109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRA-----DNTLVAVKSCRETLP--PDLKAKFLQEARILKQYSHPNIVRLIGVC  181 (377)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEECCTTSC--HHHHTTTTHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cEEchHHeEEeeEeccCCCCeEEEEEEec-----CCeEEEEEEccccCC--HHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            45667899999999999999999999986     578899999875421  23345677799999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ...+.+|+|||||+||+|.+++.... ..++..                            .+..++.||+.||+|||++
T Consensus       182 ~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~----------------------------~~~~~~~qi~~~l~~LH~~  232 (377)
T 3cbl_A          182 TQKQPIYIVMELVQGGDFLTFLRTEG-ARLRVK----------------------------TLLQMVGDAAAGMEYLESK  232 (377)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHG-GGCCHH----------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHH----------------------------HHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987532 122222                            2247889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++.......                                            
T Consensus       233 ~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~--------------------------------------------  268 (377)
T 3cbl_A          233 CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY--------------------------------------------  268 (377)
T ss_dssp             TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE--------------------------------------------
T ss_pred             CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce--------------------------------------------
Confidence            999999999999999999999999999843221000                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........+++.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       269 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~  316 (377)
T 3cbl_A          269 --------------------------------AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPY  316 (377)
T ss_dssp             --------------------------------ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             --------------------------------eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                                            000111235778999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+....+....+..+.. .+... .      .+..+.+||.+||+.||++|||+.
T Consensus       317 ~~~~~~~~~~~~~~~~~-~~~~~-~------~~~~l~~li~~cl~~dP~~Rps~~  363 (377)
T 3cbl_A          317 PNLSNQQTREFVEKGGR-LPCPE-L------CPDAVFRLMEQCWAYEPGQRPSFS  363 (377)
T ss_dssp             TTSCHHHHHHHHHTTCC-CCCCT-T------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCHHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHcCCCchhCcCHH
Confidence            99888777666655432 11111 1      122489999999999999999997

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.5e-45  Score=359.88  Aligned_cols=259  Identities=25%  Similarity=0.326  Sum_probs=196.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|++.....  .+..||+|++.....  ....+.+.+|+.+++.++||||+++++++
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   85 (281)
T 1mp8_A           10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPEN--PALAVAIKTCKNCTS--DSVREKFLQEALTMRQFDHPHIVKLIGVI   85 (281)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC----CCEEEEEEECTTTTS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eEEehHHeEEEeEeeecCCeeEEEEEEecCCC--CceEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence            45667899999999999999999999875321  456799999875321  23445677899999999999999999998


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      . ++..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        86 ~-~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~  135 (281)
T 1mp8_A           86 T-ENPVWIIMELCTLGELRSFLQVRK-YSLDLAS----------------------------LILYAYQLSTALAYLESK  135 (281)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             c-cCccEEEEecCCCCCHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            5 467899999999999999987642 1222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++......                                             
T Consensus       136 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------  170 (281)
T 1mp8_A          136 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST---------------------------------------------  170 (281)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECC--------------------------------------------------------
T ss_pred             CeecccccHHHEEECCCCCEEECccccccccCccc---------------------------------------------
Confidence            99999999999999999999999999985432100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       171 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf  218 (281)
T 1mp8_A          171 --------------------------------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF  218 (281)
T ss_dssp             ----------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCC
Confidence                                            001122357889999999998889999999999999999996 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+....+....+.........  ..      .+..+.+||.+||+.||++||++.    |+++
T Consensus       219 ~~~~~~~~~~~i~~~~~~~~~--~~------~~~~l~~li~~~l~~~p~~Rps~~----~l~~  269 (281)
T 1mp8_A          219 QGVKNNDVIGRIENGERLPMP--PN------CPPTLYSLMTKCWAYDPSRRPRFT----ELKA  269 (281)
T ss_dssp             TTCCGGGHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CcCCHHHHHHHHHcCCCCCCC--CC------CCHHHHHHHHHHccCChhhCcCHH----HHHH
Confidence            998888777777665322111  11      123589999999999999999997    6664

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=369.15  Aligned_cols=264  Identities=20%  Similarity=0.263  Sum_probs=198.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|+++.     +++.||+|++....   ......+.+|+.+|+.++||||+++++++.+
T Consensus         7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~-----~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   78 (310)
T 3s95_A            7 FRPSDLIHGEVLGKGCFGQAIKVTHRE-----TGEVMVMKELIRFD---EETQRTFLKEVKVMRCLEHPNVLKFIGVLYK   78 (310)
T ss_dssp             ECGGGEEEEEEEECCSSEEEEEEEETT-----TCCEEEEEEESCCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             eChhHeeccceecCCCCEEEEEEEECC-----CCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCcCcccEEEEEec
Confidence            456899999999999999999999986     67899999885432   2334567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++..|+||||++||+|.+++.... ..++...                            +..++.||+.||+|||++||
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~al~~lH~~~i  129 (310)
T 3s95_A           79 DKRLNFITEYIKGGTLRGIIKSMD-SQYPWSQ----------------------------RVSFAKDIASGMAYLHSMNI  129 (310)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHCC-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCeeEEEEEecCCCcHHHHHHhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999987642 2233222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++............                                         
T Consensus       130 vH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~-----------------------------------------  168 (310)
T 3s95_A          130 IHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL-----------------------------------------  168 (310)
T ss_dssp             ECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------------------------------------
T ss_pred             cCCCCCcCeEEECCCCCEEEeecccceeccccccccccc-----------------------------------------
Confidence            999999999999999999999999986543211100000                                         


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                             .....+........+||+.|+|||++.+..++.++|||||||++|||++|..||...
T Consensus       169 -----------------------~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~  225 (310)
T 3s95_A          169 -----------------------RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDY  225 (310)
T ss_dssp             ----------------------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             -----------------------ccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence                                   000001112233568999999999999999999999999999999999999998753


Q ss_pred             ChHH-----HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          401 NNEK-----TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       401 ~~~~-----~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ....     .........  .+..         .+..+.+||.+||+.||++||++.    ++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~--~~~~---------~~~~l~~li~~~l~~dP~~Rps~~----~l~~  275 (310)
T 3s95_A          226 LPRTMDFGLNVRGFLDRY--CPPN---------CPPSFFPITVRCCDLDPEKRPSFV----KLEH  275 (310)
T ss_dssp             SCBCTTSSBCHHHHHHHT--CCTT---------CCTTHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             hhhHHHHhhhhhcccccc--CCCC---------CCHHHHHHHHHHccCChhhCcCHH----HHHH
Confidence            2211     011111110  0111         112489999999999999999997    6665

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.6e-45  Score=360.92  Aligned_cols=254  Identities=19%  Similarity=0.258  Sum_probs=198.1

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ++..++|++.+.||+|+||.||+|+++....  ...+..||+|++....   ....+.+.+|+.+++.++||||++++++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~   80 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH---RNYSESFFEAASMMSKLSHKHLVLNYGV   80 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG---GGGHHHHHHHHHHHHTSCCTTBCCEEEE
T ss_pred             EechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEE
Confidence            4567899999999999999999999886321  1123579999987643   2334567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+++..|+||||++||+|.+++.... ..++...                            ...++.||+.||+|||+
T Consensus        81 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~~L~~LH~  131 (289)
T 4fvq_A           81 CVCGDENILVQEFVKFGSLDTYLKKNK-NCINILW----------------------------KLEVAKQLAAAMHFLEE  131 (289)
T ss_dssp             ECCTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999987642 1122222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCc--------EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGH--------IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~--------vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      +||+||||||+|||++.++.        +||+|||++.....                                      
T Consensus       132 ~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~--------------------------------------  173 (289)
T 4fvq_A          132 NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP--------------------------------------  173 (289)
T ss_dssp             TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC--------------------------------------
T ss_pred             CCeECCCcCcceEEEecCCcccccccceeeeccCcccccccC--------------------------------------
Confidence            99999999999999998887        99999999843210                                      


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLY  388 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~  388 (517)
                                                                  .....||+.|+|||++.+ ..++.++|||||||++|
T Consensus       174 --------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  209 (289)
T 4fvq_A          174 --------------------------------------------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLW  209 (289)
T ss_dssp             --------------------------------------------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHH
Confidence                                                        012247889999999988 66899999999999999


Q ss_pred             HHhhCC-CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          389 EMLYGT-TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       389 elltG~-~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +|++|. +||........ ..........+....         .++.+||.+||+.||.+||++.    |+++|
T Consensus       210 el~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~l~~li~~~l~~dp~~Rps~~----~ll~~  269 (289)
T 4fvq_A          210 EICSGGDKPLSALDSQRK-LQFYEDRHQLPAPKA---------AELANLINNCMDYEPDHRPSFR----AIIRD  269 (289)
T ss_dssp             HHHTTTCCTTTTSCHHHH-HHHHHTTCCCCCCSS---------CTTHHHHHHHSCSSGGGSCCHH----HHHHH
T ss_pred             HHHcCCCCCccccchHHH-HHHhhccCCCCCCCC---------HHHHHHHHHHcCCChhHCcCHH----HHHHH
Confidence            999954 55555444443 344444333333221         2489999999999999999997    77765

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=9.6e-46  Score=368.67  Aligned_cols=255  Identities=19%  Similarity=0.258  Sum_probs=192.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|++.       ++.||||++......    .....+|+.+|+.++||||+++++++
T Consensus        19 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-------~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~   87 (322)
T 3soc_A           19 LYFQSMPLQLLEVKARGRFGCVWKAQLL-------NEYVAVKIFPIQDKQ----SWQNEYEVYSLPGMKHENILQFIGAE   87 (322)
T ss_dssp             EEETTEEEEEEEEEECSTTCEEEEEEET-------TEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred             cccchhhchhhheecccCceEEEEEEEC-------CCEEEEEEeecCchH----HHHHHHHHHHHhcCCCCCchhhccee
Confidence            3466789999999999999999999865       378999999765322    23345589999999999999999999


Q ss_pred             ecCc----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          159 EASH----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       159 ~~~~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      ....    .+|+|||||++|+|.+++...   .+++..                            +..++.||+.||+|
T Consensus        88 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~----------------------------~~~i~~qi~~al~~  136 (322)
T 3soc_A           88 KRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNE----------------------------LCHIAETMARGLAY  136 (322)
T ss_dssp             EEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             ccCCCCCceEEEEEecCCCCCHHHHHHhc---CCCHHH----------------------------HHHHHHHHHHHHHH
Confidence            8643    479999999999999998763   233222                            23678999999999


Q ss_pred             HHhc----------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcc
Q 010140          235 LHMM----------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVL  304 (517)
Q Consensus       235 LH~~----------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (517)
                      ||++          ||+||||||+|||++.++.+||+|||+++.+.....                              
T Consensus       137 LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~------------------------------  186 (322)
T 3soc_A          137 LHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKS------------------------------  186 (322)
T ss_dssp             HTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSC------------------------------
T ss_pred             HHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccC------------------------------
Confidence            9999          999999999999999999999999999854331100                              


Q ss_pred             ccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-----CCCccch
Q 010140          305 SCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-----GHGSAVD  379 (517)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-----~~~~~~D  379 (517)
                                                                    .......+||+.|+|||++.+.     .++.++|
T Consensus       187 ----------------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  220 (322)
T 3soc_A          187 ----------------------------------------------AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRID  220 (322)
T ss_dssp             ----------------------------------------------CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHH
T ss_pred             ----------------------------------------------ccccccCccCccccCHhhcccccccCcCCCccch
Confidence                                                          0112335799999999999874     3566889


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCh---------------HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCC
Q 010140          380 WWTLGVFLYEMLYGTTPFKGENN---------------EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       380 iWSlGvil~elltG~~Pf~~~~~---------------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~d  444 (517)
                      ||||||++|||++|+.||.+...               ...+..........|..... ........++.+||.+||+.|
T Consensus       221 iwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~d  299 (322)
T 3soc_A          221 MYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDY-WQKHAGMAMLCETIEECWDHD  299 (322)
T ss_dssp             HHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHHHHTCSS
T ss_pred             hHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcccc-ccccchHHHHHHHHHHHccCC
Confidence            99999999999999999976421               12222222222222211111 011123345899999999999


Q ss_pred             cccccCCC
Q 010140          445 PKKRIGSL  452 (517)
Q Consensus       445 P~~R~t~~  452 (517)
                      |++|||+.
T Consensus       300 P~~Rps~~  307 (322)
T 3soc_A          300 AEARLSAG  307 (322)
T ss_dssp             GGGSCCHH
T ss_pred             hhhCcCHH
Confidence            99999997

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=9.6e-46  Score=370.19  Aligned_cols=277  Identities=16%  Similarity=0.197  Sum_probs=209.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      ..+..++|++.+.||+|+||.||+|++.........+.||+|++.....  ......+.+|+.+|+.+ +||||++++++
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  118 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH--ADEKEALMSELKIMSHLGQHENIVNLLGA  118 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC--hHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            4566789999999999999999999987654434556899999975432  13345677899999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +...+..|+||||+++|+|.+++....... .. ...              -.+.........+..++.||+.||+|||+
T Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~-~~-~~~--------------~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  182 (333)
T 2i1m_A          119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVL-ET-DPA--------------FAIANSTASTRDLLHFSSQVAQGMAFLAS  182 (333)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHHHHH-SC-C---------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCceEEEEecCCCCcHHHHHHHhcccc-cc-ccc--------------ccccccccCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999987542100 00 000              00001112233445789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       183 ~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------  219 (333)
T 2i1m_A          183 KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN-------------------------------------------  219 (333)
T ss_dssp             TTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTT-------------------------------------------
T ss_pred             CCcccCCcccceEEECCCCeEEECccccccccccccc-------------------------------------------
Confidence            9999999999999999999999999999853321000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       220 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  266 (333)
T 2i1m_A          220 ---------------------------------YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP  266 (333)
T ss_dssp             ---------------------------------SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ---------------------------------eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence                                             001123357889999999998889999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |.+......+..+.......+.... .      +..+.+||.+||+.||.+||++.    |+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~li~~~l~~~p~~Rps~~----~l~~  319 (333)
T 2i1m_A          267 YPGILVNSKFYKLVKDGYQMAQPAF-A------PKNIYSIMQACWALEPTHRPTFQ----QICS  319 (333)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCTT-C------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CcccchhHHHHHHHhcCCCCCCCCC-C------CHHHHHHHHHHhccChhhCcCHH----HHHH
Confidence            9987766655555544332222111 1      12489999999999999999997    6665

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=363.21  Aligned_cols=262  Identities=28%  Similarity=0.402  Sum_probs=200.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|.....||+|+||.||+|++..     +++.||||++.....   .....+.+|+.+++.++||||+++++++..
T Consensus        19 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   90 (295)
T 2clq_A           19 YEYDENGDRVVLGKGTYGIVYAGRDLS-----NQVRIAIKEIPERDS---RYSQPLHEEIALHKHLKHKNIVQYLGSFSE   90 (295)
T ss_dssp             ECBCTTSSBCEEEECSSSEEEEEEETT-----TCCEEEEEEEECCCC------HHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             ccccCCCCcEEEeecCcEEEEEEEECC-----CCeEEEEEEccCCch---HHHHHHHHHHHHHHhCCCCCEeeEeeEEEe
Confidence            445666677799999999999999876     678999999865421   234556779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++++|.+++..... .....+.                          .++.++.||+.||+|||++||
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~--------------------------~~~~~~~qi~~~l~~lH~~~i  143 (295)
T 2clq_A           91 NGFIKIFMEQVPGGSLSALLRSKWG-PLKDNEQ--------------------------TIGFYTKQILEGLKYLHDNQI  143 (295)
T ss_dssp             TTEEEEEEECCSEEEHHHHHHHTTC-CCTTCHH--------------------------HHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCcEEEEEEeCCCCCHHHHHHhhcc-CCCccHH--------------------------HHHHHHHHHHHHHHHHHhCCE
Confidence            9999999999999999999876421 1111111                          123678999999999999999


Q ss_pred             eeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          241 VYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       241 iHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      +||||||+|||++. ++.+||+|||++......                                               
T Consensus       144 ~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------  176 (295)
T 2clq_A          144 VHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI-----------------------------------------------  176 (295)
T ss_dssp             ECCCCSGGGEEEETTTCCEEECCTTTCEESCC------------------------------------------------
T ss_pred             EccCCChhhEEEECCCCCEEEeecccccccCCC-----------------------------------------------
Confidence            99999999999987 899999999998433210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     ........||+.|+|||++.+..  ++.++|||||||++|+|++|..||
T Consensus       177 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  225 (295)
T 2clq_A          177 -------------------------------NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF  225 (295)
T ss_dssp             -----------------------------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             -------------------------------CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence                                           00112346899999999997653  789999999999999999999999


Q ss_pred             CCCChHHH-HHHH--hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          398 KGENNEKT-LINI--LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       398 ~~~~~~~~-~~~i--~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ........ ....  .......+.   ..      ..++.+||.+||+.||++||++.    |+++||||+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~li~~~l~~dp~~Rps~~----~ll~~~~~~~~~  286 (295)
T 2clq_A          226 YELGEPQAAMFKVGMFKVHPEIPE---SM------SAEAKAFILKCFEPDPDKRACAN----DLLVDEFLKVSS  286 (295)
T ss_dssp             GGGSSHHHHHHHHHHHCCCCCCCT---TS------CHHHHHHHHHTTCSSTTTSCCHH----HHHTSGGGCC--
T ss_pred             cCCCchhHHHHhhccccccccccc---cC------CHHHHHHHHHHccCChhhCCCHH----HHhcChhhhhcc
Confidence            76543322 2221  122222221   11      22589999999999999999998    999999998643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.6e-45  Score=360.76  Aligned_cols=253  Identities=20%  Similarity=0.244  Sum_probs=206.6

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++.+.||+|+||.||+|.++.     ++..||+|++....    .....+.+|+.+++.++||||++++++
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~   77 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKK-----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV   77 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGG-----GTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecC-----CCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            456677899999999999999999999987     67899999997653    234566779999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+.+..|+||||++|++|.+++.......++....                            ..++.||+.||+|||+
T Consensus        78 ~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~----------------------------~~i~~~i~~~l~~lH~  129 (288)
T 3kfa_A           78 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL----------------------------LYMATQISSAMEYLEK  129 (288)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHH----------------------------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999998754443433322                            3678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||++.......                                            
T Consensus       130 ~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~--------------------------------------------  165 (288)
T 3kfa_A          130 KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--------------------------------------------  165 (288)
T ss_dssp             HTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS--------------------------------------------
T ss_pred             CCccCCCCCcceEEEcCCCCEEEccCccceeccCCc--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       166 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p  212 (288)
T 3kfa_A          166 ---------------------------------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP  212 (288)
T ss_dssp             ---------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ---------------------------------cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                                             001122357889999999998899999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+.+.......+.........  ..      .+..+.+||.+||..||.+||++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~l~~li~~~l~~dp~~Rps~~  260 (288)
T 3kfa_A          213 YPGIDLSQVYELLEKDYRMERP--EG------CPEKVYELMRACWQWNPSDRPSFA  260 (288)
T ss_dssp             STTCCGGGHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCHHHHHHHHhccCCCCCC--CC------CCHHHHHHHHHHhCCChhhCcCHH
Confidence            9988877776666554222111  11      122589999999999999999997

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.6e-45  Score=379.63  Aligned_cols=248  Identities=23%  Similarity=0.317  Sum_probs=202.4

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccce
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTL  154 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l  154 (517)
                      ....+.+..++|++++.||+|+||.||+|++.+       +.||||+++...     ..+.+.+|+.+|++++||||+++
T Consensus       184 ~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-------~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~  251 (450)
T 1k9a_A          184 YRSGWALNMKELKLLQTIGKGEFGDVMLGDYRG-------NKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQL  251 (450)
T ss_dssp             HHTTCBCCGGGEEEEEEEEECSSEEEEEEEETT-------EEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCE
T ss_pred             cccccccChHHeEEEeeecCcCCeeEEEEEecC-------CeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEE
Confidence            345677888999999999999999999998753       689999997652     34567789999999999999999


Q ss_pred             eeeeecCc-eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          155 YAEFEASH-YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       155 ~~~~~~~~-~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      ++++.... .+|+|||||++|+|.+++.......++...                            +..++.||+.||+
T Consensus       252 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~----------------------------~~~~~~qi~~~l~  303 (450)
T 1k9a_A          252 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC----------------------------LLKFSLDVCEAME  303 (450)
T ss_dssp             EEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHH----------------------------HHHHHHHHHHHHH
T ss_pred             EEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHH----------------------------HHHHHHHHHHHHH
Confidence            99976554 799999999999999999875332222222                            2367899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++||+||||||+|||++.++.+||+|||+++....                                          
T Consensus       304 ~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~------------------------------------------  341 (450)
T 1k9a_A          304 YLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS------------------------------------------  341 (450)
T ss_dssp             HHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-------------------------------------------
T ss_pred             HHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc------------------------------------------
Confidence            99999999999999999999999999999999842210                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-  392 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-  392 (517)
                                                             ......+++.|+|||++.+..++.++|||||||++|||++ 
T Consensus       342 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~  382 (450)
T 1k9a_A          342 ---------------------------------------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  382 (450)
T ss_dssp             --------------------------------------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------------------------------cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                   0011247889999999999999999999999999999998 


Q ss_pred             CCCCCCCCChHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          393 GTTPFKGENNEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |..||.+.+..+....+..+.. ..|.   .      .+..+.+||.+||+.||++|||+.
T Consensus       383 g~~P~~~~~~~~~~~~i~~~~~~~~p~---~------~~~~l~~li~~cl~~dp~~Rpt~~  434 (450)
T 1k9a_A          383 GRVPYPRIPLKDVVPRVEKGYKMDAPD---G------CPPAVYDVMKNCWHLDAATRPTFL  434 (450)
T ss_dssp             TCCSSTTSCTTTHHHHHHTTCCCCCCT---T------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCCCHHHHHHHHHcCCCCCCCC---c------CCHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999887777777765532 1121   1      123589999999999999999997

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.5e-45  Score=361.62  Aligned_cols=253  Identities=25%  Similarity=0.282  Sum_probs=191.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++.+.||+|+||.||+|++..     +++.||||++.............+.+|+.+++.++||||+++++++..+
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~  106 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTV-----RERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID  106 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcC-----CCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC
Confidence            45899999999999999999999876     6789999999765433334456778899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||++|++|.+++....  .++...                            +..++.||+.||+|||++||+
T Consensus       107 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~i~  156 (309)
T 2h34_A          107 GQLYVDMRLINGVDLAAMLRRQG--PLAPPR----------------------------AVAIVRQIGSALDAAHAAGAT  156 (309)
T ss_dssp             TEEEEEEECCCCEEHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEEEecCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHCcCC
Confidence            99999999999999999987642  222222                            236789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||++.......                                                
T Consensus       157 H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~------------------------------------------------  188 (309)
T 2h34_A          157 HRDVKPENILVSADDFAYLVDFGIASATTDEK------------------------------------------------  188 (309)
T ss_dssp             CSCCCGGGEEECTTSCEEECSCCC--------------------------------------------------------
T ss_pred             cCCCChHHEEEcCCCCEEEecCccCccccccc------------------------------------------------
Confidence            99999999999999999999999984322100                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   ........||+.|+|||++.+..++.++|||||||++|+|++|..||.+..
T Consensus       189 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  239 (309)
T 2h34_A          189 -----------------------------LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ  239 (309)
T ss_dssp             -------------------------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH
T ss_pred             -----------------------------cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch
Confidence                                         001123468999999999999889999999999999999999999999876


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCccccc-CCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI-GSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~-t~~  452 (517)
                      .......+... ...+.....     ..+.++.+||.+||+.||++|| ++.
T Consensus       240 ~~~~~~~~~~~-~~~~~~~~~-----~~~~~l~~li~~~l~~dP~~Rp~s~~  285 (309)
T 2h34_A          240 LSVMGAHINQA-IPRPSTVRP-----GIPVAFDAVIARGMAKNPEDRYVTCG  285 (309)
T ss_dssp             HHHHHHHHHSC-CCCGGGTST-----TCCTHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             HHHHHHHhccC-CCCccccCC-----CCCHHHHHHHHHhccCCHHHHHHhHH
Confidence            65444434332 222111111     1122589999999999999999 553

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.6e-45  Score=365.49  Aligned_cols=279  Identities=19%  Similarity=0.245  Sum_probs=206.7

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .+..++|++++.||+|+||.||+|++.......+++.||||++.....  ......+.+|+.++..+ +||||+++++++
T Consensus        23 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  100 (316)
T 2xir_A           23 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGAC  100 (316)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC--cHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence            456789999999999999999999976543334678999999976432  23345677899999999 799999999998


Q ss_pred             ecC-ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          159 EAS-HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       159 ~~~-~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      ... ..+|+||||++||+|.+++..............              ............+..++.||+.||.|||+
T Consensus       101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~qi~~al~~lH~  166 (316)
T 2xir_A          101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAP--------------EDLYKDFLTLEHLICYSFQVAKGMEFLAS  166 (316)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC---------------------CTTCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccc--------------hhhhccccCHHHHHHHHHHHHHHHHHHHh
Confidence            765 459999999999999999987543211110000              00001112233445789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       167 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------  203 (316)
T 2xir_A          167 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD-------------------------------------------  203 (316)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTT-------------------------------------------
T ss_pred             CCcccccCccceEEECCCCCEEECCCccccccccCcc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       204 ---------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p  250 (316)
T 2xir_A          204 ---------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP  250 (316)
T ss_dssp             ---------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ---------------------------------ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCC
Confidence                                             001123457899999999999899999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+......+..........+... ..      ..++.+||.+||+.||.+||++.    |+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~li~~~l~~dp~~Rps~~----ell~~  304 (316)
T 2xir_A          251 YPGVKIDEEFCRRLKEGTRMRAPD-YT------TPEMYQTMLDCWHGEPSQRPTFS----ELVEH  304 (316)
T ss_dssp             STTCCCSHHHHHHHHHTCCCCCCT-TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CcccchhHHHHHHhccCccCCCCC-CC------CHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            988765444433332221111111 11      12489999999999999999997    77765

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.7e-45  Score=366.19  Aligned_cols=260  Identities=20%  Similarity=0.233  Sum_probs=197.1

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|++...... ....||+|.+....  .......+.+|+.++++++||||+++++++..
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   88 (327)
T 3poz_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEK-VKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECC-----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEES
T ss_pred             cCHHHcccceEEeeCCCeEEEEEEEcCCCce-EEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec
Confidence            4457899999999999999999998753211 22346888886442  22345677889999999999999999999987


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +. .++||||+++|+|.+++.... ..++...                            +..|+.||+.||+|||++||
T Consensus        89 ~~-~~~v~e~~~~g~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~LH~~~i  138 (327)
T 3poz_A           89 ST-VQLITQLMPFGCLLDYVREHK-DNIGSQY----------------------------LLNWCVQIAKGMNYLEDRRL  138 (327)
T ss_dssp             SS-EEEEEECCTTCBHHHHHHHST-TSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             CC-eEEEEEecCCCcHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHhhCCe
Confidence            54 789999999999999987643 2222222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       139 vH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~----------------------------------------------  172 (327)
T 3poz_A          139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK----------------------------------------------  172 (327)
T ss_dssp             CCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC----------------------------------------------
T ss_pred             eCCCCChheEEECCCCCEEEccCcceeEccCCcc----------------------------------------------
Confidence            9999999999999999999999999854321100                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       173 ------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  222 (327)
T 3poz_A          173 ------------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  222 (327)
T ss_dssp             -------------------------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ------------------------------cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccC
Confidence                                          001122357889999999999999999999999999999999 9999998


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ....+....+...... +... .      ...++.+||.+||+.||.+||++.    |++++
T Consensus       223 ~~~~~~~~~~~~~~~~-~~~~-~------~~~~~~~li~~~l~~~p~~Rps~~----ell~~  272 (327)
T 3poz_A          223 IPASEISSILEKGERL-PQPP-I------CTIDVYMIMVKCWMIDADSRPKFR----ELIIE  272 (327)
T ss_dssp             CCGGGHHHHHHTTCCC-CCCT-T------BCHHHHHHHHHHTCSCGGGSCCHH----HHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCCc-c------CCHHHHHHHHHHcCCChhhCCCHH----HHHHH
Confidence            8877766665554321 1111 1      122589999999999999999997    66654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=380.58  Aligned_cols=263  Identities=25%  Similarity=0.324  Sum_probs=194.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~  159 (517)
                      +...+|.+.+.||+|+||+||.....      +++.||||++....      ...+.+|+.+|+.+ +|||||++++++.
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~~~------~~~~vAvK~~~~~~------~~~~~~E~~~l~~l~~HpnIv~l~~~~~   88 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRGMF------DNRDVAVKRILPEC------FSFADREVQLLRESDEHPNVIRYFCTEK   88 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEES------SSSEEEEEEECTTT------EEECHHHHHHHHHSCCCTTBCCEEEEEE
T ss_pred             EccEEEecCCeeecCcCEEEEEEEEe------CCeEEEEEEECHHH------HHHHHHHHHHHHhccCCCCcCeEEEEEe
Confidence            44457999999999999997643322      46889999986532      23345699999999 7999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +....|||||||. |+|.+++...... .....                            ...++.||+.||+|||++|
T Consensus        89 ~~~~~~lv~E~~~-g~L~~~l~~~~~~-~~~~~----------------------------~~~i~~qi~~aL~~LH~~~  138 (432)
T 3p23_A           89 DRQFQYIAIELCA-ATLQEYVEQKDFA-HLGLE----------------------------PITLLQQTTSGLAHLHSLN  138 (432)
T ss_dssp             ETTEEEEEEECCS-EEHHHHHHSSSCC-CCSSC----------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEECCC-CCHHHHHHhcCCC-ccchh----------------------------HHHHHHHHHHHHHHHHHCc
Confidence            9999999999995 6999998765321 11111                            1267899999999999999


Q ss_pred             ceeccCCCCceEEcc---C--CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          240 IVYRDLKPENVLVRE---D--GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       240 iiHrDLKp~NILl~~---~--~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      |+||||||+|||++.   +  ..+||+|||+++.......                                        
T Consensus       139 ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~----------------------------------------  178 (432)
T 3p23_A          139 IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH----------------------------------------  178 (432)
T ss_dssp             CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---------------------------------------------
T ss_pred             CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCc----------------------------------------
Confidence            999999999999953   2  3588999999854331100                                        


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~ell  391 (517)
                                                         ........+||+.|+|||++.+   ..++.++|||||||++|||+
T Consensus       179 -----------------------------------~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ell  223 (432)
T 3p23_A          179 -----------------------------------SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVI  223 (432)
T ss_dssp             ------------------------------------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHH
Confidence                                               0011234579999999999984   45788999999999999999


Q ss_pred             h-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          392 Y-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       392 t-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      + |..||...........+  ...........    ......+.+||.+||+.||.+||++.    |+++||||.+++|.
T Consensus       224 t~g~~pf~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~Rps~~----evl~hp~f~~~~~~  293 (432)
T 3p23_A          224 SEGSHPFGKSLQRQANILL--GACSLDCLHPE----KHEDVIARELIEKMIAMDPQKRPSAK----HVLKHPFFWSLEKQ  293 (432)
T ss_dssp             TTSCBTTBSTTTHHHHHHT--TCCCCTTSCTT----CHHHHHHHHHHHHHSCSSGGGSCCHH----HHHTSTTTCCHHHH
T ss_pred             cCCCCCcchhhHHHHHHHh--ccCCccccCcc----ccccHHHHHHHHHHHhCCHhhCCCHH----HHHhCccccChHHH
Confidence            9 99999765544433222  22111111111    12233578999999999999999998    99999999998883

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.8e-45  Score=355.33  Aligned_cols=252  Identities=18%  Similarity=0.278  Sum_probs=202.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|++.       ++.||||++...... ......+.+|+.+++.++||||+++++++
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~-------~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   76 (271)
T 3kmu_A            5 SGIDFKQLNFLTKLNENHSGELWKGRWQ-------GNDIVVKVLKVRDWS-TRKSRDFNEECPRLRIFSHPNVLPVLGAC   76 (271)
T ss_dssp             CCCCGGGCEEEEEEEEETTEEEEEEEET-------TEEEEEEEECCTTCC-HHHHHHHHHHGGGGCCCSCTTEECEEEEE
T ss_pred             CCCCHHHhHHHHHhcCCCcceEEEEEEC-------CeeEEEEEecccccC-HHHHHHHHHHHHHHHhcCCCchhheEEEE
Confidence            4567789999999999999999999975       367999998754221 13345677899999999999999999999


Q ss_pred             ecC--ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          159 EAS--HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       159 ~~~--~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .+.  +..|+||||++||+|.+++.......++....                            ..++.||+.||+|||
T Consensus        77 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~~l~~lH  128 (271)
T 3kmu_A           77 QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQA----------------------------VKFALDMARGMAFLH  128 (271)
T ss_dssp             CTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHH----------------------------HHHHHHHHHHHHHHT
T ss_pred             ccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHH----------------------------HHHHHHHHHHHHHHh
Confidence            877  78999999999999999998754323333322                            367899999999999


Q ss_pred             hcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          237 MMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       237 ~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ++|  |+||||||+|||++.++.++|+|||++....                                            
T Consensus       129 ~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~--------------------------------------------  164 (271)
T 3kmu_A          129 TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ--------------------------------------------  164 (271)
T ss_dssp             TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS--------------------------------------------
T ss_pred             cCCCceecCCCccceEEEcCCcceeEEeccceeeec--------------------------------------------
Confidence            999  9999999999999999999999988762110                                            


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCc---cchHHHHHHHHHHHh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGS---AVDWWTLGVFLYEML  391 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~---~~DiWSlGvil~ell  391 (517)
                                                             .....||+.|+|||++.+..++.   ++|||||||++|||+
T Consensus       165 ---------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~  205 (271)
T 3kmu_A          165 ---------------------------------------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELV  205 (271)
T ss_dssp             ---------------------------------------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHH
Confidence                                                   12236899999999998865544   799999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       392 tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +|..||.+.+.......+.......+... ..      +.++.+||.+||+.||++||++.    |+++
T Consensus       206 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~li~~~l~~~p~~Rps~~----~il~  263 (271)
T 3kmu_A          206 TREVPFADLSNMEIGMKVALEGLRPTIPP-GI------SPHVSKLMKICMNEDPAKRPKFD----MIVP  263 (271)
T ss_dssp             HCSCTTTTSCHHHHHHHHHHSCCCCCCCT-TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             hCCCCccccChHHHHHHHHhcCCCCCCCC-CC------CHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            99999999888877777665443322111 11      22589999999999999999997    6654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.7e-45  Score=387.86  Aligned_cols=253  Identities=20%  Similarity=0.256  Sum_probs=205.5

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++.+.||+|+||.||+|+++.     ++..||||++....    .....+.+|+.+|++++|||||+++++
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~  284 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKK-----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV  284 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGG-----GTEEEEEEECCSSS----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcC-----CCeEEEEEEecCcc----cchHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            355667889999999999999999999986     57889999997643    234567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.....+|||||||++|+|.+++.......+....                            +..++.||+.||+|||+
T Consensus       285 ~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~----------------------------~~~i~~qi~~~L~~LH~  336 (495)
T 1opk_A          285 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVV----------------------------LLYMATQISSAMEYLEK  336 (495)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999875433333222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++......                                            
T Consensus       337 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--------------------------------------------  372 (495)
T 1opk_A          337 KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT--------------------------------------------  372 (495)
T ss_dssp             TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC--------------------------------------------
T ss_pred             CCcccCCCChhhEEECCCCcEEEeecccceeccCCc--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........+++.|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       373 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p  419 (495)
T 1opk_A          373 ---------------------------------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP  419 (495)
T ss_dssp             ---------------------------------EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ---------------------------------eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCC
Confidence                                             001122346789999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+.+..+....+..... .+... .      .+..+.+||.+||+.||++||++.
T Consensus       420 ~~~~~~~~~~~~~~~~~~-~~~~~-~------~~~~l~~li~~cl~~dP~~RPs~~  467 (495)
T 1opk_A          420 YPGIDLSQVYELLEKDYR-MERPE-G------CPEKVYELMRACWQWNPSDRPSFA  467 (495)
T ss_dssp             STTCCGGGHHHHHHTTCC-CCCCT-T------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCHHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHcCcChhHCcCHH
Confidence            999887777666655422 11111 1      123589999999999999999997

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=9e-46  Score=369.58  Aligned_cols=280  Identities=18%  Similarity=0.210  Sum_probs=208.5

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+..++|++++.||+|+||.||+|++.......+++.||||++.....  .....++.+|+.+++.++||||+++++++.
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  103 (327)
T 2yfx_A           26 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS--EQDELDFLMEALIISKFNHQNIVRCIGVSL  103 (327)
T ss_dssp             BCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc--hhhHHHHHHHHHHHhhCCCCCCCeEEEEEc
Confidence            345678999999999999999999965422223678899999864321  123446777999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .....|+||||++||+|.+++..........                       .......+..++.||+.||.|||++|
T Consensus       104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~-----------------------~~~~~~~~~~i~~qi~~al~~LH~~~  160 (327)
T 2yfx_A          104 QSLPRFILMELMAGGDLKSFLRETRPRPSQP-----------------------SSLAMLDLLHVARDIACGCQYLEENH  160 (327)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTSCCSSST-----------------------TSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEecCCCCcHHHHHHhhccccccc-----------------------ccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999998753211100                       01112233478899999999999999


Q ss_pred             ceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          240 IVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       240 iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      |+||||||+|||++.   ++.+||+|||+++.......                                          
T Consensus       161 i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~------------------------------------------  198 (327)
T 2yfx_A          161 FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASY------------------------------------------  198 (327)
T ss_dssp             CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC---------------------------------------------
T ss_pred             eecCcCCHhHEEEecCCCcceEEECccccccccccccc------------------------------------------
Confidence            999999999999984   44699999999843221000                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~  395 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       199 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  244 (327)
T 2yfx_A          199 ----------------------------------YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM  244 (327)
T ss_dssp             -------------------------------------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------------------------cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCC
Confidence                                              011123468999999999998889999999999999999998 999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      ||.+....+....+.......+..  ..      ...+.+||.+||+.||.+||++.    ++++|.|+-.-+....
T Consensus       245 p~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~l~~li~~~l~~dp~~Rps~~----~ll~~l~~~~~~~~~~  309 (327)
T 2yfx_A          245 PYPSKSNQEVLEFVTSGGRMDPPK--NC------PGPVYRIMTQCWQHQPEDRPNFA----IILERIEYCTQDPDVI  309 (327)
T ss_dssp             SSTTCCHHHHHHHHHTTCCCCCCT--TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHHHHHCHHHH
T ss_pred             CCCCcCHHHHHHHHhcCCCCCCCC--CC------CHHHHHHHHHHhcCChhhCcCHH----HHHHHHHHHhcCHHHh
Confidence            999988887777776654322211  11      22589999999999999999998    9999988654333333

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=7.6e-45  Score=363.99  Aligned_cols=279  Identities=19%  Similarity=0.235  Sum_probs=210.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +.+..++|++++.||+|+||.||+|++.....  ...+..||||++.....  ......+.+|+.+++.+ +||||++++
T Consensus        30 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~  107 (334)
T 2pvf_A           30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLL  107 (334)
T ss_dssp             TBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCc--HHHHHHHHHHHHHHHHhhcCCCEeeEE
Confidence            45667899999999999999999999864221  12567899999975422  23456677899999999 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++...+.+|+||||+++|+|.+++..............              ............+..++.||+.||+||
T Consensus       108 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~qi~~aL~~L  173 (334)
T 2pvf_A          108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDI--------------NRVPEEQMTFKDLVSCTYQLARGMEYL  173 (334)
T ss_dssp             EEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC----------------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCceEEEEECCCCCcHHHHHHHhccccccccccc--------------cccccccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987542211110000              001111223344567899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++.......                                         
T Consensus       174 H~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------  212 (334)
T 2pvf_A          174 ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDY-----------------------------------------  212 (334)
T ss_dssp             HHTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSS-----------------------------------------
T ss_pred             HhCCeeCCCCccceEEEcCCCCEEEcccccccccccccc-----------------------------------------
Confidence            999999999999999999999999999999854321100                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........||+.|+|||++.+..++.++|||||||++|+|++ |.
T Consensus       213 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~  257 (334)
T 2pvf_A          213 -----------------------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG  257 (334)
T ss_dssp             -----------------------------------EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCC
Confidence                                               001123357889999999998889999999999999999999 99


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+....+....+.........  ...      ..++.+||.+||..||.+||++.    |++++
T Consensus       258 ~p~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~li~~~l~~dp~~Rps~~----ell~~  312 (334)
T 2pvf_A          258 SPYPGIPVEELFKLLKEGHRMDKP--ANC------TNELYMMMRDCWHAVPSQRPTFK----QLVED  312 (334)
T ss_dssp             CSSTTCCHHHHHHHHHHTCCCCCC--TTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCcCcCCHHHHHHHHhcCCCCCCC--ccC------CHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            999998887777766655322111  111      22589999999999999999997    66654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=2.4e-45  Score=382.96  Aligned_cols=251  Identities=18%  Similarity=0.290  Sum_probs=202.1

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+.+..++|++.+.||+|+||.||+|+++.      +..||||+++...    ...+.+.+|+.+|+.++||||++++++
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~------~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~l~~~  251 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNK------HTKVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAV  251 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETT------TEEEEEEEECTTS----BCHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECC------ccEEEEEEecCCC----ccHHHHHHHHHHHhhCCCCCEeeEEEE
Confidence            456778899999999999999999999863      4679999997643    234567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +. .+.+|+|||||++|+|.+++.......++..                            .+..++.||+.||+|||+
T Consensus       252 ~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~----------------------------~~~~~~~qi~~~l~~LH~  302 (454)
T 1qcf_A          252 VT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLP----------------------------KLIDFSAQIAEGMAFIEQ  302 (454)
T ss_dssp             EC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             Ee-CCccEEEEeecCCCcHHHHHHhccCCCCCHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence            87 5678999999999999999875421122221                            223678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++......                                            
T Consensus       303 ~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~--------------------------------------------  338 (454)
T 1qcf_A          303 RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE--------------------------------------------  338 (454)
T ss_dssp             TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH--------------------------------------------
T ss_pred             CCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........+|+.|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       339 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P  385 (454)
T 1qcf_A          339 ---------------------------------YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP  385 (454)
T ss_dssp             ---------------------------------HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ---------------------------------eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCC
Confidence                                             001122347889999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+.+..+....+..+.. .+... .      .+.++.+||.+||+.||++|||+.
T Consensus       386 ~~~~~~~~~~~~i~~~~~-~~~~~-~------~~~~l~~li~~cl~~dp~~RPt~~  433 (454)
T 1qcf_A          386 YPGMSNPEVIRALERGYR-MPRPE-N------CPEELYNIMMRCWKNRPEERPTFE  433 (454)
T ss_dssp             STTCCHHHHHHHHHHTCC-CCCCT-T------SCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCHHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHccCChhHCcCHH
Confidence            999988888777765432 22111 1      123589999999999999999996

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2.7e-45  Score=372.65  Aligned_cols=258  Identities=21%  Similarity=0.264  Sum_probs=194.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|+++...  ..+..||||+++....  ......+.+|+.+|++++||||+++++++
T Consensus        40 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~--~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~  115 (373)
T 2qol_A           40 KELDATNISIDKVVGAGEFGEVCSGRLKLPS--KKEISVAIKTLKVGYT--EKQRRDFLGEASIMGQFDHPNIIRLEGVV  115 (373)
T ss_dssp             CBCCGGGCCCCEEEEECSSSEEEEC-CBCTT--SCBCCEEEEECCTTCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhcCHhhceeeeEEeeCCCeEEEEEEEecCC--CCceeEEEEEecCccC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            4566789999999999999999999876321  1467899999975421  23345677899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus       116 ~~~~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~  166 (373)
T 2qol_A          116 TKSKPVMIVTEYMENGSLDSFLRKHD-AQFTVIQ----------------------------LVGMLRGIASGMKYLSDM  166 (373)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTT-TCSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             eeCCceEEEEeCCCCCcHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999987642 2222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++........                                           
T Consensus       167 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-------------------------------------------  203 (373)
T 2qol_A          167 GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA-------------------------------------------  203 (373)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCC-------------------------------------------------------
T ss_pred             CeeCCCCCcceEEEcCCCCEEECcCccccccccCCcc-------------------------------------------
Confidence            9999999999999999999999999998543211000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||
T Consensus       204 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~  251 (373)
T 2qol_A          204 --------------------------------AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPY  251 (373)
T ss_dssp             ------------------------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTT
T ss_pred             --------------------------------ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCC
Confidence                                            000112246788999999999899999999999999999997 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+....+....+..... .+... .      .+..+.+||.+||+.||.+||++.
T Consensus       252 ~~~~~~~~~~~i~~~~~-~~~~~-~------~~~~l~~li~~cl~~dp~~RPs~~  298 (373)
T 2qol_A          252 WEMSNQDVIKAVDEGYR-LPPPM-D------CPAALYQLMLDCWQKDRNNRPKFE  298 (373)
T ss_dssp             TTCCHHHHHHHHHTTEE-CCCCT-T------CBHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCHHHHHHHHHcCCC-CCCCc-c------ccHHHHHHHHHHhCcChhhCcCHH
Confidence            99888877777665422 11111 1      123589999999999999999997

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.8e-45  Score=351.65  Aligned_cols=255  Identities=22%  Similarity=0.277  Sum_probs=205.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++.+.||+|+||.||+|++..      ++.||+|++.....    ..+.+.+|+.+++.++||||+++++++
T Consensus         3 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~------~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~   72 (267)
T 3t9t_A            3 WVIDPSELTFVQEIGSGQFGLVHLGYWLN------KDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVC   72 (267)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEETT------TEEEEEEEECTTTB----CHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eEEchhheeeeeEecCCCceeEEEEEecC------CCeEEEEEccccCC----CHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            44567899999999999999999999863      46799999976532    224567799999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+..|+||||+++++|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~  123 (267)
T 3t9t_A           73 LEQAPICLVTEFMEHGCLSDYLRTQR-GLFAAET----------------------------LLGMCLDVCEGMAYLEEA  123 (267)
T ss_dssp             CSSSSCEEEECCCTTCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEEeCCCCCcHHHHHhhCc-ccCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999987642 1222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+||+++.++.+||+|||++.......                                             
T Consensus       124 ~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~---------------------------------------------  158 (267)
T 3t9t_A          124 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ---------------------------------------------  158 (267)
T ss_dssp             TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH---------------------------------------------
T ss_pred             CcccCCCchheEEECCCCCEEEccccccccccccc---------------------------------------------
Confidence            99999999999999999999999999984322100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       159 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~  206 (267)
T 3t9t_A          159 --------------------------------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY  206 (267)
T ss_dssp             --------------------------------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCC
Confidence                                            001123357889999999998889999999999999999999 89999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+....+....+...........  .      ...+.+||.+||+.||++||++.    +++++
T Consensus       207 ~~~~~~~~~~~i~~~~~~~~~~~--~------~~~l~~li~~~l~~~p~~Rps~~----~ll~~  258 (267)
T 3t9t_A          207 ENRSNSEVVEDISTGFRLYKPRL--A------STHVYQIMNHCWRERPEDRPAFS----RLLRQ  258 (267)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCCTT--S------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCHHHHHHHHhcCCcCCCCcc--C------cHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            99888888877776533222111  1      12489999999999999999997    66653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=5.5e-45  Score=358.54  Aligned_cols=278  Identities=18%  Similarity=0.205  Sum_probs=206.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +.+..++|++++.||+|+||.||+|++..     +++.||||++...     .....+.+|+.+++.+ +|+||++++++
T Consensus         5 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~-----~~~~~~~~e~~~~~~l~~~~~i~~~~~~   74 (298)
T 1csn_A            5 NNVVGVHYKVGRRIGEGSFGVIFEGTNLL-----NNQQVAIKFEPRR-----SDAPQLRDEYRTYKLLAGCTGIPNVYYF   74 (298)
T ss_dssp             -CEETTTEEEEEEEEECSSCEEEEEEETT-----TTEEEEEEEEECC-----TTSCCHHHHHHHHHHTTTCTTCCCEEEE
T ss_pred             CcccccceEEEEEEeecCCEEEEEEEECC-----CCcEEEEEEeccC-----CccHHHHHHHHHHHHHhcCCCCCeEEee
Confidence            34556889999999999999999999876     6789999998654     2334566799999999 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +......|+||||+ +++|.+++.... ..++...                            +..++.||+.||+|||+
T Consensus        75 ~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~lH~  124 (298)
T 1csn_A           75 GQEGLHNVLVIDLL-GPSLEDLLDLCG-RKFSVKT----------------------------VAMAAKQMLARVQSIHE  124 (298)
T ss_dssp             EEETTEEEEEEECC-CCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHT
T ss_pred             cCCCceeEEEEEec-CCCHHHHHHHhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            99999999999999 999999997642 2233322                            23788999999999999


Q ss_pred             cCceeccCCCCceEEccCCc-----EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGH-----IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~-----vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      +||+||||||+|||++.++.     +||+|||+++........                                     
T Consensus       125 ~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------  167 (298)
T 1csn_A          125 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK-------------------------------------  167 (298)
T ss_dssp             TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC-------------------------------------
T ss_pred             CCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccc-------------------------------------
Confidence            99999999999999987776     999999998544321100                                     


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                        ............||+.|+|||++.+..++.++|||||||++|||++
T Consensus       168 ----------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  213 (298)
T 1csn_A          168 ----------------------------------QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLR  213 (298)
T ss_dssp             ----------------------------------CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------ccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHc
Confidence                                              0000112345579999999999999999999999999999999999


Q ss_pred             CCCCCCCCC---hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChH---Hh---hcCCC
Q 010140          393 GTTPFKGEN---NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV---EI---KRHEF  463 (517)
Q Consensus       393 G~~Pf~~~~---~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~---el---l~hp~  463 (517)
                      |+.||.+..   ....+..+.......+.....    ...+.++.+||.+||+.||++||++.+..+   ++   +....
T Consensus       214 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~  289 (298)
T 1csn_A          214 GSLPWQGLKAATNKQKYERIGEKKQSTPLRELC----AGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTE  289 (298)
T ss_dssp             SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHT----TTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCCcchhhccccHHHHHHHHhhccCccHHHHH----hhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCC
Confidence            999998743   334444443321111100000    011235899999999999999999862211   11   23344


Q ss_pred             cCCCCccc
Q 010140          464 FKGINWAL  471 (517)
Q Consensus       464 f~~~~~~~  471 (517)
                      ....||+.
T Consensus       290 ~~~~dw~~  297 (298)
T 1csn_A          290 DENFDWNL  297 (298)
T ss_dssp             CSCCGGGC
T ss_pred             CCccccCC
Confidence            55566654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=6.5e-45  Score=363.37  Aligned_cols=271  Identities=21%  Similarity=0.256  Sum_probs=203.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCce--eeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF--YAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~--vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +.+..++|++.+.||+|+||.||+|+++.     ++..  +|+|.+.....  ......+.+|+.+++++ +||||++++
T Consensus        20 p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~~~v~iK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~   92 (327)
T 1fvr_A           20 PVLDWNDIKFQDVIGEGNFGQVLKARIKK-----DGLRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHPNIINLL   92 (327)
T ss_dssp             SBCCGGGCEEEEEEECGGGCEEEEEEEEE-----TTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEE
T ss_pred             ccccHHHccceeeeecCCCceEEEEEEcc-----CCcccceeeeeeccccc--hHHHHHHHHHHHHHHhccCCCchhhhc
Confidence            34566899999999999999999999886     4444  59998875322  23456678899999999 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++.+.+.+|+||||+++|+|.+++.......  ......+            ............++.++.||+.||+||
T Consensus        93 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~i~~qi~~aL~~L  158 (327)
T 1fvr_A           93 GACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE--TDPAFAI------------ANSTASTLSSQQLLHFAADVARGMDYL  158 (327)
T ss_dssp             EEEEETTEEEEEECCCTTCBHHHHHHTTCHHH--HCHHHHH------------HTTBSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeCCceEEEEecCCCCCHHHHHHhccccc--ccccccc------------cccccccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987643100  0000000            000011122334457899999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++....                                            
T Consensus       159 H~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~--------------------------------------------  194 (327)
T 1fvr_A          159 SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------------------------------------------  194 (327)
T ss_dssp             HHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCE--------------------------------------------
T ss_pred             HhCCccCCCCccceEEEcCCCeEEEcccCcCccccc--------------------------------------------
Confidence            999999999999999999999999999999842110                                            


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                         ........+++.|+|||++.+..++.++|||||||++|+|++ |.
T Consensus       195 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~  239 (327)
T 1fvr_A          195 -----------------------------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGG  239 (327)
T ss_dssp             -----------------------------------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCC
Confidence                                               001122357889999999998889999999999999999998 99


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+.+..+....+.........  .      ....++.+||.+||+.||.+||++.    |+++|
T Consensus       240 ~pf~~~~~~~~~~~~~~~~~~~~~--~------~~~~~l~~li~~~l~~dp~~Rps~~----ell~~  294 (327)
T 1fvr_A          240 TPYCGMTCAELYEKLPQGYRLEKP--L------NCDDEVYDLMRQCWREKPYERPSFA----QILVS  294 (327)
T ss_dssp             CTTTTCCHHHHHHHGGGTCCCCCC--T------TBCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCcHHHHHHHhhcCCCCCCC--C------CCCHHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            999998888777776654221111  1      1123589999999999999999997    66654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=6.7e-45  Score=361.33  Aligned_cols=262  Identities=24%  Similarity=0.339  Sum_probs=189.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||.||+|+++.     +++.||||++...... ......+..+..+++.++||||+++++++.+
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   95 (318)
T 2dyl_A           22 AEINDLENLGEMGSGTCGQVWKMRFRK-----TGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTFIT   95 (318)
T ss_dssp             CCGGGEEEEEEC------CEEEEEETT-----TCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred             hhhccccccceeeecCCeeEEEEEEec-----CCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEEec
Confidence            456899999999999999999999986     6789999999754222 1222333445567888899999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc-C
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM-G  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~  239 (517)
                      .+..|+||||+ ++.+..+.... ...++..                            .++.++.||+.||.|||++ |
T Consensus        96 ~~~~~lv~e~~-~~~~~~l~~~~-~~~~~~~----------------------------~~~~~~~~i~~~l~~lH~~~~  145 (318)
T 2dyl_A           96 NTDVFIAMELM-GTCAEKLKKRM-QGPIPER----------------------------ILGKMTVAIVKALYYLKEKHG  145 (318)
T ss_dssp             SSEEEEEECCC-SEEHHHHHHHH-TSCCCHH----------------------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEecc-CCcHHHHHHHh-ccCCCHH----------------------------HHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999 65665554432 1222222                            2246789999999999996 9


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||++......                                               
T Consensus       146 i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~-----------------------------------------------  178 (318)
T 2dyl_A          146 VIHRDVKPSNILLDERGQIKLCDFGISGRLVDD-----------------------------------------------  178 (318)
T ss_dssp             CCCCCCCGGGEEECTTSCEEECCCTTC-----------------------------------------------------
T ss_pred             EEeCCCCHHHEEECCCCCEEEEECCCchhccCC-----------------------------------------------
Confidence            999999999999999999999999998432210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHHHhhCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                      .......||+.|+|||++.     +..++.++|||||||++|+|++|.
T Consensus       179 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~  226 (318)
T 2dyl_A          179 --------------------------------KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQ  226 (318)
T ss_dssp             ----------------------------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------------------ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCC
Confidence                                            0112236899999999995     456889999999999999999999


Q ss_pred             CCCCCC-ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          395 TPFKGE-NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       395 ~Pf~~~-~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      .||... ...+.+..+...............      .++.+||.+||+.||.+||++.    |+++||||+..
T Consensus       227 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~----~ll~h~~~~~~  290 (318)
T 2dyl_A          227 FPYKNCKTDFEVLTKVLQEEPPLLPGHMGFS------GDFQSFVKDCLTKDHRKRPKYN----KLLEHSFIKRY  290 (318)
T ss_dssp             CTTTTCCSHHHHHHHHHHSCCCCCCSSSCCC------HHHHHHHHHHTCSCTTTSCCHH----HHTTSHHHHHH
T ss_pred             CCCCCCCccHHHHHHHhccCCCCCCccCCCC------HHHHHHHHHHccCChhHCcCHH----HHhhCHHHHhc
Confidence            999874 445556666554433222111112      2489999999999999999998    99999999754

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=6.3e-45  Score=357.93  Aligned_cols=258  Identities=21%  Similarity=0.283  Sum_probs=192.4

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|+...... .+++.||||++....   ......+.+|+.+|+.++||||+++++++
T Consensus         5 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   80 (295)
T 3ugc_A            5 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQD-NTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVC   80 (295)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEECTTCS-SCCEEEEEEEESCCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CcCCHHHhhhhheeeccCCEEEEEEEEecccC-CCCcEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            34567899999999999999999998642111 267899999987543   23345677899999999999999999998


Q ss_pred             ec--CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          159 EA--SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       159 ~~--~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ..  ...+|+||||+++|+|.+++.... ..++..                            .+..++.||+.||+|||
T Consensus        81 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~~~~qi~~~l~~lH  131 (295)
T 3ugc_A           81 YSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHI----------------------------KLLQYTSQICKGMEYLG  131 (295)
T ss_dssp             CHHHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCceEEEEEeCCCCCHHHHHHhcc-cccCHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            54  456899999999999999987642 112222                            22367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++........                                         
T Consensus       132 ~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----------------------------------------  170 (295)
T 3ugc_A          132 TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF-----------------------------------------  170 (295)
T ss_dssp             HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------------------------------------------
T ss_pred             cCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcce-----------------------------------------
Confidence            999999999999999999999999999998543211100                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       171 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~  216 (295)
T 3ugc_A          171 ----------------------------------FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEK  216 (295)
T ss_dssp             ---------------------------------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ----------------------------------eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccc
Confidence                                              0011223577889999999999999999999999999999999999


Q ss_pred             CCCCChH----------------HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNE----------------KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~----------------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |......                .....+... ...+... .      .+.++.+||.+||+.||++||++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~------~~~~l~~li~~~l~~dp~~Rps~~  280 (295)
T 3ugc_A          217 SKSPPAEFMRMIGNDKQGQMIVFHLIELLKNN-GRLPRPD-G------CPDEIYMIMTECWNNNVNQRPSFR  280 (295)
T ss_dssp             TCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTT-CCCCCCT-T------CCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             cCCChHHHHhhhcCccccchhHHHHHHHHhcc-CcCCCCc-C------cCHHHHHHHHHHcCCChhhCCCHH
Confidence            8653211                111222222 1222111 1      123589999999999999999997

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=9.2e-46  Score=368.45  Aligned_cols=258  Identities=25%  Similarity=0.343  Sum_probs=203.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcC--CCCccc
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLD--HPFLPT  153 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~--HpnIv~  153 (517)
                      +....++|++++.||+|+||.||+|++..     +++.||||++........   ....++.+|+.+++++.  ||||++
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~  112 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFGSVYSGIRVS-----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIR  112 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSCEEEEEEETT-----TTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCC
T ss_pred             cCCccCceEEEEEEeeCCCeEEEEEEECC-----CCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceE
Confidence            34556889999999999999999999876     678999999976532110   11234556999999996  599999


Q ss_pred             eeeeeecCceeEEEEEecCC-CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          154 LYAEFEASHYSCLVMEYCPG-GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       154 l~~~~~~~~~~~lV~E~~~g-g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      +++++...+..++|||++.+ ++|.+++...  ..+....                            ++.++.||+.||
T Consensus       113 ~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~~L  162 (320)
T 3a99_A          113 LLDWFERPDSFVLILERPEPVQDLFDFITER--GALQEEL----------------------------ARSFFWQVLEAV  162 (320)
T ss_dssp             EEEEEECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHH----------------------------HHHHHHHHHHHH
T ss_pred             EEEEEecCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHH
Confidence            99999999999999999976 8999988763  2222222                            236789999999


Q ss_pred             HHHHhcCceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      +|||++||+||||||+|||++ .++.+||+|||+++....                                        
T Consensus       163 ~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~----------------------------------------  202 (320)
T 3a99_A          163 RHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD----------------------------------------  202 (320)
T ss_dssp             HHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCS----------------------------------------
T ss_pred             HHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccc----------------------------------------
Confidence            999999999999999999999 789999999999843221                                        


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEM  390 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~el  390 (517)
                                                              .......||+.|+|||++.+..+ +.++|||||||++|||
T Consensus       203 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el  242 (320)
T 3a99_A          203 ----------------------------------------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM  242 (320)
T ss_dssp             ----------------------------------------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHH
Confidence                                                    01123469999999999987765 7889999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcc
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      ++|..||....      .+......++..   .      ..++.+||.+||+.||++||++.    |+++||||+++.+.
T Consensus       243 ~~g~~pf~~~~------~~~~~~~~~~~~---~------~~~~~~li~~~l~~dp~~Rps~~----~ll~hp~~~~~~~~  303 (320)
T 3a99_A          243 VCGDIPFEHDE------EIIRGQVFFRQR---V------SSECQHLIRWCLALRPSDRPTFE----EIQNHPWMQDVLLP  303 (320)
T ss_dssp             HHSSCSCCSHH------HHHHCCCCCSSC---C------CHHHHHHHHHHTCSSGGGSCCHH----HHHTSGGGSSCCCH
T ss_pred             HHCCCCCCChh------hhhccccccccc---C------CHHHHHHHHHHccCChhhCcCHH----HHhcCHhhcCccCc
Confidence            99999997532      223333222221   1      12589999999999999999998    99999999987654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.3e-44  Score=353.24  Aligned_cols=260  Identities=23%  Similarity=0.275  Sum_probs=201.8

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|++.....  .+..||+|++.....  .....++.+|+.+++.++||||+++++++
T Consensus         7 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   82 (281)
T 3cc6_A            7 YGIAREDVVLNRILGEGFFGEVYEGVYTNHKG--EKINVAVKTCKKDCT--LDNKEKFMSEAVIMKNLDHPHIVKLIGII   82 (281)
T ss_dssp             CSCCGGGEEEEEEEEECSSSEEEEEEEECTTC--CEEEEEEEECCTTSC--HHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred             ceecccceEEEEEEEecCCeeEEEeEEcCCCC--CcceEEEEecccccC--chHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            44667899999999999999999999875322  456799999976521  23346677899999999999999999998


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .++ ..|+||||+++++|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        83 ~~~-~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~  132 (281)
T 3cc6_A           83 EEE-PTWIIMELYPYGELGHYLERNK-NSLKVLT----------------------------LVLYSLQICKAMAYLESI  132 (281)
T ss_dssp             CSS-SCEEEEECCTTCBHHHHHHHHT-TTCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             cCC-CCEEEEecCCCCCHHHHHHhcc-ccCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            754 5689999999999999987642 1222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.......                                             
T Consensus       133 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------  167 (281)
T 3cc6_A          133 NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED---------------------------------------------  167 (281)
T ss_dssp             TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-------------------------------------------------
T ss_pred             CcccCCCccceEEECCCCcEEeCccCCCccccccc---------------------------------------------
Confidence            99999999999999999999999999984332100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |+.||
T Consensus       168 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~  215 (281)
T 3cc6_A          168 --------------------------------YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPF  215 (281)
T ss_dssp             -------------------------------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             --------------------------------ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCc
Confidence                                            001122357889999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ......+....+.........  ...      ...+.+||.+||..||++||++.    |++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~--~~~------~~~l~~li~~~l~~~p~~Rps~~----ell~~  267 (281)
T 3cc6_A          216 FWLENKDVIGVLEKGDRLPKP--DLC------PPVLYTLMTRCWDYDPSDRPRFT----ELVCS  267 (281)
T ss_dssp             TTSCGGGHHHHHHHTCCCCCC--TTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             ccCChHHHHHHHhcCCCCCCC--CCC------CHHHHHHHHHHccCCchhCcCHH----HHHHH
Confidence            987777666666554322111  111      22489999999999999999997    66654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.8e-44  Score=374.11  Aligned_cols=266  Identities=23%  Similarity=0.311  Sum_probs=193.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~  162 (517)
                      +.|.+.+.||+|+||+||.+...      +++.||||++..+.      ...+.+|+.+|+.+ +|||||++++++.+++
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~------~g~~vAvK~~~~~~------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~   82 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSF------QGRPVAVKRMLIDF------CDIALMEIKLLTESDDHPNVIRYYCSETTDR   82 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEES------SSSEEEEEEEEGGG------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSS
T ss_pred             heeeccCeEeeCCCeEEEEEEEE------CCeEEEEEEEcHHH------HHHHHHHHHHHHhccCCCCcCeEEEEEecCC
Confidence            45667899999999999875433      56899999987643      23455699999886 8999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||. |+|.+++............                       .....+..++.||+.||+|||++||+|
T Consensus        83 ~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~-----------------------~~~~~~~~i~~qi~~aL~~LH~~~ivH  138 (434)
T 2rio_A           83 FLYIALELCN-LNLQDLVESKNVSDENLKL-----------------------QKEYNPISLLRQIASGVAHLHSLKIIH  138 (434)
T ss_dssp             EEEEEECCCS-EEHHHHHHTC-----------------------------------CCHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEecCC-CCHHHHHhccCCCchhhhh-----------------------ccchhHHHHHHHHHHHHHHHHHCCccc
Confidence            9999999995 6999999765321111000                       011122468899999999999999999


Q ss_pred             ccCCCCceEEccC-------------CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          243 RDLKPENVLVRED-------------GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       243 rDLKp~NILl~~~-------------~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      |||||+|||++.+             +.+||+|||+++........                                  
T Consensus       139 rDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~----------------------------------  184 (434)
T 2rio_A          139 RDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSS----------------------------------  184 (434)
T ss_dssp             CCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------------------------------
T ss_pred             cCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCcc----------------------------------
Confidence            9999999999754             48999999998543321100                                  


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-------CCCCccchHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-------QGHGSAVDWWT  382 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-------~~~~~~~DiWS  382 (517)
                                                              ........+||+.|+|||++.+       ..++.++||||
T Consensus       185 ----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwS  224 (434)
T 2rio_A          185 ----------------------------------------FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFS  224 (434)
T ss_dssp             --------------------------------------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHH
T ss_pred             ----------------------------------------ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHh
Confidence                                                    0001234579999999999976       56899999999


Q ss_pred             HHHHHHHHhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          383 LGVFLYEMLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       383 lGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |||++|||++ |..||.+....+  ..+.......+.......  .....++.+||.+||+.||.+||++.    |+++|
T Consensus       225 lG~il~ellt~g~~Pf~~~~~~~--~~i~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rps~~----eil~h  296 (434)
T 2rio_A          225 MGCVFYYILSKGKHPFGDKYSRE--SNIIRGIFSLDEMKCLHD--RSLIAEATDLISQMIDHDPLKRPTAM----KVLRH  296 (434)
T ss_dssp             HHHHHHHHHTTSCCTTCSTTTHH--HHHHHTCCCCCCCTTCCC--HHHHHHHHHHHHHHTCSSGGGSCCHH----HHHTS
T ss_pred             HHHHHHHHHhCCCCCCCCchhhH--HHHhcCCCCccccccccc--ccchHHHHHHHHHHhhCChhhCCCHH----HHHhC
Confidence            9999999999 999998765443  344444443333222111  12345689999999999999999998    99999


Q ss_pred             CCcCCC
Q 010140          462 EFFKGI  467 (517)
Q Consensus       462 p~f~~~  467 (517)
                      |||.+.
T Consensus       297 p~f~~~  302 (434)
T 2rio_A          297 PLFWPK  302 (434)
T ss_dssp             GGGSCH
T ss_pred             CccCCc
Confidence            999754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.8e-45  Score=366.47  Aligned_cols=266  Identities=21%  Similarity=0.236  Sum_probs=200.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|+++      +++.||||++.....   .....+.+|+.+++.++||||+++++++..
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  106 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLR------DGAKVALKRRTPESS---QGIEEFETEIETLSFCRHPHLVSLIGFCDE  106 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECT------TCCEEEEEECCSCCS---SHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred             HHHhccCccceeecCCCeeEEEEEEC------CCCEEEEEEecccCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence            45689999999999999999999864      467899999865421   234567779999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++|+|.+++............                          ..+..++.||+.||+|||++||
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~--------------------------~~~~~i~~~i~~~l~~lH~~~i  160 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSW--------------------------EQRLEICIGAARGLHYLHTRAI  160 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCH--------------------------HHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCeEEEEEEcCCCCcHHHHHhccCCCccccCH--------------------------HHHHHHHHHHHHHHHHhcCCCe
Confidence            99999999999999999887654322211211                          1224688999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       161 vH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------  194 (321)
T 2qkw_B          161 IHRDVKSINILLDENFVPKITDFGISKKGTELDQ----------------------------------------------  194 (321)
T ss_dssp             ECSCCCSTTEEECTTCCEEECCCTTCEECSSSSC----------------------------------------------
T ss_pred             ecCCCCHHHEEECCCCCEEEeecccccccccccc----------------------------------------------
Confidence            9999999999999999999999999843221000                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus       195 ------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~  244 (321)
T 2qkw_B          195 ------------------------------THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQS  244 (321)
T ss_dssp             ------------------------------CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCS
T ss_pred             ------------------------------cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCccccc
Confidence                                          00112346899999999999888999999999999999999999999865


Q ss_pred             ChHHHH------H-HHhcCCCC-CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          401 NNEKTL------I-NILKKPLT-FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       401 ~~~~~~------~-~i~~~~~~-~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ...+..      . ........ .................+.+||.+||+.||++||++.    |+++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~----ell~~  309 (321)
T 2qkw_B          245 LPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMG----DVLWK  309 (321)
T ss_dssp             SSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHH----HHHHH
Confidence            432211      1 11111110 0000111111123455789999999999999999997    77765

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=5.9e-45  Score=361.31  Aligned_cols=267  Identities=28%  Similarity=0.367  Sum_probs=201.0

Q ss_pred             HhhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC--CCCcc
Q 010140           75 RRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD--HPFLP  152 (517)
Q Consensus        75 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~--HpnIv  152 (517)
                      ..+...+..++|++++.||+|+||.||+|++.      .++.||||++...... ......+.+|+.+++.++  ||||+
T Consensus        19 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~~~iv   91 (313)
T 3cek_A           19 YFQSMSVKGRIYSILKQIGSGGSSKVFQVLNE------KKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKII   91 (313)
T ss_dssp             -CCEEEETTEEEEEEEEEECCSSEEEEEEECT------TCCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHHGGGCTTBC
T ss_pred             CeeeeeeccceEEEEEEecCCCCEEEEEEEcC------CCcEEEEEEecccccc-ccchHHHHHHHHHHHhccccCCceE
Confidence            33444566678999999999999999999875      3678999998643211 234566778999999996  59999


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ++++++...+..|+|||+ .+++|.+++....  .+...                            .++.++.||+.||
T Consensus        92 ~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~~~--~~~~~----------------------------~~~~i~~qi~~aL  140 (313)
T 3cek_A           92 RLYDYEITDQYIYMVMEC-GNIDLNSWLKKKK--SIDPW----------------------------ERKSYWKNMLEAV  140 (313)
T ss_dssp             CEEEEEECSSEEEEEECC-CSEEHHHHHHHCS--SCCHH----------------------------HHHHHHHHHHHHH
T ss_pred             EEEEEeecCCEEEEEEec-CCCcHHHHHHhcC--CCCHH----------------------------HHHHHHHHHHHHH
Confidence            999999999999999994 5889999987642  22222                            2236789999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      .|||++||+||||||+|||++ ++.+||+|||+++.......                                      
T Consensus       141 ~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~--------------------------------------  181 (313)
T 3cek_A          141 HTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT--------------------------------------  181 (313)
T ss_dssp             HHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------------------------------------
T ss_pred             HHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCccc--------------------------------------
Confidence            999999999999999999996 58999999999854321000                                      


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-----------CCCCccchHH
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-----------QGHGSAVDWW  381 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-----------~~~~~~~DiW  381 (517)
                                                            ........||+.|+|||++.+           ..++.++|||
T Consensus       182 --------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~  223 (313)
T 3cek_A          182 --------------------------------------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVW  223 (313)
T ss_dssp             ----------------------------------------------CCGGGCCHHHHTTCC----------CCCHHHHHH
T ss_pred             --------------------------------------cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHH
Confidence                                                  001123469999999999976           4688899999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          382 TLGVFLYEMLYGTTPFKGENN-EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       382 SlGvil~elltG~~Pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ||||++|+|++|..||..... ...+..+........... ...      .++.+||.+||+.||.+||++.    |+++
T Consensus       224 slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~l~~li~~~l~~dp~~Rps~~----ell~  292 (313)
T 3cek_A          224 SLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPD-IPE------KDLQDVLKCCLKRDPKQRISIP----ELLA  292 (313)
T ss_dssp             HHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCC-CSC------HHHHHHHHHHTCSSTTTSCCHH----HHHT
T ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcc-cch------HHHHHHHHHHccCCcccCcCHH----HHhc
Confidence            999999999999999987644 344444444332221111 111      2489999999999999999998    9999


Q ss_pred             CCCcCCC
Q 010140          461 HEFFKGI  467 (517)
Q Consensus       461 hp~f~~~  467 (517)
                      ||||+..
T Consensus       293 h~~~~~~  299 (313)
T 3cek_A          293 HPYVQIQ  299 (313)
T ss_dssp             SHHHHCC
T ss_pred             CccccCC
Confidence            9999853

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-44  Score=359.84  Aligned_cols=259  Identities=20%  Similarity=0.224  Sum_probs=199.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.+.||+|+||.||+|+++.... ..+..||||++.....  ......+.+|+.+++.++||||+++++++
T Consensus        39 ~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  115 (333)
T 1mqb_A           39 TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSG-KKEVPVAIKTLKAGYT--EKQRVDFLGEAGIMGQFSHHNIIRLEGVI  115 (333)
T ss_dssp             CBCCTTTEEEEEEEEECSSSEEEEEEEEC----CCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ccCChHHhhcccEEecCCCeEEEEEEEecCCC-CccccEEEEEcCCCCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            45667899999999999999999999875321 1345799999975421  13345677899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ...+..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus       116 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~  166 (333)
T 1mqb_A          116 SKYKPMMIITEYMENGALDKFLREKD-GEFSVLQ----------------------------LVGMLRGIAAGMKYLANM  166 (333)
T ss_dssp             CSSSSEEEEEECCTTEEHHHHHHHTT-TCSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999987642 2222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++........                                           
T Consensus       167 ~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------  203 (333)
T 1mqb_A          167 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-------------------------------------------  203 (333)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCCCC-----------------------------------------------------
T ss_pred             CeeCCCCChheEEECCCCcEEECCCCcchhhcccccc-------------------------------------------
Confidence            9999999999999999999999999998543211000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       204 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf  251 (333)
T 1mqb_A          204 --------------------------------TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY  251 (333)
T ss_dssp             ---------------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCc
Confidence                                            000112346889999999999899999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+....+....+..... .+.. ..      .+..+.+||.+||+.||.+||++.
T Consensus       252 ~~~~~~~~~~~~~~~~~-~~~~-~~------~~~~l~~li~~~l~~~p~~Rps~~  298 (333)
T 1mqb_A          252 WELSNHEVMKAINDGFR-LPTP-MD------CPSAIYQLMMQCWQQERARRPKFA  298 (333)
T ss_dssp             TTCCHHHHHHHHHTTCC-CCCC-TT------CBHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             ccCCHHHHHHHHHCCCc-CCCc-cc------CCHHHHHHHHHHcCCChhhCcCHH
Confidence            99888887777765532 1111 11      123589999999999999999987

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2e-44  Score=353.80  Aligned_cols=261  Identities=21%  Similarity=0.229  Sum_probs=200.2

Q ss_pred             HHhhcCCcCCCCceEEe-eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcc
Q 010140           74 LRRAQGRVGLDHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        74 ~~~~~~~~~~~~y~i~~-~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv  152 (517)
                      +...+..+..++|++.+ .||+|+||.||+|.+...   ..++.||||++...... ......+.+|+.+++.++||||+
T Consensus         6 i~~~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~---~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~   81 (291)
T 1xbb_A            6 IRPKEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMK---KVVKTVAVKILKNEAND-PALKDELLAEANVMQQLDNPYIV   81 (291)
T ss_dssp             -----CBCCGGGEEEEEEEEEECSSEEEEEEEEECS---SSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBC
T ss_pred             cCcceeeecchhhhhccCccccccCeeeEeeeecCC---CceeeEEEEeecccccC-HHHHHHHHHHHHHHHhCCCCCEE
Confidence            34445566778999999 999999999999976532   15688999999765322 23356778899999999999999


Q ss_pred             ceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          153 TLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       153 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      ++++++ ..+..|+||||+++++|.+++....  .++...                            +..++.||+.||
T Consensus        82 ~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~i~~qi~~~l  130 (291)
T 1xbb_A           82 RMIGIC-EAESWMLVMEMAELGPLNKYLQQNR--HVKDKN----------------------------IIELVHQVSMGM  130 (291)
T ss_dssp             CEEEEE-ESSSEEEEEECCTTEEHHHHHHHCT--TCCHHH----------------------------HHHHHHHHHHHH
T ss_pred             EEEEEE-CCCCcEEEEEeCCCCCHHHHHHhCc--CCCHHH----------------------------HHHHHHHHHHHH
Confidence            999999 5677899999999999999987642  232222                            236789999999


Q ss_pred             HHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      +|||++||+||||||+|||++.++.+||+|||++.........                                     
T Consensus       131 ~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------  173 (291)
T 1xbb_A          131 KYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY-------------------------------------  173 (291)
T ss_dssp             HHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSE-------------------------------------
T ss_pred             HHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCc-------------------------------------
Confidence            9999999999999999999999999999999998543211100                                     


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                            ........||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       174 --------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  215 (291)
T 1xbb_A          174 --------------------------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS  215 (291)
T ss_dssp             --------------------------------------EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------------------ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHh
Confidence                                                  001122347889999999998889999999999999999999


Q ss_pred             -CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          393 -GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       393 -G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                       |..||.+....+....+.......  .....      +..+.+||.+||+.||.+||++.
T Consensus       216 ~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~l~~li~~~l~~dp~~Rps~~  268 (291)
T 1xbb_A          216 YGQKPYRGMKGSEVTAMLEKGERMG--CPAGC------PREMYDLMNLCWTYDVENRPGFA  268 (291)
T ss_dssp             TTCCSSTTCCHHHHHHHHHTTCCCC--CCTTC------CHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHcCCCCC--CCCCC------CHHHHHHHHHHcCCChhhCcCHH
Confidence             999999988877777766543221  11111      22589999999999999999997

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.2e-44  Score=354.95  Aligned_cols=262  Identities=23%  Similarity=0.319  Sum_probs=197.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|++.....  ....||||++.............+.+|+.+++.++||||+++++++..
T Consensus        15 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   92 (291)
T 1u46_A           15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSG--KTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT   92 (291)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTS--CEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cchhHeeeeeeecCCCceeEEEEEeccCCC--ceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc
Confidence            455789999999999999999998764211  234699999987654444556778889999999999999999999987


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .. .++||||+++|+|.+++.... ..++..                            .+..++.||+.||.|||++||
T Consensus        93 ~~-~~~v~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~~~~~i~~~l~~lH~~~i  142 (291)
T 1u46_A           93 PP-MKMVTELAPLGSLLDRLRKHQ-GHFLLG----------------------------TLSRYAVQVAEGMGYLESKRF  142 (291)
T ss_dssp             SS-CEEEEECCTTCBHHHHHHHHG-GGSCHH----------------------------HHHHHHHHHHHHHHHHHHTTE
T ss_pred             CC-ceeeEecccCCCHHHHHHhcc-CCcCHH----------------------------HHHHHHHHHHHHHHHHHhCCc
Confidence            65 899999999999999887532 112222                            224678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++.........                                             
T Consensus       143 ~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~---------------------------------------------  177 (291)
T 1u46_A          143 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH---------------------------------------------  177 (291)
T ss_dssp             ECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE---------------------------------------------
T ss_pred             ccCCCchheEEEcCCCCEEEccccccccccccccc---------------------------------------------
Confidence            99999999999999999999999998543211100                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+
T Consensus       178 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  227 (291)
T 1u46_A          178 ------------------------------YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG  227 (291)
T ss_dssp             ------------------------------EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ------------------------------hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence                                          001123357889999999998889999999999999999999 9999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+..+....+.......+....       .+.++.+||.+||..||.+||++.    ++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~li~~~l~~~p~~Rps~~----~l~~  277 (291)
T 1u46_A          228 LNGSQILHKIDKEGERLPRPED-------CPQDIYNVMVQCWAHKPEDRPTFV----ALRD  277 (291)
T ss_dssp             CCHHHHHHHHHTSCCCCCCCTT-------CCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCHHHHHHHHHccCCCCCCCcC-------cCHHHHHHHHHHccCCcccCcCHH----HHHH
Confidence            9888888888766544433221       123589999999999999999997    7765

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=354.11  Aligned_cols=246  Identities=23%  Similarity=0.381  Sum_probs=187.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|++.       ++.||||++....     ....+.+|+.+|++++||||+++++++.+
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~~-------~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   72 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKWR-------AKDVAIKQIESES-----ERKAFIVELRQLSRVNHPNIVKLYGACLN   72 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEET-------TEEEEEEECSSTT-----HHHHHHHHHHHHHHCCCTTBCCEEEBCTT
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEEC-------CeeEEEEEecChh-----HHHHHHHHHHHHhcCCCCCcCeEEEEEcC
Confidence            45678999999999999999999875       3679999997542     33566779999999999999999998874


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh---
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM---  237 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~---  237 (517)
                        ..|+||||++||+|.+++.....  .....                         ...+..++.||+.||+|||+   
T Consensus        73 --~~~lv~e~~~~~~L~~~l~~~~~--~~~~~-------------------------~~~~~~~~~qi~~~l~~LH~~~~  123 (307)
T 2eva_A           73 --PVCLVMEYAEGGSLYNVLHGAEP--LPYYT-------------------------AAHAMSWCLQCSQGVAYLHSMQP  123 (307)
T ss_dssp             --TTEEEEECCTTCBHHHHHHCSSS--EECCC-------------------------HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             --CcEEEEEcCCCCCHHHHHhccCC--CCccC-------------------------HHHHHHHHHHHHHHHHHHHhCCC
Confidence              48999999999999999876421  11101                         11223678999999999999   


Q ss_pred             cCceeccCCCCceEEccCCc-EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGH-IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~-vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +||+||||||+|||++.++. +||+|||++.....                                             
T Consensus       124 ~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~---------------------------------------------  158 (307)
T 2eva_A          124 KALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT---------------------------------------------  158 (307)
T ss_dssp             SCCCCCCCSGGGEEEETTTTEEEECCCCC---------------------------------------------------
T ss_pred             CCeecCCCChhHEEEeCCCCEEEEccccccccccc---------------------------------------------
Confidence            89999999999999998886 79999999832210                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                          ......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus       159 ------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  202 (307)
T 2eva_A          159 ------------------------------------HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP  202 (307)
T ss_dssp             ------------------------------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCT
T ss_pred             ------------------------------------ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                                                01123589999999999998999999999999999999999999


Q ss_pred             CCCCCh--HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENN--EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~--~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |.....  ......+.....  +......      +..+.+||.+||+.||.+||++.    ++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~----ell~  256 (307)
T 2eva_A          203 FDEIGGPAFRIMWAVHNGTR--PPLIKNL------PKPIESLMTRCWSKDPSQRPSME----EIVK  256 (307)
T ss_dssp             TTTTCSSHHHHHHHHHTTCC--CCCBTTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             chhhCccHHHHHHHHhcCCC--CCccccc------CHHHHHHHHHHhcCChhhCcCHH----HHHH
Confidence            986533  233333333221  1111111      22489999999999999999997    5554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.4e-44  Score=352.45  Aligned_cols=251  Identities=21%  Similarity=0.290  Sum_probs=199.7

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+.+..++|++++.||+|+||.||+|++..      +..||+|++.....    ....+.+|+.+|+.++||||++++++
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~   76 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYNG------HTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAV   76 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETT------TEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEcC------CcEEEEEEecCCcc----cHHHHHHHHHHHHhCCCcCcceEEEE
Confidence            456777899999999999999999998753      46799999975431    23456779999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+ +..|+||||+++++|.+++.......++..                            .+..++.||+.||+|||+
T Consensus        77 ~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~----------------------------~~~~i~~qi~~~l~~lH~  127 (279)
T 1qpc_A           77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTIN----------------------------KLLDMAAQIAEGMAFIEE  127 (279)
T ss_dssp             ECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CCcEEEEecCCCCCHHHHHhcCCCCCCCHH----------------------------HHHHHHHHHHHHHHHHHH
Confidence            874 568999999999999998764321122222                            224778999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||++.......                                            
T Consensus       128 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------  163 (279)
T 1qpc_A          128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE--------------------------------------------  163 (279)
T ss_dssp             TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC--------------------------------------------
T ss_pred             CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc--------------------------------------------
Confidence            999999999999999999999999999985432110                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       164 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p  210 (279)
T 1qpc_A          164 ---------------------------------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP  210 (279)
T ss_dssp             ---------------------------------EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------------------------cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCC
Confidence                                             001122357889999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+....+....+.........  ..      .+.++.+||.+||..||++||++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~l~~li~~~l~~~p~~Rps~~  258 (279)
T 1qpc_A          211 YPGMTNPEVIQNLERGYRMVRP--DN------CPEELYQLMRLCWKERPEDRPTFD  258 (279)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCC--TT------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CcccCHHHHHHHHhcccCCCCc--cc------ccHHHHHHHHHHhccChhhCCCHH
Confidence            9998888877777654322111  11      122589999999999999999986

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.4e-44  Score=352.25  Aligned_cols=253  Identities=23%  Similarity=0.349  Sum_probs=194.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH----HHHHHHhHHHHHHHHHHhcCCCCcccee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL----AIRKKLHRADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~----~~~~~~~~~~~E~~il~~l~HpnIv~l~  155 (517)
                      .+..++|++.+.||+|+||.||+|++..     +++.||+|++.....    ........+.+|+.+++.++||||++++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   89 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLVK-----DKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY   89 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEETT-----TCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             hhhhccceehhccccCCceeEEEEEEcC-----CceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence            4566899999999999999999999986     678999999854321    1112236778899999999999999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++.+..  ++||||+++|+|.+++.... ..+....                            +..++.||+.||+||
T Consensus        90 ~~~~~~~--~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~~l~~~l~~l  138 (287)
T 4f0f_A           90 GLMHNPP--RMVMEFVPCGDLYHRLLDKA-HPIKWSV----------------------------KLRLMLDIALGIEYM  138 (287)
T ss_dssp             EEETTTT--EEEEECCTTCBHHHHHHCTT-SCCCHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             eeecCCC--eEEEEecCCCCHHHHHhccc-CCccHHH----------------------------HHHHHHHHHHHHHHH
Confidence            9997665  69999999999998886542 2222222                            236789999999999


Q ss_pred             HhcC--ceeccCCCCceEEccCCc-----EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          236 HMMG--IVYRDLKPENVLVREDGH-----IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       236 H~~~--iiHrDLKp~NILl~~~~~-----vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      |++|  |+||||||+|||++.++.     +||+|||+++....                                     
T Consensus       139 H~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~-------------------------------------  181 (287)
T 4f0f_A          139 QNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH-------------------------------------  181 (287)
T ss_dssp             HTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS-------------------------------------
T ss_pred             HhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccc-------------------------------------
Confidence            9999  999999999999988776     99999999842110                                     


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc--CCCCCccchHHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS--GQGHGSAVDWWTLGVF  386 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~--~~~~~~~~DiWSlGvi  386 (517)
                                                                  ......||+.|+|||++.  ...++.++|||||||+
T Consensus       182 --------------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~  217 (287)
T 4f0f_A          182 --------------------------------------------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMI  217 (287)
T ss_dssp             --------------------------------------------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHH
T ss_pred             --------------------------------------------cccccCCCccccCchhhccCCCCcCchhhHHHHHHH
Confidence                                                        112346999999999994  4457899999999999


Q ss_pred             HHHHhhCCCCCCCCChHHH--HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          387 LYEMLYGTTPFKGENNEKT--LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       387 l~elltG~~Pf~~~~~~~~--~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +|+|++|..||........  ...+........ .....      +..+.+||.+||+.||.+||++.    |+++
T Consensus       218 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~l~~li~~~l~~dp~~Rps~~----~ll~  282 (287)
T 4f0f_A          218 LYTILTGEGPFDEYSYGKIKFINMIREEGLRPT-IPEDC------PPRLRNVIELCWSGDPKKRPHFS----YIVK  282 (287)
T ss_dssp             HHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCC-CCTTS------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             HHHHHcCCCCCccccccHHHHHHHHhccCCCCC-CCccc------CHHHHHHHHHHhcCChhhCcCHH----HHHH
Confidence            9999999999987654333  333333322221 11111      22589999999999999999997    6654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4e-44  Score=352.60  Aligned_cols=257  Identities=18%  Similarity=0.208  Sum_probs=197.0

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee-e
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF-E  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~  159 (517)
                      ....+|++.+.||+|+||.||+|++.....  ....+|+|.+.....  ......+.+|+.++++++||||+++++++ .
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~~avk~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   97 (298)
T 3f66_A           22 PSSLIVHFNEVIGRGHFGCVYHGTLLDNDG--KKIHCAVKSLNRITD--IGEVSQFLTEGIIMKDFSHPNVLSLLGICLR   97 (298)
T ss_dssp             GGGEEEEEEEEEEEETTEEEEEEEEC-------CEEEEEEEETTCCS--HHHHHHHHHHHHHHHTCCCTTBCCCCEEECC
T ss_pred             ccceehhhcceeeecCCceEEEEEEecCCC--ceeEEEEEecccCCC--HHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc
Confidence            344679999999999999999999765321  345689999875321  23445677899999999999999999985 5


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      .++..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++|
T Consensus        98 ~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~ql~~~l~~lH~~~  148 (298)
T 3f66_A           98 SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKD----------------------------LIGFGLQVAKGMKYLASKK  148 (298)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHCTT-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEEeCCCCCCHHHHHHhcc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence            6678899999999999999986532 2222222                            2367899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |+||||||+|||++.++.+||+|||+++........                                            
T Consensus       149 i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~--------------------------------------------  184 (298)
T 3f66_A          149 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYY--------------------------------------------  184 (298)
T ss_dssp             CCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGC--------------------------------------------
T ss_pred             ccCCCCchheEEECCCCCEEECcccccccccccchh--------------------------------------------
Confidence            999999999999999999999999998543311100                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                    .........||+.|+|||++.+..++.++|||||||++|+|++ |.+||.
T Consensus       185 ------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  234 (298)
T 3f66_A          185 ------------------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  234 (298)
T ss_dssp             ------------------------------BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ------------------------------ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCc
Confidence                                          0011233468899999999999899999999999999999999 677888


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +.+..+....+............        +..+.+||.+||+.||.+||++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~li~~~l~~~p~~Rps~~  280 (298)
T 3f66_A          235 DVNTFDITVYLLQGRRLLQPEYC--------PDPLYEVMLKCWHPKAEMRPSFS  280 (298)
T ss_dssp             TSCTTTHHHHHHTTCCCCCCTTC--------CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCHHHHHHHHhcCCCCCCCccC--------CHHHHHHHHHHcCCChhhCcCHH
Confidence            87777777666665443322111        12489999999999999999997

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.7e-44  Score=357.44  Aligned_cols=261  Identities=26%  Similarity=0.310  Sum_probs=191.9

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|++..     +++.||||++.............+.+|+.+++.++||||+++++++..
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~  103 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLL-----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE  103 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETT-----TCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcC-----CCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc
Confidence            456789999999999999999999876     678999999875322222345667789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..|+||||+++|+|.+++...........                          ...+..++.||+.||.|||++||
T Consensus       104 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~--------------------------~~~~~~i~~qi~~~l~~LH~~~i  157 (310)
T 2wqm_A          104 DNELNIVLELADAGDLSRMIKHFKKQKRLIP--------------------------ERTVWKYFVQLCSALEHMHSRRV  157 (310)
T ss_dssp             TTEEEEEEECCCSCBHHHHHHHHHHTTCCCC--------------------------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEEecCCCCCHHHHHHHhcccccCCC--------------------------HHHHHHHHHHHHHHHHHHhhCCe
Confidence            9999999999999999998865321111111                          11224678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||++......                                                
T Consensus       158 ~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~------------------------------------------------  189 (310)
T 2wqm_A          158 MHRDIKPANVFITATGVVKLGDLGLGRFFSSK------------------------------------------------  189 (310)
T ss_dssp             CCCCCCGGGEEECTTSCEEECCC---------------------------------------------------------
T ss_pred             eCCCCcHHHEEEcCCCCEEEEeccceeeecCC------------------------------------------------
Confidence            99999999999999999999999998432210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       190 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  239 (310)
T 2wqm_A          190 ------------------------------TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  239 (310)
T ss_dssp             ---------------------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             ------------------------------CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence                                          00112346899999999999989999999999999999999999999765


Q ss_pred             Ch--HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          401 NN--EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       401 ~~--~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..  ......+......... ...      ...++.+||.+||..||.+||++.    +++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~-~~~------~~~~l~~li~~~l~~dp~~Rps~~----~il~~  291 (310)
T 2wqm_A          240 KMNLYSLCKKIEQCDYPPLP-SDH------YSEELRQLVNMCINPDPEKRPDVT----YVYDV  291 (310)
T ss_dssp             -CCHHHHHHHHHTTCSCCCC-TTT------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             chhHHHHHHHhhcccCCCCc-ccc------cCHHHHHHHHHHcCCChhhCCCHH----HHHHH
Confidence            32  3444444443322111 111      122589999999999999999997    66653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=5.8e-45  Score=363.41  Aligned_cols=268  Identities=23%  Similarity=0.275  Sum_probs=200.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|+..      +++.||||++......  .....+.+|+.+++.++||||+++++++..
T Consensus        27 ~~~~~y~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   98 (326)
T 3uim_A           27 VASDNFSNKNILGRGGFGKVYKGRLA------DGTLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMT   98 (326)
T ss_dssp             TTTTSSCSTTEEECCSSSEEEEECCS------SSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEECC
T ss_pred             HHhhccccceeEecCCCcEEEEEEec------CCCEEEEEEeccccCc--hHHHHHHHHHHHHHhccCCCccceEEEEec
Confidence            45689999999999999999999754      4678999999865432  223467789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc--
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM--  238 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~--  238 (517)
                      .+..|+||||+++|+|.+++.............                          .+..++.||+.||+|||++  
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~--------------------------~~~~i~~~i~~~l~~lH~~~~  152 (326)
T 3uim_A           99 PTERLLVYPYMANGSVASCLRERPESQPPLDWP--------------------------KRQRIALGSARGLAYLHDHCD  152 (326)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHH--------------------------HHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCceEEEEEeccCCCHHHHHHhccccCCCCCHH--------------------------HHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999998754333222222                          2236789999999999999  


Q ss_pred             -CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          239 -GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       239 -~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                       ||+||||||+|||++.++.+||+|||+++......                                            
T Consensus       153 ~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------  188 (326)
T 3uim_A          153 PKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD--------------------------------------------  188 (326)
T ss_dssp             SCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSS--------------------------------------------
T ss_pred             CCeEeCCCchhhEEECCCCCEEeccCccccccCccc--------------------------------------------
Confidence             99999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       ........||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       189 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  235 (326)
T 3uim_A          189 ---------------------------------THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAF  235 (326)
T ss_dssp             ---------------------------------SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSB
T ss_pred             ---------------------------------ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcc
Confidence                                             01122346999999999998888999999999999999999999999


Q ss_pred             CC----CChHHHHHHHhcCCCCC---C---CCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCC
Q 010140          398 KG----ENNEKTLINILKKPLTF---P---RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF  463 (517)
Q Consensus       398 ~~----~~~~~~~~~i~~~~~~~---p---~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~  463 (517)
                      ..    .................   .   ...............+.+||.+||+.||.+|||+.    |+++|-.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~----ell~~L~  307 (326)
T 3uim_A          236 DLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMS----EVVRMLE  307 (326)
T ss_dssp             CHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHH----HHHHHHH
T ss_pred             cccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHH----HHHHHhc
Confidence            62    11111111222211110   0   00001111123445799999999999999999997    7777643

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-44  Score=352.01  Aligned_cols=260  Identities=23%  Similarity=0.253  Sum_probs=203.3

Q ss_pred             CcCCCCceEEe-eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           80 RVGLDHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~-~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .+..++|.+.+ .||+|+||.||+|.++..   ..+..||||++.....  ......+.+|+.+++.++||||+++++++
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~---~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   79 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFGSVRQGVYRMR---KKQIDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVC   79 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC------CCEEEEEEEECSSCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccHHHhhhhhccccccCceeEEEeEeccC---CCcceEEEEecCCccc--hhHHHHHHHHHHHHHhCCCCCEeEEEEEe
Confidence            35567888887 999999999999987542   1457899999976421  23456677899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                       ..+..|+||||+++++|.+++.... ..++...                            +..++.||+.||.|||++
T Consensus        80 -~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~  129 (287)
T 1u59_A           80 -QAEALMLVMEMAGGGPLHKFLVGKR-EEIPVSN----------------------------VAELLHQVSMGMKYLEEK  129 (287)
T ss_dssp             -ESSSEEEEEECCTTEEHHHHHTTCT-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             -cCCCcEEEEEeCCCCCHHHHHHhCC-ccCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence             4567899999999999999886432 2233222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.........                                           
T Consensus       130 ~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------  166 (287)
T 1u59_A          130 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY-------------------------------------------  166 (287)
T ss_dssp             TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCE-------------------------------------------
T ss_pred             CEeeCCCchheEEEcCCCCEEECcccceeeeccCcce-------------------------------------------
Confidence            9999999999999999999999999998543211100                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       167 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  214 (287)
T 1u59_A          167 --------------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY  214 (287)
T ss_dssp             --------------------------------ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCc
Confidence                                            001123357899999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+....+....+........  ...      .+.++.+||.+||+.||.+||++.    ++++|
T Consensus       215 ~~~~~~~~~~~i~~~~~~~~--~~~------~~~~l~~li~~~l~~~p~~Rps~~----~l~~~  266 (287)
T 1u59_A          215 KKMKGPEVMAFIEQGKRMEC--PPE------CPPELYALMSDCWIYKWEDRPDFL----TVEQR  266 (287)
T ss_dssp             TTCCTHHHHHHHHTTCCCCC--CTT------CCHHHHHHHHHTTCSSGGGSCCHH----HHHHH
T ss_pred             ccCCHHHHHHHHhcCCcCCC--CCC------cCHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            99888887777766532211  111      123589999999999999999997    77765

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.6e-45  Score=365.13  Aligned_cols=268  Identities=22%  Similarity=0.268  Sum_probs=183.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHH-HHHhcCCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV-ILTMLDHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~  157 (517)
                      +.+..++|++++.||+|+||.||+|.++.     +++.||||++......  ....++..|+. +++.++||||++++++
T Consensus        17 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~~~~h~niv~~~~~   89 (327)
T 3aln_A           17 WDFTAEDLKDLGEIGRGAYGSVNKMVHKP-----SGQIMAVKRIRSTVDE--KEQKQLLMDLDVVMRSSDCPYIVQFYGA   89 (327)
T ss_dssp             ECCCSCSEEC-CEEEECSSEEEEEEEETT-----TTEEEEEEEEECCCCH--HHHHHHHHHHHHHHSSCCCTTBCCEEEE
T ss_pred             cccCHHHhhehheeccCCCEEEEEEEEcC-----CCCEEEEEEeecccCc--hHHHHHHHHHHHHHHcCCCCcEeeeeeE
Confidence            45667899999999999999999999876     6789999998653211  12233344555 7777899999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhC---CCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQ---PGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      +...+..|+||||++ |+|.+++...   ....++.                            ..+..++.|++.||.|
T Consensus        90 ~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~----------------------------~~~~~i~~~i~~~l~~  140 (327)
T 3aln_A           90 LFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPE----------------------------EILGKITLATVKALNH  140 (327)
T ss_dssp             EECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcH----------------------------HHHHHHHHHHHHHHHH
Confidence            999999999999996 4887776531   1122222                            2234778999999999


Q ss_pred             HHhc-CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          235 LHMM-GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       235 LH~~-~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      ||++ ||+||||||+|||++.++.+||+|||+++.....                                         
T Consensus       141 lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~-----------------------------------------  179 (327)
T 3aln_A          141 LKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS-----------------------------------------  179 (327)
T ss_dssp             HHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC---------------------------------------------
T ss_pred             HhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccc-----------------------------------------
Confidence            9999 9999999999999999999999999998433210                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh----cCCCCCccchHHHHHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI----SGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l----~~~~~~~~~DiWSlGvil~e  389 (517)
                                                            .......||+.|+|||++    .+..++.++|||||||++|+
T Consensus       180 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~  221 (327)
T 3aln_A          180 --------------------------------------IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYE  221 (327)
T ss_dssp             ----------------------------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred             --------------------------------------cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHH
Confidence                                                  001123689999999999    45568999999999999999


Q ss_pred             HhhCCCCCCCCChH-HHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          390 MLYGTTPFKGENNE-KTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       390 lltG~~Pf~~~~~~-~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      |++|..||.+.... +.+..+..... .++.....     .....+.+||.+||+.||.+||++.    |+++||||...
T Consensus       222 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~----ell~hp~~~~~  292 (327)
T 3aln_A          222 LATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEER-----EFSPSFINFVNLCLTKDESKRPKYK----ELLKHPFILMY  292 (327)
T ss_dssp             HHHSCCCSSCC-------CCCCCSCCCCCCCCSSC-----CCCHHHHHHHHHHTCSSGGGSCCHH----HHTTSHHHHHH
T ss_pred             HHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccc-----cCCHHHHHHHHHHhhCChhhCcCHH----HHHhChHHHHh
Confidence            99999999875432 22222222211 11111111     1223589999999999999999998    99999999865


Q ss_pred             Ccc
Q 010140          468 NWA  470 (517)
Q Consensus       468 ~~~  470 (517)
                      ++.
T Consensus       293 ~~~  295 (327)
T 3aln_A          293 EER  295 (327)
T ss_dssp             HHS
T ss_pred             Hhh
Confidence            544

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.1e-44  Score=353.30  Aligned_cols=263  Identities=22%  Similarity=0.350  Sum_probs=191.7

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcccee
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~  155 (517)
                      ...+++..++|++.++||+|+||.||+|++..        .||+|++...... ......+.+|+.+|+.++||||++++
T Consensus        16 ~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~--------~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (289)
T 3og7_A           16 ADDWEIPDGQITVGQRIGSGSFGTVYKGKWHG--------DVAVKMLNVTAPT-PQQLQAFKNEVGVLRKTRHVNILLFM   86 (289)
T ss_dssp             --CCBCCTTSCEEEEEEEECSSEEEEEEESSS--------EEEEEEESCSSCC-HHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             CCCCccCccceeeeeEecCCCCeEEEEEEEcC--------ceEEEEEeccCCC-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            34567888999999999999999999998653        4899998643211 23456677899999999999999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      ++. .....++|||||+|++|.+++.... ..++...                            +..++.||+.||+||
T Consensus        87 ~~~-~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~~L~~l  136 (289)
T 3og7_A           87 GYS-TAPQLAIVTQWCEGSSLYHHLHASE-TKFEMKK----------------------------LIDIARQTARGMDYL  136 (289)
T ss_dssp             EEE-CSSSCEEEEECCCEEEHHHHHTTC----CCHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             eec-cCCccEEEEEecCCCcHHHHHhhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHH
Confidence            965 5667899999999999999886532 2222222                            236789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++||+||||||+|||++.++.+||+|||+++.......                                         
T Consensus       137 H~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------  175 (289)
T 3og7_A          137 HAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG-----------------------------------------  175 (289)
T ss_dssp             HHTTCCCSCCCGGGEEEETTTEEEECCCC---------------------------------------------------
T ss_pred             HhCCcccccCccceEEECCCCCEEEccceeccccccccc-----------------------------------------
Confidence            999999999999999999999999999999843221000                                         


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc---CCCCCccchHHHHHHHHHHHhh
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS---GQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~---~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                         ........||+.|+|||++.   +..++.++|||||||++|+|++
T Consensus       176 -----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  220 (289)
T 3og7_A          176 -----------------------------------SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT  220 (289)
T ss_dssp             -------------------------------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHH
Confidence                                               01122346999999999997   5568889999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |..||.+....+.+..........+......   ...+..+.+||.+||+.||.+||++.    ++++
T Consensus       221 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rps~~----ell~  281 (289)
T 3og7_A          221 GQLPYSNINNRDQIIEMVGRGSLSPDLSKVR---SNCPKRMKRLMAECLKKKRDERPSFP----RILA  281 (289)
T ss_dssp             SSCTTSSCCCHHHHHHHHHHTSCCCCTTSSC---TTSCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCccccchHHHHHHHhcccccCcchhhcc---ccCCHHHHHHHHHHccCChhhCCCHH----HHHH
Confidence            9999998776655554443222211111100   01223589999999999999999997    5554

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.2e-44  Score=377.45  Aligned_cols=251  Identities=23%  Similarity=0.285  Sum_probs=198.5

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+.+..++|++.+.||+|+||.||+|+++.      +..||||+++....    ..+.+.+|+.+|++++||||++++++
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~  247 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNG------TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAV  247 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETT------TEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEECC------CceEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            456777899999999999999999999874      35699999976432    23457779999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+ +..|+||||+++|+|.+++.......++...                            +..++.||+.||+|||+
T Consensus       248 ~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~----------------------------~~~i~~qi~~~l~~LH~  298 (452)
T 1fmk_A          248 VSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQ----------------------------LVDMAAQIASGMAYVER  298 (452)
T ss_dssp             ECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             EcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            876 6789999999999999998653222232222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.++.+||+|||+++......                                            
T Consensus       299 ~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~--------------------------------------------  334 (452)
T 1fmk_A          299 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE--------------------------------------------  334 (452)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------------------------------------------
T ss_pred             CCeeCCCCChhhEEECCCCCEEECCCccceecCCCc--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........+|+.|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       335 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P  381 (452)
T 1fmk_A          335 ---------------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP  381 (452)
T ss_dssp             -----------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------------------------eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCC
Confidence                                             000112347889999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+....+....+..+... +... .      .+..+.+||.+||+.||++|||+.
T Consensus       382 ~~~~~~~~~~~~i~~~~~~-~~~~-~------~~~~l~~li~~cl~~dP~~Rpt~~  429 (452)
T 1fmk_A          382 YPGMVNREVLDQVERGYRM-PCPP-E------CPESLHDLMCQCWRKEPEERPTFE  429 (452)
T ss_dssp             STTCCHHHHHHHHHTTCCC-CCCT-T------SCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCHHHHHHHHHcCCCC-CCCC-C------CCHHHHHHHHHHccCChhhCcCHH
Confidence            9999888887777655321 1111 1      123589999999999999999996

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3.5e-44  Score=353.31  Aligned_cols=258  Identities=24%  Similarity=0.306  Sum_probs=190.0

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh--cCCCCccceeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM--LDHPFLPTLYAE  157 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~  157 (517)
                      +...++|++++.||+|+||.||+|++.       ++.||||++.....      ..+..|.+++..  ++||||++++++
T Consensus         4 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-------~~~vavK~~~~~~~------~~~~~e~~~~~~~~l~h~niv~~~~~   70 (301)
T 3q4u_A            4 RTVARDITLLECVGKGRYGEVWRGSWQ-------GENVAVKIFSSRDE------KSWFRETELYNTVMLRHENILGFIAS   70 (301)
T ss_dssp             CCCGGGCEEEEEEEECSSEEEEEEEET-------TEEEEEEEECGGGH------HHHHHHHHHHHHTCCCCTTBCCEEEE
T ss_pred             ccccCcEEEEEeeccCCCcEEEEEEEC-------CEEEEEEEeccccc------hhhHHHHHHHHHhhccCcCeeeEEEe
Confidence            345689999999999999999999874       47899999976532      223346666665  799999999998


Q ss_pred             eec----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          158 FEA----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       158 ~~~----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      +..    ...+|+||||+++|+|.++++..   .++...                            +..++.||+.||+
T Consensus        71 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~----------------------------~~~i~~~i~~~l~  119 (301)
T 3q4u_A           71 DMTSRHSSTQLWLITHYHEMGSLYDYLQLT---TLDTVS----------------------------CLRIVLSIASGLA  119 (301)
T ss_dssp             EEEEETTEEEEEEEECCCTTCBHHHHHTTC---CBCHHH----------------------------HHHHHHHHHHHHH
T ss_pred             eccccCCCceeEEehhhccCCCHHHHHhhc---ccCHHH----------------------------HHHHHHHHHHHHH
Confidence            643    45689999999999999998542   233222                            2367899999999


Q ss_pred             HHH--------hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccc
Q 010140          234 YLH--------MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLS  305 (517)
Q Consensus       234 yLH--------~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (517)
                      |||        ++||+||||||+|||++.++.+||+|||+++........                              
T Consensus       120 ~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~------------------------------  169 (301)
T 3q4u_A          120 HLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ------------------------------  169 (301)
T ss_dssp             HHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTE------------------------------
T ss_pred             HHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeeccccccc------------------------------
Confidence            999        999999999999999999999999999998543211000                              


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC------CCCccch
Q 010140          306 CFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ------GHGSAVD  379 (517)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~------~~~~~~D  379 (517)
                                                                  ........+||+.|+|||++.+.      .++.++|
T Consensus       170 --------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~D  205 (301)
T 3q4u_A          170 --------------------------------------------LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVD  205 (301)
T ss_dssp             --------------------------------------------EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHH
T ss_pred             --------------------------------------------ccccccccccccceeChhhhcCcCCCCcccCCchhh
Confidence                                                        00112334799999999999887      3457999


Q ss_pred             HHHHHHHHHHHhhC----------CCCCCCCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCc
Q 010140          380 WWTLGVFLYEMLYG----------TTPFKGEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       380 iWSlGvil~elltG----------~~Pf~~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP  445 (517)
                      ||||||++|||++|          ..||....    ....+..........+...... ........+.+||.+||+.||
T Consensus       206 vwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP  284 (301)
T 3q4u_A          206 IWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRW-FSDPTLTSLAKLMKECWYQNP  284 (301)
T ss_dssp             HHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGG-GGSHHHHHHHHHHHHHCCSSG
T ss_pred             HHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhh-ccCccHHHHHHHHHHHhhcCh
Confidence            99999999999999          88986532    2334444443322222221110 011234569999999999999


Q ss_pred             ccccCCCCChHHhhc
Q 010140          446 KKRIGSLKGSVEIKR  460 (517)
Q Consensus       446 ~~R~t~~~~~~ell~  460 (517)
                      ++|||+.    |+++
T Consensus       285 ~~Rps~~----~i~~  295 (301)
T 3q4u_A          285 SARLTAL----RIKK  295 (301)
T ss_dssp             GGSCCHH----HHHH
T ss_pred             hhCCCHH----HHHH
Confidence            9999997    6654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-45  Score=361.79  Aligned_cols=255  Identities=27%  Similarity=0.371  Sum_probs=192.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH---HHHHhHHHHHHHHHHhc----CCCCccc
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI---RKKLHRADMEKVILTML----DHPFLPT  153 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~~E~~il~~l----~HpnIv~  153 (517)
                      ...++|++++.||+|+||.||+|++..     +++.||||++.......   ......+.+|+.++.++    +||||++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~  102 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLT-----DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIR  102 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTT-----TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEcc-----CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeee
Confidence            345789999999999999999998876     67899999997543211   12233455699999998    8999999


Q ss_pred             eeeeeecCceeEEEEEe-cCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          154 LYAEFEASHYSCLVMEY-CPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       154 l~~~~~~~~~~~lV~E~-~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      +++++...+..|+|||| +.+++|.+++....  .+....                            ++.++.||+.||
T Consensus       103 ~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~----------------------------~~~~~~qi~~~l  152 (312)
T 2iwi_A          103 LLDWFETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGP----------------------------SRCFFGQVVAAI  152 (312)
T ss_dssp             EEEEC-----CEEEEECCSSEEEHHHHHHHHC--SCCHHH----------------------------HHHHHHHHHHHH
T ss_pred             EEEEEecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHH----------------------------HHHHHHHHHHHH
Confidence            99999999999999999 78999999987642  222222                            236789999999


Q ss_pred             HHHHhcCceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          233 EYLHMMGIVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                      +|||++||+||||||+|||++ .++.+||+|||+++....                                        
T Consensus       153 ~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~----------------------------------------  192 (312)
T 2iwi_A          153 QHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHD----------------------------------------  192 (312)
T ss_dssp             HHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCS----------------------------------------
T ss_pred             HHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhccc----------------------------------------
Confidence            999999999999999999999 889999999999843321                                        


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEM  390 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~el  390 (517)
                                                              .......||+.|+|||++.+..+ +.++|||||||++|+|
T Consensus       193 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l  232 (312)
T 2iwi_A          193 ----------------------------------------EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDM  232 (312)
T ss_dssp             ----------------------------------------SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHH
Confidence                                                    01123468999999999987765 4589999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      ++|+.||....      .+......++..         ....+.+||.+||+.||++||++.    |+++||||+....
T Consensus       233 ~~g~~pf~~~~------~~~~~~~~~~~~---------~~~~~~~li~~~l~~~p~~Rps~~----e~l~~~~~~~~~~  292 (312)
T 2iwi_A          233 VCGDIPFERDQ------EILEAELHFPAH---------VSPDCCALIRRCLAPKPSSRPSLE----EILLDPWMQTPAE  292 (312)
T ss_dssp             HHSSCSCCSHH------HHHHTCCCCCTT---------SCHHHHHHHHHHTCSSTTTSCCHH----HHHHSTTTCC---
T ss_pred             HHCCCCCCChH------HHhhhccCCccc---------CCHHHHHHHHHHccCChhhCcCHH----HHhcChhhcCchh
Confidence            99999997532      233333333321         122589999999999999999998    9999999997543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.5e-45  Score=373.66  Aligned_cols=258  Identities=24%  Similarity=0.379  Sum_probs=197.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++.+.||+|+||.||+|+++.     +++.||||++......  .....+.+|+.+|+.++||||+++++++..
T Consensus         6 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~-----~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~   78 (396)
T 4eut_A            6 TSNHLWLLSDILGQGATANVFRGRHKK-----TGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLNHKNIVKLFAIEEE   78 (396)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECGGGGG--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CCCCceEEEEEEEcCCCeEEEEEEECC-----CCcEEEEEEecccccc--chHHHHHHHHHHHHhcCCCCCCeEEEeecc
Confidence            345789999999999999999999986     6789999999754321  224556679999999999999999999986


Q ss_pred             Cc--eeEEEEEecCCCchhHHHHhCCCC-ccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          161 SH--YSCLVMEYCPGGDLYAARQRQPGK-RFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       161 ~~--~~~lV~E~~~gg~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      ..  ..|+|||||+||+|.+++...... .++..                            .++.++.||+.||+|||+
T Consensus        79 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~----------------------------~~~~i~~qi~~aL~~LH~  130 (396)
T 4eut_A           79 TTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPES----------------------------EFLIVLRDVVGGMNHLRE  130 (396)
T ss_dssp             TTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHH----------------------------HHHHHHHHHHHHHHHHHH
Confidence            54  789999999999999988654211 12222                            234788999999999999


Q ss_pred             cCceeccCCCCceEE----ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          238 MGIVYRDLKPENVLV----REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       238 ~~iiHrDLKp~NILl----~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      +||+||||||+|||+    +.++.+||+|||+++.....                                         
T Consensus       131 ~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~-----------------------------------------  169 (396)
T 4eut_A          131 NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-----------------------------------------  169 (396)
T ss_dssp             TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCG-----------------------------------------
T ss_pred             CCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCC-----------------------------------------
Confidence            999999999999999    77788999999998543210                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--------CCCCccchHHHHHH
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--------QGHGSAVDWWTLGV  385 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--------~~~~~~~DiWSlGv  385 (517)
                                                            ......+||+.|+|||++.+        ..++.++|||||||
T Consensus       170 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~  211 (396)
T 4eut_A          170 --------------------------------------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGV  211 (396)
T ss_dssp             --------------------------------------GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHH
Confidence                                                  11223469999999999875        45788999999999


Q ss_pred             HHHHHhhCCCCCCC----CChHHHHHHHhcCCCCCCC----------------CCCCCchhHHhhhhHHHHHHHhccCCc
Q 010140          386 FLYEMLYGTTPFKG----ENNEKTLINILKKPLTFPR----------------IGVSSSKEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       386 il~elltG~~Pf~~----~~~~~~~~~i~~~~~~~p~----------------~~~~~~~~~~~~~~l~dLi~~~L~~dP  445 (517)
                      ++|||++|+.||..    ....+.+.++..+......                ......-.......+.+||.+||+.||
T Consensus       212 il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP  291 (396)
T 4eut_A          212 TFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQ  291 (396)
T ss_dssp             HHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCT
T ss_pred             HHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccCh
Confidence            99999999999974    2345666666654322100                000000011234468999999999999


Q ss_pred             ccccCCC
Q 010140          446 KKRIGSL  452 (517)
Q Consensus       446 ~~R~t~~  452 (517)
                      ++||++.
T Consensus       292 ~~R~s~~  298 (396)
T 4eut_A          292 EKCWGFD  298 (396)
T ss_dssp             TTSCCHH
T ss_pred             hhhccHH
Confidence            9999997

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=359.97  Aligned_cols=259  Identities=20%  Similarity=0.220  Sum_probs=195.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|++...... ....||+|.+....  .......+.+|+.+++.++||||+++++++..
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~-~~~kv~iK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   88 (327)
T 3lzb_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEK-VKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECCTTCS-CCEEEEEEEECCCS--SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES
T ss_pred             cCHhHceEEEEeeeCCCeEEEEEEEcCCCce-EEEEEEEEeecccc--CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec
Confidence            4568999999999999999999998763221 12345777664321  11234566779999999999999999999987


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      +. .++||||+.+|+|.+++.... ..++...                            +..|+.||+.||+|||++||
T Consensus        89 ~~-~~~v~~~~~~g~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~aL~~LH~~~i  138 (327)
T 3lzb_A           89 ST-VQLITQLMPFGCLLDYVREHK-DNIGSQY----------------------------LLNWCVQIAKGMNYLEDRRL  138 (327)
T ss_dssp             SS-EEEEECCCSSCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             CC-ceEEEEecCCCcHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHhhCCC
Confidence            65 889999999999999987643 2232222                            23678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++.......                                              
T Consensus       139 vH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~----------------------------------------------  172 (327)
T 3lzb_A          139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK----------------------------------------------  172 (327)
T ss_dssp             CCSCCCGGGEEEEETTEEEECCTTC-------------------------------------------------------
T ss_pred             cCCCCCHHHEEEcCCCCEEEccCcceeEccCccc----------------------------------------------
Confidence            9999999999999999999999999854321100                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+
T Consensus       173 ------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~  222 (327)
T 3lzb_A          173 ------------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  222 (327)
T ss_dssp             -------------------------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ------------------------------cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCC
Confidence                                          001122357889999999999999999999999999999999 9999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ....+....+......... . .      ...++.+||.+||..||.+||++.    |+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~-~-~------~~~~l~~li~~~l~~dp~~Rps~~----ell~  271 (327)
T 3lzb_A          223 IPASEISSILEKGERLPQP-P-I------CTIDVYMIMRKCWMIDADSRPKFR----ELII  271 (327)
T ss_dssp             CCGGGHHHHHHTTCCCCCC-T-T------BCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCHHHHHHHHHcCCCCCCC-c-c------CCHHHHHHHHHHcCCChhHCcCHH----HHHH
Confidence            8877776666554322111 1 1      122589999999999999999997    5554

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=4e-44  Score=355.27  Aligned_cols=264  Identities=18%  Similarity=0.226  Sum_probs=198.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|.+.+.||+|+||.||+|+......  ++..||+|++...... ......+.+|+.+++.++||||+++++++
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  105 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDG--TSLKVAVKTMKLDNSS-QREIEEFLSEAACMKDFSHPNVIRLLGVC  105 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTS--CEEEEEEEEC---CCC-HHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCC--ceeEEEEEEEeccccc-hhHHHHHHHHHHHHhcCCCCCeeeeeEEE
Confidence            44566899999999999999999998875322  4568999998754221 23345677899999999999999999999


Q ss_pred             ecCc-----eeEEEEEecCCCchhHHHHhCCC----CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          159 EASH-----YSCLVMEYCPGGDLYAARQRQPG----KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       159 ~~~~-----~~~lV~E~~~gg~L~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      ....     ..|+||||+++|+|.+++.....    ..+++                            ..+..++.||+
T Consensus       106 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~----------------------------~~~~~i~~qi~  157 (313)
T 3brb_A          106 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPL----------------------------QTLLKFMVDIA  157 (313)
T ss_dssp             EC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCH----------------------------HHHHHHHHHHH
T ss_pred             eeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCH----------------------------HHHHHHHHHHH
Confidence            7654     45999999999999999854321    11222                            22347889999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                      .||.|||++||+||||||+|||++.++.+||+|||+++.......                                   
T Consensus       158 ~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------  202 (313)
T 3brb_A          158 LGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDY-----------------------------------  202 (313)
T ss_dssp             HHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC-------------------------------------------
T ss_pred             HHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceecccccc-----------------------------------
Confidence            999999999999999999999999999999999999854321000                                   


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYE  389 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~e  389 (517)
                                                               ........|++.|+|||++.+..++.++|||||||++|+
T Consensus       203 -----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  241 (313)
T 3brb_A          203 -----------------------------------------YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWE  241 (313)
T ss_dssp             -------------------------------------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHH
Confidence                                                     001122357889999999999999999999999999999


Q ss_pred             Hhh-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          390 MLY-GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       390 llt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |++ |..||.+.........+.........  ..      .+..+.+||.+||..||.+||++.    +++++
T Consensus       242 l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~l~~li~~~l~~dp~~Rps~~----~l~~~  302 (313)
T 3brb_A          242 IATRGMTPYPGVQNHEMYDYLLHGHRLKQP--ED------CLDELYEIMYSCWRTDPLDRPTFS----VLRLQ  302 (313)
T ss_dssp             HHTTSCCSSTTCCGGGHHHHHHTTCCCCCB--TT------CCHHHHHHHHHTTCSSGGGSCCHH----HHHHH
T ss_pred             HHhcCCCCCccCCHHHHHHHHHcCCCCCCC--cc------ccHHHHHHHHHHcCCChhhCcCHH----HHHHH
Confidence            999 99999998888777777665322111  11      122589999999999999999997    66654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.6e-44  Score=352.01  Aligned_cols=248  Identities=22%  Similarity=0.294  Sum_probs=192.9

Q ss_pred             hhcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCcccee
Q 010140           76 RAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLY  155 (517)
Q Consensus        76 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~  155 (517)
                      ...+.+..++|++++.||+|+||.||+|++.       ++.||||++....     ..+.+.+|+.+++.++||||++++
T Consensus        13 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-------~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~   80 (278)
T 1byg_A           13 RSGWALNMKELKLLQTIGKGEFGDVMLGDYR-------GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLL   80 (278)
T ss_dssp             --CCBCCGGGEEEEEEEEECSSCEEEEEEET-------TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEE
T ss_pred             hccccCChhhceEEeEEecCCCceEEEEEEc-------CCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEE
Confidence            3445677899999999999999999999864       4789999997652     345667799999999999999999


Q ss_pred             eeeec-CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          156 AEFEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       156 ~~~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                      +++.. .+..|+||||+++|+|.+++.......++..                            .+..++.||+.||+|
T Consensus        81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~----------------------------~~~~~~~~i~~~l~~  132 (278)
T 1byg_A           81 GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGD----------------------------CLLKFSLDVCEAMEY  132 (278)
T ss_dssp             EEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHH----------------------------HHHHHHHHHHHHHHH
Confidence            98654 4579999999999999999876421112221                            224678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.+||+|||++.....                                           
T Consensus       133 lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~-------------------------------------------  169 (278)
T 1byg_A          133 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS-------------------------------------------  169 (278)
T ss_dssp             HHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------------------------------------------------
T ss_pred             HHhCCccccCCCcceEEEeCCCcEEEeeccccccccc-------------------------------------------
Confidence            9999999999999999999999999999999742210                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-C
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-G  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G  393 (517)
                                                            ......+++.|+|||++.+..++.++|||||||++|+|++ |
T Consensus       170 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g  211 (278)
T 1byg_A          170 --------------------------------------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFG  211 (278)
T ss_dssp             --------------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             --------------------------------------cccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCC
Confidence                                                  0112247889999999998889999999999999999998 9


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..||......+....+........  ....      +..+.+||.+||+.||.+||++.
T Consensus       212 ~~p~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~l~~li~~~l~~~p~~Rps~~  262 (278)
T 1byg_A          212 RVPYPRIPLKDVVPRVEKGYKMDA--PDGC------PPAVYEVMKNCWHLDAAMRPSFL  262 (278)
T ss_dssp             CCSCTTSCGGGHHHHHTTTCCCCC--CTTC------CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCC--cccC------CHHHHHHHHHHhcCChhhCCCHH
Confidence            999998887777766655422111  1111      23589999999999999999997

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.2e-44  Score=367.04  Aligned_cols=291  Identities=14%  Similarity=0.150  Sum_probs=199.4

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHH--------HHhHHHHHHHHHHhcCCCCccc
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRK--------KLHRADMEKVILTMLDHPFLPT  153 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~--------~~~~~~~E~~il~~l~HpnIv~  153 (517)
                      ..++|++++.||+|+||.||+|.++.......++.||||++.........        .......|+..++.++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            44689999999999999999999876433334688999998654321111        1123445667788889999999


Q ss_pred             eeeeeecC----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHH
Q 010140          154 LYAEFEAS----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETL  229 (517)
Q Consensus       154 l~~~~~~~----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~  229 (517)
                      +++++...    .+.||||||| |++|.+++.... ..++....                            +.|+.||+
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~-~~l~~~~~----------------------------~~i~~qi~  162 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA-KRFSRKTV----------------------------LQLSLRIL  162 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT-SCCCHHHH----------------------------HHHHHHHH
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc-CCCCHHHH----------------------------HHHHHHHH
Confidence            99998764    5689999999 999999987642 23333322                            37889999


Q ss_pred             HHHHHHHhcCceeccCCCCceEEc--cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccc
Q 010140          230 LALEYLHMMGIVYRDLKPENVLVR--EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCF  307 (517)
Q Consensus       230 ~aL~yLH~~~iiHrDLKp~NILl~--~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (517)
                      .||+|||++||+||||||+|||++  .++.+||+|||+++.+.......                               
T Consensus       163 ~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~-------------------------------  211 (364)
T 3op5_A          163 DILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHK-------------------------------  211 (364)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCC-------------------------------
T ss_pred             HHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCccc-------------------------------
Confidence            999999999999999999999999  88999999999996543211000                               


Q ss_pred             cccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHH
Q 010140          308 SSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFL  387 (517)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil  387 (517)
                                                              ..........+||+.|+|||++.+..++.++|||||||++
T Consensus       212 ----------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l  251 (364)
T 3op5_A          212 ----------------------------------------AYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCM  251 (364)
T ss_dssp             ----------------------------------------CSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHH
Confidence                                                    0001112345799999999999999999999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCC--CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChH---Hh---h
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPL--TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV---EI---K  459 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~--~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~---el---l  459 (517)
                      |||++|+.||.+...............  ..+............+.++.+||..||..||.+||++.+..+   ++   +
T Consensus       252 ~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          252 IQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             HHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence            999999999986433222221111000  000000000000011235899999999999999999862211   11   1


Q ss_pred             cCCCcCCCCccccc
Q 010140          460 RHEFFKGINWALIR  473 (517)
Q Consensus       460 ~hp~f~~~~~~~~~  473 (517)
                      ..++-...||....
T Consensus       332 ~~~~~~~~dw~~~~  345 (364)
T 3op5_A          332 GSKDDGKLDLSVVE  345 (364)
T ss_dssp             TCCCCCCCCC----
T ss_pred             CCCcCCccceEecc
Confidence            34556677887553

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.3e-44  Score=359.41  Aligned_cols=263  Identities=24%  Similarity=0.323  Sum_probs=184.5

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ...+..++|++++.||+|+||.||+|+..       ++.||||++.......    .....|+..+..++||||+++++.
T Consensus         7 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-------~~~vavK~~~~~~~~~----~~~e~~~~~~~~~~h~~i~~~~~~   75 (336)
T 3g2f_A            7 EPSLDLDNLKLLELIGRGRYGAVYKGSLD-------ERPVAVKVFSFANRQN----FINEKNIYRVPLMEHDNIARFIVG   75 (336)
T ss_dssp             --CCCTTSEEEEEEEEECSSEEEEEEEET-------TEEEEEEEEEGGGHHH----HHHHHHHHTSTTCCCTTBCCEEEE
T ss_pred             CCCcChHHhheeeecccCCCeEEEEEEEC-------CeEEEEEEeeccchhh----HHHHHHHHHHHhccCcchhhheec
Confidence            34577899999999999999999999763       4789999997543211    111224444556899999999985


Q ss_pred             ee-----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          158 FE-----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       158 ~~-----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      +.     ....+|+|||||++|+|.+++.....   ...                            ....++.||+.||
T Consensus        76 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~---~~~----------------------------~~~~i~~qi~~~L  124 (336)
T 3g2f_A           76 DERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS---DWV----------------------------SSCRLAHSVTRGL  124 (336)
T ss_dssp             EEEECTTSCEEEEEEECCCTTCBHHHHHHHCCB---CHH----------------------------HHHHHHHHHHHHH
T ss_pred             ccccccCCCceEEEEEecCCCCcHHHHHhhccc---chh----------------------------HHHHHHHHHHHHH
Confidence            53     34468999999999999999876421   111                            1236789999999


Q ss_pred             HHHHhc---------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCc
Q 010140          233 EYLHMM---------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPV  303 (517)
Q Consensus       233 ~yLH~~---------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (517)
                      +|||++         ||+||||||+|||++.++.+||+|||+++.+.......                           
T Consensus       125 ~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~---------------------------  177 (336)
T 3g2f_A          125 AYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVR---------------------------  177 (336)
T ss_dssp             HHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC----------------------------
T ss_pred             HHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccC---------------------------
Confidence            999999         99999999999999999999999999986543211000                           


Q ss_pred             cccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-------CCCCc
Q 010140          304 LSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-------QGHGS  376 (517)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-------~~~~~  376 (517)
                                                                 ...........+||+.|+|||++.+       ..++.
T Consensus       178 -------------------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  214 (336)
T 3g2f_A          178 -------------------------------------------PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALK  214 (336)
T ss_dssp             ---------------------------------------------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHH
T ss_pred             -------------------------------------------ccccccccccCCCccceeCchhhcCCccccccccccc
Confidence                                                       0000112234579999999999987       34567


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCCC-----------------hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHH
Q 010140          377 AVDWWTLGVFLYEMLYGTTPFKGEN-----------------NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISK  439 (517)
Q Consensus       377 ~~DiWSlGvil~elltG~~Pf~~~~-----------------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~  439 (517)
                      ++|||||||++|||++|..||....                 ...............+..............++.+||.+
T Consensus       215 ~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  294 (336)
T 3g2f_A          215 QVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIED  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHH
Confidence            8999999999999999977654321                 11222222222222222222222222334469999999


Q ss_pred             hccCCcccccCCC
Q 010140          440 LLVKNPKKRIGSL  452 (517)
Q Consensus       440 ~L~~dP~~R~t~~  452 (517)
                      ||+.||++|||+.
T Consensus       295 cl~~dP~~Rps~~  307 (336)
T 3g2f_A          295 CWDQDAEARLTAQ  307 (336)
T ss_dssp             HSCSSGGGSCCHH
T ss_pred             HhcCChhhCcchH
Confidence            9999999999997

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-44  Score=366.55  Aligned_cols=258  Identities=17%  Similarity=0.206  Sum_probs=191.7

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee-ecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF-EASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~~  162 (517)
                      ..|++.+.||+|+||.||+|++.....  ....||+|.+....  ......++.+|+.+|++++||||+++++++ ..++
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~  164 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDG--KKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG  164 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTT--EEEEEEEEECCSCS--CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCC--cEEEEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC
Confidence            458899999999999999999865311  34578999986431  123346677899999999999999999986 4566


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|+||||+++|+|.+++.... ..+...                            .+..++.||+.||+|||++||+|
T Consensus       165 ~~~lv~e~~~~g~L~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~aL~~LH~~~ivH  215 (373)
T 3c1x_A          165 SPLVVLPYMKHGDLRNFIRNET-HNPTVK----------------------------DLIGFGLQVAKGMKFLASKKFVH  215 (373)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTT-CCCBHH----------------------------HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CeEEEEECCCCCCHHHHHhhcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHHCCEec
Confidence            8899999999999999987532 112211                            22367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.+......                                               
T Consensus       216 rDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~-----------------------------------------------  248 (373)
T 3c1x_A          216 RDLAARNCMLDEKFTVKVADFGLARDMYDKEFD-----------------------------------------------  248 (373)
T ss_dssp             SCCCGGGEEECTTCCEEECCC-----------------------------------------------------------
T ss_pred             CccchheEEECCCCCEEEeeccccccccccccc-----------------------------------------------
Confidence            999999999999999999999998543210000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                 .........||+.|+|||++.+..++.++|||||||++|||++ |.+||.+.+
T Consensus       249 ---------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~  301 (373)
T 3c1x_A          249 ---------------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN  301 (373)
T ss_dssp             ------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             ---------------------------cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC
Confidence                                       0001123357889999999999999999999999999999999 788998877


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      ..+....+..+........        .+..+.+||.+||+.||++||++.    |+++
T Consensus       302 ~~~~~~~~~~~~~~~~p~~--------~~~~l~~li~~cl~~dp~~RPs~~----ell~  348 (373)
T 3c1x_A          302 TFDITVYLLQGRRLLQPEY--------CPDPLYEVMLKCWHPKAEMRPSFS----ELVS  348 (373)
T ss_dssp             SSCHHHHHHTTCCCCCCTT--------CCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             HHHHHHHHHcCCCCCCCCC--------CCHHHHHHHHHHcCCChhhCcCHH----HHHH
Confidence            7666666666543222111        122589999999999999999997    5554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-43  Score=347.50  Aligned_cols=254  Identities=17%  Similarity=0.187  Sum_probs=194.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      -.|.+.+.||+|+||.||+|++.....  .+..||+|++.....  ....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus        21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~--~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   96 (298)
T 3pls_A           21 VVTHSDRVIGKGHFGVVYHGEYIDQAQ--NRIQCAIKSLSRITE--MQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG   96 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSSS--CEEEEEEEEETTCCS--HHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS
T ss_pred             eEEccCceeccCCCceEEEEEEecCCC--ceeeeeeeecccccc--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC
Confidence            356778999999999999999875322  345799999875321  2345667789999999999999999999986665


Q ss_pred             e-EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          164 S-CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       164 ~-~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      . |+||||+.+|+|.+++.... ..++...                            +..++.||+.||+|||++||+|
T Consensus        97 ~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~LH~~~i~H  147 (298)
T 3pls_A           97 LPHVLLPYMCHGDLLQFIRSPQ-RNPTVKD----------------------------LISFGLQVARGMEYLAEQKFVH  147 (298)
T ss_dssp             CCEEEECCCTTCBHHHHHHCTT-CCCBHHH----------------------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEecccCCCHHHHHhccc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCccc
Confidence            5 99999999999999987632 2222222                            2367899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++........                                               
T Consensus       148 ~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-----------------------------------------------  180 (298)
T 3pls_A          148 RDLAARNCMLDESFTVKVADFGLARDILDREYY-----------------------------------------------  180 (298)
T ss_dssp             SCCSGGGEEECTTCCEEECCTTSSCTTTTGGGG-----------------------------------------------
T ss_pred             CCCCcceEEEcCCCcEEeCcCCCcccccCCccc-----------------------------------------------
Confidence            999999999999999999999998543211000                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                 .........||+.|+|||.+.+..++.++|||||||++|+|++ |.+||...+
T Consensus       181 ---------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~  233 (298)
T 3pls_A          181 ---------------------------SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID  233 (298)
T ss_dssp             ---------------------------CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred             ---------------------------ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC
Confidence                                       0111233468899999999999999999999999999999999 555666666


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....+......... . ..      +..+.+||.+||+.||.+||++.
T Consensus       234 ~~~~~~~~~~~~~~~~~-~-~~------~~~l~~li~~~l~~~p~~Rps~~  276 (298)
T 3pls_A          234 PFDLTHFLAQGRRLPQP-E-YC------PDSLYQVMQQCWEADPAVRPTFR  276 (298)
T ss_dssp             GGGHHHHHHTTCCCCCC-T-TC------CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHHHhhcCCCCCCC-c-cc------hHHHHHHHHHHccCChhhCcCHH
Confidence            66666655554322111 1 11      12489999999999999999997

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=8.9e-44  Score=350.74  Aligned_cols=258  Identities=22%  Similarity=0.248  Sum_probs=192.7

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +...+|++++.||+|+||.||+|+...... .+++.||||++.....  ......+.+|+.+|+.++||||+++++++..
T Consensus        18 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   94 (302)
T 4e5w_A           18 FEKRFLKRIRDLGEGHFGKVELCRYDPEGD-NTGEQVAVKSLKPESG--GNHIADLKKEIEILRNLYHENIVKYKGICTE   94 (302)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECTTSS-SCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhhhhccCCCCceEEEEEEEccccC-ccCeEEEEEEeccccc--chhHHHHHHHHHHHHhCCCCCeeeeeeEEec
Confidence            445679999999999999999999542211 2678999999986532  2345677789999999999999999999987


Q ss_pred             C--ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 S--HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 ~--~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .  ..+|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus        95 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~~~~~i~~~l~~lH~~  145 (302)
T 4e5w_A           95 DGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQ----------------------------QLKYAVQICKGMDYLGSR  145 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHHT-TTCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHH----------------------------HHHHHHHHHHHHHHhhcC
Confidence            6  67899999999999999986542 2222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||++.........                                           
T Consensus       146 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------  182 (302)
T 4e5w_A          146 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY-------------------------------------------  182 (302)
T ss_dssp             TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCE-------------------------------------------
T ss_pred             CcccCCCchheEEEcCCCCEEECcccccccccCCCcc-------------------------------------------
Confidence            9999999999999999999999999998543321100                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++|..|+.
T Consensus       183 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  230 (302)
T 4e5w_A          183 --------------------------------YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS  230 (302)
T ss_dssp             --------------------------------EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             --------------------------------eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence                                            011223468899999999999889999999999999999999998864


Q ss_pred             CC--------------ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GE--------------NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~--------------~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..              .....+..........+... .      .+..+.+||.+||+.||.+||++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~~l~~dp~~Rps~~  291 (302)
T 4e5w_A          231 SPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPP-N------CPDEVYQLMRKCWEFQPSNRTSFQ  291 (302)
T ss_dssp             SHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCT-T------CCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             chhhHHhhccCCcccccCHHHHHHHHhccCCCCCCC-C------CCHHHHHHHHHHcCCCCCCCCCHH
Confidence            21              12222222222222222111 1      122589999999999999999997

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.1e-44  Score=353.65  Aligned_cols=245  Identities=25%  Similarity=0.362  Sum_probs=195.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec---
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA---  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~---  160 (517)
                      ++|++++.||+|+||.||+|++..     +++.||+|++....       ..+.+|+.+++.++||||+++++++..   
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   78 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRI-----DGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDY   78 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETT-----TCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEE
T ss_pred             cccceeeeeccCCceEEEEEEEcC-----CCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEecccc
Confidence            579999999999999999999876     67899999997542       345569999999999999999998864   


Q ss_pred             -------------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHH
Q 010140          161 -------------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAE  227 (517)
Q Consensus       161 -------------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  227 (517)
                                   ...+|+||||+++|+|.+++.......++...                            +..++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~----------------------------~~~i~~q  130 (284)
T 2a19_B           79 DPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVL----------------------------ALELFEQ  130 (284)
T ss_dssp             C---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHH----------------------------HHHHHHH
T ss_pred             CcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHH----------------------------HHHHHHH
Confidence                         45689999999999999999765333333222                            2367899


Q ss_pred             HHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccc
Q 010140          228 TLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCF  307 (517)
Q Consensus       228 i~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (517)
                      |+.||.|||++||+||||||+|||++.++.+||+|||++......                                   
T Consensus       131 i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------------------  175 (284)
T 2a19_B          131 ITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND-----------------------------------  175 (284)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCC-----------------------------------
T ss_pred             HHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhheecccc-----------------------------------
Confidence            999999999999999999999999999999999999998443210                                   


Q ss_pred             cccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHH
Q 010140          308 SSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFL  387 (517)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil  387 (517)
                                                                  .......||+.|+|||++.+..++.++|||||||++
T Consensus       176 --------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  211 (284)
T 2a19_B          176 --------------------------------------------GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLIL  211 (284)
T ss_dssp             --------------------------------------------SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccccCCcccccChhhhccCCCcchhhhHHHHHHH
Confidence                                                        011234689999999999998899999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      |+|++|..||...  ......+.....  +.   ..      ...+.+||.+||+.||.+||++.    |+++|.+.
T Consensus       212 ~~l~~~~~~~~~~--~~~~~~~~~~~~--~~---~~------~~~~~~li~~~l~~dp~~Rps~~----e~l~~l~~  271 (284)
T 2a19_B          212 AELLHVCDTAFET--SKFFTDLRDGII--SD---IF------DKKEKTLLQKLLSKKPEDRPNTS----EILRTLTV  271 (284)
T ss_dssp             HHHHSCCSSHHHH--HHHHHHHHTTCC--CT---TS------CHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHH
T ss_pred             HHHHhcCCcchhH--HHHHHHhhcccc--cc---cC------CHHHHHHHHHHccCChhhCcCHH----HHHHHHHH
Confidence            9999999988532  223333333221  11   11      12489999999999999999997    99998764

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=7.5e-44  Score=349.95  Aligned_cols=276  Identities=19%  Similarity=0.244  Sum_probs=198.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee-ecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF-EAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~  161 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++....     ....+.+|+.+++.++|++++..+..+ ...
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~-----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~   77 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIA-----AGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEG   77 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETT-----TTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEET
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcC-----CCceEEEEeecccc-----cchHHHHHHHHHHHhcCCCCCCeeeeecCCC
Confidence            3789999999999999999999876     67899999876542     234567799999999888877666554 678


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+ +++|.+++.... ..++...                            ++.++.||+.||+|||++||+
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~LH~~~iv  127 (296)
T 4hgt_A           78 DYNVMVMELL-GPSLEDLFNFCS-RKFSLKT----------------------------VLLLADQMISRIEYIHSKNFI  127 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CceEEEEEcc-CCCHHHHHHHhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCee
Confidence            8899999999 999999987532 2233322                            247889999999999999999


Q ss_pred             eccCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||+   +.++.+||+|||+++.........                                          
T Consensus       128 H~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~------------------------------------------  165 (296)
T 4hgt_A          128 HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ------------------------------------------  165 (296)
T ss_dssp             CSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC------------------------------------------
T ss_pred             cCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCc------------------------------------------
Confidence            99999999999   788999999999985433211000                                          


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ...........||+.|+|||++.+..++.++|||||||++|+|++|+.||.
T Consensus       166 -----------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  216 (296)
T 4hgt_A          166 -----------------------------HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  216 (296)
T ss_dssp             -----------------------------BCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             -----------------------------cCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCc
Confidence                                         000112234579999999999999999999999999999999999999998


Q ss_pred             CCChH---HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHH---hh---cCCCcCCCCc
Q 010140          399 GENNE---KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE---IK---RHEFFKGINW  469 (517)
Q Consensus       399 ~~~~~---~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e---ll---~hp~f~~~~~  469 (517)
                      +....   ..+..+.......+.....    ...+.++.+||.+||+.||++||++.+.++.   ++   ...|-...||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~~~~~dw  292 (296)
T 4hgt_A          217 GLKAATKRQKYERISEKKMSTPIEVLC----KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDW  292 (296)
T ss_dssp             SCCCSSSSSHHHHHHHHHHHSCHHHHT----TTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCTTCCCGG
T ss_pred             ccchhhhhhhhhhhhcccccchhhhhh----ccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCccCccch
Confidence            75332   2233332221111100000    0012358999999999999999998622211   11   2456666788


Q ss_pred             cccc
Q 010140          470 ALIR  473 (517)
Q Consensus       470 ~~~~  473 (517)
                      +.++
T Consensus       293 ~~~~  296 (296)
T 4hgt_A          293 NMLK  296 (296)
T ss_dssp             GGCC
T ss_pred             hhcC
Confidence            7653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=3.4e-44  Score=381.43  Aligned_cols=251  Identities=23%  Similarity=0.288  Sum_probs=201.0

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++.++||+|+||.||+|+++.      ...||||+++....    ..+.+.+|+.+|+.++||||++++++
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~  330 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNG------TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAV  330 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETT------TEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECC------CceEEEEEeCCCCC----CHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            345667889999999999999999999874      35699999976532    23457779999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+ +.+|||||||++|+|.+++.......+....                            +..++.||+.||+|||+
T Consensus       331 ~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~----------------------------~~~i~~qi~~~L~~LH~  381 (535)
T 2h8h_A          331 VSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQ----------------------------LVDMAAQIASGMAYVER  381 (535)
T ss_dssp             ECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             Eee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence            876 6789999999999999998653222232222                            23678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.++.+||+|||+++......                                            
T Consensus       382 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--------------------------------------------  417 (535)
T 2h8h_A          382 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE--------------------------------------------  417 (535)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH--------------------------------------------
T ss_pred             CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc--------------------------------------------
Confidence            999999999999999999999999999985432100                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       ........++..|+|||++.+..++.++|||||||+||||++ |..|
T Consensus       418 ---------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P  464 (535)
T 2h8h_A          418 ---------------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP  464 (535)
T ss_dssp             ---------------------------------HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCS
T ss_pred             ---------------------------------eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                                             001122347889999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+....+.+..+..+.. .+... .      ....+.+||.+||+.||++||++.
T Consensus       465 ~~~~~~~~~~~~i~~~~~-~~~~~-~------~~~~l~~li~~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          465 YPGMVNREVLDQVERGYR-MPCPP-E------CPESLHDLMCQCWRKEPEERPTFE  512 (535)
T ss_dssp             STTCCHHHHHHHHHTTCC-CCCCT-T------CCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCHHHHHHHHHcCCC-CCCCC-C------CCHHHHHHHHHHcCCChhHCcCHH
Confidence            999988888777765432 11111 1      123589999999999999999996

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=364.11  Aligned_cols=251  Identities=18%  Similarity=0.215  Sum_probs=189.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC---CCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD---HPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~  155 (517)
                      ..+..++|++.+.||+|+||.||+|.+.......+++.||||++....      ...+.+|+.++..++   |+||++++
T Consensus        60 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~  133 (365)
T 3e7e_A           60 FQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFY  133 (365)
T ss_dssp             EECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEE
T ss_pred             EEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            345668899999999999999999965432222367899999997643      223455777777776   99999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCC---CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQP---GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLAL  232 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  232 (517)
                      +++...+..|||||||+||+|.+++....   ...+++.                            .++.|+.||+.||
T Consensus       134 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~----------------------------~~~~i~~qi~~~L  185 (365)
T 3e7e_A          134 SAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQG----------------------------LVISFAMRMLYMI  185 (365)
T ss_dssp             EEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHH----------------------------HHHHHHHHHHHHH
T ss_pred             eeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHH----------------------------HHHHHHHHHHHHH
Confidence            99999999999999999999999987531   1223222                            2347889999999


Q ss_pred             HHHHhcCceeccCCCCceEEcc-----------CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          233 EYLHMMGIVYRDLKPENVLVRE-----------DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       233 ~yLH~~~iiHrDLKp~NILl~~-----------~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      +|||++|||||||||+||||+.           ++.+||+|||+|+.+....                            
T Consensus       186 ~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----------------------------  237 (365)
T 3e7e_A          186 EQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFP----------------------------  237 (365)
T ss_dssp             HHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSC----------------------------
T ss_pred             HHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccC----------------------------
Confidence            9999999999999999999998           8999999999985432100                            


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHH
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWW  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiW  381 (517)
                                                                      ........+||+.|+|||++.+..++.++|||
T Consensus       238 ------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  269 (365)
T 3e7e_A          238 ------------------------------------------------KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYF  269 (365)
T ss_dssp             ------------------------------------------------TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHH
T ss_pred             ------------------------------------------------CCceeeeecCCCCCCChHHhcCCCCCccccHH
Confidence                                                            01122345799999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          382 TLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       382 SlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||||++|||++|+.||........     .....+...  .      ....+.+++..||+.+|.+|++..
T Consensus       270 slG~il~elltg~~pf~~~~~~~~-----~~~~~~~~~--~------~~~~~~~~~~~~l~~~p~~r~~~~  327 (365)
T 3e7e_A          270 GVAATVYCMLFGTYMKVKNEGGEC-----KPEGLFRRL--P------HLDMWNEFFHVMLNIPDCHHLPSL  327 (365)
T ss_dssp             HHHHHHHHHHHSSCCCEEEETTEE-----EECSCCTTC--S------SHHHHHHHHHHHHCCCCTTCCCCH
T ss_pred             HHHHHHHHHHhCCCccccCCCCce-----eechhcccc--C------cHHHHHHHHHHHcCCCCCCcchHH
Confidence            999999999999999965432110     000111111  1      122478999999999999998775

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-44  Score=362.65  Aligned_cols=259  Identities=18%  Similarity=0.226  Sum_probs=190.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCC---CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccc------
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVG---LPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPT------  153 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~------  153 (517)
                      .++|++.+.||+|+||.||+|++..+...   ..++.||||++...        ..+.+|+.++++++||||++      
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            47899999999999999999998753110   13678999999754        35566999999999999988      


Q ss_pred             ---------eeeeeec-CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhH
Q 010140          154 ---------LYAEFEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRF  223 (517)
Q Consensus       154 ---------l~~~~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (517)
                               +++++.. +...|+||||+ +++|.+++.......+++...                            ..
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~----------------------------~~  163 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSV----------------------------LQ  163 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHH----------------------------HH
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHH----------------------------HH
Confidence                     5666655 78899999999 999999998753233333322                            37


Q ss_pred             HHHHHHHHHHHHHhcCceeccCCCCceEEccCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          224 YAAETLLALEYLHMMGIVYRDLKPENVLVREDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       224 ~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      ++.||+.||+|||++||+||||||+|||++.++  .+||+|||+++.+.......                         
T Consensus       164 i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~-------------------------  218 (352)
T 2jii_A          164 VACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHV-------------------------  218 (352)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCC-------------------------
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccc-------------------------
Confidence            789999999999999999999999999999998  99999999985543211000                         


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHH
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWW  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiW  381 (517)
                                                                    ...........||+.|+|||++.+..++.++|||
T Consensus       219 ----------------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  252 (352)
T 2jii_A          219 ----------------------------------------------AYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQ  252 (352)
T ss_dssp             ----------------------------------------------CCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHH
T ss_pred             ----------------------------------------------cccccccccccCCccccCHHHHccCCCCchhhHH
Confidence                                                          0001122345799999999999998999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCC-hHHHHHHH----hcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          382 TLGVFLYEMLYGTTPFKGEN-NEKTLINI----LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       382 SlGvil~elltG~~Pf~~~~-~~~~~~~i----~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||||++|||++|..||.+.. ....+...    ......++.....   ....+.++.+||.+||+.||++||++.
T Consensus       253 slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~  325 (352)
T 2jii_A          253 SLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGH---WIRPSETLQKYLKVVMALTYEEKPPYA  325 (352)
T ss_dssp             HHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSC---EECCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred             HHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccc---cCCCcHHHHHHHHHHHhCChhhCCCHH
Confidence            99999999999999998764 22222222    2222222111100   001123589999999999999999986

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=5.5e-44  Score=356.62  Aligned_cols=275  Identities=22%  Similarity=0.279  Sum_probs=199.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee-
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE-  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-  159 (517)
                      +..++|++++.||+|+||.||+|+...... .+++.||||++.....   ...+.+.+|+.+++.++||||+++++++. 
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   95 (327)
T 3lxl_A           20 FEERHLKYISQLGKGNFGSVELCRYDPLGD-NTGALVAVKQLQHSGP---DQQRDFQREIQILKALHSDFIVKYRGVSYG   95 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECTTSS-SCSEEEEEEEESSCCH---HHHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             hchhhhhhhhhccCCCCeEEEEEEeccCCC-CcceEEEEEEeccCCH---HHHHHHHHHHHHHHhcCCCceeEEEEEEec
Confidence            556899999999999999999999642211 2678999999976532   33456778999999999999999999886 


Q ss_pred             -cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          160 -ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       160 -~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                       +...+|+||||+++|+|.+++.... ..++..                            .+..++.||+.||+|||++
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~----------------------------~~~~i~~qi~~al~~lH~~  146 (327)
T 3lxl_A           96 PGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDAS----------------------------RLLLYSSQICKGMEYLGSR  146 (327)
T ss_dssp             SSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHH----------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEeecCCCCHHHHHHhcc-cCCCHH----------------------------HHHHHHHHHHHHHHHHHhC
Confidence             5667999999999999999987632 122222                            2246789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++........                                           
T Consensus       147 ~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------  183 (327)
T 3lxl_A          147 RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDY-------------------------------------------  183 (327)
T ss_dssp             TEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSE-------------------------------------------
T ss_pred             CccCCCCChhhEEECCCCCEEEcccccceecccCCcc-------------------------------------------
Confidence            9999999999999999999999999998543211100                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       184 --------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  231 (327)
T 3lxl_A          184 --------------------------------YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC  231 (327)
T ss_dssp             --------------------------------EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             --------------------------------ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence                                            011223468899999999998889999999999999999999999986


Q ss_pred             CCChH--------------HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          399 GENNE--------------KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       399 ~~~~~--------------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .....              .............+.. ..      .+..+.+||.+||+.||.+||++.+ +.+.|+..|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~li~~~l~~dP~~Rps~~e-ll~~L~~~~~  303 (327)
T 3lxl_A          232 SPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAP-PA------CPAEVHELMKLCWAPSPQDRPSFSA-LGPQLDMLWS  303 (327)
T ss_dssp             SHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCC-TT------CCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHC--
T ss_pred             cccchhhhhcccccccccHHHHHHHhhcccCCCCC-Cc------ccHHHHHHHHHHcCCChhhCcCHHH-HHHHHHHHHh
Confidence            54321              1122222222222211 11      1235899999999999999999962 2233555566


Q ss_pred             CCCCccc
Q 010140          465 KGINWAL  471 (517)
Q Consensus       465 ~~~~~~~  471 (517)
                      ....|..
T Consensus       304 ~~~~~~~  310 (327)
T 3lxl_A          304 GSRGCET  310 (327)
T ss_dssp             -------
T ss_pred             hhcCccc
Confidence            5555543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.5e-43  Score=352.10  Aligned_cols=261  Identities=23%  Similarity=0.258  Sum_probs=196.0

Q ss_pred             CcCCCCc-eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           80 RVGLDHF-RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y-~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .+..++| ++++.||+|+||.||+|..+.... .+++.||||++.....  ......+.+|+.+|+.++||||+++++++
T Consensus        26 ~~~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  102 (318)
T 3lxp_A           26 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTND-GTGEMVAVKALKADAG--PQHRSGWKQEIDILRTLYHEHIIKYKGCC  102 (318)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEECSCC---CCEEEEEEEECTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ceecHHHHhhhheecCCCCeEEEEEEEccCCC-CCCcEEEEEEeccccC--hHHHHHHHHHHHHHHhCCCcchhhEEEEE
Confidence            3344555 999999999999999987653222 2678999999976521  23455677899999999999999999999


Q ss_pred             ec--CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          159 EA--SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       159 ~~--~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .+  ...+|+||||+++|+|.+++....   ++...                            +..++.||+.||+|||
T Consensus       103 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~----------------------------~~~i~~~l~~~l~~LH  151 (318)
T 3lxp_A          103 EDAGAASLQLVMEYVPLGSLRDYLPRHS---IGLAQ----------------------------LLLFAQQICEGMAYLH  151 (318)
T ss_dssp             EETTTTEEEEEECCCTTCBHHHHGGGSC---CCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             ecCCCceEEEEEecccCCcHHHHHhhCC---CCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            87  467899999999999999986642   22222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||++.........                                         
T Consensus       152 ~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~-----------------------------------------  190 (318)
T 3lxp_A          152 AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY-----------------------------------------  190 (318)
T ss_dssp             HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSE-----------------------------------------
T ss_pred             hCCccCCCCchheEEEcCCCCEEECCccccccccccccc-----------------------------------------
Confidence            999999999999999999999999999998543321100                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       191 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p  236 (318)
T 3lxp_A          191 ----------------------------------YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDS  236 (318)
T ss_dssp             ----------------------------------EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCG
T ss_pred             ----------------------------------cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence                                              0112234588899999999988899999999999999999999999


Q ss_pred             CCCCChH--------------HHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENNE--------------KTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~~--------------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |......              ..+..........+... .      .+.++.+||.+||+.||++||++.    |+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~~l~~dP~~Rps~~----ell~  303 (318)
T 3lxp_A          237 SQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD-K------CPAEVYHLMKNCWETEASFRPTFE----NLIP  303 (318)
T ss_dssp             GGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCT-T------CCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             ccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCc-c------ccHHHHHHHHHHcCCCcccCcCHH----HHHH
Confidence            9753221              11122222222222111 1      123589999999999999999997    6653

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2.2e-44  Score=362.33  Aligned_cols=268  Identities=19%  Similarity=0.182  Sum_probs=187.2

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH--------HHHHHhHHHHHHHHHHhcCCCCcc
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA--------IRKKLHRADMEKVILTMLDHPFLP  152 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~--------~~~~~~~~~~E~~il~~l~HpnIv  152 (517)
                      +..++|++++.||+|+||.||+|++....  ..+..+|||++......        .......+.+|+.+++.++||||+
T Consensus        34 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~  111 (345)
T 2v62_A           34 MEGNQWVLGKKIGSGGFGLIYLAFPTNKP--EKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIP  111 (345)
T ss_dssp             TTSCEEEEEEEC------CEEEEEESSSC--GGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCC
T ss_pred             ccCceEEEEeeEeecCCeEEEEEEecCCC--CccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcc
Confidence            34578999999999999999999987522  14678999998654211        111223456788999999999999


Q ss_pred             ceeeeeec----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHH
Q 010140          153 TLYAEFEA----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET  228 (517)
Q Consensus       153 ~l~~~~~~----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi  228 (517)
                      ++++++..    ....|+||||| |++|.+++....  .++..                            .++.++.||
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~----------------------------~~~~i~~qi  160 (345)
T 2v62_A          112 LFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKS----------------------------TVLQLGIRM  160 (345)
T ss_dssp             CEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHH----------------------------HHHHHHHHH
T ss_pred             eeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHH----------------------------HHHHHHHHH
Confidence            99999987    78899999999 999999876542  22222                            224788999


Q ss_pred             HHHHHHHHhcCceeccCCCCceEEccCC--cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccc
Q 010140          229 LLALEYLHMMGIVYRDLKPENVLVREDG--HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSC  306 (517)
Q Consensus       229 ~~aL~yLH~~~iiHrDLKp~NILl~~~~--~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (517)
                      +.||+|||++||+||||||+|||++.++  .+||+|||+++.+.......                              
T Consensus       161 ~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~------------------------------  210 (345)
T 2v62_A          161 LDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHK------------------------------  210 (345)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCC------------------------------
T ss_pred             HHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccc------------------------------
Confidence            9999999999999999999999999877  99999999986543211000                              


Q ss_pred             ccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHH
Q 010140          307 FSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVF  386 (517)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvi  386 (517)
                                                               ...........||+.|+|||++.+..++.++|||||||+
T Consensus       211 -----------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  249 (345)
T 2v62_A          211 -----------------------------------------QYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYC  249 (345)
T ss_dssp             -----------------------------------------CCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHH
T ss_pred             -----------------------------------------cchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHH
Confidence                                                     000111234579999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCC--ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          387 LYEMLYGTTPFKGE--NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       387 l~elltG~~Pf~~~--~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +|||++|..||.+.  ................+............+.++.+||.+||..||++||++.
T Consensus       250 l~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  317 (345)
T 2v62_A          250 MLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQ  317 (345)
T ss_dssp             HHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred             HHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHH
Confidence            99999999999653  2222211111111111110000000001223599999999999999999996

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-43  Score=350.57  Aligned_cols=256  Identities=22%  Similarity=0.313  Sum_probs=187.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh--cCCCCccceeeeeec
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM--LDHPFLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~  160 (517)
                      .++|++++.||+|+||.||+|+++       ++.||||++......      ....|.+++..  ++||||+++++++..
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~-------~~~vavK~~~~~~~~------~~~~e~~~~~~~~~~h~~i~~~~~~~~~  102 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR-------GEKVAVKVFFTTEEA------SWFRETEIYQTVLMRHENILGFIAADIK  102 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET-------TEEEEEEEEEGGGHH------HHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC-------CceEEEEEEeccccc------hhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence            367999999999999999999875       478999998654321      22235555554  499999999999987


Q ss_pred             C----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          161 S----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       161 ~----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      .    ..+|+|||||++|+|.+++...   .++...                            +..++.||+.||+|||
T Consensus       103 ~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~----------------------------~~~i~~~i~~~l~~lH  151 (337)
T 3mdy_A          103 GTGSWTQLYLITDYHENGSLYDYLKST---TLDAKS----------------------------MLKLAYSSVSGLCHLH  151 (337)
T ss_dssp             SCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            6    7899999999999999998653   232222                            2367899999999999


Q ss_pred             hc--------CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          237 MM--------GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       237 ~~--------~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      ++        ||+||||||+|||++.++.+||+|||+++.+......                                 
T Consensus       152 ~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~---------------------------------  198 (337)
T 3mdy_A          152 TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNE---------------------------------  198 (337)
T ss_dssp             SCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC--------------------------------------
T ss_pred             HhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeecccccc---------------------------------
Confidence            99        9999999999999999999999999998543311100                                 


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCcc------chHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSA------VDWWT  382 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~------~DiWS  382 (517)
                                                               ........+||+.|+|||++.+..++..      +||||
T Consensus       199 -----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diws  237 (337)
T 3mdy_A          199 -----------------------------------------VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYS  237 (337)
T ss_dssp             ---------------------------------------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHH
T ss_pred             -----------------------------------------ccCCCCCCccCcceeChhhcccccCCccccCccccchHH
Confidence                                                     0011224579999999999988776655      99999


Q ss_pred             HHHHHHHHhhC----------CCCCCCCC----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccc
Q 010140          383 LGVFLYEMLYG----------TTPFKGEN----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       383 lGvil~elltG----------~~Pf~~~~----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  448 (517)
                      |||++|||++|          ..||....    ...............+..... ........++.+||.+||+.||.+|
T Consensus       238 lG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~R  316 (337)
T 3mdy_A          238 FGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNR-WSSDECLRQMGKLMTECWAHNPASR  316 (337)
T ss_dssp             HHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHHHHHHSCSSGGGS
T ss_pred             HHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCcccccc-chhhHHHHHHHHHHHHhhhhChhhC
Confidence            99999999999          77776532    223333333222211111110 1111344569999999999999999


Q ss_pred             cCCCCChHHhhcC
Q 010140          449 IGSLKGSVEIKRH  461 (517)
Q Consensus       449 ~t~~~~~~ell~h  461 (517)
                      |++.    |+++|
T Consensus       317 ps~~----ell~~  325 (337)
T 3mdy_A          317 LTAL----RVKKT  325 (337)
T ss_dssp             CCHH----HHHHH
T ss_pred             CCHH----HHHHH
Confidence            9997    77664

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=380.06  Aligned_cols=266  Identities=23%  Similarity=0.248  Sum_probs=202.1

Q ss_pred             CcCCCCceEEe-eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           80 RVGLDHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~-~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      .+..+++.+.+ .||+|+||.||+|.++...   .+..||||+++....  ....+.+.+|+.+|+.++|||||++++++
T Consensus       331 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~---~~~~vAvK~~~~~~~--~~~~~~~~~E~~il~~l~hpniv~l~~~~  405 (613)
T 2ozo_A          331 FLKRDNLLIADIELGCGNFGSVRQGVYRMRK---KQIDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVC  405 (613)
T ss_dssp             BCCTTSEEEEEEEEEECSSSEEEEEEEECSS---CEEEEEEEECCCCCS--STTHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             eccccceeEcCcEEecCCCcEEEEEEEecCC---CcEEEEEEEcCCCCC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEe
Confidence            34556777777 8999999999999887421   356799999975421  12345677899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .. +.+|||||||++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus       406 ~~-~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~----------------------------~~~i~~qi~~~L~~LH~~  455 (613)
T 2ozo_A          406 QA-EALMLVMEMAGGGPLHKFLVGKR-EEIPVSN----------------------------VAELLHQVSMGMKYLEEK  455 (613)
T ss_dssp             ES-SSEEEEEECCTTCBHHHHHTTCT-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             cc-CCeEEEEEeCCCCcHHHHHhhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            76 56999999999999999886532 2233222                            237789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+||||+.++.+||+|||+++.+......                                           
T Consensus       456 ~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~-------------------------------------------  492 (613)
T 2ozo_A          456 NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY-------------------------------------------  492 (613)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC------------------------------------------------
T ss_pred             CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce-------------------------------------------
Confidence            9999999999999999999999999998543211000                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........+|+.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       493 --------------------------------~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf  540 (613)
T 2ozo_A          493 --------------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY  540 (613)
T ss_dssp             -----------------------------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                                            000112246789999999998899999999999999999998 99999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      .+.+..+.+..+..+.......  .      .+.++.+||.+||+.||++||++. .+.+.|++.|+
T Consensus       541 ~~~~~~~~~~~i~~~~~~~~p~--~------~~~~l~~li~~cl~~dP~~RPs~~-~l~~~L~~~~~  598 (613)
T 2ozo_A          541 KKMKGPEVMAFIEQGKRMECPP--E------CPPELYALMSDCWIYKWEDRPDFL-TVEQRMRACYY  598 (613)
T ss_dssp             TTCCSHHHHHHHHTTCCCCCCT--T------CCHHHHHHHHHTTCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCC--c------CCHHHHHHHHHHcCCChhHCcCHH-HHHHHHHHHHH
Confidence            9998888888877654221111  1      123589999999999999999996 22233454443

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6.9e-44  Score=354.10  Aligned_cols=264  Identities=22%  Similarity=0.338  Sum_probs=193.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee-
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE-  159 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-  159 (517)
                      +..++|++++.||+|+||.||+|++..     +++.||||++.....   .....+.+|+.+++.++||||+++++++. 
T Consensus        26 i~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   97 (317)
T 2buj_A           26 IDNKHYLFIQKLGEGGFSYVDLVEGLH-----DGHFYALKRILCHEQ---QDREEAQREADMHRLFNHPNILRLVAYCLR   97 (317)
T ss_dssp             ETTEEEEEEEEEEC--CEEEEEEEETT-----TCCEEEEEEEEESSH---HHHHHHHHHHHHHHTCCCTTBCCCCEEEEE
T ss_pred             ECCeEEEEEEEecCCCCeEEEEEEecC-----CCcEEEEEEEecCCH---HHHHHHHHHHHHHhhcCCCCeeeEEEEEEe
Confidence            445789999999999999999999876     678999998865322   33456677999999999999999999986 


Q ss_pred             ---cCceeEEEEEecCCCchhHHHHhCCC--CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          160 ---ASHYSCLVMEYCPGGDLYAARQRQPG--KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       160 ---~~~~~~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                         .....|+||||+++|+|.+++.....  ..++..                            .+..++.||+.||+|
T Consensus        98 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~~~i~~qi~~~L~~  149 (317)
T 2buj_A           98 ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTED----------------------------QILWLLLGICRGLEA  149 (317)
T ss_dssp             EETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             ccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHH----------------------------HHHHHHHHHHHHHHH
Confidence               34578999999999999998876321  222222                            224678999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.+||+|||++...........                                     
T Consensus       150 LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~-------------------------------------  192 (317)
T 2buj_A          150 IHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSR-------------------------------------  192 (317)
T ss_dssp             HHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHH-------------------------------------
T ss_pred             HHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhccccccccc-------------------------------------
Confidence            9999999999999999999999999999999854321000000                                     


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC---CCccchHHHHHHHHHHHh
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG---HGSAVDWWTLGVFLYEML  391 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~---~~~~~DiWSlGvil~ell  391 (517)
                                                      ............||+.|+|||++.+..   ++.++|||||||++|+|+
T Consensus       193 --------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~  240 (317)
T 2buj_A          193 --------------------------------QALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMM  240 (317)
T ss_dssp             --------------------------------HHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHH
T ss_pred             --------------------------------ccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHH
Confidence                                            000000012235899999999998654   688999999999999999


Q ss_pred             hCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          392 YGTTPFKGEN--NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       392 tG~~Pf~~~~--~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +|..||....  .......+ ......+....       ....+.+||.+||+.||.+||++.    ++++|
T Consensus       241 ~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~l~~li~~~l~~dp~~Rps~~----~ll~~  300 (317)
T 2buj_A          241 FGEGPYDMVFQKGDSVALAV-QNQLSIPQSPR-------HSSALWQLLNSMMTVDPHQRPHIP----LLLSQ  300 (317)
T ss_dssp             HSSCTTHHHHHTTSCHHHHH-HCC--CCCCTT-------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             hCCCChhhhhcccchhhHHh-hccCCCCcccc-------CCHHHHHHHHHHhhcChhhCCCHH----HHHHH
Confidence            9999996421  11111222 22222222111       122589999999999999999997    77775

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=4.7e-44  Score=382.48  Aligned_cols=268  Identities=24%  Similarity=0.341  Sum_probs=199.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .++|++.+.||+|+||.||+|.++.     +++.||||++.....  .....++.+|+.+|+.++||||+++++++..  
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~-----tg~~VAVKvi~~~~~--~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~   85 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQD-----TGEQVAIKQCRQELS--PKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQ   85 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTT-----TTCCEEECCCCSCCC--HHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTC
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECC-----CCcEEEEEEecccCC--HHHHHHHHHHHHHHHhCCCCCCCceeeeecccc
Confidence            4789999999999999999998876     678899999875421  2334567789999999999999999998765  


Q ss_pred             ----CceeEEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          161 ----SHYSCLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       161 ----~~~~~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                          ++..|+|||||+||+|.+++..... ..++....                            +.++.||+.||+||
T Consensus        86 ~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i----------------------------~~I~~QLl~aL~yL  137 (676)
T 3qa8_A           86 KLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPI----------------------------RTLLSDISSALRYL  137 (676)
T ss_dssp             CCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHH----------------------------HHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHH----------------------------HHHHHHHHHHHHHH
Confidence                7788999999999999999876432 12333322                            36789999999999


Q ss_pred             HhcCceeccCCCCceEEccCCc---EEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGH---IMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~---vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      |++||+||||||+|||++.++.   +||+|||++......                                        
T Consensus       138 Hs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~----------------------------------------  177 (676)
T 3qa8_A          138 HENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQG----------------------------------------  177 (676)
T ss_dssp             HHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSC----------------------------------------
T ss_pred             HHCCCccCCCCHHHeEeecCCCceeEEEcccccccccccc----------------------------------------
Confidence            9999999999999999997764   999999998433210                                        


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                             .......||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       178 ---------------------------------------~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLlt  218 (676)
T 3qa8_A          178 ---------------------------------------ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECIT  218 (676)
T ss_dssp             ---------------------------------------CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHH
Confidence                                                   11233579999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHH--------------hcCCCCCCCCCC-CCchhHHhhhhHHHHHHHhccCCcccccCCCCChHH
Q 010140          393 GTTPFKGENNEKTLINI--------------LKKPLTFPRIGV-SSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVE  457 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i--------------~~~~~~~p~~~~-~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~e  457 (517)
                      |..||.+..........              ..+...+..... +..-.......+.+||.+||..||++|||+.    |
T Consensus       219 G~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~----e  294 (676)
T 3qa8_A          219 GFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP----Q  294 (676)
T ss_dssp             SCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCT----T
T ss_pred             CCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHH----H
Confidence            99999765432211100              011111111100 0000112345689999999999999999998    9


Q ss_pred             hhcCCCcCCCC
Q 010140          458 IKRHEFFKGIN  468 (517)
Q Consensus       458 ll~hp~f~~~~  468 (517)
                      +++||||+.++
T Consensus       295 lL~hp~F~~l~  305 (676)
T 3qa8_A          295 NPNVGCFQALD  305 (676)
T ss_dssp             CCCCTTHHHHH
T ss_pred             HhcCHHHHHHH
Confidence            99999998643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=4.1e-43  Score=379.47  Aligned_cols=251  Identities=22%  Similarity=0.243  Sum_probs=194.3

Q ss_pred             CCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           84 DHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      ..+.+. ++||+|+||.||+|.+...   ..++.||||+++..... ......+.+|+.+|++++|||||++++++.. +
T Consensus       368 ~~~~l~~~~LG~G~fG~Vy~~~~~~~---~~~~~vAvK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~  442 (635)
T 4fl3_A          368 KLLTLEDKELGSGNFGTVKKGYYQMK---KVVKTVAVKILKNEAND-PALKDELLAEANVMQQLDNPYIVRMIGICEA-E  442 (635)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECS---SCEEEEEEEEECGGGGC-GGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-S
T ss_pred             hhccccCCEeccCCCEEEEEEEEcCC---CcceEEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-C
Confidence            344444 4899999999999976542   14678999999765321 2334667889999999999999999999975 4


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|||||||++|+|.+++...  ..+....                            +..|+.||+.||+|||++||||
T Consensus       443 ~~~lv~E~~~~g~L~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~~L~yLH~~~iiH  492 (635)
T 4fl3_A          443 SWMLVMEMAELGPLNKYLQQN--RHVKDKN----------------------------IIELVHQVSMGMKYLEESNFVH  492 (635)
T ss_dssp             SEEEEEECCTTEEHHHHHHHC--TTCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEEEccCCCCHHHHHhhC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCEeC
Confidence            589999999999999998764  2232222                            2377899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||||+.++.+||+|||+++.+......                                               
T Consensus       493 rDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~-----------------------------------------------  525 (635)
T 4fl3_A          493 RDLAARNVLLVTQHYAKISDFGLSKALRADENY-----------------------------------------------  525 (635)
T ss_dssp             SCCSGGGEEEEETTEEEECCTTHHHHTTC---------------------------------------------------
T ss_pred             CCCChHhEEEeCCCCEEEEEcCCccccccCccc-----------------------------------------------
Confidence            999999999999999999999998543311100                                               


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+.+
T Consensus       526 ----------------------------~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  577 (635)
T 4fl3_A          526 ----------------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  577 (635)
T ss_dssp             -------------------------------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ----------------------------cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                                        001122357889999999999899999999999999999998 999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ..+....+..+.......  .      .+.++.+||.+||+.||++||++.
T Consensus       578 ~~~~~~~i~~~~~~~~p~--~------~~~~l~~li~~cl~~dP~~RPs~~  620 (635)
T 4fl3_A          578 GSEVTAMLEKGERMGCPA--G------CPREMYDLMNLCWTYDVENRPGFA  620 (635)
T ss_dssp             HHHHHHHHHTTCCCCCCT--T------CCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHHHHHcCCCCCCCC--C------CCHHHHHHHHHHcCCCHhHCcCHH
Confidence            888887777654321111  1      123589999999999999999997

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=352.16  Aligned_cols=263  Identities=23%  Similarity=0.308  Sum_probs=176.9

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeee-
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEF-  158 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~-  158 (517)
                      +...+|++.+.||+|+||.||+|++..     +++.||||++.....   .....+.+|+.+++++. ||||+++++++ 
T Consensus        25 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~   96 (337)
T 3ll6_A           25 LGELRLRVRRVLAEGGFAFVYEAQDVG-----SGREYALKRLLSNEE---EKNRAIIQEVCFMKKLSGHPNIVQFCSAAS   96 (337)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEEETT-----TCCEEEEEEEEESSH---HHHHHHHHHHHHHHHHTTSTTBCCEEEEEE
T ss_pred             ccCceEEEEEEEccCCceEEEEEEECC-----CCcEEEEEEecCCch---HHHHHHHHHHHHHHHhccCCChhhcccccc
Confidence            445689999999999999999999876     678999998855432   23445677999999995 99999999998 


Q ss_pred             -------ecCceeEEEEEecCCCchhHHHHhCC-CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          159 -------EASHYSCLVMEYCPGGDLYAARQRQP-GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       159 -------~~~~~~~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                             .....+|+||||+ +|+|.+++.... ...++...                            +..++.||+.
T Consensus        97 ~~~~~~~~~~~~~~lv~e~~-~g~L~~~l~~~~~~~~~~~~~----------------------------~~~i~~qi~~  147 (337)
T 3ll6_A           97 IGKEESDTGQAEFLLLTELC-KGQLVEFLKKMESRGPLSCDT----------------------------VLKIFYQTCR  147 (337)
T ss_dssp             ECTTTSTTSSEEEEEEEECC-SEEHHHHHHHHHTTCSCCHHH----------------------------HHHHHHHHHH
T ss_pred             ccccccccCCceEEEEEEec-CCCHHHHHHHhhccCCCCHHH----------------------------HHHHHHHHHH
Confidence                   3455689999999 579998886521 12233222                            2477899999


Q ss_pred             HHHHHHhcC--ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccc
Q 010140          231 ALEYLHMMG--IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFS  308 (517)
Q Consensus       231 aL~yLH~~~--iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (517)
                      ||+|||++|  |+||||||+|||++.++.+||+|||+++............                             
T Consensus       148 ~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~-----------------------------  198 (337)
T 3ll6_A          148 AVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSA-----------------------------  198 (337)
T ss_dssp             HHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-----------------------------------
T ss_pred             HHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccc-----------------------------
Confidence            999999999  9999999999999999999999999986543221110000                             


Q ss_pred             ccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh---cCCCCCccchHHHHHH
Q 010140          309 SVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI---SGQGHGSAVDWWTLGV  385 (517)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l---~~~~~~~~~DiWSlGv  385 (517)
                                                           .............||+.|+|||++   .+..++.++|||||||
T Consensus       199 -------------------------------------~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~  241 (337)
T 3ll6_A          199 -------------------------------------QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGC  241 (337)
T ss_dssp             --------------------------------------------------------------CCTTSCSSHHHHHHHHHH
T ss_pred             -------------------------------------cccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHH
Confidence                                                 000000112245699999999998   5566899999999999


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          386 FLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       386 il~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ++|+|++|..||.+........    .....+.....       ...+.+||.+||+.||.+||++.    |+++|
T Consensus       242 il~el~~g~~p~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~li~~~l~~~p~~Rps~~----e~l~~  302 (337)
T 3ll6_A          242 ILYLLCFRQHPFEDGAKLRIVN----GKYSIPPHDTQ-------YTVFHSLIRAMLQVNPEERLSIA----EVVHQ  302 (337)
T ss_dssp             HHHHHHHSSCCC----------------CCCCTTCCS-------SGGGHHHHHHHSCSSGGGSCCHH----HHHHH
T ss_pred             HHHHHHhCCCCCcchhHHHhhc----CcccCCccccc-------chHHHHHHHHHccCChhhCcCHH----HHHHH
Confidence            9999999999998765443322    22222221111       12488999999999999999997    78776

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=4.7e-43  Score=344.44  Aligned_cols=255  Identities=20%  Similarity=0.254  Sum_probs=191.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee-ecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF-EAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-~~~  161 (517)
                      .++|++++.||+|+||.||+|++..     +++.||||++....     ....+.+|+.+++.++|++++..+..+ ..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~-----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~   77 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIA-----AGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEG   77 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETT-----TTEEEEEEEEESCS-----SCCHHHHHHHHHHHHTTSTTCCCEEEEEEET
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcC-----CCcEEEEEEecCCc-----chhHHHHHHHHHHHhhcCCCCCccccccCCC
Confidence            4789999999999999999999876     67899999986542     234567799999999988866666554 677


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|+||||+ +++|.+++.... ..++...                            +..++.||+.||+|||++||+
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~~l~~lH~~~iv  127 (296)
T 3uzp_A           78 DYNVMVMELL-GPSLEDLFNFCS-RKFSLKT----------------------------VLLLADQMISRIEYIHSKNFI  127 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEE
T ss_pred             CceEEEEEec-CCCHHHHHHhhc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCee
Confidence            8889999999 999999987532 2233322                            236789999999999999999


Q ss_pred             eccCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          242 YRDLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       242 HrDLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||||||+|||+   +.++.+||+|||+++.........                                          
T Consensus       128 H~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~------------------------------------------  165 (296)
T 3uzp_A          128 HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ------------------------------------------  165 (296)
T ss_dssp             CSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC------------------------------------------
T ss_pred             eCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccc------------------------------------------
Confidence            99999999999   488899999999985433211000                                          


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                   ...........||+.|+|||++.+..++.++|||||||++|+|++|+.||.
T Consensus       166 -----------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  216 (296)
T 3uzp_A          166 -----------------------------HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  216 (296)
T ss_dssp             -----------------------------BCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             -----------------------------ccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence                                         000111234579999999999999999999999999999999999999998


Q ss_pred             CCCh---HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          399 GENN---EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       399 ~~~~---~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +...   .+.+..+.......+.....    ...+.++.+||.+||+.||.+||++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~  269 (296)
T 3uzp_A          217 GLKAATKRQKYERISEKKMSTPIEVLC----KGYPSEFATYLNFCRSLRFDDKPDYS  269 (296)
T ss_dssp             SCCCSSSSSHHHHHHHHHHHSCHHHHT----TTSCHHHHHHHHHHHTSCTTCCCCHH
T ss_pred             CcCchhhhhhhhhhcccccCCchHHHH----hhCCHHHHHHHHHHHhcCcCcCCCHH
Confidence            7432   23333333222111100000    01123589999999999999999986

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=3.2e-43  Score=346.67  Aligned_cols=239  Identities=24%  Similarity=0.381  Sum_probs=181.3

Q ss_pred             CCCceEE-eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHH-HhcCCCCccceeeeeec
Q 010140           83 LDHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL-TMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~-~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~~~  160 (517)
                      .++|.++ +.||+|+||.||+|.++.     +++.||||++....        ...+|+.++ +.++||||+++++++..
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~-----~~~~vaiK~~~~~~--------~~~~e~~~~~~~~~h~~i~~~~~~~~~   82 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKR-----TQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYEN   82 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcC-----CCcEEEEEEecccH--------HHHHHHHHHHHhccCCCchhHHhhhhh
Confidence            4678888 789999999999999876     67899999996532        334588877 55699999999999976


Q ss_pred             ----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          161 ----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       161 ----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                          ...+|+||||++||+|.+++.......++....                            +.++.||+.||+|||
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~~l~~lH  134 (299)
T 3m2w_A           83 LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREA----------------------------SEIMKSIGEAIQYLH  134 (299)
T ss_dssp             EETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             hcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence                778999999999999999998764444444333                            367899999999999


Q ss_pred             hcCceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      ++||+||||||+|||++.   ++.+||+|||++....                                           
T Consensus       135 ~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-------------------------------------------  171 (299)
T 3m2w_A          135 SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-------------------------------------------  171 (299)
T ss_dssp             HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT-------------------------------------------
T ss_pred             hCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc-------------------------------------------
Confidence            999999999999999998   7899999999872210                                           


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                                               +..++.++|||||||++|+|++|
T Consensus       172 ---------------------------------------------------------~~~~~~~~DiwslG~il~el~tg  194 (299)
T 3m2w_A          172 ---------------------------------------------------------GEKYDKSCDMWSLGVIMYILLCG  194 (299)
T ss_dssp             ---------------------------------------------------------TCGGGGHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------------------------cccCCchhhHHHHHHHHHHHHHC
Confidence                                                                     13367899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      ..||.+.........+... ................+.++.+||.+||+.||.+||++.    |+++||||++.
T Consensus       195 ~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~----e~l~hp~~~~~  263 (299)
T 3m2w_A          195 YPPFYSNHGLAISPGMKTR-IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT----EFMNHPWIMQS  263 (299)
T ss_dssp             SCSCCC-------CCSCCS-SCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHH----HHHTSHHHHTG
T ss_pred             CCCCCCCcchhhhHHHHHH-HhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHH----HHhcChhhccc
Confidence            9999876544322111111 111111111000012334699999999999999999998    99999999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=3.7e-43  Score=367.31  Aligned_cols=278  Identities=19%  Similarity=0.244  Sum_probs=206.7

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC-CCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH-PFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~  160 (517)
                      ..++|+++++||+|+||.||+|++..     +++.||||++...     .....+..|+.+++.+.| ++|+.+..++..
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~~-----~~~~vAvK~~~~~-----~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~   74 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNIQ-----TNEEVAIKLENVK-----TKHPQLLYESKIYRILQGGTGIPNVRWFGVE   74 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEETT-----TCCEEEEEEEETT-----CSSCCHHHHHHHHHHTTTSTTCCCEEEEEEE
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEECC-----CCcEEEEEEeccc-----cccHHHHHHHHHHHHhcCCCCCCeEEEEEee
Confidence            34789999999999999999999876     6789999987654     223456679999999976 556666667778


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+..||||||+ +++|.+++.... ..+.+..                            ++.|+.||+.||+|||++||
T Consensus        75 ~~~~~lvme~~-g~sL~~ll~~~~-~~l~~~~----------------------------~~~i~~qi~~aL~yLH~~gI  124 (483)
T 3sv0_A           75 GDYNVLVMDLL-GPSLEDLFNFCS-RKLSLKT----------------------------VLMLADQMINRVEFVHSKSF  124 (483)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEECC-CCCHHHHHHhhc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHHCCE
Confidence            88999999999 999999987532 2233322                            23788999999999999999


Q ss_pred             eeccCCCCceEE---ccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          241 VYRDLKPENVLV---REDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       241 iHrDLKp~NILl---~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      |||||||+||||   +.++.+||+|||+++.+.......                                         
T Consensus       125 vHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~-----------------------------------------  163 (483)
T 3sv0_A          125 LHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ-----------------------------------------  163 (483)
T ss_dssp             ECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC-----------------------------------------
T ss_pred             eecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc-----------------------------------------
Confidence            999999999999   688999999999986543211000                                         


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                    ..........+||+.|+|||++.+..++.++|||||||+||||++|+.||
T Consensus       164 ------------------------------~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf  213 (483)
T 3sv0_A          164 ------------------------------HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPW  213 (483)
T ss_dssp             ------------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------------------------------ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence                                          00011223567999999999999999999999999999999999999999


Q ss_pred             CCCCh---HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCCh---HH---hhcCCCcCCCC
Q 010140          398 KGENN---EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGS---VE---IKRHEFFKGIN  468 (517)
Q Consensus       398 ~~~~~---~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~---~e---ll~hp~f~~~~  468 (517)
                      .+...   .+.+..+...........    .....+.++.+||.+||+.||++||++.+..   .+   .+.++|+..+|
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~d  289 (483)
T 3sv0_A          214 QGLKAGTKKQKYEKISEKKVATSIEA----LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFD  289 (483)
T ss_dssp             SSCCCSSHHHHHHHHHHHHHHSCHHH----HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCH
T ss_pred             ccccchhHHHHHHHHhhccccccHHH----HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcC
Confidence            87543   333333332211100000    0001123589999999999999999986221   12   23589999999


Q ss_pred             cccccC
Q 010140          469 WALIRS  474 (517)
Q Consensus       469 ~~~~~~  474 (517)
                      |+.++.
T Consensus       290 W~~~~~  295 (483)
T 3sv0_A          290 WTILKY  295 (483)
T ss_dssp             HHHHTC
T ss_pred             chhhcc
Confidence            997744

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.1e-42  Score=375.27  Aligned_cols=258  Identities=26%  Similarity=0.349  Sum_probs=202.1

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|++.....  ....||||++.....  ....+.+.+|+.+|+.++||||+++++++
T Consensus       385 ~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~--~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~~~~  460 (656)
T 2j0j_A          385 YEIQRERIELGRCIGEGQFGDVHQGIYMSPEN--PAMAVAIKTCKNCTS--DSVREKFLQEALTMRQFDHPHIVKLIGVI  460 (656)
T ss_dssp             TBCCGGGEEEEEEEECCSSCCEEEEEECCSSS--CCEEEEEEECSSTTC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccccEEEeeEEeeCCCEEEEEEEEecCCC--ccEEEEEEEecccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            44566889999999999999999999875322  456899999865321  23345677899999999999999999998


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      . ++..|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||++
T Consensus       461 ~-~~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~----------------------------~~~i~~qi~~aL~~LH~~  510 (656)
T 2j0j_A          461 T-ENPVWIIMELCTLGELRSFLQVRK-FSLDLAS----------------------------LILYAYQLSTALAYLESK  510 (656)
T ss_dssp             C-SSSCEEEEECCTTCBHHHHHHHTT-TTCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             e-cCceEEEEEcCCCCcHHHHHHhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHHhC
Confidence            5 456899999999999999987642 1222221                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      ||+||||||+|||++.++.+||+|||+++......                                             
T Consensus       511 givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~---------------------------------------------  545 (656)
T 2j0j_A          511 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST---------------------------------------------  545 (656)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-----------------------------------------------
T ss_pred             CccccccchHhEEEeCCCCEEEEecCCCeecCCCc---------------------------------------------
Confidence            99999999999999999999999999985432100                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       546 --------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf  593 (656)
T 2j0j_A          546 --------------------------------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF  593 (656)
T ss_dssp             ----------------------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCC
Confidence                                            001122357889999999998899999999999999999997 99999


Q ss_pred             CCCChHHHHHHHhcCCCC-CCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          398 KGENNEKTLINILKKPLT-FPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      .+....+.+..+...... .+.   .      .+..+.+||.+||+.||.+||++.    |+++
T Consensus       594 ~~~~~~~~~~~i~~~~~~~~~~---~------~~~~l~~li~~~l~~dP~~RPs~~----el~~  644 (656)
T 2j0j_A          594 QGVKNNDVIGRIENGERLPMPP---N------CPPTLYSLMTKCWAYDPSRRPRFT----ELKA  644 (656)
T ss_dssp             TTCCHHHHHHHHHHTCCCCCCT---T------CCHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCc---c------ccHHHHHHHHHHcCCChhHCcCHH----HHHH
Confidence            999888888777665422 221   1      123589999999999999999997    6554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=9.8e-44  Score=366.14  Aligned_cols=259  Identities=14%  Similarity=0.111  Sum_probs=188.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC-CCccce-------
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH-PFLPTL-------  154 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l-------  154 (517)
                      ...|.+.+.||+|+||+||+|++..     +++.||||++...........+.+.+|+.+++.+.| +|+..+       
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~-----~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~  151 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQE-----TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI  151 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBC
T ss_pred             ceeEEEecccccCCCEEEEEEEecC-----CCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccc
Confidence            3568999999999999999999886     678999999874333333446677889999999977 322111       


Q ss_pred             --------------eeeeec-----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccc
Q 010140          155 --------------YAEFEA-----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDV  215 (517)
Q Consensus       155 --------------~~~~~~-----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  215 (517)
                                    ..++..     ...++++|+++ +++|.+++.......-                       ....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~-----------------------~~~~  207 (413)
T 3dzo_A          152 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSS-----------------------THKS  207 (413)
T ss_dssp             CCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTT-----------------------TSHH
T ss_pred             cchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccc-----------------------cCCC
Confidence                          111111     22467888877 7899988853210000                       0001


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCC
Q 010140          216 TLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPS  295 (517)
Q Consensus       216 ~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (517)
                      ........++.||+.||+|||++|||||||||+||||+.++.+||+|||+++....                        
T Consensus       208 l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~------------------------  263 (413)
T 3dzo_A          208 LVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA------------------------  263 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETTE------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccceeecCC------------------------
Confidence            11222346779999999999999999999999999999999999999999843221                        


Q ss_pred             CCCCCCCccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhh------
Q 010140          296 CATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI------  369 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l------  369 (517)
                                                                               .....+| +.|+|||++      
T Consensus       264 ---------------------------------------------------------~~~~~~g-~~y~aPE~~~~~~~~  285 (413)
T 3dzo_A          264 ---------------------------------------------------------SAVSPIG-RGFAPPETTAERMLP  285 (413)
T ss_dssp             ---------------------------------------------------------EECCCCC-TTTCCHHHHHHHTST
T ss_pred             ---------------------------------------------------------ccccCCC-CceeCchhhhccccc
Confidence                                                                     1233468 999999999      


Q ss_pred             ----cCCCCCccchHHHHHHHHHHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCc
Q 010140          370 ----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNP  445 (517)
Q Consensus       370 ----~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP  445 (517)
                          .+..++.++|||||||++|||++|+.||.+.+..+....+.......             +.++.+||.+||+.||
T Consensus       286 ~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-------------~~~~~~li~~~l~~dP  352 (413)
T 3dzo_A          286 FGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRSCKNI-------------PQPVRALLEGFLRYPK  352 (413)
T ss_dssp             TGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCSGGGGSSCCCC-------------CHHHHHHHHHHTCSSG
T ss_pred             cccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhHHHHHhhcccC-------------CHHHHHHHHHHccCCh
Confidence                55558889999999999999999999998876554444333322211             1258999999999999


Q ss_pred             ccccCCCCChHHhhcCCCcCCCCc
Q 010140          446 KKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       446 ~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                      ++||++.    ++++||||+.+..
T Consensus       353 ~~Rpt~~----~~l~~~~~~~~~~  372 (413)
T 3dzo_A          353 EDRLLPL----QAMETPEYEQLRT  372 (413)
T ss_dssp             GGSCCHH----HHTTSHHHHHHHH
T ss_pred             hhCcCHH----HHHhCHHHHHHHH
Confidence            9999998    9999999987643

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3.1e-43  Score=349.59  Aligned_cols=261  Identities=19%  Similarity=0.253  Sum_probs=199.0

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..+.+..++|++.+.||+|+||.||+|++++        .+|+|++...... ......+.+|+.+++.++||||+++++
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--------~~avk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~   96 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--------EVAIRLIDIERDN-EDQLKAFKREVMAYRQTRHENVVLFMG   96 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--------SEEEEECCCCSCC-CCCCCCCCTTGGGGTTCCCTTBCCCCE
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--------eEEEEEeecCCCC-HHHHHHHHHHHHHHhcCCCCCEeEEEE
Confidence            3466778999999999999999999998764        3899998653211 122345566999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+.+.+|+||||++|++|.+++.... ..++...                            +..++.||+.||+|||
T Consensus        97 ~~~~~~~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~al~~lH  147 (319)
T 2y4i_B           97 ACMSPPHLAIITSLCKGRTLYSVVRDAK-IVLDVNK----------------------------TRQIAQEIVKGMGYLH  147 (319)
T ss_dssp             EEECSSCEEEECBCCCSEEHHHHTTSSC-CCCCSHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEecCCceEEEeecccCCcHHHHHHhcC-CCCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999886532 2233222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++ ++.+||+|||+++........                                         
T Consensus       148 ~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~-----------------------------------------  185 (319)
T 2y4i_B          148 AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAG-----------------------------------------  185 (319)
T ss_dssp             HTTCCCCCCCSTTEEEC---CCEECCCSCCC-------------------------------------------------
T ss_pred             hCCccccCCChhhEEEe-CCCEEEeecCCcccccccccc-----------------------------------------
Confidence            99999999999999998 789999999997432210000                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---------CCCCccchHHHHHHHH
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---------QGHGSAVDWWTLGVFL  387 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---------~~~~~~~DiWSlGvil  387 (517)
                                                      ..........||+.|+|||++.+         ..++.++|||||||++
T Consensus       186 --------------------------------~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il  233 (319)
T 2y4i_B          186 --------------------------------RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIW  233 (319)
T ss_dssp             ----------------------------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHH
T ss_pred             --------------------------------ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHH
Confidence                                            00111233468999999999975         3478899999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          388 YEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       388 ~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |+|++|..||.+.........+........... .      ...++.+||.+||..||.+||++.    ++++
T Consensus       234 ~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~~l~~~p~~Rpt~~----~l~~  295 (319)
T 2y4i_B          234 YELHAREWPFKTQPAEAIIWQMGTGMKPNLSQI-G------MGKEISDILLFCWAFEQEERPTFT----KLMD  295 (319)
T ss_dssp             HHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCS-S------CCTTHHHHHHHHHCSSTTTSCCHH----HHHH
T ss_pred             HHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcC-C------CCHHHHHHHHHHhcCChhhCcCHH----HHHH
Confidence            999999999999888877777766543222111 1      112489999999999999999997    6655

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=3.3e-43  Score=347.59  Aligned_cols=261  Identities=21%  Similarity=0.254  Sum_probs=192.0

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH-HHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-AIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      .|...+.||+|+||.||+|+..       ++.||||++..... ........+.+|+.+++.++||||+++++++.+.+.
T Consensus        32 ~~~~~~~lg~G~~g~Vy~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~  104 (307)
T 2nru_A           32 ISVGGNKMGEGGFGVVYKGYVN-------NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD  104 (307)
T ss_dssp             TTTTCCEEEECSSEEEEEEESS-------SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccccCCccccCCCeEEEEEEEC-------CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCc
Confidence            3556699999999999999863       46899999864311 112334567789999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCC-CccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          164 SCLVMEYCPGGDLYAARQRQPG-KRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .|+||||+++|+|.+++..... ..++.                            .....++.||+.||+|||++||+|
T Consensus       105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~----------------------------~~~~~i~~~i~~~l~~lH~~~i~H  156 (307)
T 2nru_A          105 LCLVYVYMPNGSLLDRLSCLDGTPPLSW----------------------------HMRCKIAQGAANGINFLHENHHIH  156 (307)
T ss_dssp             CEEEEECCTTCBHHHHHHTGGGCCCCCH----------------------------HHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             eEEEEEecCCCcHHHHHHhccCCCCCCH----------------------------HHHHHHHHHHHHHHHHHhcCCeec
Confidence            9999999999999998865321 11222                            122467899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+++.......                                                
T Consensus       157 ~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~------------------------------------------------  188 (307)
T 2nru_A          157 RDIKSANILLDEAFTAKISDFGLARASEKFAQ------------------------------------------------  188 (307)
T ss_dssp             SCCCGGGEEECTTCCEEECCCTTCEECCSCSS------------------------------------------------
T ss_pred             CCCCHHHEEEcCCCcEEEeecccccccccccc------------------------------------------------
Confidence            99999999999999999999999843321000                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  ........||+.|+|||++.+. ++.++|||||||++|+|++|..||.+...
T Consensus       189 ----------------------------~~~~~~~~g~~~y~aPE~~~~~-~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          189 ----------------------------TVMTSRIVGTTAYMAPEALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             ----------------------------CEECSSCCSCGGGCCHHHHTTE-ECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             ----------------------------cccccccCCCcCcCChHHhcCC-CCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence                                        0012234699999999998764 88999999999999999999999987544


Q ss_pred             HH----HHHHHhcCCCCCCCCC--CCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          403 EK----TLINILKKPLTFPRIG--VSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       403 ~~----~~~~i~~~~~~~p~~~--~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..    ....+.......+...  ............+.+||.+||+.||.+||++.    +++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~----~l~~~  300 (307)
T 2nru_A          240 PQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIK----KVQQL  300 (307)
T ss_dssp             SSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHH----HHHHH
T ss_pred             hHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHH----HHHHH
Confidence            32    2222222111100000  00001112344689999999999999999997    66653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.2e-44  Score=362.75  Aligned_cols=251  Identities=17%  Similarity=0.181  Sum_probs=182.0

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-----HHHHHhHHHHHHHHHHhcC---------
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-----IRKKLHRADMEKVILTMLD---------  147 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-----~~~~~~~~~~E~~il~~l~---------  147 (517)
                      ..++|++++.||+|+||+||+|++.       ++.||||++......     .......+.+|+.+|+.++         
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~-------~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~   90 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIAD-------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNR   90 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEET-------TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSB
T ss_pred             ccccchheeeecccCceEEEEEEeC-------CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence            3467999999999999999999873       488999999754210     0112355667998888886         


Q ss_pred             CCCccceee-----------------eeec-------------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhh
Q 010140          148 HPFLPTLYA-----------------EFEA-------------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF  197 (517)
Q Consensus       148 HpnIv~l~~-----------------~~~~-------------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~  197 (517)
                      |||||++++                 +|.+             .+.+|||||||++|+|.+.+..   ..+++.      
T Consensus        91 h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~------  161 (336)
T 2vuw_A           91 TEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLA------  161 (336)
T ss_dssp             CCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHH------
T ss_pred             CCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHH------
Confidence            555555544                 4443             7889999999999987665533   222222      


Q ss_pred             hhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH-hcCceeccCCCCceEEccCC--------------------
Q 010140          198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDG--------------------  256 (517)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH-~~~iiHrDLKp~NILl~~~~--------------------  256 (517)
                                            .++.|+.||+.||+||| ++|||||||||+||||+.++                    
T Consensus       162 ----------------------~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 2vuw_A          162 ----------------------TAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGL  219 (336)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTE
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCc
Confidence                                  23478899999999999 99999999999999999887                    


Q ss_pred             cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCC
Q 010140          257 HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHD  336 (517)
Q Consensus       257 ~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (517)
                      .+||+|||+|+....                                                                 
T Consensus       220 ~vkL~DFG~a~~~~~-----------------------------------------------------------------  234 (336)
T 2vuw_A          220 QVSIIDYTLSRLERD-----------------------------------------------------------------  234 (336)
T ss_dssp             EEEECCCTTCBEEET-----------------------------------------------------------------
T ss_pred             eEEEeeccccEecCC-----------------------------------------------------------------
Confidence            899999999843220                                                                 


Q ss_pred             ccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHH-HHHHhhCCCCCCCCCh-HHHHHHHhcCCC
Q 010140          337 QELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVF-LYEMLYGTTPFKGENN-EKTLINILKKPL  414 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvi-l~elltG~~Pf~~~~~-~~~~~~i~~~~~  414 (517)
                                        ...+||+.|+|||++.+.. +.++||||||++ .++++.|..||.+... ......+.... 
T Consensus       235 ------------------~~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~-  294 (336)
T 2vuw_A          235 ------------------GIVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQM-  294 (336)
T ss_dssp             ------------------TEEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTC-
T ss_pred             ------------------CcEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhh-
Confidence                              1236999999999999876 899999998777 7788899999954321 11222333221 


Q ss_pred             CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhh-cCCCcC
Q 010140          415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIK-RHEFFK  465 (517)
Q Consensus       415 ~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell-~hp~f~  465 (517)
                      ..... .........+.++++||.+||++|     |+.    |+| +||||+
T Consensus       295 ~~~~~-~~~~~~~~~s~~~~dli~~~L~~d-----sa~----e~l~~Hp~f~  336 (336)
T 2vuw_A          295 TFKTK-CNTPAMKQIKRKIQEFHRTMLNFS-----SAT----DLLCQHSLFK  336 (336)
T ss_dssp             CCSSC-CCSHHHHHHHHHHHHHHHHGGGSS-----SHH----HHHHHCGGGC
T ss_pred             ccCcc-cchhhhhhcCHHHHHHHHHHhccC-----CHH----HHHhcCCCcC
Confidence            11111 111112234567999999999987     665    999 999995

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=4.4e-42  Score=344.75  Aligned_cols=254  Identities=23%  Similarity=0.312  Sum_probs=190.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh--cCCCCccceeeeeecC
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM--LDHPFLPTLYAEFEAS  161 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~~  161 (517)
                      ++|++.+.||+|+||.||+|++.       ++.||||++....      ...+.+|.+++..  ++||||+++++++...
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~-------~~~vavK~~~~~~------~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~  108 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKWR-------GEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKD  108 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEET-------TEEEEEEEECGGG------HHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred             ccEEEEeeecCCCCcEEEEEEEc-------CccEEEEEeCchh------HHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence            57999999999999999999874       4789999997543      2344568888887  7999999999999877


Q ss_pred             c----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH-
Q 010140          162 H----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-  236 (517)
Q Consensus       162 ~----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH-  236 (517)
                      .    .+|+||||+++|+|.+++...   .++...                            +..++.||+.||+||| 
T Consensus       109 ~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~----------------------------~~~i~~~i~~~l~~lH~  157 (342)
T 1b6c_B          109 NGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEG----------------------------MIKLALSTASGLAHLHM  157 (342)
T ss_dssp             CSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHH----------------------------HHHHHHHHHHHHHHHHC
T ss_pred             CCccceeEEEEeecCCCcHHHHHhcc---CccHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            5    899999999999999998763   222222                            2367899999999999 


Q ss_pred             -------hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccc
Q 010140          237 -------MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSS  309 (517)
Q Consensus       237 -------~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (517)
                             ++||+||||||+|||++.++.+||+|||++.........                                  
T Consensus       158 ~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~----------------------------------  203 (342)
T 1b6c_B          158 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT----------------------------------  203 (342)
T ss_dssp             CBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTE----------------------------------
T ss_pred             HHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccc----------------------------------
Confidence                   899999999999999999999999999998543211100                                  


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC------CCccchHHHH
Q 010140          310 VSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG------HGSAVDWWTL  383 (517)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~------~~~~~DiWSl  383 (517)
                                                              .........||+.|+|||++.+..      ++.++|||||
T Consensus       204 ----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~sl  243 (342)
T 1b6c_B          204 ----------------------------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAM  243 (342)
T ss_dssp             ----------------------------------------EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccccCCcCcccCCHhhhcccccccccccCCcccHHHH
Confidence                                                    001123447999999999998763      2368999999


Q ss_pred             HHHHHHHhhC----------CCCCCCCC-----hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccc
Q 010140          384 GVFLYEMLYG----------TTPFKGEN-----NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR  448 (517)
Q Consensus       384 Gvil~elltG----------~~Pf~~~~-----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  448 (517)
                      ||++|||++|          ..||....     .......+...... +..... .........+.+||.+||+.||++|
T Consensus       244 G~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~R  321 (342)
T 1b6c_B          244 GLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLR-PNIPNR-WQSCEALRVMAKIMRECWYANGAAR  321 (342)
T ss_dssp             HHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC-CCCCGG-GGTSHHHHHHHHHHHHHCCSSGGGS
T ss_pred             HHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhC-CCCccc-ccchhHHHHHHHHHHHHhccChhhC
Confidence            9999999999          78987642     22333333332221 111110 0111334468999999999999999


Q ss_pred             cCCCCChHHhhcC
Q 010140          449 IGSLKGSVEIKRH  461 (517)
Q Consensus       449 ~t~~~~~~ell~h  461 (517)
                      |++.    |+++|
T Consensus       322 ps~~----~i~~~  330 (342)
T 1b6c_B          322 LTAL----RIKKT  330 (342)
T ss_dssp             CCHH----HHHHH
T ss_pred             CCHH----HHHHH
Confidence            9997    77654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.6e-42  Score=343.37  Aligned_cols=259  Identities=23%  Similarity=0.307  Sum_probs=192.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++++.||+|+||.||+|+..... ..+++.||||++....   ......+.+|+.+++.++||||+++++++
T Consensus        36 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~-~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  111 (326)
T 2w1i_A           36 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQ-DNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVC  111 (326)
T ss_dssp             -CCCGGGEEEEEEEECCSSEEEEEEEECTTS-SSCCEEEEEEEESSCC---SHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             cccCHHHceeeeeeccCCCeEEEEEEecccc-CCCceEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence            3456678999999999999999999864211 1267899999987542   23345677899999999999999999988


Q ss_pred             ecCc--eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          159 EASH--YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       159 ~~~~--~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ...+  .+|+||||+++|+|.+++.... ..++...                            +..++.||+.||+|||
T Consensus       112 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~aL~~LH  162 (326)
T 2w1i_A          112 YSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIK----------------------------LLQYTSQICKGMEYLG  162 (326)
T ss_dssp             CC----CCEEEECCCTTCBHHHHHHHST-TSSCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EecCCCceEEEEECCCCCCHHHHHHhcc-cCCCHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            6543  7899999999999999987653 1222222                            2367899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++........                                         
T Consensus       163 ~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~-----------------------------------------  201 (326)
T 2w1i_A          163 TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEY-----------------------------------------  201 (326)
T ss_dssp             HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSE-----------------------------------------
T ss_pred             hCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccc-----------------------------------------
Confidence            999999999999999999999999999998543311100                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ........|+..|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       202 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~  247 (326)
T 2w1i_A          202 ----------------------------------YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEK  247 (326)
T ss_dssp             ----------------------------------EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCG
T ss_pred             ----------------------------------cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCC
Confidence                                              0011223578889999999988899999999999999999999999


Q ss_pred             CCCCChH------------H---HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENNE------------K---TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~~------------~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |......            .   .+...+......+... .      .+.++.+||.+||+.||++||++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~li~~cl~~dP~~Rps~~  311 (326)
T 2w1i_A          248 SKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-G------CPDEIYMIMTECWNNNVNQRPSFR  311 (326)
T ss_dssp             GGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCT-T------CCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCC-c------ccHHHHHHHHHHcCCChhhCcCHH
Confidence            8643110            0   1112222222222111 1      123589999999999999999997

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.7e-42  Score=335.42  Aligned_cols=224  Identities=15%  Similarity=0.117  Sum_probs=175.4

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++.+.||+|+||.||+|++..     +++.||||++.............+.+|+.++..++||||+++++++.+
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~  102 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTA-----LDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT  102 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETT-----TTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecC-----CCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE
Confidence            445789999999999999999999876     678999999976533223445677789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++..|+||||++|++|.+++...    ....                            ++..++.||+.||+|||++||
T Consensus       103 ~~~~~lv~e~~~g~~L~~~l~~~----~~~~----------------------------~~~~i~~ql~~aL~~lH~~gi  150 (286)
T 3uqc_A          103 RAGGLVVAEWIRGGSLQEVADTS----PSPV----------------------------GAIRAMQSLAAAADAAHRAGV  150 (286)
T ss_dssp             TTEEEEEEECCCEEEHHHHHTTC----CCHH----------------------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEEEecCCCCHHHHHhcC----CChH----------------------------HHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999998542    1111                            123678999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.+|.+||+++|.                                                       
T Consensus       151 vH~Dikp~NIll~~~g~~kl~~~~~-------------------------------------------------------  175 (286)
T 3uqc_A          151 ALSIDHPSRVRVSIDGDVVLAYPAT-------------------------------------------------------  175 (286)
T ss_dssp             CCCCCSGGGEEEETTSCEEECSCCC-------------------------------------------------------
T ss_pred             ccCCCCcccEEEcCCCCEEEEeccc-------------------------------------------------------
Confidence            9999999999999999999986552                                                       


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                                 ++       .++.++|||||||++|||++|+.||.+.
T Consensus       176 -------------------------------------------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~  205 (286)
T 3uqc_A          176 -------------------------------------------MP-------DANPQDDIRGIGASLYALLVNRWPLPEA  205 (286)
T ss_dssp             -------------------------------------------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCC
T ss_pred             -------------------------------------------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence                                                       22       2788999999999999999999999986


Q ss_pred             ChHHHHH---HHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          401 NNEKTLI---NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       401 ~~~~~~~---~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      +....+.   +........+...     ....+.++.+||.+||+.||.+| |+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dP~~R-s~~  254 (286)
T 3uqc_A          206 GVRSGLAPAERDTAGQPIEPADI-----DRDIPFQISAVAARSVQGDGGIR-SAS  254 (286)
T ss_dssp             SBCCCSEECCBCTTSCBCCHHHH-----CTTSCHHHHHHHHHHHCTTSSCC-CHH
T ss_pred             CcchhhHHHHHHhccCCCChhhc-----ccCCCHHHHHHHHHHcccCCccC-CHH
Confidence            6432111   1111111100000     01123458999999999999999 886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.9e-41  Score=370.80  Aligned_cols=246  Identities=23%  Similarity=0.357  Sum_probs=191.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++++.||+|+||.||+|.++..    +++.||||++.....  ......+.+|+.+|+.++||||+++++++
T Consensus        75 g~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~----~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  148 (681)
T 2pzi_A           75 GDIVAGQYEVKGCIAHGGLGWIYLALDRNV----NGRPVVLKGLVHSGD--AEAQAMAMAERQFLAEVVHPSIVQIFNFV  148 (681)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEEGGG----TTEEEEEEESCSSCC--HHHHHHHHHHHGGGGGCCCTTBCCEEEEE
T ss_pred             CCEeCCceEEEEEEeeCCCeEEEEEEEcCC----CCcEEEEEEeCccCC--HHHHHHHHHHHHHHHhcCCCCcCeEeeeE
Confidence            344558999999999999999999998752    468899999864321  23345667799999999999999999999


Q ss_pred             ecCce-----eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHH
Q 010140          159 EASHY-----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALE  233 (517)
Q Consensus       159 ~~~~~-----~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  233 (517)
                      ...+.     .||||||++|++|.+++..    .+++..                            +..|+.||+.||.
T Consensus       149 ~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~----------------------------~~~~~~qi~~aL~  196 (681)
T 2pzi_A          149 EHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAE----------------------------AIAYLLEILPALS  196 (681)
T ss_dssp             EEECTTSCEEEEEEEECCCCEECC----C----CCCHHH----------------------------HHHHHHHHHHHHH
T ss_pred             eecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHH----------------------------HHHHHHHHHHHHH
Confidence            87655     7999999999999876543    232222                            2367899999999


Q ss_pred             HHHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          234 YLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       234 yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |||++|||||||||+|||++.+ .+||+|||+++....                                          
T Consensus       197 ~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~------------------------------------------  233 (681)
T 2pzi_A          197 YLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS------------------------------------------  233 (681)
T ss_dssp             HHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTC------------------------------------------
T ss_pred             HHHHCCCeecccChHHeEEeCC-cEEEEecccchhccc------------------------------------------
Confidence            9999999999999999999875 899999999843221                                          


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                              ....+||+.|+|||++.+. ++.++|||||||++|+|++|
T Consensus       234 ----------------------------------------~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g  272 (681)
T 2pzi_A          234 ----------------------------------------FGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLD  272 (681)
T ss_dssp             ----------------------------------------CSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSC
T ss_pred             ----------------------------------------CCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhC
Confidence                                                    1234699999999999875 48899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      .+||.+....           ..+    ...........+.+||.+||+.||.+||+..    +.+.|+|+.
T Consensus       273 ~~~~~~~~~~-----------~~~----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~----~~l~~~l~~  325 (681)
T 2pzi_A          273 LPTRNGRYVD-----------GLP----EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTA----EEMSAQLTG  325 (681)
T ss_dssp             CCEETTEECS-----------SCC----TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSH----HHHHHHHHH
T ss_pred             CCCCcccccc-----------ccc----ccccccccCHHHHHHHhhhccCChhhCCCHH----HHHHHHHHH
Confidence            9998753211           011    1112223345689999999999999999987    888888875

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=100.00  E-value=5.8e-36  Score=319.06  Aligned_cols=190  Identities=18%  Similarity=0.074  Sum_probs=130.1

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchH-------HHHHHHHHhHHHHHHHHHHhc-CCCCccceeeeeecC
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDRE-------ALAIRKKLHRADMEKVILTML-DHPFLPTLYAEFEAS  161 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~-------~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~  161 (517)
                      ..++.|++|.+..++..-     .++.||+|++.+.       ........+.+.+|+.+|+++ .|+||++++++++++
T Consensus       240 ~~~~~~~~~~h~~~rr~~-----fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~  314 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYF-----FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENA  314 (569)
T ss_dssp             CC-C--------CCEEEE-----ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECS
T ss_pred             hccccCCccccccccccc-----ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEEC
Confidence            345566666666655544     5678999998643       223345567788999999999 799999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|||||||+|++|.+++....  .+..                               +.|++||+.||+|||++|||
T Consensus       315 ~~~yLVMEyv~G~~L~d~i~~~~--~l~~-------------------------------~~I~~QIl~AL~ylH~~GII  361 (569)
T 4azs_A          315 QSGWLVMEKLPGRLLSDMLAAGE--EIDR-------------------------------EKILGSLLRSLAALEKQGFW  361 (569)
T ss_dssp             SEEEEEEECCCSEEHHHHHHTTC--CCCH-------------------------------HHHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEEEEecCCCCcHHHHHHhCC--CCCH-------------------------------HHHHHHHHHHHHHHHHCCce
Confidence            99999999999999999997652  2211                               24679999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||||+.+|++||+|||+|+.....                                                 
T Consensus       362 HRDIKPeNILL~~dg~vKL~DFGlAr~~~~~-------------------------------------------------  392 (569)
T 4azs_A          362 HDDVRPWNVMVDARQHARLIDFGSIVTTPQD-------------------------------------------------  392 (569)
T ss_dssp             ESCCCGGGEEECTTSCEEECCCTTEESCC---------------------------------------------------
T ss_pred             eccCchHhEEECCCCCEEEeecccCeeCCCC-------------------------------------------------
Confidence            9999999999999999999999998543210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                   .....+.+||+.|||||++.+. +..++|+||+|+++++|.++..+
T Consensus       393 -----------------------------~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          393 -----------------------------CSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             ------------------------------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             -----------------------------CccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence                                         1123456899999999999875 67789999999998887665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.96  E-value=1.2e-29  Score=268.86  Aligned_cols=194  Identities=16%  Similarity=0.117  Sum_probs=142.5

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecch-----HHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDR-----EALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~-----~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ...+.||+|+||.||+|+..       ++.+++|....     .........+++.+|+.+|++++||||+++..++...
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~-------~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~  411 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYL-------DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDL  411 (540)
T ss_dssp             ---------CCEEEEEEECS-------SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEET
T ss_pred             CCCCEEeeCCCEEEEEEEEC-------CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeC
Confidence            34668999999999999443       36678876432     2223334456788899999999999999665555577


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +..|||||||+|++|.+++..          .                            ..|+.||+.||+|||++||+
T Consensus       412 ~~~~lVmE~~~ggsL~~~l~~----------~----------------------------~~i~~qi~~aL~~LH~~gIi  453 (540)
T 3en9_A          412 DNKRIMMSYINGKLAKDVIED----------N----------------------------LDIAYKIGEIVGKLHKNDVI  453 (540)
T ss_dssp             TTTEEEEECCCSEEHHHHSTT----------C----------------------------THHHHHHHHHHHHHHHTTEE
T ss_pred             CccEEEEECCCCCCHHHHHHH----------H----------------------------HHHHHHHHHHHHHHHHCcCc
Confidence            778999999999999998764          1                            26789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.  .+||+|||+++.........                                             
T Consensus       454 HrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~---------------------------------------------  486 (540)
T 3en9_A          454 HNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKA---------------------------------------------  486 (540)
T ss_dssp             CTTCCTTSEEESS--SEEECCCTTCEECCCHHHHH---------------------------------------------
T ss_pred             cCCCCHHHEEECC--eEEEEECccCEECCCccccc---------------------------------------------
Confidence            9999999999998  99999999996543211000                                             


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC--CCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~--~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                .........++||+.|||||++.+  ..|+..+|+|+..+-..+.+.++.+|.
T Consensus       487 --------------------------~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          487 --------------------------VDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             --------------------------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             --------------------------cchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence                                      000001234579999999999987  568888999999999988888777663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.94  E-value=3.7e-27  Score=229.41  Aligned_cols=133  Identities=20%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---------------HHHhHHHHHHHHHHhcCCCC
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---------------KKLHRADMEKVILTMLDHPF  150 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---------------~~~~~~~~E~~il~~l~Hpn  150 (517)
                      |.+++.||+|+||.||+|++ .     +++.||||+++.......               .....+.+|+.+|+.++  |
T Consensus        92 ~~~~~~iG~G~~g~Vy~~~~-~-----~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~  163 (282)
T 1zar_A           92 DAIGKLMGEGKESAVFNCYS-E-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G  163 (282)
T ss_dssp             SEEEEEEEECSSEEEEEEEE-T-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T
T ss_pred             EEecCEeccCCCceEEEEEe-C-----CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C
Confidence            44559999999999999998 4     578999999975432111               23456778999999999  5


Q ss_pred             ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       151 Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                       +++++++.. +..|+|||||+||+|.+ +..        ...                            +.++.||+.
T Consensus       164 -~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~----------------------------~~i~~qi~~  204 (282)
T 1zar_A          164 -LAVPKVYAW-EGNAVLMELIDAKELYR-VRV--------ENP----------------------------DEVLDMILE  204 (282)
T ss_dssp             -SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCH----------------------------HHHHHHHHH
T ss_pred             -CCcCeEEec-cceEEEEEecCCCcHHH-cch--------hhH----------------------------HHHHHHHHH
Confidence             666666544 56799999999999977 311        111                            257899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      ||.|||++||+||||||+|||++ +|.+||+|||+|
T Consensus       205 ~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a  239 (282)
T 1zar_A          205 EVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQS  239 (282)
T ss_dssp             HHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTC
T ss_pred             HHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCC
Confidence            99999999999999999999999 999999999998

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.86  E-value=1.1e-21  Score=188.23  Aligned_cols=141  Identities=15%  Similarity=0.113  Sum_probs=103.6

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCce--eeeeecchHHHHHH---------------------HHHhHHHHHHH
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCF--YAMKVVDREALAIR---------------------KKLHRADMEKV  141 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~--vAiK~i~~~~~~~~---------------------~~~~~~~~E~~  141 (517)
                      -|.+.+.||+|+||.||+|.+..     +++.  ||||+++.......                     .....+.+|+.
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~-----~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  122 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVF-----DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFR  122 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEE-----TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcC-----CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHH
Confidence            37899999999999999999854     4677  99998754321111                     11235677999


Q ss_pred             HHHhcCCCCc--cceeeeeecCceeEEEEEecCC-C----chhHHHHhCCCCccCccchhhhhhhhhhhhhcCCcccccc
Q 010140          142 ILTMLDHPFL--PTLYAEFEASHYSCLVMEYCPG-G----DLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTD  214 (517)
Q Consensus       142 il~~l~HpnI--v~l~~~~~~~~~~~lV~E~~~g-g----~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  214 (517)
                      +|..+.|++|  +.+++.    ...||||||+.+ |    +|.++...     .+.                        
T Consensus       123 ~l~~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~------------------------  169 (258)
T 1zth_A          123 NLERAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKE------------------------  169 (258)
T ss_dssp             HHHHHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGG------------------------
T ss_pred             HHHHHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cCh------------------------
Confidence            9999988864  444432    357899999942 4    55443221     011                        


Q ss_pred             chhhhhhhHHHHHHHHHHHHHH-hcCceeccCCCCceEEccCCcEEeccCCCcccc
Q 010140          215 VTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKC  269 (517)
Q Consensus       215 ~~~~~~~~~~~~qi~~aL~yLH-~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~  269 (517)
                          ...+.++.||+.||.||| ++|||||||||+|||++.  .++|+|||+|...
T Consensus       170 ----~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          170 ----LDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence                122467899999999999 999999999999999988  8999999999543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.78  E-value=6.5e-19  Score=176.02  Aligned_cols=139  Identities=14%  Similarity=0.160  Sum_probs=97.8

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH------------------H-HHHHHhHHHHHHHHHHhc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL------------------A-IRKKLHRADMEKVILTML  146 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~------------------~-~~~~~~~~~~E~~il~~l  146 (517)
                      |++++.||.|+||.||+|.+.      .++.||||+++....                  . .........+|...|.++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~------~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL  170 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE------KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKAL  170 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT------TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCEeeeCCceEEEEEECC------CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999875      468899998753210                  0 000111123577777777


Q ss_pred             CCCCccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHH
Q 010140          147 DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAA  226 (517)
Q Consensus       147 ~HpnIv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (517)
                      .+.++.. ...+.. ...+|||||++|++|.++..        ....                            +.++.
T Consensus       171 ~~~gv~v-p~p~~~-~~~~LVME~i~G~~L~~l~~--------~~~~----------------------------~~l~~  212 (397)
T 4gyi_A          171 YEEGFPV-PEPIAQ-SRHTIVMSLVDALPMRQVSS--------VPDP----------------------------ASLYA  212 (397)
T ss_dssp             HHTTCSC-CCEEEE-ETTEEEEECCSCEEGGGCCC--------CSCH----------------------------HHHHH
T ss_pred             HhcCCCC-Ceeeec-cCceEEEEecCCccHhhhcc--------cHHH----------------------------HHHHH
Confidence            6555422 111211 22379999999988854321        1111                            25678


Q ss_pred             HHHHHHHHHHhcCceeccCCCCceEEccCC----------cEEeccCCCccc
Q 010140          227 ETLLALEYLHMMGIVYRDLKPENVLVREDG----------HIMLSDFDLSFK  268 (517)
Q Consensus       227 qi~~aL~yLH~~~iiHrDLKp~NILl~~~~----------~vkL~DFGls~~  268 (517)
                      ||+.+|.|||++|||||||||.|||++.+|          .+.|+||+-+-.
T Consensus       213 qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          213 DLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             HHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence            999999999999999999999999998776          389999997744

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.42  E-value=7e-13  Score=127.00  Aligned_cols=139  Identities=15%  Similarity=0.092  Sum_probs=107.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  162 (517)
                      +.|++...+|.|+.+.||++...       ++.+++|+......   .....+.+|+.+|+.+. +..+.++++++.+.+
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~~-------~~~~vlK~~~~~~~---~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~   83 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVGE-------NENLYLKMTDSRYK---GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG   83 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEECS-------SCEEEEEEECGGGT---TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred             ccceeEeeccCCCCCeEEEEECC-------CCcEEEEeCCcccC---CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence            57999999999999999998643       36799999875321   11235677999999984 677889999999989


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-----
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-----  237 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-----  237 (517)
                      ..|+||||++|.+|.+.+..       ....                            ..++.+++.+|..||+     
T Consensus        84 ~~~lv~e~i~G~~l~~~~~~-------~~~~----------------------------~~~~~~l~~~l~~LH~~~~~~  128 (263)
T 3tm0_A           84 WSNLLMSEADGVLCSEEYED-------EQSP----------------------------EKIIELYAECIRLFHSIDISD  128 (263)
T ss_dssp             EEEEEEECCSSEEHHHHCCT-------TTCH----------------------------HHHHHHHHHHHHHHHHSCCTT
T ss_pred             ceEEEEEecCCeehhhccCC-------cccH----------------------------HHHHHHHHHHHHHHhCCCccc
Confidence            99999999999998764211       0011                            1345778888888887     


Q ss_pred             ------------------------------------------------------cCceeccCCCCceEEccCCcEEeccC
Q 010140          238 ------------------------------------------------------MGIVYRDLKPENVLVREDGHIMLSDF  263 (517)
Q Consensus       238 ------------------------------------------------------~~iiHrDLKp~NILl~~~~~vkL~DF  263 (517)
                                                                            ..++|+|++|.|||++.++.+.|+||
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDw  208 (263)
T 3tm0_A          129 CPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDL  208 (263)
T ss_dssp             CSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCC
T ss_pred             CCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEc
Confidence                                                                  45899999999999987655679999


Q ss_pred             CCcc
Q 010140          264 DLSF  267 (517)
Q Consensus       264 Gls~  267 (517)
                      +.+.
T Consensus       209 e~a~  212 (263)
T 3tm0_A          209 GRSG  212 (263)
T ss_dssp             TTCE
T ss_pred             hhcc
Confidence            9873

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.33  E-value=4.8e-12  Score=120.67  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC--ccceeeeeec
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF--LPTLYAEFEA  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~~~~  160 (517)
                      ..+|.+....+.|..+.||++...      .+..+++|+....      ....+..|+.+|+.+.+.+  +.+++++...
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~~------~g~~~vlK~~~~~------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~   86 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSAQ------GRPVLFVKTDLSG------ALNELQDEAARLSWLATTGVPCAAVLDVVTE   86 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECT------TSCCEEEEEECSC------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC
T ss_pred             cCCCceEecccCCCCceEEEEecC------CCCeEEEEeCCcc------cchhhhHHHHHHHHHHhCCCCCCeEEEeccC
Confidence            456777665556777999999643      3467999997653      1245667999999985444  5678998888


Q ss_pred             CceeEEEEEecCCCchh
Q 010140          161 SHYSCLVMEYCPGGDLY  177 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~  177 (517)
                      ++..|+||||++|.+|.
T Consensus        87 ~~~~~~v~e~i~G~~l~  103 (264)
T 1nd4_A           87 AGRDWLLLGEVPGQDLL  103 (264)
T ss_dssp             SSCEEEEEECCSSEETT
T ss_pred             CCCCEEEEEecCCcccC
Confidence            88899999999998884

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.19  E-value=6.8e-11  Score=118.61  Aligned_cols=142  Identities=16%  Similarity=0.212  Sum_probs=97.0

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecc--hHHHHHHHHHhHHHHHHHHHHhcC--CCCccceeeeeecC
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVD--REALAIRKKLHRADMEKVILTMLD--HPFLPTLYAEFEAS  161 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~--~~~~~~~~~~~~~~~E~~il~~l~--HpnIv~l~~~~~~~  161 (517)
                      ..-++.|+.|.++.||++...       +..+++|+..  .....  .....+.+|..+|+.|.  +..+++++.++.+.
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~-------~~~~vlr~~~~p~~~~~--~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~  110 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTP-------GQTYVMRAKPGPKSKLL--PSAHAIEREYRVMDALAGTDVPVAKMYALCEDE  110 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECS-------SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCT
T ss_pred             CceEEEcCCcccceEEEEEEC-------CceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC
Confidence            445778999999999998754       2568899886  43211  22346677999999996  45688999888776


Q ss_pred             ---ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-
Q 010140          162 ---HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-  237 (517)
Q Consensus       162 ---~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-  237 (517)
                         +..|+||||++|..|.+...    ..+...                            ..+.++.+++..|..||+ 
T Consensus       111 ~~~g~~~~vme~v~G~~l~~~~~----~~l~~~----------------------------~~~~~~~~l~~~La~LH~~  158 (359)
T 3dxp_A          111 SVIGRAFYIMEFVSGRVLWDQSL----PGMSPA----------------------------ERTAIYDEMNRVIAAMHTV  158 (359)
T ss_dssp             TTTSSCEEEEECCCCBCCCCTTC----TTCCHH----------------------------HHHHHHHHHHHHHHHHHHS
T ss_pred             CccCCeEEEEEecCCeecCCCcc----ccCCHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence               45899999999877743100    011111                            112455677777777775 


Q ss_pred             ---------------------------------------------------------cCceeccCCCCceEEccCCc--E
Q 010140          238 ---------------------------------------------------------MGIVYRDLKPENVLVREDGH--I  258 (517)
Q Consensus       238 ---------------------------------------------------------~~iiHrDLKp~NILl~~~~~--v  258 (517)
                                                                               ..+||+|++|.|||++.++.  +
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~  238 (359)
T 3dxp_A          159 DYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVL  238 (359)
T ss_dssp             CTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEE
T ss_pred             CchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEE
Confidence                                                                     36999999999999997753  6


Q ss_pred             EeccCCCccc
Q 010140          259 MLSDFDLSFK  268 (517)
Q Consensus       259 kL~DFGls~~  268 (517)
                      .|+||+.+..
T Consensus       239 ~viDwe~a~~  248 (359)
T 3dxp_A          239 AVLDWELSTL  248 (359)
T ss_dssp             EECCCTTCEE
T ss_pred             EEECcccccc
Confidence            8999999853

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.97  E-value=1.3e-09  Score=106.59  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCC--ccceeeeeecCc---
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPF--LPTLYAEFEASH---  162 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~Hpn--Iv~l~~~~~~~~---  162 (517)
                      ++.++.|....||++.          ..+++|+....     .....+.+|..+|+.+ .+..  +.+++.......   
T Consensus        25 i~~~~~G~~n~v~~v~----------~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~   89 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----------RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQ   89 (304)
T ss_dssp             CCEEEECSSEEEEEST----------TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCS
T ss_pred             eEecCCCCcceEEEEC----------CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCC
Confidence            4569999999999863          34889987654     2234566799999888 3333  445555544333   


Q ss_pred             eeEEEEEecCCCchhH
Q 010140          163 YSCLVMEYCPGGDLYA  178 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~  178 (517)
                      ..|+|||+++|.+|..
T Consensus        90 ~~~~vm~~i~G~~l~~  105 (304)
T 3sg8_A           90 MSFAGFTKIKGVPLTP  105 (304)
T ss_dssp             CSCEEEECCCCEECCH
T ss_pred             cceEEEcccCCeECCc
Confidence            3489999999988865

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.55  E-value=8.5e-07  Score=84.68  Aligned_cols=84  Identities=19%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             ceEEeeeecccee-EEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCce
Q 010140           86 FRLLRRLGSGDIG-NVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHY  163 (517)
Q Consensus        86 y~i~~~LG~G~fG-~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  163 (517)
                      |+.. .+..|..| .||+.....     .+..+.+|+-....      ...+.+|..+|+.+. +--|.+++.++.+.+.
T Consensus        27 ~~~~-~~~~G~S~~~v~rl~~~~-----~~~~~~lk~~~~~~------~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~   94 (272)
T 4gkh_A           27 YRWA-RDNVGQSGATIYRLYGKP-----NAPELFLKHGKGSV------ANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDD   94 (272)
T ss_dssp             CEEE-EEECSSSSCEEEEEECCT-----TCCCEEEEEEETHH------HHHHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             CeEE-EccCCCcCCeEEEEEecC-----CCeEEEEEECCCCC------HhHHHHHHHHHHHhccCCCcCeEEEEEEECCe
Confidence            4443 34445544 799877654     34678999876542      234566999998884 3336788999999999


Q ss_pred             eEEEEEecCCCchhHHHH
Q 010140          164 SCLVMEYCPGGDLYAARQ  181 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~  181 (517)
                      .|+|||+++|.++.+...
T Consensus        95 ~~lvme~l~G~~~~~~~~  112 (272)
T 4gkh_A           95 AWLLTTAIPGKTAFQVLE  112 (272)
T ss_dssp             EEEEEECCCSEEHHHHHH
T ss_pred             EEEEEEeeCCcccccccc
Confidence            999999999988766543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.52  E-value=1.4e-06  Score=85.03  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             EeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC---Cccceeeeee-cCcee
Q 010140           89 LRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP---FLPTLYAEFE-ASHYS  164 (517)
Q Consensus        89 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp---nIv~l~~~~~-~~~~~  164 (517)
                      ++.++.|....||+.   +       ..+++|+....     .....+.+|..+|+.+.+.   .|.+.+.+.. ..+..
T Consensus        24 v~~l~~G~~n~v~~v---g-------~~~VlR~~~~~-----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~   88 (306)
T 3tdw_A           24 VESLGEGFRNYAILV---N-------GDWVFRFPKSQ-----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNP   88 (306)
T ss_dssp             EEEEEECSSEEEEEE---T-------TTEEEEEESSH-----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCE
T ss_pred             eeecCCCcceeEEEE---C-------CEEEEEecCCc-----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCce
Confidence            456889999999987   1       34788886543     2234667799999999652   3566666664 45667


Q ss_pred             EEEEEecCCCchhH
Q 010140          165 CLVMEYCPGGDLYA  178 (517)
Q Consensus       165 ~lV~E~~~gg~L~~  178 (517)
                      |+||||++|.+|..
T Consensus        89 ~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           89 FVGYRKVQGQILGE  102 (306)
T ss_dssp             EEEEECCCSEECHH
T ss_pred             EEEEeccCCeECch
Confidence            89999999988865

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.38  E-value=1.3e-06  Score=88.47  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHH-HHH---HHHhHHHHHHHHHHhcCC--C-Cccceeeeee
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREAL-AIR---KKLHRADMEKVILTMLDH--P-FLPTLYAEFE  159 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~-~~~---~~~~~~~~E~~il~~l~H--p-nIv~l~~~~~  159 (517)
                      .-.+.||.|..+.||++....     .++.|+||....... ...   ....++..|..+|+.+..  | .+.+++.+  
T Consensus        33 ~~~~~lg~G~~n~vyrv~~~~-----~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--  105 (397)
T 2olc_A           33 LTCQEIGDGNLNYVFHIYDQE-----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--  105 (397)
T ss_dssp             CEEEECCSSSSEEEEEEEC---------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--
T ss_pred             eEEEECCCCceEEEEEEEECC-----CCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--
Confidence            356789999999999997553     346799998653221 000   123455678899888742  3 34566644  


Q ss_pred             cCceeEEEEEecCCCch
Q 010140          160 ASHYSCLVMEYCPGGDL  176 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L  176 (517)
                      +.+..++|||+++|..+
T Consensus       106 d~~~~~lvmE~l~g~~~  122 (397)
T 2olc_A          106 DTEMAVTVMEDLSHLKI  122 (397)
T ss_dssp             ETTTTEEEECCCTTSEE
T ss_pred             cCCccEEEEEeCCCcch
Confidence            34456899999977543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.33  E-value=4.3e-06  Score=82.51  Aligned_cols=43  Identities=21%  Similarity=0.225  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHh-------------cCceeccCCCCceEEccCCcEEeccCCCcc
Q 010140          225 AAETLLALEYLHM-------------MGIVYRDLKPENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       225 ~~qi~~aL~yLH~-------------~~iiHrDLKp~NILl~~~~~vkL~DFGls~  267 (517)
                      ..++..++++|++             .++||+|+++.|||++.++.+.|+||+.+.
T Consensus       196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          196 IEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            3345556667653             579999999999999888899999999873

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.15  E-value=5.6e-06  Score=82.41  Aligned_cols=93  Identities=12%  Similarity=0.016  Sum_probs=58.9

Q ss_pred             ceEEeee-eccceeEEEEEEEecCCCC-CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-C--CCccceeeeeec
Q 010140           86 FRLLRRL-GSGDIGNVYLCQIRNPMVG-LPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-H--PFLPTLYAEFEA  160 (517)
Q Consensus        86 y~i~~~L-G~G~fG~Vy~~~~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~  160 (517)
                      ....+.| +.|....+|++.......+ ..+..+++|+..............+.+|+.+|+.|. +  -.+.+++.+..+
T Consensus        22 v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~  101 (357)
T 3ats_A           22 VTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETT  101 (357)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECS
T ss_pred             eEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccC
Confidence            4456788 8999999999875410000 013578899876432000001245566999998884 3  357788887765


Q ss_pred             C---ceeEEEEEecCCCchhH
Q 010140          161 S---HYSCLVMEYCPGGDLYA  178 (517)
Q Consensus       161 ~---~~~~lV~E~~~gg~L~~  178 (517)
                      .   +..|+||||++|..|.+
T Consensus       102 ~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          102 GDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             STTTSSCEEEEECCCCBCCCB
T ss_pred             CCccCCceEEEEecCCCChhh
Confidence            5   45789999999877653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.97  E-value=7.4e-05  Score=72.71  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC---CCCccceeeeeecCc
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD---HPFLPTLYAEFEASH  162 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~---HpnIv~l~~~~~~~~  162 (517)
                      ..-.+.|+.|....+|+....       +..+++|+.....      ...+..|...|+.|.   ...|++++.+....+
T Consensus        38 i~~~~~l~gG~~n~~y~v~~~-------~~~~vlK~~~~~~------~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g  104 (312)
T 3jr1_A           38 IKHKEKLYSGEMNEIWLINDE-------VQTVFVKINERSY------RSMFRAEADQLALLAKTNSINVPLVYGIGNSQG  104 (312)
T ss_dssp             CCEEEEECCSSSSEEEEEESS-------SCEEEEEEEEGGG------HHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSS
T ss_pred             eeeeEEeCCccceeeeEEEEC-------CCeEEEEeCCccc------HHHHHHHHHHHHHHHhhCCCCcceEEEEeecCC
Confidence            345678999999999998642       3578899876531      345566988888883   356888998888888


Q ss_pred             eeEEEEEecCCCch
Q 010140          163 YSCLVMEYCPGGDL  176 (517)
Q Consensus       163 ~~~lV~E~~~gg~L  176 (517)
                      ..|+||||++|..+
T Consensus       105 ~~~lvme~l~G~~~  118 (312)
T 3jr1_A          105 HSFLLLEALNKSKN  118 (312)
T ss_dssp             EEEEEEECCCCCCC
T ss_pred             ceEEEEEeccCCCC
Confidence            89999999998765

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.87  E-value=0.00025  Score=69.16  Aligned_cols=82  Identities=10%  Similarity=0.066  Sum_probs=48.7

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC--ccceeee---
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF--LPTLYAE---  157 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn--Iv~l~~~---  157 (517)
                      .+...-++.|+.|....||++...+       ..+++|+....     .....+..|..++..|...+  +.+++..   
T Consensus        21 ~~~~~~~~~i~~G~~n~~~~v~~~~-------g~~vlk~~~~~-----~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g   88 (322)
T 2ppq_A           21 VGSLTSYKGIAEGVENSNFLLHTTK-------DPLILTLYEKR-----VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDG   88 (322)
T ss_dssp             CCCEEEEEEECC---EEEEEEEESS-------CCEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTC
T ss_pred             CCcceEeeccCCCcccceEEEEeCC-------ccEEEEEeCCC-----CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCC
Confidence            3445567788889999999987542       35889998753     11234445788877773212  3333321   


Q ss_pred             ---eecCceeEEEEEecCCCch
Q 010140          158 ---FEASHYSCLVMEYCPGGDL  176 (517)
Q Consensus       158 ---~~~~~~~~lV~E~~~gg~L  176 (517)
                         ....+..++||+|++|..+
T Consensus        89 ~~~~~~~g~~~~l~~~l~G~~~  110 (322)
T 2ppq_A           89 ELLGELSGRPAALISFLEGMWL  110 (322)
T ss_dssp             CSCEEETTEEEEEEECCCCBCC
T ss_pred             CEEEEECCEEEEEEEeCCCcCC
Confidence               1234567999999988654

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.77  E-value=0.00015  Score=72.49  Aligned_cols=86  Identities=17%  Similarity=0.337  Sum_probs=50.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCC--CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPM--VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFE  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~--~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~  159 (517)
                      .+.+++ +.|..|-...+|++......  ....++.|.+|+.....    .....+.+|..+++.|. +.-..++++.+.
T Consensus        50 ~~~l~v-~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~  124 (379)
T 3feg_A           50 PEELRV-YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL----QGVDSLVLESVMFAILAERSLGPQLYGVFP  124 (379)
T ss_dssp             GGGCCC-EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-------CCHHHHHHHHHHHHHHHHTTSSCCEEEEET
T ss_pred             cCceEE-EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc----chHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence            355554 56777888899999864211  11134678999864321    12334446999998884 333467787766


Q ss_pred             cCceeEEEEEecCCCchh
Q 010140          160 ASHYSCLVMEYCPGGDLY  177 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~  177 (517)
                      ++    +||||++|.+|.
T Consensus       125 ~g----~v~e~i~G~~l~  138 (379)
T 3feg_A          125 EG----RLEQYIPSRPLK  138 (379)
T ss_dssp             TE----EEEECCSEEECC
T ss_pred             Cc----cEEEEecCccCC
Confidence            42    999999986663

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.76  E-value=9.6e-05  Score=75.25  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=27.3

Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSF  267 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~  267 (517)
                      +...++|+|++|.|||++.++ ++|+||+.+.
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~  260 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSF  260 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCcccc
Confidence            456799999999999998776 9999999874

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.72  E-value=8.8e-05  Score=71.84  Aligned_cols=75  Identities=9%  Similarity=0.039  Sum_probs=47.2

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeeeecCcee
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEFEASHYS  164 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~~  164 (517)
                      +.-++.|+.|....+|++  .         .+++|+.....    ........|..+++.+..-++ .+++...  .+.-
T Consensus        20 ~~~i~~l~gG~tN~~~~~--~---------~~vlR~~~~~~----~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~   82 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA--G---------DLCLRIPGKGT----EEYINRANEAVAAREAAKAGVSPEVLHVD--PATG   82 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE--T---------TEEEEEECC--------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTC
T ss_pred             ccceeEcCCcccccccee--e---------eEEEECCCCCc----cceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCC
Confidence            333788999999999998  2         37888876532    111223448888887742223 5666554  3334


Q ss_pred             EEEEEec-CCCchh
Q 010140          165 CLVMEYC-PGGDLY  177 (517)
Q Consensus       165 ~lV~E~~-~gg~L~  177 (517)
                      ++|+||+ +|.+|.
T Consensus        83 ~~v~e~i~~g~~l~   96 (301)
T 3dxq_A           83 VMVTRYIAGAQTMS   96 (301)
T ss_dssp             CEEEECCTTCEECC
T ss_pred             EEEEeecCCCccCC
Confidence            7899999 766653

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.62  E-value=0.00012  Score=70.33  Aligned_cols=80  Identities=14%  Similarity=0.046  Sum_probs=55.7

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC---Cccceeeeeec
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP---FLPTLYAEFEA  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp---nIv~l~~~~~~  160 (517)
                      .+..-++.+|.|..+.||+++..      +++.|.+|+......   .....+..|...|+.|.--   -+++++.+.  
T Consensus        15 ~~v~~v~~~g~G~~~~vyrv~l~------DG~~~~vK~~~~~~~---~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~--   83 (288)
T 3f7w_A           15 REVAAVAERGHSHRWHLYRVELA------DGTPLFVKALPDDAP---ALDGLFRAEALGLDWLGRSFGSPVPQVAGWD--   83 (288)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEET------TSCEEEEEECCTTCC---CCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE--
T ss_pred             CCeEEEEecCCCCCeEEEEEEEC------CCCEEEEEEeCCCCc---chhhHHHHHHHHHHHHHhhCCCCcceEEecc--
Confidence            35677899999999999999865      357899998654321   1123456799999988421   345555542  


Q ss_pred             CceeEEEEEecCCCch
Q 010140          161 SHYSCLVMEYCPGGDL  176 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L  176 (517)
                        .-++||||++++..
T Consensus        84 --~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           84 --DRTLAMEWVDERPP   97 (288)
T ss_dssp             --TTEEEEECCCCCCC
T ss_pred             --CceEEEEeecccCC
Confidence              34799999987654

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.46  E-value=0.00027  Score=72.02  Aligned_cols=81  Identities=22%  Similarity=0.299  Sum_probs=51.3

Q ss_pred             eEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCce
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHY  163 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  163 (517)
                      .-++.|+.|....||++.......  ...++.|.+|+......     ...+..|..+++.|. +.-..++++.+.+   
T Consensus        76 ~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~-----~~~li~E~~~l~~L~~~g~~P~l~~~~~~---  147 (429)
T 1nw1_A           76 LRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET-----ESHLVAESVIFTLLSERHLGPKLYGIFSG---  147 (429)
T ss_dssp             EEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC-----HHHHHHHHHHHHHHHHTTSSSCEEEEETT---
T ss_pred             eEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc-----HHHHHHHHHHHHHHHhCCCCCcEEEEeCC---
Confidence            345678889899999998653111  01246789998843100     022335888888884 3334677877653   


Q ss_pred             eEEEEEecCCCch
Q 010140          164 SCLVMEYCPGGDL  176 (517)
Q Consensus       164 ~~lV~E~~~gg~L  176 (517)
                       .+||||++|.+|
T Consensus       148 -g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 -GRLEEYIPSRPL  159 (429)
T ss_dssp             -EEEECCCCEEEC
T ss_pred             -CEEEEEeCCccc
Confidence             289999987554

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.44  E-value=0.00032  Score=69.95  Aligned_cols=81  Identities=12%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             EEeeeeccceeEEEEEEEecCC---CCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCC-ccceeeeeecCce
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPM---VGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPF-LPTLYAEFEASHY  163 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~---~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~  163 (517)
                      -++.|+.|....||++...+..   ....++.+++|+.....    ........|..+++.+...+ +.++++.+.    
T Consensus        37 ~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~----~~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----  108 (369)
T 3c5i_A           37 RVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV----DELYNTISEFEVYKTMSKYKIAPQLLNTFN----  108 (369)
T ss_dssp             EEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG----GGTSCHHHHHHHHHHHHHTTSSCCEEEEET----
T ss_pred             EEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc----cceecHHHHHHHHHHHHhcCCCCceEEecC----
Confidence            4567888888999999764310   00012578899876431    11112345888888884333 457776552    


Q ss_pred             eEEEEEecCCCch
Q 010140          164 SCLVMEYCPGGDL  176 (517)
Q Consensus       164 ~~lV~E~~~gg~L  176 (517)
                      -++||||++|.+|
T Consensus       109 ~~~v~e~i~G~~l  121 (369)
T 3c5i_A          109 GGRIEEWLYGDPL  121 (369)
T ss_dssp             TEEEEECCCSEEC
T ss_pred             CcEEEEEecCCcC
Confidence            2689999988654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.32  E-value=0.00099  Score=65.05  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=45.9

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC--Cccceeee-----eecCc
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP--FLPTLYAE-----FEASH  162 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp--nIv~l~~~-----~~~~~  162 (517)
                      ..|+ |....||++...      .++.+++|+......    ....+..|..++..|...  .+++++..     ...++
T Consensus        32 ~~l~-g~~n~~y~v~~~------~g~~~vlK~~~~~~~----~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g  100 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDE------DRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG  100 (328)
T ss_dssp             EEEC-CSSSEEEEECCT------TCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT
T ss_pred             Eeec-CcccceEEEEcC------CCCEEEEEEcCCCCC----CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECC
Confidence            4566 888899987543      235689999863211    112344577777777321  24444443     22345


Q ss_pred             eeEEEEEecCCCch
Q 010140          163 YSCLVMEYCPGGDL  176 (517)
Q Consensus       163 ~~~lV~E~~~gg~L  176 (517)
                      ..++|||+++|..+
T Consensus       101 ~~~~l~~~i~G~~~  114 (328)
T 1zyl_A          101 FYFAVFPSVGGRQF  114 (328)
T ss_dssp             EEEEEEECCCCEEC
T ss_pred             EEEEEEEecCCCCC
Confidence            67899999988554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.25  E-value=0.00095  Score=65.41  Aligned_cols=80  Identities=13%  Similarity=-0.033  Sum_probs=41.9

Q ss_pred             EeeeeccceeE-EEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC--CCccceeeeeecCceeE
Q 010140           89 LRRLGSGDIGN-VYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH--PFLPTLYAEFEASHYSC  165 (517)
Q Consensus        89 ~~~LG~G~fG~-Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~~~~~  165 (517)
                      ++.|+.|+... +|+....      .++.+++|......      ...+..|+.+++.+..  -.+.+++.+....+  +
T Consensus        23 ~~~l~gg~s~~~~~r~~~~------~~~~~vlk~~~~~~------~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~   88 (333)
T 3csv_A           23 RTPLAGDASSRRYQRLRSP------TGAKAVLMDWSPEE------GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--L   88 (333)
T ss_dssp             ECC--------CCEEEECT------TCCEEEEEECCTTT------TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--E
T ss_pred             eeECCCCCCCceEEEEEcC------CCCeEEEEECCCCC------CccccHHHHHHHHHHhCCCCCCceeeecCCCC--E
Confidence            44666665554 6676532      13557777654321      0233447778777742  23566776533333  7


Q ss_pred             EEEEecCCCchhHHHHh
Q 010140          166 LVMEYCPGGDLYAARQR  182 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~  182 (517)
                      +|||++.+..+.+.+..
T Consensus        89 ll~e~l~~~~l~~~l~~  105 (333)
T 3csv_A           89 LLIEDLGDALFTEVINN  105 (333)
T ss_dssp             EEECCCCSCBHHHHHHH
T ss_pred             EEEeeCCCcchHHHhcC
Confidence            89999977777665543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.21  E-value=0.0033  Score=64.43  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeeeecCceeEE
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEFEASHYSCL  166 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~~~~l  166 (517)
                      -++.|+.|-...+|++...+     .+..|++|+.....    ...-....|..+|+.|...++ .++++.+.+    .+
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~-----~~~~~vLRi~g~~~----~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~  178 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMS-----KQAKYLIRLYGPKT----DEIINREREKKISCILYNKNIAKKIYVFFTN----GR  178 (458)
T ss_dssp             EEEEECC--CEEEEEEEETT-----TTEEEEEEEECC-C----CSCSCHHHHHHHHHHHTTSSSBCCEEEEETT----EE
T ss_pred             EEEEcCCCeEeEEEEEEECC-----CCceEEEEECCCCh----hhhcCHHHHHHHHHHHHhcCCCCCEEEEeCC----eE
Confidence            45678889999999997643     23678899875421    111112459999999864444 678877742    25


Q ss_pred             EEEecCCCch
Q 010140          167 VMEYCPGGDL  176 (517)
Q Consensus       167 V~E~~~gg~L  176 (517)
                      ||||++|.+|
T Consensus       179 v~e~I~G~~l  188 (458)
T 2qg7_A          179 IEEFMDGYAL  188 (458)
T ss_dssp             EEECCCSEEC
T ss_pred             EEEeeCCccC
Confidence            9999988655

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.99  E-value=0.0012  Score=65.06  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      .++|+|+.+.|||++.++.+.|+||+.+..
T Consensus       207 ~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             EEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             eeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            699999999999999888899999988743

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.69  E-value=0.0034  Score=63.56  Aligned_cols=82  Identities=17%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             eEEeeeeccceeEEEEEEEecCCC--CCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCce
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMV--GLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASHY  163 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~~  163 (517)
                      .-++.|..|-...+|++.......  ...++.|++++.....    ...-...+|..+++.+. +.-..++++.+.    
T Consensus        73 ~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t----~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----  144 (424)
T 3mes_A           73 IEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV----GKFYDSKVELDVFRYLSNINIAPNIIADFP----  144 (424)
T ss_dssp             EEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-----CCCCHHHHHHHHHHHHHTTSSCCEEEEET----
T ss_pred             eEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc----chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----
Confidence            345677778888999998753111  0114678999875431    11222345888888884 333567776443    


Q ss_pred             eEEEEEecCCCch
Q 010140          164 SCLVMEYCPGGDL  176 (517)
Q Consensus       164 ~~lV~E~~~gg~L  176 (517)
                      -++||||++|.+|
T Consensus       145 ~~~I~efI~G~~l  157 (424)
T 3mes_A          145 EGRIEEFIDGEPL  157 (424)
T ss_dssp             TEEEEECCCSEEC
T ss_pred             CCEEEEEeCCccC
Confidence            2789999998665

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=95.72  E-value=0.081  Score=53.05  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=24.4

Q ss_pred             ceeccCCCCceEE------ccCCcEEeccCCCcc
Q 010140          240 IVYRDLKPENVLV------REDGHIMLSDFDLSF  267 (517)
Q Consensus       240 iiHrDLKp~NILl------~~~~~vkL~DFGls~  267 (517)
                      ++|+|+.+.|||+      +.++.+.++||-.|.
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            6899999999999      346789999999884

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=94.42  E-value=0.13  Score=46.51  Aligned_cols=30  Identities=17%  Similarity=0.096  Sum_probs=19.5

Q ss_pred             CcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          362 EYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       362 ~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                      .+.|||... ...+.+.=|+|||+++|.-+-
T Consensus       102 ~~~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          102 PPVAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             -----CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence            466787763 235678889999999999874

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=86.46  E-value=0.07  Score=54.63  Aligned_cols=64  Identities=6%  Similarity=-0.018  Sum_probs=18.1

Q ss_pred             eEEeeeeccceeEEEEEEEecCCCCCCCceeee------eecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           87 RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAM------KVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        87 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAi------K~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      .+.+.||   ||.||++....     ....||+      |........ +.....+.+|..+++.++|||+++.+++-.
T Consensus       145 ~l~~~lG---fG~v~~g~~~~-----~~~~Vav~~~~~~K~~~~~~~~-~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYK-----KHMPVLKETHDERDSTGQDGVS-EKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             CSTTTSS---BCCC--------------CCBGGGC------------------------------------CBCCCEEE
T ss_pred             cccccCC---chhhhcccccc-----cCCchhhhhccCcccccccccc-ccccccccccccccccccccccCCCcceEE
Confidence            4556776   99999999875     2346888      655443322 234455677888999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-34
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	9e-30
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-31
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	8e-26
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	7e-31
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-30
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-27
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-30
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-24
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-29
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	7e-25
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	8e-29
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-12
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	9e-29
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-25
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-28
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-28
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-24
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-28
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-28
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-20
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-27
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	8e-26
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-27
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-21
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-27
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-27
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-27
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-26
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-27
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-26
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-21
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-26
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-25
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-26
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-23
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-26
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	5e-25
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-12
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-25
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-23
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-25
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-11
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	8e-25
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-13
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	9e-25
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-16
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-24
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-14
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-24
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-21
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-24
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-23
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-23
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-14
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-23
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-21
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-23
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-23
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	8e-23
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-22
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-10
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-11
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-22
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-12
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-13
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-22
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-22
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-12
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-22
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-12
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	9e-22
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-17
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-21
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-21
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-21
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-20
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-18
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-19
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-18
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-19
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-15
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	6e-19
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	5e-18
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	7e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-12
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-09
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-18
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-17
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	8e-17
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-17
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-13
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-17
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-14
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-16
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-12
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-13
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-09

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 4e-34
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            AR+ SFVGT +Y++PE+++ +    + D W LG  +Y+++ G  PF+  N       I+
Sbjct: 164 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 223

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS--LKGSVEIKRHEFFKGIN 468
           K    FP              K +DL+ KLLV +  KR+G   ++G   +K H FF+ + 
Sbjct: 224 KLEYDFPE-KFFP--------KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT 274

Query: 469 WALIRSIKPPEVP 481
           W  +    PP++ 
Sbjct: 275 WENLHQQTPPKLT 287

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 9e-30
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 35/187 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + F+  + LG G    V L +            YA+K++++  +    K+     E+ ++
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELAT-----SREYAIKILEKRHIIKENKVPYVTRERDVM 62

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
           + LDHPF   LY  F+        + Y   G+L   +  +    F  +            
Sbjct: 63  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELL--KYIRKIGSFDETCT---------- 110

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                             RFY AE + ALEYLH  GI++RDLKPEN+L+ ED HI ++DF
Sbjct: 111 ------------------RFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDF 152

Query: 264 DLSFKCD 270
             +    
Sbjct: 153 GTAKVLS 159

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 5e-31
 Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 14/137 (10%)

Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
              +A++ +F GT +Y+APE++ GQ +  +VDWW+ GV LYEML G +PF G++ E+   
Sbjct: 154 MLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFH 213

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
           +I      +PR  +            +DL+ KL V+ P+KR+G      +I++H  F+ I
Sbjct: 214 SIRMDNPFYPR-WLEKE--------AKDLLVKLFVREPEKRLGVRG---DIRQHPLFREI 261

Query: 468 NWALI--RSIKPPEVPN 482
           NW  +  + I PP  P 
Sbjct: 262 NWEELERKEIDPPFRPK 278

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 8e-26
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 36/185 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           ++ F L + LG G  G V+L + +         F+A+K + ++ + +   +    +EK +
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKT-----NQFFAIKALKKDVVLMDDDVECTMVEKRV 55

Query: 143 LTM-LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           L++  +HPFL  ++  F+       VMEY  GGDL    Q     +F +S A        
Sbjct: 56  LSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS--CHKFDLSRA-------- 105

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
                                FYAAE +L L++LH  GIVYRDLK +N+L+ +DGHI ++
Sbjct: 106 --------------------TFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIA 145

Query: 262 DFDLS 266
           DF + 
Sbjct: 146 DFGMC 150

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 7e-31
 Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 37/183 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + ++  LG G  G VY  Q +           A KV+D ++    ++L    +E  IL
Sbjct: 12  DFWEIIGELGDGAFGKVYKAQNKET-----SVLAAAKVIDTKS---EEELEDYMVEIDIL 63

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              DHP +  L   F   +   +++E+C GG + A       +    S            
Sbjct: 64  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQI---------- 112

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                             +    +TL AL YLH   I++RDLK  N+L   DG I L+DF
Sbjct: 113 ------------------QVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADF 154

Query: 264 DLS 266
            +S
Sbjct: 155 GVS 157

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 1e-20
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 351 NARSKSFVGTHEYLAPEVI-----SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
             R  SF+GT  ++APEV+       + +    D W+LG+ L EM     P    N  + 
Sbjct: 164 IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRV 223

Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           L+ I K            S  F      +D + K L KN   R      + ++ +H F  
Sbjct: 224 LLKIAKSEPPTLAQPSRWSSNF------KDFLKKCLEKNVDARW----TTSQLLQHPFVT 273

Query: 466 GINWALIRSI 475
             +   IR +
Sbjct: 274 VDSNKPIREL 283

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (297), Expect = 2e-30
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 33/174 (18%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           A+ +   + +  GT +Y+APEV+S + +  ++DWW+ G+ +YEML G TPF   N  KT 
Sbjct: 151 AKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTY 210

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFK 465
             IL   L FP    +          ++DL+S+L+ ++  +R+G+L+    ++K H +FK
Sbjct: 211 EKILNAELRFPP-FFNED--------VKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFK 261

Query: 466 GINWA--LIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHHFDYF 517
            + W   L R+I+ P               Y P + + + D      T  FD +
Sbjct: 262 EVVWEKLLSRNIETP---------------YEPPIQQGQGD------TSQFDKY 294

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (271), Expect = 6e-27
 Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 35/184 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L  F++LR LG+G  G V+L + R+        +YAMKV+ +E +   K++   + E+++
Sbjct: 3   LQDFQILRTLGTGSFGRVHLIRSRHN-----GRYYAMKVLKKEIVVRLKQVEHTNDERLM 57

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L+++ HPF+  ++  F+ +    ++M+Y  GG+L++  ++       ++           
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVA----------- 106

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                              +FYAAE  LALEYLH   I+YRDLKPEN+L+ ++GHI ++D
Sbjct: 107 -------------------KFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITD 147

Query: 263 FDLS 266
           F  +
Sbjct: 148 FGFA 151

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 6e-30
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 12/135 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            A  K+F GT EYLAPEV+    +G AVDWW LGV +YEM+ G  PF  +++E+    IL
Sbjct: 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINW 469
            + + FPR   + S E       + L++ LL K+PK+R+G       E+  H FF  INW
Sbjct: 219 MEEIRFPR---TLSPE------AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

Query: 470 ALI--RSIKPPEVPN 482
             +  + + PP  P 
Sbjct: 270 QDVVQKKLLPPFKPQ 284

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 8e-24
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 35/187 (18%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           +V ++ F  L+ LG G  G V L + +         +YAMK++ +E +  + ++     E
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKAT-----GRYYAMKILRKEVIIAKDEVAHTVTE 55

Query: 140 KVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             +L    HPFL  L   F+     C VMEY  GG+L+    R+    F    A      
Sbjct: 56  SRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER--VFTEERA------ 107

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 RFY AE + ALEYLH   +VYRD+K EN+++ +DGHI 
Sbjct: 108 ----------------------RFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145

Query: 260 LSDFDLS 266
           ++DF L 
Sbjct: 146 ITDFGLC 152

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 1e-29
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 35/188 (18%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L+ F + R LG G  GNVYL + +       +   A+KV+ +  L      H+   E  I
Sbjct: 5   LEDFEIGRPLGKGKFGNVYLAREKQS-----KFILALKVLFKAQLEKAGVEHQLRREVEI 59

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
            + L HP +  LY  F  +    L++EY P G +Y   Q+    +F              
Sbjct: 60  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRT--------- 108

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                                Y  E   AL Y H   +++RD+KPEN+L+   G + ++D
Sbjct: 109 -------------------ATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 149

Query: 263 FDLSFKCD 270
           F  S    
Sbjct: 150 FGWSVHAP 157

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 7e-25
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
               +  + D        ++R  +  GT +YL PE+I G+ H   VD W+LGV  YE L 
Sbjct: 140 GSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV 199

Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL 452
           G  PF+    ++T   I +   TFP   V+           +DLIS+LL  NP +R    
Sbjct: 200 GKPPFEANTYQETYKRISRVEFTFPDF-VTEG--------ARDLISRLLKHNPSQRP--- 247

Query: 453 KGSVEIKRHEFFKG 466
               E+  H +   
Sbjct: 248 -MLREVLEHPWITA 260

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (284), Expect = 8e-29
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 8/187 (4%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           ++   +R +G G  G V+  +    +   P    A+K++  EA A  +       E  ++
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQA--DFQREAALM 70

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              D+P +  L          CL+ EY   GDL    +          S   +       
Sbjct: 71  AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 130

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                     +          A +    + YL     V+RDL   N LV E+  + ++DF
Sbjct: 131 SPGPPPLSCAEQ------LCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADF 184

Query: 264 DLSFKCD 270
            LS    
Sbjct: 185 GLSRNIY 191

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
              +      ++ PE I    + +  D W  GV L+E+  YG  P+ G  +E+ +  +  
Sbjct: 198 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRD 257

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
             +                 +L +L+     K P  R 
Sbjct: 258 GNILACPENCPL--------ELYNLMRLCWSKLPADRP 287

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  114 bits (287), Expect = 9e-29
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 39/190 (20%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           LDH+ +   LG+G  G V+    R          +A K V     + ++ + +   E   
Sbjct: 25  LDHYDIHEELGTGAFGVVHRVTERAT-----GNNFAAKFVMTPHESDKETVRK---EIQT 76

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           +++L HP L  L+  FE  +   ++ E+  GG+L+     +   +     A         
Sbjct: 77  MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN-KMSEDEA--------- 126

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV--REDGHIML 260
                                Y  +    L ++H    V+ DLKPEN++   +    + L
Sbjct: 127 -------------------VEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKL 167

Query: 261 SDFDLSFKCD 270
            DF L+   D
Sbjct: 168 IDFGLTAHLD 177

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  103 bits (258), Expect = 6e-25
 Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             K   GT E+ APEV  G+  G   D W++GV  Y +L G +PF GEN+++TL N+   
Sbjct: 181 SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSC 240

Query: 413 PLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW-A 470
                    S  S++       +D I KLL+ +P  R+       +   H +    N   
Sbjct: 241 DWNMDDSAFSGISEDG------KDFIRKLLLADPNTRM----TIHQALEHPWLTPGNAPG 290

Query: 471 LIRSIKPPEVPNNDLYCKIKKKVYVPKLSKQERDAPYQIPTHH 513
               I            K K   +   L    R + Y     H
Sbjct: 291 RDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKH 333

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (283), Expect = 1e-28
 Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 35/183 (19%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F  LR +G G  G VY  +             A+K +        +K      E   L
Sbjct: 15  KLFSDLREIGHGSFGAVYFARDVRN-----SEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L HP        +   H + LVMEYC G         +  K                 
Sbjct: 70  QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEI---------- 117

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                    L  L YLH   +++RD+K  N+L+ E G + L DF
Sbjct: 118 ------------------AAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 159

Query: 264 DLS 266
             +
Sbjct: 160 GSA 162

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.6 bits (214), Expect = 2e-19
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 350 INARSKSFVGTHEYLAPEVISGQGHG---SAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
           I A + SFVGT  ++APEVI     G     VD W+LG+   E+     P    N    L
Sbjct: 164 IMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSAL 223

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            +I +      + G  S          ++ +   L K P+ R      S  + +H F  
Sbjct: 224 YHIAQNESPALQSGHWSE-------YFRNFVDSCLQKIPQDRP----TSEVLLKHRFVL 271

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  114 bits (285), Expect = 2e-28
 Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 39/190 (20%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
            D++ +L  LGSG  G V+ C  +          +  K ++      +  +     E  I
Sbjct: 28  YDYYDILEELGSGAFGVVHRCVEKAT-----GRVFVAKFINTPYPLDKYTVKN---EISI 79

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           +  L HP L  L+  FE  +   L++E+  GG+L+  R      +   +           
Sbjct: 80  MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELF-DRIAAEDYKMSEAEV--------- 129

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR--EDGHIML 260
                                Y  +    L+++H   IV+ D+KPEN++    +   + +
Sbjct: 130 -------------------INYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKI 170

Query: 261 SDFDLSFKCD 270
            DF L+ K +
Sbjct: 171 IDFGLATKLN 180

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  102 bits (256), Expect = 1e-24
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           +   K    T E+ APE++  +  G   D W +GV  Y +L G +PF GE++ +TL N+ 
Sbjct: 182 DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVK 241

Query: 411 KKPLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           +    F     SS S E       +D I  LL K P+KR+       +   H + KG + 
Sbjct: 242 RCDWEFDEDAFSSVSPE------AKDFIKNLLQKEPRKRL----TVHDALEHPWLKGDHS 291

Query: 470 ALIRSIKPPEVPNNDLYCKIKKK 492
            L   I  P    N +  KIK+K
Sbjct: 292 NLTSRI--PSSRYNKIRQKIKEK 312

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 4e-28
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           ++    + LGSG  G V                 A+K++  +A +  ++   +++ K++ 
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL-KMMT 95

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
            +  H  +  L      S    L+ EYC  GDL     R   ++F     ++        
Sbjct: 96  QLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLN-YLRSKREKFSEDEIEYENQKRLEE 154

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
             +       D+        +A +    +E+L     V+RDL   NVLV     + + DF
Sbjct: 155 EEDLNVLTFEDL------LCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDF 208

Query: 264 DLS 266
            L+
Sbjct: 209 GLA 211

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 2e-13
 Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 356 SFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILKKPL 414
           +     +++APE +    +    D W+ G+ L+E+   G  P+ G   +     +++   
Sbjct: 225 NARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGF 284

Query: 415 TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
              +   ++        ++  ++      + +KR 
Sbjct: 285 KMDQPFYATE-------EIYIIMQSCWAFDSRKRP 312

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 4e-28
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 38/184 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D F  +  LG+G+ G V+    +           A K++  E        ++   E  +L
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPS-----GLVMARKLIHLEI--KPAIRNQIIRELQVL 58

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              + P++   Y  F +     + ME+  GG L    ++    R                
Sbjct: 59  HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQIL---------- 106

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH-MMGIVYRDLKPENVLVREDGHIMLSD 262
                                +   +  L YL     I++RD+KP N+LV   G I L D
Sbjct: 107 ------------------GKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCD 148

Query: 263 FDLS 266
           F +S
Sbjct: 149 FGVS 152

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 6e-20
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 39/154 (25%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
           ++ + SFVGT  Y++PE + G  +    D W++G+ L EM  G  P    + ++  +   
Sbjct: 157 DSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFG 216

Query: 411 KKPLTFPRIGVSSSKEFEEVVK-----------------------------------LQD 435
            +            +     +                                     QD
Sbjct: 217 CQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQD 276

Query: 436 LISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
            ++K L+KNP +R        ++  H F K  + 
Sbjct: 277 FVNKCLIKNPAERADLK----QLMVHAFIKRSDA 306

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 38/187 (20%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           ++ F + R +G G  G VY C+  +         YAMK +D++ + +++    A  E+++
Sbjct: 3   MNDFSVHRIIGRGGFGEVYGCRKADT-----GKMYAMKCLDKKRIKMKQGETLALNERIM 57

Query: 143 LTML---DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
           L+++   D PF+  +   F        +++   GGDL+    +                 
Sbjct: 58  LSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADM-------- 109

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                 RFYAAE +L LE++H   +VYRDLKP N+L+ E GH+ 
Sbjct: 110 ----------------------RFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVR 147

Query: 260 LSDFDLS 266
           +SD  L+
Sbjct: 148 ISDLGLA 154

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (265), Expect = 8e-26
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEML 391
           D H    + D  +  +    +  + VGTH Y+APEV+  G  + S+ DW++LG  L+++L
Sbjct: 141 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 200

Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS 451
            G +PF+    +               +  S S E      L+ L+  LL ++  +R+G 
Sbjct: 201 RGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPE------LRSLLEGLLQRDVNRRLGC 254

Query: 452 LKGSV-EIKRHEFFKGINWALI--RSIKPPEVPNND 484
           L     E+K   FF+ ++W ++  +   PP +P   
Sbjct: 255 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRG 290

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-27
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 39/183 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
               + +R+GSG  G VY  +             A+K+++  A    ++L     E  +L
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD--------VAVKMLNVTAPT-PQQLQAFKNEVGVL 58

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
               H  +      +  +    +V ++C G  LY         +F +             
Sbjct: 59  RKTRHVNILLFMG-YSTAPQLAIVTQWCEGSSLYHHLHIIET-KFEMIKL---------- 106

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                A +T   ++YLH   I++RDLK  N+ + ED  + + DF
Sbjct: 107 ------------------IDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDF 148

Query: 264 DLS 266
            L+
Sbjct: 149 GLA 151

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 3e-18
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHG---SAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
           + + +   G+  ++APEVI  Q         D +  G+ LYE++ G  P+   NN   +I
Sbjct: 160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 219

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            ++ +    P +    S   +    ++ L+++ L K   +R 
Sbjct: 220 FMVGRGYLSPDLSKVRSNCPKA---MKRLMAECLKKKRDERP 258

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 2e-27
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 37/188 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           ++ + L++ LG G  G V L   R       +   A+K+VD +             E  I
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVT-----EEAVAVKIVDMKR--AVDCPENIKKEICI 56

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
             ML+H  +   Y      +   L +EYC GG+                        LF 
Sbjct: 57  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE------------------------LFD 92

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
               ++G    D       + +  + +  + YLH +GI +RD+KPEN+L+ E  ++ +SD
Sbjct: 93  RIEPDIGMPEPDA------QRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISD 146

Query: 263 FDLSFKCD 270
           F L+    
Sbjct: 147 FGLATVFR 154

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 2e-21
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
                 GT  Y+APE++  +  H   VD W+ G+ L  ML G  P+   ++     +  K
Sbjct: 161 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK 220

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
           +  T+                   L+ K+LV+NP  RI       +IK+  ++ 
Sbjct: 221 EKKTYLNPWKKIDSA------PLALLHKILVENPSARI----TIPDIKKDRWYN 264

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-27
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             K+  GT E++APE+++ +  G   D W++GV  Y +L G +PF G+  ++TL N+   
Sbjct: 172 EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV 231

Query: 413 PLTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW-- 469
              F        + F       +D I +LLVK+PKKR+       +  +H + K  +   
Sbjct: 232 NYEFED------EYFSNTSALAKDFIRRLLVKDPKKRM----TIQDSLQHPWIKPKDTQQ 281

Query: 470 ALIRSIKPPE 479
           AL  +   P+
Sbjct: 282 ALSSAWSHPQ 291

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 5e-21
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 42/194 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK---LHRADMEK 140
           D++     LGSG    V  C+ ++         YA K + +      ++       + E 
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKST-----GLQYAAKFIKKRRTKSSRRGVSREDIEREV 64

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
            IL  + HP + TL+  +E      L++E   GG+L+     +  +      A       
Sbjct: 65  SILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEA------- 115

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG---- 256
                                  +  + L  + YLH + I + DLKPEN+++ +      
Sbjct: 116 ---------------------TEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKP 154

Query: 257 HIMLSDFDLSFKCD 270
            I + DF L+ K D
Sbjct: 155 RIKIIDFGLAHKID 168

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-27
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           +     + LG+G  G V        +        A+K++   A     +      E  +L
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVL 80

Query: 144 TML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           + L +H  +  L         + ++ EYC  GDL    +R+        ++  +      
Sbjct: 81  SYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIME---- 136

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
              + L     D+        ++ +    + +L     ++RDL   N+L+       + D
Sbjct: 137 --DDELALDLEDL------LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICD 188

Query: 263 FDLSFKCD 270
           F L+    
Sbjct: 189 FGLARDIK 196

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
              +     +++APE I    +    D W+ G+FL+E+   G++P+ G   +     ++K
Sbjct: 203 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIK 262

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           +         + +       ++ D++      +P KR 
Sbjct: 263 EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRP 293

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (274), Expect = 4e-27
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 35/222 (15%)

Query: 45  SSSAADQTSLYNSHKPHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQ 104
           +++AA + S   S K   A        K    +Q    LD F  ++ LG+G  G V L +
Sbjct: 2   NAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVK 61

Query: 105 IRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS 164
            +          YAMK++D++ +   K++     EK IL  ++ PFL  L   F+ +   
Sbjct: 62  HKES-----GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNL 116

Query: 165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFY 224
            +VMEY  GG++++  +R    RF    A                            RFY
Sbjct: 117 YMVMEYVAGGEMFSHLRRI--GRFSEPHA----------------------------RFY 146

Query: 225 AAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
           AA+ +L  EYLH + ++YRDLKPEN+L+ + G+I ++DF  +
Sbjct: 147 AAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (266), Expect = 5e-26
 Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKT 405
            A+ +  R+ +  GT E LAPE+I  +G+  AVDWW LGV +YEM  G  PF  +   + 
Sbjct: 187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246

Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFF 464
              I+   + FP    SS         L+DL+  LL  +  KR G+LK  V +IK H++F
Sbjct: 247 YEKIVSGKVRFPS-HFSSD--------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297

Query: 465 KGINWALI--RSIKPPEVPN 482
              +W  I  R ++ P +P 
Sbjct: 298 ATTDWIAIYQRKVEAPFIPK 317

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 7e-27
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 39/190 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + + +L  +G+G  G     + ++            K +D  ++    +      E  +L
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSD-----GKILVWKELDYGSM-TEAEKQMLVSEVNLL 57

Query: 144 TMLDHPFLPTLYAEF--EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
             L HP +   Y       +    +VMEYC GGDL +   +   +R  +           
Sbjct: 58  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFV------ 111

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG-----IVYRDLKPENVLVREDG 256
                                    +  LAL+  H        +++RDLKP NV +    
Sbjct: 112 --------------------LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ 151

Query: 257 HIMLSDFDLS 266
           ++ L DF L+
Sbjct: 152 NVKLGDFGLA 161

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-19
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 348 EPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLI 407
               + +K+FVGT  Y++PE ++   +    D W+LG  LYE+     PF   + ++   
Sbjct: 165 NHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG 224

Query: 408 NILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEF 463
            I +          S          L ++I+++L      R        EI  +  
Sbjct: 225 KIREGKFRRIPYRYSDE--------LNEIITRMLNLKDYHRP----SVEEILENPL 268

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  106 bits (265), Expect = 2e-26
 Identities = 41/194 (21%), Positives = 69/194 (35%), Gaps = 42/194 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA------IRKKLHRAD 137
           +++     LG G    V  C  +          YA+K++D           +++      
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPT-----CKEYAVKIIDVTGGGSFSAEEVQELREATL 57

Query: 138 MEKVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
            E  IL  +  HP +  L   +E + +  LV +    G+L+     +             
Sbjct: 58  KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKET--- 112

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                                    R      L  +  LH + IV+RDLKPEN+L+ +D 
Sbjct: 113 -------------------------RKIMRALLEVICALHKLNIVHRDLKPENILLDDDM 147

Query: 257 HIMLSDFDLSFKCD 270
           +I L+DF  S + D
Sbjct: 148 NIKLTDFGFSCQLD 161

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 91.7 bits (227), Expect = 2e-21
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 339 LLDDPEVVAEPINARSKSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEMLY 392
           L D           + +   GT  YLAPE+I         G+G  VD W+ GV +Y +L 
Sbjct: 151 LTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA 210

Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVK-LQDLISKLLVKNPKKRIGS 451
           G+ PF        L  I+     F       S E+++    ++DL+S+ LV  P+KR   
Sbjct: 211 GSPPFWHRKQMLMLRMIMSGNYQFG------SPEWDDYSDTVKDLVSRFLVVQPQKRY-- 262

Query: 452 LKGSVEIKRHEFFK 465
              + E   H FF+
Sbjct: 263 --TAEEALAHPFFQ 274

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 4e-26
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 12/130 (9%)

Query: 359 GTHEYLAPEVISG--QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTF 416
           GT EY+AP+++ G   GH  AVDWW+LGV +YE+L G +PF  +  + +   I ++ L  
Sbjct: 192 GTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKS 251

Query: 417 -PRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSV-EIKRHEFFKGINWALI-- 472
            P      S         +DLI +LL+K+PKKR+G       EIK H FF+ INW  +  
Sbjct: 252 EPPYPQEMSAL------AKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAA 305

Query: 473 RSIKPPEVPN 482
           + +  P  P 
Sbjct: 306 KKVPAPFKPV 315

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-25
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 34/193 (17%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK-LHRADM 138
           +VG+++F LL+ LG+G  G V+L   R          YAMKV+ +  +  + K       
Sbjct: 20  KVGIENFELLKVLGTGAYGKVFLV--RKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRT 77

Query: 139 EKVILTMLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
           E+ +L  +   PFL TL+  F+      L+++Y  GG+L                     
Sbjct: 78  ERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGEL--------------------- 116

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
              F        F   +V ++        E +LALE+LH +GI+YRD+K EN+L+  +GH
Sbjct: 117 ---FTHLSQRERFTEHEVQIYV------GEIVLALEHLHKLGIIYRDIKLENILLDSNGH 167

Query: 258 IMLSDFDLSFKCD 270
           ++L+DF LS +  
Sbjct: 168 VVLTDFGLSKEFV 180

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 4e-26
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 39/187 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             +    ++G G  G VY                A++ ++ +    ++ +     E +++
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVAT-----GQEVAIRQMNLQQQPKKELIIN---EILVM 71

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
               +P +      +       +VMEY  GG L             I             
Sbjct: 72  RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQI------------- 118

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                  E L ALE+LH   +++RD+K +N+L+  DG + L+DF
Sbjct: 119 ------------------AAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 160

Query: 264 DLSFKCD 270
               +  
Sbjct: 161 GFCAQIT 167

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (245), Expect = 1e-23
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            ++  + VGT  ++APEV++ + +G  VD W+LG+   EM+ G  P+  EN  + L  I 
Sbjct: 170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIA 229

Query: 411 KKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
                  +     S  F      +D +++ L  + +KR      + E+ +H+F K
Sbjct: 230 TNGTPELQNPEKLSAIF------RDFLNRCLDMDVEKRG----SAKELLQHQFLK 274

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  105 bits (263), Expect = 9e-26
 Identities = 67/390 (17%), Positives = 113/390 (28%), Gaps = 101/390 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D ++L+R+LG G    V+                 +K++         K  +   E  IL
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINIT-----NNEKVVVKILKPV------KKKKIKREIKIL 83

Query: 144 TML-DHPFLPTLYAEFE--ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
             L   P + TL    +   S    LV E+    D     Q                   
Sbjct: 84  ENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDI------------ 131

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV-REDGHIM 259
                                RFY  E L AL+Y H MGI++RD+KP NV++  E   + 
Sbjct: 132 ---------------------RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLR 170

Query: 260 LSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK 319
           L D+ L+            +      E   + +      P            +       
Sbjct: 171 LIDWGLA------------EFYHPGQEYNVRVASRYFKGPEL----LVDYQMYDYS---- 210

Query: 320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVD 379
                     +D             ++A  I  +   F G   Y     I+ +  G+   
Sbjct: 211 ----------LDMWSL-------GCMLASMIFRKEPFFHGHDNYDQLVRIA-KVLGTEDL 252

Query: 380 WWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISK 439
           +  +  +  E+        G ++ K       +           S E        D + K
Sbjct: 253 YDYIDKYNIELDPRFNDILGRHSRKRW-----ERFVHSENQHLVSPEA------LDFLDK 301

Query: 440 LLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           LL  + + R+ +     E   H +F  +  
Sbjct: 302 LLRYDHQSRLTAR----EAMEHPYFYTVVK 327

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (256), Expect = 5e-25
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 33/186 (17%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           + +   ++ + +G+G+ G V    ++ P  G  + F A+K +        K+      E 
Sbjct: 23  IDISCVKIEQVIGAGEFGEVCSGHLKLP--GKREIFVAIKTLKSGY--TEKQRRDFLSEA 78

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
            I+   DHP +  L      S    ++ E+   G L +  ++  G+              
Sbjct: 79  SIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQ-------------- 124

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                       T + L              ++YL  M  V+RDL   N+LV  +    +
Sbjct: 125 -----------FTVIQL----VGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKV 169

Query: 261 SDFDLS 266
           SDF LS
Sbjct: 170 SDFGLS 175

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
            +        + APE I  +   SA D W+ G+ ++E++ YG  P+    N+  +  I +
Sbjct: 189 SALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQ 248

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                P +   S         L  L+     K+   R 
Sbjct: 249 DYRLPPPMDCPS--------ALHQLMLDCWQKDRNHRP 278

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (256), Expect = 7e-25
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 351 NARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINIL 410
            +   +  GT  Y+APEV++ + +  AVD W++GV  Y +L G  PF  EN+ K    IL
Sbjct: 163 GSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQIL 222

Query: 411 KKPLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
           K    F        S         +D I  L+ K+P+KR        +  +H +  G   
Sbjct: 223 KAEYEFDSPYWDDISDS------AKDFIRHLMEKDPEKRF----TCEQALQHPWIAGDTA 272

Query: 470 A--LIRSIKPPEVPNNDLYCKIKKKV 493
               I      ++  N    K K+  
Sbjct: 273 LDKNIHQSVSEQIKKNFAKSKWKQAF 298

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.6 bits (245), Expect = 2e-23
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 40/190 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D +     LG+G    V L + +       Q   A+K + ++AL    K    + E  +L
Sbjct: 9   DIYDFRDVLGTGAFSEVILAEDKRT-----QKLVAIKCIAKKAL--EGKEGSMENEIAVL 61

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             + HP +  L   +E+  +  L+M+   GG+L+     +    +    A          
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK--GFYTERDA---------- 109

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVR---EDGHIML 260
                                  + L A++YLH +GIV+RDLKPEN+L     ED  IM+
Sbjct: 110 ------------------SRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMI 151

Query: 261 SDFDLSFKCD 270
           SDF LS   D
Sbjct: 152 SDFGLSKMED 161

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 7e-25
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 39/187 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           +  +L+ RLG+G  G V++               A+K + + +++    L     E  ++
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNG------HTKVAVKSLKQGSMSPDAFLA----EANLM 62

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L H  L  LYA         ++ EY   G L    +   G +  I+            
Sbjct: 63  KQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKL---------- 111

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                AA+    + ++     ++RDL+  N+LV +     ++DF
Sbjct: 112 ------------------LDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADF 153

Query: 264 DLSFKCD 270
            L+   +
Sbjct: 154 GLARLIE 160

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
             +      ++ APE I+        D W+ G+ L E++ +G  P+ G  N + + N+ +
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                               +L  L+     + P+ R 
Sbjct: 226 GYRMVRPDNCPE--------ELYQLMRLCWKERPEDRP 255

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 8e-25
 Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 39/183 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
                L+ LG+G  G V   + R       Q   A+K++   +++  + +     E  ++
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRG------QYDVAIKMIKEGSMSEDEFIE----EAKVM 53

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L H  L  LY          ++ EY   G L    +    +                 
Sbjct: 54  MNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ--------------- 98

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                  +   A+EYL     ++RDL   N LV + G + +SDF
Sbjct: 99  --------------TQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDF 144

Query: 264 DLS 266
            LS
Sbjct: 145 GLS 147

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
            S        +  PEV+      S  D W  GV ++E+   G  P++   N +T  +I +
Sbjct: 157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ 216

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
               +     S         K+  ++     +   +R 
Sbjct: 217 GLRLYRPHLASE--------KVYTIMYSCWHEKADERP 246

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 9e-25
 Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 32/186 (17%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           +G    RLL +LG G  G V   +   P         A+K +  + L+  + +     E 
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAP--SGKTVSVAVKCLKPDVLSQPEAMDDFIREV 62

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
             +  LDH  L  LY          +V E  P G L    ++  G  F + +        
Sbjct: 63  NAMHSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQG-HFLLGTL------- 113

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                  YA +    + YL     ++RDL   N+L+     + +
Sbjct: 114 ---------------------SRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKI 152

Query: 261 SDFDLS 266
            DF L 
Sbjct: 153 GDFGLM 158

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 6e-16
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
             +       + APE +  +    A D W  GV L+EM  YG  P+ G N  + L  I K
Sbjct: 170 MQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 229

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           +    PR              + +++ +     P+ R 
Sbjct: 230 EGERLPRPEDCPQ-------DIYNVMVQCWAHKPEDRP 260

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 1e-24
 Identities = 42/184 (22%), Positives = 64/184 (34%), Gaps = 41/184 (22%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           + +   +LL+ +G G+ G+V L   R   V       A+K +  +  A  +       E 
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRGNKV-------AVKCIKND--ATAQAFLA---EA 51

Query: 141 VILTMLDHPFLPTLY-AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
            ++T L H  L  L     E      +V EY   G L    + +     G          
Sbjct: 52  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL------ 105

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                   ++ +   A+EYL     V+RDL   NVLV ED    
Sbjct: 106 ----------------------LKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAK 143

Query: 260 LSDF 263
           +SDF
Sbjct: 144 VSDF 147

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTL 406
            +  ++   +     ++ APE +  +   +  D W+ G+ L+E+             K +
Sbjct: 150 TKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV 209

Query: 407 INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR--IGSLKGSVE-IKRHE 462
           +  ++K                    + +++      +   R     L+  +E IK HE
Sbjct: 210 VPRVEKGYKMDAPDGCPP-------AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 261

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 39/191 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D + L   LG G +  V+L +             A+KV+  +         R   E    
Sbjct: 7   DRYELGEILGFGGMSEVHLARDLRL-----HRDVAVKVLRADLARDPSFYLRFRREAQNA 61

Query: 144 TMLDHPFLPTLYAEFE----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
             L+HP +  +Y   E    A     +VMEY  G  L      +         A      
Sbjct: 62  AALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRA------ 113

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                     A+   AL + H  GI++RD+KP N+++     + 
Sbjct: 114 ----------------------IEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVK 151

Query: 260 LSDFDLSFKCD 270
           + DF ++    
Sbjct: 152 VMDFGIARAIA 162

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 91.0 bits (225), Expect = 5e-21
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
           ++ + +GT +YL+PE   G    +  D ++LG  LYE+L G  PF G++        +++
Sbjct: 170 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 229

Query: 413 PLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGS 451
               P       S +      L  ++ K L KNP+ R  +
Sbjct: 230 DPIPPSARHEGLSAD------LDAVVLKALAKNPENRYQT 263

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 9e-24
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 36/188 (19%)

Query: 84  DHFRLL-RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           D+  +    LG G+ G+V     R     +     A+KV+ +     +        E  I
Sbjct: 8   DNLLIADIELGCGNFGSVRQGVYRMRKKQID---VAIKVLKQGTE--KADTEEMMREAQI 62

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           +  LD+P++  L    +A     LVME   GG L+        +   +S+          
Sbjct: 63  MHQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPLH-KFLVGKREEIPVSNV--------- 111

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                                   +  + ++YL     V+RDL   NVL+    +  +SD
Sbjct: 112 -------------------AELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISD 152

Query: 263 FDLSFKCD 270
           F LS    
Sbjct: 153 FGLSKALG 160

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 1e-13
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
              +     ++ APE I+ +   S  D W+ GV ++E L YG  P+K     + +  I +
Sbjct: 168 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ 227

Query: 412 -KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            K +  P        E      L  L+S   +   + R        +  R  ++ 
Sbjct: 228 GKRMECPP---ECPPE------LYALMSDCWIYKWEDRP-DFLTVEQRMRACYYS 272

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 3e-23
 Identities = 65/409 (15%), Positives = 117/409 (28%), Gaps = 95/409 (23%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           L  ++ L+ +GSG  G V                 A+K + R     +    RA  E V+
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAV-----LDRNVAIKKLSRP-FQNQTHAKRAYRELVL 69

Query: 143 LTMLDHPFLPTLYAEF------EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFV 196
           +  ++H  + +L   F      E      LVME          +     +R         
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERM-------- 121

Query: 197 FFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDG 256
                                     +   + L  +++LH  GI++RDLKP N++V+ D 
Sbjct: 122 -------------------------SYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC 156

Query: 257 HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN 316
            + + DF L+                           P   T           + + +  
Sbjct: 157 TLKILDFGLARTAG-----------------TSFMMTPYVVTRYYRAPEVILGMGYKENV 199

Query: 317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGS 376
              +V                          E +  +       +     +VI   G   
Sbjct: 200 DIWSVGCIMG---------------------EMVRHKILFPGRDYIDQWNKVIEQLGTPC 238

Query: 377 AVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDL 436
                 L   +   +     + G    K   + L    +      +S          +DL
Sbjct: 239 PEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQ--------ARDL 290

Query: 437 ISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDL 485
           +SK+LV +P KRI       +  +H +             PP++ +  L
Sbjct: 291 LSKMLVIDPAKRISVD----DALQHPYINVWYDPAEVEAPPPQIYDKQL 335

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 3e-23
 Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 39/187 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           +  RL  +LG G  G V++               A+K +    ++    L     E  ++
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTR------VAIKTLKPGTMSPEAFLQ----EAQVM 66

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L H  L  LYA         +V EY   G L    + + GK   +             
Sbjct: 67  KKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQL---------- 115

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                AA+    + Y+  M  V+RDL+  N+LV E+    ++DF
Sbjct: 116 ------------------VDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADF 157

Query: 264 DLSFKCD 270
            L+   +
Sbjct: 158 GLARLIE 164

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 5e-14
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             +      ++ APE           D W+ G+ L E+             + +++ +++
Sbjct: 170 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 229

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI 472
               P               L DL+ +   K P++R  + +  ++    ++F        
Sbjct: 230 GYRMPCPPECPE-------SLHDLMCQCWRKEPEERP-TFE-YLQAFLEDYFT------- 273

Query: 473 RSIKPPEVPNNDL 485
            S +P   P  +L
Sbjct: 274 -STEPQYQPGENL 285

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (240), Expect = 4e-23
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
            +K+ +GT E++APE+   + +  +VD +  G+ + EM     P+    N   +   +  
Sbjct: 169 FAKAVIGTPEFMAPEMYEEK-YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS 227

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
            +        +  E      ++++I   + +N  +R        ++  H FF+
Sbjct: 228 GVKPASFDKVAIPE------VKEIIEGCIRQNKDERY----SIKDLLNHAFFQ 270

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 2e-21
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
            +    +G G    VY        V       A   +    L  + +  R   E  +L  
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTV-----EVAWCELQDRKL-TKSERQRFKEEAEMLKG 64

Query: 146 LDHPFLPTLYAEFEAS----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           L HP +   Y  +E++        LV E    G L     +   KRF +   K +     
Sbjct: 65  LQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL-----KTYLKRFKVMKIKVL----- 114

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG--IVYRDLKPENVLVR-EDGHI 258
                               R +  + L  L++LH     I++RDLK +N+ +    G +
Sbjct: 115 --------------------RSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSV 154

Query: 259 MLSDFDLS 266
            + D  L+
Sbjct: 155 KIGDLGLA 162

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 4e-23
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 40/189 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + + +   LG G+ G V+ C   +      +  Y  K V  +             E  IL
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSS-----KKTYMAKFVKVK----GTDQVLVKKEISIL 55

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
            +  H  +  L+  FE+     ++ E+  G D++  R                       
Sbjct: 56  NIARHRNILHLHESFESMEELVMIFEFISGLDIF-ERINTSAFELNEREI---------- 104

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV--REDGHIMLS 261
                               Y  +   AL++LH   I + D++PEN++   R    I + 
Sbjct: 105 ------------------VSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKII 146

Query: 262 DFDLSFKCD 270
           +F  + +  
Sbjct: 147 EFGQARQLK 155

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 5e-23
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
             +      EY APEV       +A D W+LG  +Y +L G  PF  E N++ + NI+  
Sbjct: 159 NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNA 218

Query: 413 PLTFPRIGVSSSKEFEEV-VKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG----I 467
             TF        + F+E+ ++  D + +LLVK  K R+     + E  +H + K     +
Sbjct: 219 EYTFD------EEAFKEISIEAMDFVDRLLVKERKSRM----TASEALQHPWLKQKIERV 268

Query: 468 NWALIRSIKP 477
           +  +IR++K 
Sbjct: 269 STKVIRTLKH 278

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 8e-23
 Identities = 59/383 (15%), Positives = 103/383 (26%), Gaps = 96/383 (25%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           +  +  L ++G G  G V+  + R           A+K V  +          A  E  +
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRET-----HEIVALKRVRLDDDD-EGVPSSALREICL 54

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  L H  +  L+    +     LV E+C                               
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFC------------------------------D 84

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                              + +  + L  L + H   +++RDLKP+N+L+  +G + L++
Sbjct: 85  QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLAN 144

Query: 263 FDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT 322
           F L+                         S        +P    F +  +       +  
Sbjct: 145 FGLARAFG---------------IPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189

Query: 323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWT 382
                                 + AE  NA    F G       + I          +  
Sbjct: 190 C---------------------IFAELANAGRPLFPGNDVDDQLKRI----------FRL 218

Query: 383 LGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLV 442
           LG    E     T                     P++    +         +DL+  LL 
Sbjct: 219 LGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKL----NATG------RDLLQNLLK 268

Query: 443 KNPKKRIGSLKGSVEIKRHEFFK 465
            NP +RI +     E  +H +F 
Sbjct: 269 CNPVQRISAE----EALQHPYFS 287

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 1e-22
 Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           D  +L + LG G  G V                 A+K++   A     +   ++  K+++
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE-LKILI 71

Query: 144 TMLDHPFLPTL-YAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
            +  H  +  L  A  +      +++E+C  G+L    + +  +      A    +  F 
Sbjct: 72  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 131

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
              + +               Y+ +    +E+L     ++RDL   N+L+ E   + + D
Sbjct: 132 TLEHLI--------------CYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 177

Query: 263 FDLSFKCDVVPKLLR 277
           F L+      P  +R
Sbjct: 178 FGLARDIYKDPDYVR 192

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 347 AEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT-TPFKGENNEKT 405
            +P   R        +++APE I  + +    D W+ GV L+E+     +P+ G   ++ 
Sbjct: 186 KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 245

Query: 406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
               LK+         ++        ++   +       P +R 
Sbjct: 246 FCRRLKEGTRMRAPDYTTP-------EMYQTMLDCWHGEPSQRP 282

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (237), Expect = 1e-22
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 48/207 (23%)

Query: 60  PHKANQAAWEAMKRLRRAQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAM 119
           P   N   WE           +      +  +LG G  G VY    +           A+
Sbjct: 4   PSSPNYDKWE-----------MERTDITMKHKLGGGQYGEVYEGVWKKY-----SLTVAV 47

Query: 120 KVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAA 179
           K +  + + + + L     E  ++  + HP L  L           ++ E+   G+L   
Sbjct: 48  KTLKEDTMEVEEFLK----EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 103

Query: 180 RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG 239
            +    +                                    + A +   A+EYL    
Sbjct: 104 LRECNRQEVSAVVL----------------------------LYMATQISSAMEYLEKKN 135

Query: 240 IVYRDLKPENVLVREDGHIMLSDFDLS 266
            ++RDL   N LV E+  + ++DF LS
Sbjct: 136 FIHRDLAARNCLVGENHLVKVADFGLS 162

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (148), Expect = 5e-11
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
                    ++ APE ++        D W  GV L+E+           +   +  +L+K
Sbjct: 172 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 231

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                R             K+ +L+      NP  R 
Sbjct: 232 DYRMERPEGCPE-------KVYELMRACWQWNPSDRP 261

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 1e-22
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 21/271 (7%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
            +  +  +    +G G+ G V   +I+   +   +   A+K +   A   +        E
Sbjct: 6   VLDWNDIKFQDVIGEGNFGQVLKARIKKDGL---RMDAAIKRMKEYA--SKDDHRDFAGE 60

Query: 140 KVILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
             +L  L  HP +  L    E   Y  L +EY P G+L    ++                
Sbjct: 61  LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSR---------VLETD 111

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
             F    +    + +          +AA+    ++YL     ++RDL   N+LV E+   
Sbjct: 112 PAFAIANSTASTLSSQQ-----LLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVA 166

Query: 259 MLSDFDLSFKCDVVPKLLRPKLSFEAI-EKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK 317
            ++DF LS   +V  K    +L    +  +    S+ +  + +         +       
Sbjct: 167 KIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP 226

Query: 318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAE 348
              +T   + E++   +  ++ L+  + V +
Sbjct: 227 YCGMTCAELYEKLPQGYRLEKPLNCDDEVYD 257

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML- 391
           +++  ++ D      + +  +         ++A E ++   + +  D W+ GV L+E++ 
Sbjct: 162 ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 221

Query: 392 YGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
            G TP+ G    +    + +       +            ++ DL+ +   + P +R 
Sbjct: 222 LGGTPYCGMTCAELYEKLPQGYRLEKPLNCDD--------EVYDLMRQCWREKPYERP 271

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 2e-22
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 39/182 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
                ++ +GSG  G V+L    N      +   A+K +   A++    +     E  ++
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLN------KDKVAIKTIREGAMSEEDFIE----EAEVM 54

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             L HP L  LY         CLV E+   G L                           
Sbjct: 55  MKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL-------------------------SD 89

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
           +      +    TL         +    + YL    +++RDL   N LV E+  I +SDF
Sbjct: 90  YLRTQRGLFAAETL----LGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDF 145

Query: 264 DL 265
            +
Sbjct: 146 GM 147

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           S       ++ +PEV S   + S  D W+ GV ++E+           +   ++  +   
Sbjct: 159 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG 218

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
               +  ++S+        +  +++    + P+ R 
Sbjct: 219 FRLYKPRLAST-------HVYQIMNHCWKERPEDRP 247

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 3e-22
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 48/196 (24%)

Query: 83  LDHFRLLRR-LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
           +D +++  + LG G  G V     +       Q  +A+K++     A R+        ++
Sbjct: 10  IDDYKVTSQVLGLGINGKVLQIFNKRT-----QEKFALKMLQDCPKARREV-------EL 57

Query: 142 ILTMLDHPFLPTLYAEFEASH----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
                  P +  +   +E  +       +VME   GG+L++  Q +  + F    A    
Sbjct: 58  HWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREA---- 113

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV---RE 254
                                            A++YLH + I +RD+KPEN+L    R 
Sbjct: 114 ------------------------SEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRP 149

Query: 255 DGHIMLSDFDLSFKCD 270
           +  + L+DF  + +  
Sbjct: 150 NAILKLTDFGFAKETT 165

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 3e-18
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN----EKTLIN 408
              +   T  Y+APEV+  + +  + D W+LGV +Y +L G  PF   +           
Sbjct: 169 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTR 228

Query: 409 ILKKPLTFPRIGVSS-SKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
           I      FP    S  S+E      ++ LI  LL   P +R+       E   H +    
Sbjct: 229 IRMGQYEFPNPEWSEVSEE------VKMLIRNLLKTEPTQRM----TITEFMNHPWIM-- 276

Query: 468 NWALIRSIKPPEVP 481
                +S K P+ P
Sbjct: 277 -----QSTKVPQTP 285

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 4e-22
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 22/185 (11%)

Query: 81  VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK 140
           V  +   + R LG G  G VY    +  +   P+   A+K V+  A    ++      E 
Sbjct: 17  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEA 74

Query: 141 VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
            ++   +   +  L         + ++ME    GDL                       L
Sbjct: 75  SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL--------------------KSYL 114

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                                   A E    + YL+    V+RDL   N +V ED  + +
Sbjct: 115 RSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKI 174

Query: 261 SDFDL 265
            DF +
Sbjct: 175 GDFGM 179

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 3e-12
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
           +    +    +++PE +      +  D W+ GV L+E+      P++G +NE+ L  +++
Sbjct: 191 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 250

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR--IGSLKGSVEIKRHEFFKGIN 468
             L                  L +L+      NPK R     +  S++ +    F+ ++
Sbjct: 251 GGLLDKPDNCPD--------MLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVS 301

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.2 bits (233), Expect = 5e-22
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 19/190 (10%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIR--NPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV 141
           D   L + LG G  G V L +    +          A+K++  +A    K L     E  
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEME 70

Query: 142 ILTML-DHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLL 200
           ++ M+  H  +  L           +++EY   G+L    Q +       S         
Sbjct: 71  MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 130

Query: 201 FFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIML 260
                +                  A +    +EYL     ++RDL   NVLV ED  + +
Sbjct: 131 QLSSKD--------------LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKI 176

Query: 261 SDFDLSFKCD 270
           +DF L+    
Sbjct: 177 ADFGLARDIH 186

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
           ++ +     +++APE +  + +    D W+ GV L+E+   G +P+ G   E+ L  +LK
Sbjct: 193 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-LFKLLK 251

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           +     +    ++       +L  ++       P +R 
Sbjct: 252 EGHRMDKPSNCTN-------ELYMMMRDCWHAVPSQRP 282

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 9e-22
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 35/177 (19%)

Query: 90  RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP 149
           + LGSG+ G V     +   V       A+K++  EA            E  ++  LD+P
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKT---VAVKILKNEAND-PALKDELLAEANVMQQLDNP 68

Query: 150 FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLG 209
           ++  +    EA  +  LVME    G L    Q+   +     +                 
Sbjct: 69  YIVRMIGICEAESW-MLVMEMAELGPLNKYLQQN--RHVKDKNI---------------- 109

Query: 210 FVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLS 266
                            +  + ++YL     V+RDL   NVL+    +  +SDF LS
Sbjct: 110 ------------IELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLS 154

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILKK 412
                   ++ APE I+     S  D W+ GV ++E   YG  P++G    +    + K 
Sbjct: 167 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG 226

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW 469
                  G           ++ DL++     + + R           R+ ++  +N 
Sbjct: 227 ERMGCPAGCPR--------EMYDLMNLCWTYDVENRP-GFAAVELRLRNYYYDVVNE 274

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 34/183 (18%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           +   L R +G G  G+V+     +P    P    A+K              +   E + +
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSP--ENPALAVAIKTCKNC--TSDSVREKFLQEALTM 62

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              DHP +  L      +    ++ME C  G+L +  Q +      ++S           
Sbjct: 63  RQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKY-SLDLASL---------- 110

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                               YA +   AL YL     V+RD+   NVLV  +  + L DF
Sbjct: 111 ------------------ILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDF 152

Query: 264 DLS 266
            LS
Sbjct: 153 GLS 155

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 4e-12
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
           ++       +++APE I+ +   SA D W  GV ++E+L +G  PF+G  N   +  I  
Sbjct: 165 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIEN 224

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                       +        L  L++K    +P +R 
Sbjct: 225 GERLPMPPNCPPT--------LYSLMTKCWAYDPSRRP 254

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 4e-21
 Identities = 65/392 (16%), Positives = 106/392 (27%), Gaps = 100/392 (25%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           +  +  L ++G G  G V+  + R           A+K V  E          A  E  I
Sbjct: 9   VSKYEKLAKIGQGTFGEVFKARHRKT-----GQKVALKKVLMENE-KEGFPITALREIKI 62

Query: 143 LTMLDHPFLPTLY--------AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAK 194
           L +L H  +  L                   LV ++C                       
Sbjct: 63  LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD-------------------- 102

Query: 195 FVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE 254
               L        + F  +++      +      L  L Y+H   I++RD+K  NVL+  
Sbjct: 103 ----LAGLLSNVLVKFTLSEI------KRVMQMLLNGLYYIHRNKILHRDMKAANVLITR 152

Query: 255 DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATP-MQPVLSCFSSVSHG 313
           DG + L+DF L+            +    A             T   +P         +G
Sbjct: 153 DGVLKLADFGLA------------RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYG 200

Query: 314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG 373
                              D      +        PI        G  E     +IS   
Sbjct: 201 PP----------------IDLWGAGCIMAEMWTRSPI------MQGNTEQHQLALIS--- 235

Query: 374 HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKL 433
                           +     P          + ++K      +  + +       + L
Sbjct: 236 -----------QLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDL 284

Query: 434 QDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK 465
              I KLLV +P +RI     S +   H+FF 
Sbjct: 285 ---IDKLLVLDPAQRI----DSDDALNHDFFW 309

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-21
 Identities = 66/406 (16%), Positives = 118/406 (29%), Gaps = 104/406 (25%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
           + ++ L  +GSG  G+V                 A+K + R   +I     R   E  +L
Sbjct: 18  ERYQNLSPVGSGAYGSVCAAFDTK-----TGLRVAVKKLSRPFQSIIHA-KRTYRELRLL 71

Query: 144 TMLDHPFLPTLYAEFEASHY-----SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
             + H  +  L   F  +          ++ +  G DL    + Q      +        
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHV-------- 123

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHI 258
                                  +F   + L  L+Y+H   I++RDLKP N+ V ED  +
Sbjct: 124 -----------------------QFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCEL 160

Query: 259 MLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK 318
            + DF L+   D           + A E        +    +  V    + +  G+    
Sbjct: 161 KILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL-- 218

Query: 319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAV 378
                                                 F GT      ++I         
Sbjct: 219 --------------------------------------FPGTDHIDQLKLI--------- 231

Query: 379 DWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLIS 438
               +G    E+L   +     N  ++L  + K       IG +            DL+ 
Sbjct: 232 -LRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL--------AVDLLE 282

Query: 439 KLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNND 484
           K+LV +  KRI +     +   H +F   +      +  P   + +
Sbjct: 283 KMLVLDSDKRITAA----QALAHAYFAQYHDPDDEPVADPYDQSFE 324

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 3e-20
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 20/118 (16%)

Query: 351 NARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINI 409
           +     F GT  Y  PE I   + HG +   W+LG+ LY+M+ G  PF+ +        I
Sbjct: 163 DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EI 216

Query: 410 LKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI 467
           ++  + F +  VSS          Q LI   L   P  R        EI+ H + + +
Sbjct: 217 IRGQVFFRQ-RVSSE--------CQHLIRWCLALRPSDRP----TFEEIQNHPWMQDV 261

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 8e-19
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 40/193 (20%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLH---RADMEK 140
             +++   LGSG  G+VY     +          A+K V+++ ++   +L    R  ME 
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSD-----NLPVAIKHVEKDRISDWGELPNGTRVPMEV 58

Query: 141 VILTMLD--HPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
           V+L  +      +  L   FE      L++E             + G       A     
Sbjct: 59  VLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG-ALQEELA----- 112

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED-GH 257
                                  R +  + L A+ + H  G+++RD+K EN+L+  + G 
Sbjct: 113 -----------------------RSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGE 149

Query: 258 IMLSDFDLSFKCD 270
           + L DF       
Sbjct: 150 LKLIDFGSGALLK 162

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 87.6 bits (216), Expect = 7e-20
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 37/188 (19%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           ++ +  L ++G G  G VY  Q            +A+K +  E             E  I
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET------FALKKIRLEKED-EGIPSTTIREISI 53

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  L H  +  LY          LV E+                            L   
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ------------------------DLKKL 89

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
                 G            + +  + L  + Y H   +++RDLKP+N+L+  +G + ++D
Sbjct: 90  LDVCEGGLESVTA------KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIAD 143

Query: 263 FDLSFKCD 270
           F L+    
Sbjct: 144 FGLARAFG 151

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 74.9 bits (183), Expect = 2e-15
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 353 RSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILK 411
           +    + T  Y AP+V+ G   + + +D W++G    EM+ GT  F G +    L+ I +
Sbjct: 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

Query: 412 KPLTFPRIGVSSSKEFEEVVK--------------------LQDLISKLLVKNPKKRIGS 451
              T       +  E  +                         DL+SK+L  +P +RI +
Sbjct: 216 ILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITA 275

Query: 452 LKGSVEIKRHEFFK 465
                +   H +FK
Sbjct: 276 K----QALEHAYFK 285

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 8e-20
 Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 37/185 (20%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKK--LHRADMEKVILTM 145
            L  LG G    VY  + +N          A+K +     +  K      A  E  +L  
Sbjct: 2   KLDFLGEGQFATVYKARDKNT-----NQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE 56

Query: 146 LDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFY 205
           L HP +  L   F       LV ++                            L      
Sbjct: 57  LSHPNIIGLLDAFGHKSNISLVFDFMET------------------------DLEVIIKD 92

Query: 206 NNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDL 265
           N+L    + +      + Y   TL  LEYLH   I++RDLKP N+L+ E+G + L+DF L
Sbjct: 93  NSLVLTPSHI------KAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL 146

Query: 266 SFKCD 270
           +    
Sbjct: 147 AKSFG 151

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 24/129 (18%)

Query: 357 FVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLT 415
            V T  Y APE++ G + +G  VD W +G  L E+L       G+++   L  I +   T
Sbjct: 160 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGT 219

Query: 416 FPRIGVSSSKEFEEVVKLQ-------------------DLISKLLVKNPKKRIGSLKGSV 456
                        + V  +                   DLI  L + NP  RI +     
Sbjct: 220 PTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITAT---- 275

Query: 457 EIKRHEFFK 465
           +  + ++F 
Sbjct: 276 QALKMKYFS 284

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 3e-19
 Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 22/133 (16%)

Query: 355 KSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            S V T  Y APEV+    + + VD W++G    EM      F+G ++   L  IL    
Sbjct: 173 TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG 232

Query: 415 TFPRIGVSSSKEFEEVV------------------KLQDLISKLLVKNPKKRIGSLKGSV 456
                                                +DL+ K L  NP KRI     + 
Sbjct: 233 LPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAY 288

Query: 457 EIKRHEFFKGINW 469
               H +F+ +  
Sbjct: 289 SALSHPYFQDLER 301

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 1e-18
 Identities = 37/195 (18%), Positives = 60/195 (30%), Gaps = 42/195 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             +  +  +G G  G V+  +           F A+K V  +             E  +L
Sbjct: 7   QQYECVAEIGEGAYGKVFKARDLKN----GGRFVALKRVRVQ-TGEEGMPLSTIREVAVL 61

Query: 144 TML---DHPFLPTLYAEFEASH-----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKF 195
             L   +HP +  L+     S         LV E+          +              
Sbjct: 62  RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVP------- 114

Query: 196 VFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRED 255
                                     +    + L  L++LH   +V+RDLKP+N+LV   
Sbjct: 115 ----------------------TETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSS 152

Query: 256 GHIMLSDFDLSFKCD 270
           G I L+DF L+    
Sbjct: 153 GQIKLADFGLARIYS 167

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.7 bits (211), Expect = 4e-19
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 45/195 (23%)

Query: 80  RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADME 139
           RVG + +RL R++GSG  G++YL               A+K+       ++ K  +  +E
Sbjct: 4   RVG-NRYRLGRKIGSGSFGDIYLGTDIAA-----GEEVAIKL-----ECVKTKHPQLHIE 52

Query: 140 KVILTMLDHP-FLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
             I  M+     +PT+        Y+ +VME                ++F + +      
Sbjct: 53  SKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLED--LFNFCSRKFSLKTV----- 105

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH- 257
                                     A + +  +EY+H    ++RD+KP+N L+      
Sbjct: 106 -----------------------LLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKG 142

Query: 258 --IMLSDFDLSFKCD 270
             + + DF L+ K  
Sbjct: 143 NLVYIIDFGLAKKYR 157

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.1 bits (181), Expect = 3e-15
 Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 3/138 (2%)

Query: 333 DHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY 392
           D    +   D           +K+  GT  Y +     G       D  +LG  L     
Sbjct: 149 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL 208

Query: 393 GTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL 452
           G+ P++G           +         +    +     +    ++         +    
Sbjct: 209 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCK-GYPSEFATYLNFCRSLRFDDKP-DY 266

Query: 453 KGSVEIKRHEFFK-GINW 469
               ++ R+ F + G ++
Sbjct: 267 SYLRQLFRNLFHRQGFSY 284

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 6e-19
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 35/189 (18%)

Query: 83  LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVI 142
           +++F+ + ++G G  G VY  + +     L     A+K +  +          A  E  +
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNK-----LTGEVVALKKIRLDTET-EGVPSTAIREISL 54

Query: 143 LTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
           L  L+HP +  L       +   LV E+                            L  F
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQD------------------------LKKF 90

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSD 262
              + L  +   +      + Y  + L  L + H   +++RDLKP+N+L+  +G I L+D
Sbjct: 91  MDASALTGIPLPLI-----KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLAD 145

Query: 263 FDLSFKCDV 271
           F L+    V
Sbjct: 146 FGLARAFGV 154

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 5e-18
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 356 SFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
             V T  Y APE++ G  +  +AVD W+LG    EM+     F G++    L  I +   
Sbjct: 161 HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLG 220

Query: 415 TFPRIGVSSSKEFEEVVK--------------------LQDLISKLLVKNPKKRIGSLKG 454
           T   +         +                        + L+S++L  +P KRI +   
Sbjct: 221 TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAK-- 278

Query: 455 SVEIKRHEFFKGIN 468
                 H FF+ + 
Sbjct: 279 --AALAHPFFQDVT 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 7e-19
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 48/200 (24%)

Query: 79  GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM 138
            R     +   + +G+G  G VY  ++ +          A+K        + +     + 
Sbjct: 15  DRPQEVSYTDTKVIGNGSFGVVYQAKLCDS-----GELVAIKK-------VLQDKRFKNR 62

Query: 139 EKVILTMLDHPFLPTLYAEFEASH------YSCLVMEYCPGGDLYAARQR-QPGKRFGIS 191
           E  I+  LDH  +  L   F +S       Y  LV++Y P      AR   +  +   + 
Sbjct: 63  ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI 122

Query: 192 SAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVL 251
                                         + Y  +   +L Y+H  GI +RD+KP+N+L
Sbjct: 123 YV----------------------------KLYMYQLFRSLAYIHSFGICHRDIKPQNLL 154

Query: 252 VREDGHIM-LSDFDLSFKCD 270
           +  D  ++ L DF  + +  
Sbjct: 155 LDPDTAVLKLCDFGSAKQLV 174

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 47/205 (22%), Positives = 74/205 (36%), Gaps = 32/205 (15%)

Query: 329 QVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFL 387
            +D D    +L D            + S++ +  Y APE+I G   + S++D W+ G  L
Sbjct: 154 LLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVL 213

Query: 388 YEMLYGTTPFKGENNEKTLINILKKPLT-----------------FPRIGVSSSKEFEEV 430
            E+L G   F G++    L+ I+K   T                 FP+I      +    
Sbjct: 214 AELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRP 273

Query: 431 V---KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNNDLYC 487
               +   L S+LL   P  R+  L    E   H FF  +      ++K P   +     
Sbjct: 274 RTPPEAIALCSRLLEYTPTARLTPL----EACAHSFFDELRD---PNVKLPNGRDTPALF 326

Query: 488 KIKKKVYVPKLSKQERDAPYQIPTH 512
               +    +LS     A   IP H
Sbjct: 327 NFTTQ----ELSSNPPLATILIPPH 347

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 1e-18
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 33/187 (17%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             F+ ++ LGSG  G VY   +  P     +   A+K +        K       E  ++
Sbjct: 9   TEFKKIKVLGSGAFGTVYKG-LWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVM 65

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
             +D+P +  L      S    L+ +  P G L         +      ++++       
Sbjct: 66  ASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLL----DYVREHKDNIGSQYL------- 113

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                               +  +    + YL    +V+RDL   NVLV+   H+ ++DF
Sbjct: 114 ------------------LNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDF 155

Query: 264 DLSFKCD 270
            L+    
Sbjct: 156 GLAKLLG 162

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 7e-12
 Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEML-YGTTPFKGENNEKTLINILK 411
            ++      +++A E I  + +    D W+ GV ++E++ +G+ P+ G    + + +IL+
Sbjct: 169 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-ISSILE 227

Query: 412 KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
           K    P+  + +         +  ++ K  + +   R 
Sbjct: 228 KGERLPQPPICTI-------DVYMIMVKCWMIDADSRP 258

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 38/189 (20%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM 145
             L   +G G  G V+  + R   V       A+K+         ++    + E     M
Sbjct: 5   IVLQESIGKGRFGEVWRGKWRGEEV-------AVKIFSSRE----ERSWFREAEIYQTVM 53

Query: 146 LDHPFLPTLYAEFEASHYS----CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLF 201
           L H  +    A     + +     LV +Y   G L+    R           K       
Sbjct: 54  LRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTAS 111

Query: 202 FFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLS 261
              +     +H +                 +       I +RDLK +N+LV+++G   ++
Sbjct: 112 GLAH-----LHME----------------IVGTQGKPAIAHRDLKSKNILVKKNGTCCIA 150

Query: 262 DFDLSFKCD 270
           D  L+ + D
Sbjct: 151 DLGLAVRHD 159

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 21/122 (17%)

Query: 348 EPINARSKSFVGTHEYLAPEVISGQGH------GSAVDWWTLGVFLYEMLYGTTPFK--- 398
           + I+      VGT  Y+APEV+    +          D + +G+  +E+    +      
Sbjct: 163 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHE 222

Query: 399 -----------GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKK 447
                       + + + +  ++ +    P I  +  +  E +  +  ++ +    N   
Sbjct: 223 DYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP-NRWQSCEALRVMAKIMRECWYANGAA 281

Query: 448 RI 449
           R+
Sbjct: 282 RL 283

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 5e-18
 Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 42/191 (21%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             +  L  +G G  G V             +   A+K +       +    R   E  IL
Sbjct: 8   PRYTNLSYIGEGAYGMVCSAYDNV-----NKVRVAIKKISPFEH--QTYCQRTLREIKIL 60

Query: 144 TMLDHPFLPTLYAEFEASHYS----CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFL 199
               H  +  +     A          ++ +  G DLY   + Q      I         
Sbjct: 61  LRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHI--------- 111

Query: 200 LFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIM 259
                                  ++  + L  L+Y+H   +++RDLKP N+L+     + 
Sbjct: 112 ----------------------CYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLK 149

Query: 260 LSDFDLSFKCD 270
           + DF L+   D
Sbjct: 150 ICDFGLARVAD 160

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 27/133 (20%)

Query: 356 SFVGTHEYLAPEVI-SGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPL 414
            +V T  Y APE++ + +G+  ++D W++G  L EML     F G++    L +IL    
Sbjct: 171 EYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILG 230

Query: 415 TFPRIGVSSSKEFEEVV----------------------KLQDLISKLLVKNPKKRIGSL 452
           +  +  ++     +                         K  DL+ K+L  NP KRI   
Sbjct: 231 SPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRI--- 287

Query: 453 KGSVEIKRHEFFK 465
               +   H + +
Sbjct: 288 -EVEQALAHPYLE 299

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 3e-17
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 44/193 (22%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
             +R L+ +GSG  G V                 A+K + R   +      RA  E  +L
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRT-----GAKVAIKKLYRPFQS-ELFAKRAYRELRLL 71

Query: 144 TMLDHPFLPTLYAEFEASHYS------CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVF 197
             + H  +  L   F             LVM +         +     ++ G        
Sbjct: 72  KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH----EKLGEDRI---- 123

Query: 198 FLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGH 257
                                   +F   + L  L Y+H  GI++RDLKP N+ V ED  
Sbjct: 124 ------------------------QFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCE 159

Query: 258 IMLSDFDLSFKCD 270
           + + DF L+ + D
Sbjct: 160 LKILDFGLARQAD 172

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 8e-17
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 27/162 (16%)

Query: 346 VAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK 404
           +A   ++    +V T  Y APEVI     +   VD W++G  + EM+ G T FKG ++  
Sbjct: 167 LARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD 226

Query: 405 TLINILKKPLTFP-----------------RIGVSSSKEFEEVVK-----LQDLISKLLV 442
            L  I+K   T P                  +     K+F  ++        +L+ K+LV
Sbjct: 227 QLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLV 286

Query: 443 KNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPNND 484
            + ++R+ +     E   H +F+ ++             + D
Sbjct: 287 LDAEQRVTAG----EALAHPYFESLHDTEDEPQVQKYDDSFD 324

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 5e-17
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 32/183 (17%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
                 + +G+G+ G VY   ++    G  +   A+K +        K+      E  I+
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTS-SGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIM 63

Query: 144 TMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
               H  +  L           ++ EY   G       R+    F +             
Sbjct: 64  GQFSHHNIIRLEGVISKYKPMMIITEYMENGA-LDKFLREKDGEFSVLQL---------- 112

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
                                       ++YL  M  V+RDL   N+LV  +    +SDF
Sbjct: 113 ------------------VGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDF 154

Query: 264 DLS 266
            LS
Sbjct: 155 GLS 157

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 5e-13
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 354 SKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKP 413
           +        + APE IS +   SA D W+ G+ ++E++        E +   ++  +   
Sbjct: 170 TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDG 229

Query: 414 LTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
              P          +    +  L+ +   +   +R 
Sbjct: 230 FRLPT-------PMDCPSAIYQLMMQCWQQERARRP 258

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 79.1 bits (194), Expect = 7e-17
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 46/193 (23%)

Query: 84  DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVIL 143
            H+++ RR+G G  G ++                A+K   R     R    +   E    
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLL-----NNQQVAIKFEPR-----RSDAPQLRDEYRTY 54

Query: 144 TMLDH-PFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFF 202
            +L     +P +Y   +   ++ LV++    G          G++F + +          
Sbjct: 55  KLLAGCTGIPNVYYFGQEGLHNVLVIDLL--GPSLEDLLDLCGRKFSVKTV--------- 103

Query: 203 FFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVRE-----DGH 257
                                 A + L  ++ +H   +VYRD+KP+N L+          
Sbjct: 104 -------------------AMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANM 144

Query: 258 IMLSDFDLSFKCD 270
           I + DF +     
Sbjct: 145 IYVVDFGMVKFYR 157

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 70.6 bits (172), Expect = 4e-14
 Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 11/115 (9%)

Query: 339 LLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK 398
              DP           K+  GT  Y++     G+      D   LG      L G+ P++
Sbjct: 155 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ 214

Query: 399 GENNEKTL-----INILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKR 448
           G            I   K+      +     +EF         +           
Sbjct: 215 GLKAATNKQKYERIGEKKQSTPLRELCAGFPEEF------YKYMHYARNLAFDAT 263

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 36/183 (19%)

Query: 85  HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT 144
           HF     +G G  G VY   + +      +   A+K ++R       ++ +   E +I+ 
Sbjct: 30  HFN--EVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITD--IGEVSQFLTEGIIMK 83

Query: 145 MLDHPFLPTLY-AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFF 203
              HP + +L      +     +V+ Y   GDL                           
Sbjct: 84  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR-------------------------- 117

Query: 204 FYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDF 263
              N     T      +   +  +    +++L     V+RDL   N ++ E   + ++DF
Sbjct: 118 ---NFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADF 174

Query: 264 DLS 266
            L+
Sbjct: 175 GLA 177

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 353 RSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKK 412
                    +++A E +  Q   +  D W+ GV L+E++    P   + N   +   L +
Sbjct: 190 NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 249

Query: 413 PLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRI 449
                +              L +++ K      + R 
Sbjct: 250 GRRLLQPEYCPD-------PLYEVMLKCWHPKAEMRP 279

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 56/411 (13%), Positives = 115/411 (27%), Gaps = 92/411 (22%)

Query: 86  FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEK----- 140
           + L+R+LG G    V+L +             AMK+V  + +          + +     
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVN-----NTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDA 69

Query: 141 --VILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFF 198
                  +    +  L   F     + + +                          +V  
Sbjct: 70  DNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYV-- 127

Query: 199 LLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MGIVYRDLKPENVLVREDG- 256
                                  +  + + LL L+Y+H   GI++ D+KPENVL+     
Sbjct: 128 -----------------------KQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDS 164

Query: 257 -----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS 311
                 I ++D   +   D           + + E     +   C   +         + 
Sbjct: 165 PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPE-VLLGAPWGCGADIWSTACLIFELI 223

Query: 312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG 371
            G         +    E       D  +    E++ E                 P  +  
Sbjct: 224 TGD-------FLFEPDEGHSYTKDDDHIAQIIELLGEL----------------PSYLLR 260

Query: 372 QGHGSAVDWWTLGVFLYEMLYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVV 431
            G  +   + + G+          P +         ++L +   F +     +KE     
Sbjct: 261 NGKYTRTFFNSRGLLRNISKLKFWPLE---------DVLTEKYKFSK---DEAKEI---- 304

Query: 432 KLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN 482
              D +S +L  +P+KR  +      +  H + K  +   +  I+ P+   
Sbjct: 305 --SDFLSPMLQLDPRKRADAG----GLVNHPWLK--DTLGMEEIRVPDREL 347

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 63/194 (32%)

Query: 88  LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKV------ 141
           + + +G G    V+ C               +K       + +K   + D   +      
Sbjct: 4   IGKLMGEGKESAVFNCYSEK------FGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLA 57

Query: 142 ---------ILTMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISS 192
                     L  L    +P +YA       + ++ME                       
Sbjct: 58  IRSARNEFRALQKLQGLAVPKVYAWEG----NAVLMELIDAK------------------ 95

Query: 193 AKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPENVLV 252
                                      N        L  +   +  GIV+ DL   NVLV
Sbjct: 96  -------------------ELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLV 136

Query: 253 REDGHIMLSDFDLS 266
             +  I + DF  S
Sbjct: 137 -SEEGIWIIDFPQS 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.94
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.54
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.16
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.01
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.36
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.01
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.0

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-66  Score=500.47  Aligned_cols=281  Identities=33%  Similarity=0.595  Sum_probs=238.9

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ...++|++++.||+|+||+||+|+++.     +++.||||++.+...........+.+|+.+|++++|||||+++++|.+
T Consensus         5 ~~p~dy~i~~~lG~G~fg~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~   79 (288)
T d1uu3a_           5 KRPEDFKFGKILGEGSFSTVVLARELA-----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD   79 (288)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC
T ss_pred             CCCCCCEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE
Confidence            345789999999999999999999987     678999999988766655667788899999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ++.+|||||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||++||
T Consensus        80 ~~~~~ivmEy~~gg~L~~~~~~~--~~l~e~~~----------------------------~~~~~qi~~al~ylH~~~i  129 (288)
T d1uu3a_          80 DEKLYFGLSYAKNGELLKYIRKI--GSFDETCT----------------------------RFYTAEIVSALEYLHGKGI  129 (288)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEEccCCCCHHHhhhcc--CCCCHHHH----------------------------HHHHHHHHHHHHhhccccE
Confidence            99999999999999999988764  23333333                            4778999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||||+|||++.+|.+||+|||+|+.+.....                                              
T Consensus       130 iHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~----------------------------------------------  163 (288)
T d1uu3a_         130 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESK----------------------------------------------  163 (288)
T ss_dssp             ECSCCSGGGEEECTTSCEEECCCTTCEECC--------------------------------------------------
T ss_pred             EcCcCCccccccCCCceEEecccccceecccCCc----------------------------------------------
Confidence            9999999999999999999999999854431100                                              


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                    .....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.
T Consensus       164 ------------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         164 ------------------------------QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             ------------------------------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------------------------ccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence                                          11233467999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC--ChHHhhcCCCcCCCCcccccCCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK--GSVEIKRHEFFKGINWALIRSIKPP  478 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~--~~~ell~hp~f~~~~~~~~~~~~p~  478 (517)
                      +..+.+.++......+|...         +.++++||.+||+.||.+|||+++  ...++++||||++++|+.+....||
T Consensus       214 ~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~~l~~~~pP  284 (288)
T d1uu3a_         214 NEYLIFQKIIKLEYDFPEKF---------FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPP  284 (288)
T ss_dssp             SHHHHHHHHHTTCCCCCTTC---------CHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCC
T ss_pred             CHHHHHHHHHcCCCCCCccC---------CHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHHHhhcCCCC
Confidence            99999999998877766422         225899999999999999999973  2234799999999999999999999


Q ss_pred             CCC
Q 010140          479 EVP  481 (517)
Q Consensus       479 ~~~  481 (517)
                      .+|
T Consensus       285 ~l~  287 (288)
T d1uu3a_         285 KLT  287 (288)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            766

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-64  Score=497.45  Aligned_cols=281  Identities=39%  Similarity=0.711  Sum_probs=243.3

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++.+++|++++.||+|+||.||+|+++.     +++.||||++++..........++.+|+.+|+.++|||||+++++|+
T Consensus         1 ~i~l~dy~~~~~lG~G~fg~V~~~~~~~-----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~   75 (337)
T d1o6la_           1 KVTMNDFDYLKLLGKGTFGKVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ   75 (337)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEE
T ss_pred             CCchHhcEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeec
Confidence            3578899999999999999999999987     78999999999887666666788889999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+.+|+|||||+||+|..++...  ..+++..+                            +.|++||+.||+|||++|
T Consensus        76 ~~~~~~iv~ey~~gg~L~~~~~~~--~~~~e~~~----------------------------~~~~~qil~al~ylH~~~  125 (337)
T d1o6la_          76 THDRLCFVMEYANGGELFFHLSRE--RVFTEERA----------------------------RFYGAEIVSALEYLHSRD  125 (337)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceeccCCCchhhhhhcc--cCCcHHHH----------------------------HHHHHHHhhhhhhhhhcC
Confidence            999999999999999999988764  23333333                            478899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+|||++.+|++||+|||+|+.....                                               
T Consensus       126 iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~-----------------------------------------------  158 (337)
T d1o6la_         126 VVYRDIKLENLMLDKDGHIKITDFGLCKEGISD-----------------------------------------------  158 (337)
T ss_dssp             CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT-----------------------------------------------
T ss_pred             ccccccCHHHeEecCCCCEEEeecccccccccC-----------------------------------------------
Confidence            999999999999999999999999998543210                                               


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .......+||+.|||||++.+..|+.++|||||||++|||++|++||.+
T Consensus       159 -------------------------------~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~  207 (337)
T d1o6la_         159 -------------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  207 (337)
T ss_dssp             -------------------------------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             -------------------------------CcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCC
Confidence                                           1123456899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCcccc--cCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWALI--RSIK  476 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~~--~~~~  476 (517)
                      .+..+++..+......+|...         +.++++||.+||++||.+|++... .++|+++||||++++|+.+  +.+.
T Consensus       208 ~~~~~~~~~i~~~~~~~p~~~---------s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~  278 (337)
T d1o6la_         208 QDHERLFELILMEEIRFPRTL---------SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLL  278 (337)
T ss_dssp             SSHHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSC
T ss_pred             cCHHHHHHHHhcCCCCCCccC---------CHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccCCHHHHHhCCCC
Confidence            999999999998887776532         225899999999999999998543 3679999999999999977  5577


Q ss_pred             CCCCCC
Q 010140          477 PPEVPN  482 (517)
Q Consensus       477 p~~~~~  482 (517)
                      ||..|.
T Consensus       279 ~p~~P~  284 (337)
T d1o6la_         279 PPFKPQ  284 (337)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            887764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-63  Score=489.86  Aligned_cols=277  Identities=37%  Similarity=0.741  Sum_probs=238.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      .+++|++++.||+|+||+||+|+++.     +++.||||++.+.........+++.+|+.+|+.++|||||++++++.++
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   76 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSRH-----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA   76 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS
T ss_pred             chhHeEEEEEEecCcCcEEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeC
Confidence            46789999999999999999999986     6789999999887766556677888999999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||+||+|..++....  .+....                            ++.|+.||+.||+|||++|||
T Consensus        77 ~~~~ivmE~~~gg~l~~~~~~~~--~~~~~~----------------------------~~~~~~qi~~al~~lH~~~ii  126 (316)
T d1fota_          77 QQIFMIMDYIEGGELFSLLRKSQ--RFPNPV----------------------------AKFYAAEVCLALEYLHSKDII  126 (316)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHTS--SCCHHH----------------------------HHHHHHHHHHHHHHHHTTTEE
T ss_pred             CeeeeEeeecCCccccccccccc--cccccH----------------------------HHHHHHHHHHhhhhhccCcEE
Confidence            99999999999999999887652  222222                            246789999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+||||+.+|.+||+|||+|+....                                                  
T Consensus       127 HrDiKp~NILl~~~g~vkL~DFG~a~~~~~--------------------------------------------------  156 (316)
T d1fota_         127 YRDLKPENILLDKNGHIKITDFGFAKYVPD--------------------------------------------------  156 (316)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCSSCEECSS--------------------------------------------------
T ss_pred             ccccCchheeEcCCCCEEEecCccceEecc--------------------------------------------------
Confidence            999999999999999999999999854321                                                  


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                     ...+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+
T Consensus       157 -------------------------------~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~  205 (316)
T d1fota_         157 -------------------------------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN  205 (316)
T ss_dssp             -------------------------------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             -------------------------------ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC
Confidence                                           1234579999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc--cCCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI--RSIKPP  478 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~--~~~~p~  478 (517)
                      ..+.+.++......+|...         +.++++||.+||+.||.+|++.. ..++++|+||||++++|+.+  +.+.||
T Consensus       206 ~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l~~~~~~~p  276 (316)
T d1fota_         206 TMKTYEKILNAELRFPPFF---------NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETP  276 (316)
T ss_dssp             HHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCS
T ss_pred             HHHHHHHHHcCCCCCCCCC---------CHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHHHHHhCCCCcC
Confidence            9999999998877665432         12489999999999999998433 24559999999999999977  567888


Q ss_pred             CCCCC
Q 010140          479 EVPNN  483 (517)
Q Consensus       479 ~~~~~  483 (517)
                      ..|+.
T Consensus       277 ~~p~~  281 (316)
T d1fota_         277 YEPPI  281 (316)
T ss_dssp             CCCCC
T ss_pred             CCCCc
Confidence            77653

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-63  Score=475.25  Aligned_cols=259  Identities=34%  Similarity=0.573  Sum_probs=225.2

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++.+++|++++.||+|+||+||+|+++.     +++.||||++.+...........+.+|+.+|+.++|||||++++++.
T Consensus         2 ~~~l~dy~i~~~iG~G~fg~Vy~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~   76 (263)
T d2j4za1           2 QWALEDFEIGRPLGKGKFGNVYLAREKQ-----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH   76 (263)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             CcchhHeEEEEEEecCCCcEEEEEEECC-----CCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence            3457899999999999999999999987     67899999998876665556677888999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +++.+|+|||||+||+|.+++...  ..+++..+                            +.|+.||+.||+|||++|
T Consensus        77 ~~~~~~ivmEy~~~g~L~~~l~~~--~~l~e~~~----------------------------~~i~~qi~~al~~lH~~~  126 (263)
T d2j4za1          77 DATRVYLILEYAPLGTVYRELQKL--SKFDEQRT----------------------------ATYITELANALSYCHSKR  126 (263)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             ECCEEEEEEeecCCCcHHHHHhhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCC
Confidence            999999999999999999998764  23333333                            478899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+|||++.+|.+||+|||+|+....                                                
T Consensus       127 ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~------------------------------------------------  158 (263)
T d2j4za1         127 VIHRDIKPENLLLGSAGELKIADFGWSVHAPS------------------------------------------------  158 (263)
T ss_dssp             CCCCCCCGGGEEECTTSCEEECCCCSCSCCCC------------------------------------------------
T ss_pred             eeeeeeccccceecCCCCEeecccceeeecCC------------------------------------------------
Confidence            99999999999999999999999999843221                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                      ......+||+.|||||++.+..|+.++|||||||++|||++|+.||.+
T Consensus       159 --------------------------------~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  206 (263)
T d2j4za1         159 --------------------------------SRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA  206 (263)
T ss_dssp             --------------------------------CCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             --------------------------------CcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCC
Confidence                                            112345799999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+..+.+..+......+|...         +.++++||.+||+.||++|||+.    |+|+||||++
T Consensus       207 ~~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dp~~R~t~~----eil~hp~~~~  260 (263)
T d2j4za1         207 NTYQETYKRISRVEFTFPDFV---------TEGARDLISRLLKHNPSQRPMLR----EVLEHPWITA  260 (263)
T ss_dssp             SSHHHHHHHHHTTCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHH----HHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCccC---------CHHHHHHHHHHccCCHhHCcCHH----HHHcCcCcCC
Confidence            999999999988877766432         22589999999999999999997    9999999963

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-62  Score=488.52  Aligned_cols=277  Identities=36%  Similarity=0.675  Sum_probs=237.6

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ..+++|++++.||+|+||+||+|+++.     +++.||||++.+.........+++.+|+.+|+.++|||||+++++|.+
T Consensus        38 ~~ld~y~i~~~lG~G~fg~Vy~a~~~~-----~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~  112 (350)
T d1rdqe_          38 AQLDQFDRIKTLGTGSFGRVMLVKHKE-----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD  112 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             CCccCeEEEEEeecCcCcEEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc
Confidence            446899999999999999999999986     678999999988766655667788899999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      ...+|+||||+.||+|..++....  .+++..                            ++.|+.||+.||.|||++||
T Consensus       113 ~~~~~~v~e~~~~g~l~~~l~~~~--~l~e~~----------------------------~~~i~~qi~~aL~yLH~~~i  162 (350)
T d1rdqe_         113 NSNLYMVMEYVAGGEMFSHLRRIG--RFSEPH----------------------------ARFYAAQIVLTFEYLHSLDL  162 (350)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHC--CCCHHH----------------------------HHHHHHHHHHHHHHHHHTTE
T ss_pred             ccccccccccccccchhhhHhhcC--CCCHHH----------------------------HHHHHHHHHHHHHHHHhCCE
Confidence            999999999999999999887652  333333                            34788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||||+||||+.+|++||+|||+|+.+..                                                 
T Consensus       163 iHRDIKP~NILl~~~g~ikL~DFG~a~~~~~-------------------------------------------------  193 (350)
T d1rdqe_         163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVKG-------------------------------------------------  193 (350)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECSS-------------------------------------------------
T ss_pred             ecCcCCHHHcccCCCCCEEeeeceeeeeccc-------------------------------------------------
Confidence            9999999999999999999999999854321                                                 


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                      ...+.+||+.|||||++.+..|+.++|||||||++|||++|..||.+.
T Consensus       194 --------------------------------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         194 --------------------------------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             --------------------------------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --------------------------------ccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence                                            122457999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccC-CCCChHHhhcCCCcCCCCcccc--cCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIG-SLKGSVEIKRHEFFKGINWALI--RSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t-~~~~~~ell~hp~f~~~~~~~~--~~~~p  477 (517)
                      +....+.++......+|...         +.++.+||.+||+.||.+|+. +...++||++||||++++|..+  +.+.|
T Consensus       242 ~~~~~~~~i~~~~~~~p~~~---------s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~  312 (350)
T d1rdqe_         242 QPIQIYEKIVSGKVRFPSHF---------SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA  312 (350)
T ss_dssp             SHHHHHHHHHHCCCCCCTTC---------CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CHHHHHHHHhcCCCCCCccC---------CHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCc
Confidence            99999999988876665421         225899999999999999962 2234459999999999999977  45678


Q ss_pred             CCCCC
Q 010140          478 PEVPN  482 (517)
Q Consensus       478 ~~~~~  482 (517)
                      |++|.
T Consensus       313 p~~p~  317 (350)
T d1rdqe_         313 PFIPK  317 (350)
T ss_dssp             SCCCC
T ss_pred             CccCC
Confidence            87775

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-61  Score=475.50  Aligned_cols=275  Identities=37%  Similarity=0.755  Sum_probs=229.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHH-hcCCCCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILT-MLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~-~l~HpnIv~l~~~~~~~  161 (517)
                      +++|++++.||+|+||+||+|+++.     +++.||||++.+.........+.+..|..++. .++|||||++++++.++
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~-----t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~   75 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKK-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK   75 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECC-----CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccC
Confidence            4789999999999999999999987     78999999998876555555666677777765 68999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|||||||+||+|.+++...  ..+++.+                            ++.|+.||+.||+|||++|||
T Consensus        76 ~~~yivmEy~~~g~L~~~i~~~--~~~~e~~----------------------------~~~~~~qi~~al~ylH~~~ii  125 (320)
T d1xjda_          76 ENLFFVMEYLNGGDLMYHIQSC--HKFDLSR----------------------------ATFYAAEIILGLQFLHSKGIV  125 (320)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCB
T ss_pred             CceeEEEeecCCCcHHHHhhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCee
Confidence            9999999999999999998764  2333333                            247889999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.+|++||+|||+++.....                                                 
T Consensus       126 HrDikp~NiL~~~~~~~kl~DFG~a~~~~~~-------------------------------------------------  156 (320)
T d1xjda_         126 YRDLKLDNILLDKDGHIKIADFGMCKENMLG-------------------------------------------------  156 (320)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCTTCBCCCCT-------------------------------------------------
T ss_pred             eccCcccceeecCCCceeccccchhhhcccc-------------------------------------------------
Confidence            9999999999999999999999998543210                                                 


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                   .......+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+
T Consensus       157 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~  207 (320)
T d1xjda_         157 -----------------------------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD  207 (320)
T ss_dssp             -----------------------------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -----------------------------cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC
Confidence                                         111234579999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc--cCCCCCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI--RSIKPPE  479 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~--~~~~p~~  479 (517)
                      ..+++.++..+.+.+|...         +.++.+||.+||+.||++||++.   .|+++||||++++|+.+  +.+.||+
T Consensus       208 ~~~~~~~i~~~~~~~p~~~---------s~~~~dli~~~L~~dP~~R~s~~---~~l~~hpff~~~~~~~l~~~~~~pp~  275 (320)
T d1xjda_         208 EEELFHSIRMDNPFYPRWL---------EKEAKDLLVKLFVREPEKRLGVR---GDIRQHPLFREINWEELERKEIDPPF  275 (320)
T ss_dssp             HHHHHHHHHHCCCCCCTTS---------CHHHHHHHHHHSCSSGGGSBTTB---SCGGGSGGGTTCCHHHHHTTCSCC--
T ss_pred             HHHHHHHHHcCCCCCCccC---------CHHHHHHHHHhcccCCCCCcCHH---HHHHhCchhccCCHHHHHhcCCCCCC
Confidence            9999999988877665422         22589999999999999999984   17999999999999976  5567777


Q ss_pred             CCC
Q 010140          480 VPN  482 (517)
Q Consensus       480 ~~~  482 (517)
                      .|.
T Consensus       276 ~p~  278 (320)
T d1xjda_         276 RPK  278 (320)
T ss_dssp             ---
T ss_pred             CCC
Confidence            765

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-62  Score=469.23  Aligned_cols=261  Identities=27%  Similarity=0.433  Sum_probs=207.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||+||+|+++.     +++.||||++......  ...+++.+|+.+|++++|||||++++++.+++
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~-----~~~~vAiK~i~~~~~~--~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~   76 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRV-----TEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGN   76 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETT
T ss_pred             CcceEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEEehhhcc--hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc
Confidence            5789999999999999999999987     6789999999765332  33456788999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++...  ..+++..+                            +.|++||+.||+|||++||||
T Consensus        77 ~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~----------------------------~~i~~qi~~al~ylH~~~IiH  126 (271)
T d1nvra_          77 IQYLFLEYCSGGELFDRIEPD--IGMPEPDA----------------------------QRFFHQLMAGVVYLHGIGITH  126 (271)
T ss_dssp             EEEEEEECCTTEEGGGGSBTT--TBCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             eeEEEEeccCCCcHHHHHhcC--CCCCHHHH----------------------------HHHHHHHHHHHHHHHHcCCcc
Confidence            999999999999999887543  23433333                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.+|.+||+|||+|+.+.....                                                
T Consensus       127 rDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~------------------------------------------------  158 (271)
T d1nvra_         127 RDIKPENLLLDERDNLKISDFGLATVFRYNNR------------------------------------------------  158 (271)
T ss_dssp             SCCCGGGEEECTTCCEEECCCTTCEECEETTE------------------------------------------------
T ss_pred             CcccHHHEEECCCCCEEEccchhheeeccCCc------------------------------------------------
Confidence            99999999999999999999999854321100                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .......+||+.|||||++.+..+ +.++|||||||++|||++|++||.+..
T Consensus       159 ----------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~  210 (271)
T d1nvra_         159 ----------------------------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  210 (271)
T ss_dssp             ----------------------------ECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS
T ss_pred             ----------------------------cccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC
Confidence                                        112345689999999999998876 678999999999999999999998766


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ....................      ..+.++.+||.+||+.||++|||+.    |+|+||||+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~------~~s~~~~~li~~~L~~dP~~R~t~~----eil~hpwf~~  265 (271)
T d1nvra_         211 DSCQEYSDWKEKKTYLNPWK------KIDSAPLALLHKILVENPSARITIP----DIKKDRWYNK  265 (271)
T ss_dssp             TTSHHHHHHHTTCTTSTTGG------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTCTTTTC
T ss_pred             hHHHHHHHHhcCCCCCCccc------cCCHHHHHHHHHHcCCChhHCcCHH----HHhcCHhhCc
Confidence            54333333332222221111      1223589999999999999999997    9999999974

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-61  Score=481.32  Aligned_cols=279  Identities=30%  Similarity=0.603  Sum_probs=223.3

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHH---HHHHHHhcCCCCccceeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADM---EKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~---E~~il~~l~HpnIv~l~~~~  158 (517)
                      .+++|++++.||+|+||.||+|+++.     +++.||||++.+...........+.+   |+.+++.++|||||+++++|
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~-----t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~   76 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF   76 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECC-----CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence            57899999999999999999999987     68899999998766544433333333   46677777899999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+.+.+|||||||+||+|.+++...  ..+++..                            ++.|+.||+.||+|||++
T Consensus        77 ~~~~~~~ivmE~~~gg~L~~~l~~~--~~~~e~~----------------------------~~~~~~qi~~aL~ylH~~  126 (364)
T d1omwa3          77 HTPDKLSFILDLMNGGDLHYHLSQH--GVFSEAD----------------------------MRFYAAEIILGLEHMHNR  126 (364)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH--CSCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             EECCEEEEEEEecCCCcHHHHHHhc--ccccHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999998764  2233222                            347889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+||||+.+|.+||+|||+|+.+..                                               
T Consensus       127 ~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~-----------------------------------------------  159 (364)
T d1omwa3         127 FVVYRDLKPANILLDEHGHVRISDLGLACDFSK-----------------------------------------------  159 (364)
T ss_dssp             TEECCCCSGGGEEECSSSCEEECCCTTCEECSS-----------------------------------------------
T ss_pred             CccceeeccceeEEcCCCcEEEeeeceeeecCC-----------------------------------------------
Confidence            999999999999999999999999999854321                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                       ......+||+.|||||++.+ ..|+.++|||||||++|||++|+.||
T Consensus       160 ---------------------------------~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf  206 (364)
T d1omwa3         160 ---------------------------------KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPF  206 (364)
T ss_dssp             ---------------------------------SCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ---------------------------------CcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCC
Confidence                                             11234579999999999975 56899999999999999999999999


Q ss_pred             CCCChHH---HHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC-CChHHhhcCCCcCCCCcccc-
Q 010140          398 KGENNEK---TLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL-KGSVEIKRHEFFKGINWALI-  472 (517)
Q Consensus       398 ~~~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~-~~~~ell~hp~f~~~~~~~~-  472 (517)
                      .+.....   ....+......+|..   .      +.++++||.+||+.||++|||.. ..++|+++||||++++|..+ 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~---~------s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~  277 (364)
T d1omwa3         207 RQHKTKDKHEIDRMTLTMAVELPDS---F------SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVF  277 (364)
T ss_dssp             CSSCSSCHHHHHHHSSSCCCCCCSS---S------CHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHH
T ss_pred             CCCCHHHHHHHHHhcccCCCCCCCC---C------CHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHHh
Confidence            8765432   223333333333321   1      22589999999999999999953 34579999999999999966 


Q ss_pred             -cCCCCCCCCCCc
Q 010140          473 -RSIKPPEVPNND  484 (517)
Q Consensus       473 -~~~~p~~~~~~~  484 (517)
                       +.+.||++|...
T Consensus       278 ~~~~~~p~~p~~~  290 (364)
T d1omwa3         278 LQKYPPPLIPPRG  290 (364)
T ss_dssp             TTCSCCSCCCCCC
T ss_pred             cCCCCcCcCCCCC
Confidence             567888887643

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-60  Score=465.66  Aligned_cols=257  Identities=24%  Similarity=0.373  Sum_probs=214.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||++.....   ...+.+.+|+.+|+.++|||||+++++|.+++
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~-----~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   90 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVA-----TGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGD   90 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTT-----TCCEEEEEEEEGGGC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             ccccEEEEEEecCcCcEEEEEEECC-----CCCEEEEEEEecccC---hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECC
Confidence            3579999999999999999999886     678999999876532   22356778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++...   .+++..+                            +.|++||+.||+|||++||||
T Consensus        91 ~~~ivmEy~~gg~L~~~~~~~---~l~~~~~----------------------------~~i~~qi~~aL~yLH~~~iiH  139 (293)
T d1yhwa1          91 ELWVVMEYLAGGSLTDVVTET---CMDEGQI----------------------------AAVCRECLQALEFLHSNQVIH  139 (293)
T ss_dssp             EEEEEEECCTTCBHHHHHHHS---CCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEecCCCcHHHHhhcc---CCCHHHH----------------------------HHHHHHHHHHHHHHHHCCCcc
Confidence            999999999999999887653   2333333                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.+|++||+|||+|+.+...                                                  
T Consensus       140 rDiKp~NILl~~~~~vkl~DFG~a~~~~~~--------------------------------------------------  169 (293)
T d1yhwa1         140 RDIKSDNILLGMDGSVKLTDFGFCAQITPE--------------------------------------------------  169 (293)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTCEECCST--------------------------------------------------
T ss_pred             cCCcHHHeEECCCCcEeeccchhheeeccc--------------------------------------------------
Confidence            999999999999999999999998543210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCCCh
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGENN  402 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~~~  402 (517)
                                                  .......+||+.|||||++.+..|+.++|||||||++|+|++|.+||.+.+.
T Consensus       170 ----------------------------~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~  221 (293)
T d1yhwa1         170 ----------------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (293)
T ss_dssp             ----------------------------TCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------cccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH
Confidence                                        1122345799999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          403 EKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       403 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      .+.+..+............      ..+.++++||.+||+.||++|||+.    |+|+||||+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~------~~s~~~~~li~~~L~~dP~~R~s~~----eil~Hp~~~~  275 (293)
T d1yhwa1         222 LRALYLIATNGTPELQNPE------KLSAIFRDFLNRCLDMDVEKRGSAK----ELLQHQFLKI  275 (293)
T ss_dssp             HHHHHHHHHHCSCCCSSGG------GSCHHHHHHHHHHTCSSTTTSCCHH----HHTTCGGGGG
T ss_pred             HHHHHHHHhCCCCCCCCcc------cCCHHHHHHHHHHccCChhHCcCHH----HHhcCHhhCC
Confidence            7777776654322211111      1223589999999999999999997    9999999974

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-60  Score=467.35  Aligned_cols=259  Identities=32%  Similarity=0.483  Sum_probs=206.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .+.|++++.||+|+||+||+|+++.     +++.||||++.+....  .....+.+|+.+|+.++|||||+++++|.+++
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~~~--~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~   80 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKR-----TQKLVAIKCIAKKALE--GKEGSMENEIAVLHKIKHPNIVALDDIYESGG   80 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETT-----TCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEEEEeeccCeEEEEEEECC-----CCCEEEEEEEchHHhh--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            3679999999999999999999886     6789999999866543  22356678999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++...  ..+++.++                            +.|+.||+.||+|||++||||
T Consensus        81 ~~~lvmE~~~gg~L~~~l~~~--~~l~e~~~----------------------------~~~~~qi~~al~ylH~~~iiH  130 (307)
T d1a06a_          81 HLYLIMQLVSGGELFDRIVEK--GFYTERDA----------------------------SRLIFQVLDAVKYLHDLGIVH  130 (307)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--SCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEEeccCCCcHHHhhhcc--cCCCHHHH----------------------------HHHHHHHHHHHHhhhhceeee
Confidence            999999999999999998764  33444333                            377899999999999999999


Q ss_pred             ccCCCCceEEc---cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          243 RDLKPENVLVR---EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       243 rDLKp~NILl~---~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||+|||+.   .+|.+||+|||+|+....                                                
T Consensus       131 rDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~------------------------------------------------  162 (307)
T d1a06a_         131 RDLKPENLLYYSLDEDSKIMISDFGLSKMEDP------------------------------------------------  162 (307)
T ss_dssp             SCCCGGGEEESSSSTTCCEEECCC--------------------------------------------------------
T ss_pred             EEecccceeecccCCCceEEEeccceeEEccC------------------------------------------------
Confidence            99999999995   578999999999843221                                                


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .....+.+||+.|||||++.+..|+.++|||||||++|||++|.+||.+
T Consensus       163 -------------------------------~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  211 (307)
T d1a06a_         163 -------------------------------GSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD  211 (307)
T ss_dssp             -----------------------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             -------------------------------CCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCC
Confidence                                           0112345799999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ....+....+......++......     .+.++++||.+||+.||++|||+.    |+++||||++
T Consensus       212 ~~~~~~~~~i~~~~~~~~~~~~~~-----~s~~~~~li~~~L~~dP~~R~s~~----eil~hp~~~~  269 (307)
T d1a06a_         212 ENDAKLFEQILKAEYEFDSPYWDD-----ISDSAKDFIRHLMEKDPEKRFTCE----QALQHPWIAG  269 (307)
T ss_dssp             SSHHHHHHHHHTTCCCCCTTTTTT-----SCHHHHHHHHHHSCSSGGGSCCHH----HHHHSTTTTS
T ss_pred             CCHHHHHHHHhccCCCCCCccccC-----CCHHHHHHHHHHccCCHhHCcCHH----HHhcCHhhCC
Confidence            999999999988776655433222     223589999999999999999997    9999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-60  Score=465.78  Aligned_cols=266  Identities=29%  Similarity=0.453  Sum_probs=218.4

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++.+......   ...+.+.+|+.+|++++|||||+++++|.+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~   84 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKS-----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN   84 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             cCEEEeEEEecCCCeEEEEEEECC-----CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            679999999999999999999986     678999999865432111   124567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                      .+.+|||||||+||+|.+++...  ..+++..+                            +.++.||+.||+|||++||
T Consensus        85 ~~~~~iv~E~~~gg~L~~~i~~~--~~l~~~~~----------------------------~~~~~qi~~al~yLH~~~i  134 (293)
T d1jksa_          85 KTDVILILELVAGGELFDFLAEK--ESLTEEEA----------------------------TEFLKQILNGVYYLHSLQI  134 (293)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEEcCCCccccchhccc--cccchhHH----------------------------HHHHHHHHHHHHhhhhcce
Confidence            99999999999999999998764  23333332                            4788999999999999999


Q ss_pred             eeccCCCCceEEccCC----cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          241 VYRDLKPENVLVREDG----HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       241 iHrDLKp~NILl~~~~----~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      |||||||+|||++.++    .+||+|||+|+.....                                            
T Consensus       135 vHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~--------------------------------------------  170 (293)
T d1jksa_         135 AHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG--------------------------------------------  170 (293)
T ss_dssp             ECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTS--------------------------------------------
T ss_pred             eecccccceEEEecCCCcccceEecchhhhhhcCCC--------------------------------------------
Confidence            9999999999998776    5999999998543210                                            


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                         ....+..||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus       171 -----------------------------------~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~P  215 (293)
T d1jksa_         171 -----------------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  215 (293)
T ss_dssp             -----------------------------------CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             -----------------------------------ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCC
Confidence                                               112345799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALI  472 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~  472 (517)
                      |.+.+..+.+..+......++.....     ..+.++++||.+||+.||++|||++    |+|+||||+..+|...
T Consensus       216 f~~~~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dP~~R~s~~----eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         216 FLGDTKQETLANVSAVNYEFEDEYFS-----NTSALAKDFIRRLLVKDPKKRMTIQ----DSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             SCCSSHHHHHHHHHTTCCCCCHHHHT-----TSCHHHHHHHHTTSCSSGGGSCCHH----HHHHSTTTCC------
T ss_pred             CCCCCHHHHHHHHHhcCCCCCchhcC-----CCCHHHHHHHHHHccCChhHCcCHH----HHhcCcccCCCChhHh
Confidence            99999999999998877665432211     1223589999999999999999998    9999999999999754

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.6e-60  Score=471.07  Aligned_cols=270  Identities=29%  Similarity=0.409  Sum_probs=225.6

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|++++.||+|+||+||+|+++.     +++.||||++.+....   ..+.+.+|+.+|++++|||||+++++|.+++
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~-----~g~~vAvK~i~~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   96 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERA-----TGNNFAAKFVMTPHES---DKETVRKEIQTMSVLRHPTLVNLHDAFEDDN   96 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT-----TTEEEEEEEECCCSHH---HHHHHHHHHHHHHHTCCTTBCCEEEEEEETT
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEEcccchh---hHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            5789999999999999999999986     6889999999765432   2356778999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++.... ..+++..+                            +.|+.||+.||+|||++||||
T Consensus        97 ~~~ivmE~~~gg~L~~~l~~~~-~~l~e~~~----------------------------~~i~~qi~~aL~ylH~~~iiH  147 (350)
T d1koaa2          97 EMVMIYEFMSGGELFEKVADEH-NKMSEDEA----------------------------VEYMRQVCKGLCHMHENNYVH  147 (350)
T ss_dssp             EEEEEECCCCSCBHHHHHTCTT-SCBCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEcCCCCCHHHHHHhhc-CCCCHHHH----------------------------HHHHHHHHHHHHHHHhcCCee
Confidence            9999999999999999885432 23443333                            478899999999999999999


Q ss_pred             ccCCCCceEEcc--CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLVRE--DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl~~--~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+|||++.  +|.+||+|||+|+.+...                                                
T Consensus       148 rDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~------------------------------------------------  179 (350)
T d1koaa2         148 LDLKPENIMFTTKRSNELKLIDFGLTAHLDPK------------------------------------------------  179 (350)
T ss_dssp             CCCCGGGEEESSTTSCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             eeechhHeeeccCCCCeEEEeecchheecccc------------------------------------------------
Confidence            999999999964  678999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.
T Consensus       180 -------------------------------~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         180 -------------------------------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             -------------------------------SCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -------------------------------cccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence                                           1123457999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCcccccCCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKP  477 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p  477 (517)
                      +..+.+..+......++.....     ..+.++++||.+||+.||++|||+.    |+|+||||+..+|.......|
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dP~~R~t~~----eil~hp~~~~~~~~~~~~~~~  296 (350)
T d1koaa2         229 NDDETLRNVKSCDWNMDDSAFS-----GISEDGKDFIRKLLLADPNTRMTIH----QALEHPWLTPGNAPGRDSQIP  296 (350)
T ss_dssp             SHHHHHHHHHHTCCCSCCGGGG-----GCCHHHHHHHHHHCCSSGGGSCCHH----HHHHSTTTSCTTCCSCCCCBC
T ss_pred             CHHHHHHHHHhCCCCCCccccc-----CCCHHHHHHHHHHccCChhHCcCHH----HHhcCcccCCCCCCCchhhCC
Confidence            9999999998877665543222     1233589999999999999999997    999999999888765444333

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-60  Score=462.16  Aligned_cols=258  Identities=30%  Similarity=0.434  Sum_probs=215.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCce
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHY  163 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  163 (517)
                      +.|++++.||+|+||+||+|+++.     +++.||||++.+..   ....+.+.+|+.+|+.++|||||++++++.+++.
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~   83 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKE-----TSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENN   83 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECSS---SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECC-----CCeEEEEEEECcCC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCe
Confidence            569999999999999999999987     67899999997542   2445677889999999999999999999999999


Q ss_pred             eEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceec
Q 010140          164 SCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYR  243 (517)
Q Consensus       164 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHr  243 (517)
                      +|||||||+||+|.+++.... ..+++..+                            +.|+.||+.||+|||++|||||
T Consensus        84 ~~lvmEy~~~g~L~~~~~~~~-~~l~e~~~----------------------------~~i~~qi~~gL~ylH~~~ivHr  134 (288)
T d2jfla1          84 LWILIEFCAGGAVDAVMLELE-RPLTESQI----------------------------QVVCKQTLDALNYLHDNKIIHR  134 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHHT-SCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEECC
T ss_pred             EEEEEecCCCCcHHHHHHhcC-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCEEEe
Confidence            999999999999999876532 23333333                            4788999999999999999999


Q ss_pred             cCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccc
Q 010140          244 DLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTV  323 (517)
Q Consensus       244 DLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (517)
                      ||||+|||++.+|.+||+|||+|+.....                                                   
T Consensus       135 DiKp~NIll~~~~~~Kl~DFG~a~~~~~~---------------------------------------------------  163 (288)
T d2jfla1         135 DLKAGNILFTLDGDIKLADFGVSAKNTRT---------------------------------------------------  163 (288)
T ss_dssp             CCSGGGEEECTTSCEEECCCTTCEECHHH---------------------------------------------------
T ss_pred             ecChhheeECCCCCEEEEechhhhccCCC---------------------------------------------------
Confidence            99999999999999999999998432210                                                   


Q ss_pred             cccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhc-----CCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          324 TTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVIS-----GQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~-----~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                 .....+.+||+.|||||++.     +..|+.++|||||||++|||++|++||.
T Consensus       164 ---------------------------~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~  216 (288)
T d2jfla1         164 ---------------------------IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH  216 (288)
T ss_dssp             ---------------------------HHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ---------------------------cccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence                                       01123457999999999984     4458999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +.+..+.+.++............      ..+.++++||.+||+.||++|||+.    |+++||||+.
T Consensus       217 ~~~~~~~~~~i~~~~~~~~~~~~------~~s~~~~~li~~~L~~dp~~R~t~~----ell~hp~~~~  274 (288)
T d2jfla1         217 ELNPMRVLLKIAKSEPPTLAQPS------RWSSNFKDFLKKCLEKNVDARWTTS----QLLQHPFVTV  274 (288)
T ss_dssp             TSCGGGHHHHHHHSCCCCCSSGG------GSCHHHHHHHHHHSCSSTTTSCCHH----HHTTSGGGCC
T ss_pred             CCCHHHHHHHHHcCCCCCCCccc------cCCHHHHHHHHHHccCChhHCcCHH----HHhcCcccCC
Confidence            99998888888876543322211      1223589999999999999999997    9999999974

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-60  Score=471.79  Aligned_cols=269  Identities=25%  Similarity=0.358  Sum_probs=208.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|+++++||+|+||+||+|+++.     +++.||+|+++....  .....++.+|+.+|+.++|||||+++++|.+
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~-----~~~~vAiK~i~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~   75 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKP-----SGLVMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGFYGAFYS   75 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETT-----TTEEEEEEEEECCCC--TTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECC-----CCcEEEEEEEChhhC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            456899999999999999999999986     789999999865421  1234567789999999999999999999999


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh-cC
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM-MG  239 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~-~~  239 (517)
                      .+++|||||||+||+|.+++.+.  ..+++..                            ++.++.||+.||.|||+ +|
T Consensus        76 ~~~~~iVmEy~~gg~L~~~l~~~--~~l~~~~----------------------------~~~~~~qil~aL~yLH~~~~  125 (322)
T d1s9ja_          76 DGEISICMEHMDGGSLDQVLKKA--GRIPEQI----------------------------LGKVSIAVIKGLTYLREKHK  125 (322)
T ss_dssp             SSEEEEEEECCTTEEHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEcCCCCcHHHHHhhc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999998764  2233322                            34788999999999997 49


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+||||+.+|++||+|||+|+.+.                                                 
T Consensus       126 IiHRDiKP~NILl~~~~~vkl~DFGla~~~~-------------------------------------------------  156 (322)
T d1s9ja_         126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLI-------------------------------------------------  156 (322)
T ss_dssp             CCCSCCSGGGEEECTTCCEEECCCCCCHHHH-------------------------------------------------
T ss_pred             EEccccCHHHeeECCCCCEEEeeCCCccccC-------------------------------------------------
Confidence            9999999999999999999999999984321                                                 


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                     .....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+
T Consensus       157 -------------------------------~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~  205 (322)
T d1s9ja_         157 -------------------------------DSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP  205 (322)
T ss_dssp             -------------------------------HHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSC
T ss_pred             -------------------------------CCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence                                           0112346899999999999999999999999999999999999999987


Q ss_pred             CChHHHHHHHh---cCC-CCCCCC--------------C-----------------CCCchhHHhhhhHHHHHHHhccCC
Q 010140          400 ENNEKTLINIL---KKP-LTFPRI--------------G-----------------VSSSKEFEEVVKLQDLISKLLVKN  444 (517)
Q Consensus       400 ~~~~~~~~~i~---~~~-~~~p~~--------------~-----------------~~~~~~~~~~~~l~dLi~~~L~~d  444 (517)
                      .+..+......   .+. ...+..              .                 .+.......+.+++|||.+||+.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d  285 (322)
T d1s9ja_         206 PDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN  285 (322)
T ss_dssp             CCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCC
Confidence            65433211100   000 000000              0                 000000011246899999999999


Q ss_pred             cccccCCCCChHHhhcCCCcCCCCcc
Q 010140          445 PKKRIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       445 P~~R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      |++|||+.    |+|+||||+..+|+
T Consensus       286 P~~R~ta~----e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         286 PAERADLK----QLMVHAFIKRSDAE  307 (322)
T ss_dssp             TTTSCCHH----HHHTSHHHHHHHHS
T ss_pred             hhHCcCHH----HHhhCHhhCcCCcc
Confidence            99999998    99999999987764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-59  Score=449.55  Aligned_cols=254  Identities=22%  Similarity=0.365  Sum_probs=202.9

Q ss_pred             CCc-eEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           84 DHF-RLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        84 ~~y-~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      ++| ++.++||+|+||+||+|+++.     +++.||+|++...... ....+++.+|+++|++++|||||+++++|.+  
T Consensus         8 gry~~~~~~iG~G~fg~Vy~~~~~~-----~~~~va~K~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   81 (270)
T d1t4ha_           8 GRFLKFDIEIGRGSFKTVYKGLDTE-----TTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV   81 (270)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES
T ss_pred             CCEEEeeeEEecCcCcEEEEEEECC-----CCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecc
Confidence            345 788899999999999999986     6788999998765332 2345678889999999999999999999864  


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        +..+|||||||+||+|.+++...  ..+++..                            ++.|+.||+.||+|||++
T Consensus        82 ~~~~~~~ivmE~~~~g~L~~~l~~~--~~~~~~~----------------------------~~~~~~qi~~gl~yLH~~  131 (270)
T d1t4ha_          82 KGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKV----------------------------LRSWCRQILKGLQFLHTR  131 (270)
T ss_dssp             SSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHH----------------------------HHHHHHHHHHHHHHHHTS
T ss_pred             ccCCEEEEEEeCCCCCcHHHHHhcc--ccccHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence              45789999999999999998764  2233322                            247789999999999999


Q ss_pred             C--ceeccCCCCceEEc-cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          239 G--IVYRDLKPENVLVR-EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       239 ~--iiHrDLKp~NILl~-~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |  ||||||||+||||+ .++.+||+|||+|+...                                             
T Consensus       132 ~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~---------------------------------------------  166 (270)
T d1t4ha_         132 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR---------------------------------------------  166 (270)
T ss_dssp             SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC---------------------------------------------
T ss_pred             CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc---------------------------------------------
Confidence            9  99999999999997 57899999999984211                                             


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         .....+.+||+.|||||++.+ .|+.++|||||||++|||++|+.
T Consensus       167 -----------------------------------~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~  210 (270)
T d1t4ha_         167 -----------------------------------ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEY  210 (270)
T ss_dssp             -----------------------------------TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------CCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCC
Confidence                                               011234579999999999976 49999999999999999999999


Q ss_pred             CCCCCChHHH-HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          396 PFKGENNEKT-LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       396 Pf~~~~~~~~-~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      ||.+...... +..+..+. ..+.....      ..+++++||.+||+.||++|||+.    |+|+||||+
T Consensus       211 Pf~~~~~~~~~~~~i~~~~-~~~~~~~~------~~~~~~~li~~~l~~dp~~R~s~~----ell~Hp~fk  270 (270)
T d1t4ha_         211 PYSECQNAAQIYRRVTSGV-KPASFDKV------AIPEVKEIIEGCIRQNKDERYSIK----DLLNHAFFQ  270 (270)
T ss_dssp             TTTTCSSHHHHHHHHTTTC-CCGGGGGC------CCHHHHHHHHHHSCSSGGGSCCHH----HHHTSGGGC
T ss_pred             CCCCcccHHHHHHHHHcCC-CCcccCcc------CCHHHHHHHHHHccCCHhHCcCHH----HHhCCcccC
Confidence            9987665544 44444432 22211111      123589999999999999999997    999999996

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-60  Score=455.36  Aligned_cols=258  Identities=23%  Similarity=0.341  Sum_probs=204.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .++|++++.||+|+||+||+|+++.     +++.||||++...... ....+.+.+|+.+|++++|||||++++++.+  
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   76 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKS-----DGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT   76 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT-----TCCEEEEEEECCTTSC-HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC--
T ss_pred             chhCEEeEEEecCCCeEEEEEEECC-----CCCEEEEEEEChhhCC-HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCC
Confidence            4789999999999999999999987     6789999998765332 2335667889999999999999999999864  


Q ss_pred             CceeEEEEEecCCCchhHHHHhCC--CCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQP--GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ++.+|||||||+||+|.+++....  ...+++..                            ++.++.||+.||+|||++
T Consensus        77 ~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~----------------------------~~~i~~qi~~al~ylH~~  128 (269)
T d2java1          77 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEF----------------------------VLRVMTQLTLALKECHRR  128 (269)
T ss_dssp             --CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCcHHHHHHhccccCCCCCHHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence            567899999999999999886532  12233322                            347889999999999998


Q ss_pred             C-----ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccc
Q 010140          239 G-----IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHG  313 (517)
Q Consensus       239 ~-----iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                      |     ||||||||+||||+.+|.+||+|||+|+.+...                                         
T Consensus       129 ~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~-----------------------------------------  167 (269)
T d2java1         129 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD-----------------------------------------  167 (269)
T ss_dssp             CC---------CCGGGEEECTTSCEEECCHHHHHHC--------------------------------------------
T ss_pred             cCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccC-----------------------------------------
Confidence            7     999999999999999999999999998543210                                         


Q ss_pred             cccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC
Q 010140          314 KKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG  393 (517)
                                                           .......+||+.|||||++.+..|+.++|||||||++|||++|
T Consensus       168 -------------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg  210 (269)
T d2java1         168 -------------------------------------TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCAL  210 (269)
T ss_dssp             ---------------------------------------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhC
Confidence                                                 0112345799999999999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +.||.+.+..+...++.........  ...      +.++.+||.+||+.||++|||+.    |+++|||+
T Consensus       211 ~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~------s~~l~~li~~~L~~dp~~Rps~~----ell~hp~i  269 (269)
T d2java1         211 MPPFTAFSQKELAGKIREGKFRRIP--YRY------SDELNEIITRMLNLKDYHRPSVE----EILENPLI  269 (269)
T ss_dssp             SCSCCCSSHHHHHHHHHHTCCCCCC--TTS------CHHHHHHHHHHTCSSGGGSCCHH----HHHTSTTC
T ss_pred             CCCCCCCCHHHHHHHHHcCCCCCCC--ccc------CHHHHHHHHHHcCCChhHCcCHH----HHHhCCcC
Confidence            9999999988888888876543221  111      22589999999999999999998    99999995

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.8e-59  Score=466.37  Aligned_cols=260  Identities=28%  Similarity=0.444  Sum_probs=220.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||.||+|+++.     +++.||||++.+....   ....+.+|+.+|++++|||||+++++|.+++
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~-----~~~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~   99 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKA-----TGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKY   99 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSS
T ss_pred             ccceEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEECCcchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            3679999999999999999999886     6789999998765432   2345677999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      .+|||||||+||+|.+++.... ..+++.++                            +.|+.||+.||+|||++||||
T Consensus       100 ~~~ivmE~~~gg~L~~~~~~~~-~~l~e~~~----------------------------~~i~~qi~~aL~ylH~~~iiH  150 (352)
T d1koba_         100 EMVLILEFLSGGELFDRIAAED-YKMSEAEV----------------------------INYMRQACEGLKHMHEHSIVH  150 (352)
T ss_dssp             EEEEEEECCCCCBHHHHTTCTT-CCBCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEcCCCChHHHHHHhcC-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHCCeee
Confidence            9999999999999988765432 23444333                            477899999999999999999


Q ss_pred             ccCCCCceEEc--cCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLVR--EDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl~--~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+||||+  .+|.+||+|||+|+.+...                                                
T Consensus       151 RDiKp~NILl~~~~~~~vkL~DFGla~~~~~~------------------------------------------------  182 (352)
T d1koba_         151 LDIKPENIMCETKKASSVKIIDFGLATKLNPD------------------------------------------------  182 (352)
T ss_dssp             CCCCGGGEEESSTTCCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             cccccccccccccCCCeEEEeecccceecCCC------------------------------------------------
Confidence            99999999997  5789999999998543310                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     .......||+.|||||++.+..|+.++|||||||++|||++|.+||.+.
T Consensus       183 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         183 -------------------------------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             -------------------------------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             -------------------------------CceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence                                           1123457999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +..+.+..+......++.......     +.++.+||.+||+.||.+|||+.    |+|+||||++.
T Consensus       232 ~~~~~~~~i~~~~~~~~~~~~~~~-----s~~~~~li~~~L~~dp~~R~s~~----eil~Hp~~~~~  289 (352)
T d1koba_         232 DDLETLQNVKRCDWEFDEDAFSSV-----SPEAKDFIKNLLQKEPRKRLTVH----DALEHPWLKGD  289 (352)
T ss_dssp             SHHHHHHHHHHCCCCCCSSTTTTS-----CHHHHHHHHTTSCSSGGGSCCHH----HHHTSTTTSSC
T ss_pred             CHHHHHHHHHhCCCCCCcccccCC-----CHHHHHHHHHHccCChhHCcCHH----HHhcCHhhCCC
Confidence            999999999888776665443322     23589999999999999999997    99999999874

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-59  Score=458.79  Aligned_cols=254  Identities=27%  Similarity=0.355  Sum_probs=213.1

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCcee
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYS  164 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  164 (517)
                      .|++++.||+|+||+||+|+++.     +++.||||++...........+.+.+|+.+|++++|||||+++++|.+++.+
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~   90 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA   90 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECC-----CCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEE
Confidence            49999999999999999999887     6889999998765433345567788899999999999999999999999999


Q ss_pred             EEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceecc
Q 010140          165 CLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRD  244 (517)
Q Consensus       165 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrD  244 (517)
                      |||||||+||+|..++...  ..+++..                            ++.|+.||+.||.|||++||||||
T Consensus        91 ~iv~E~~~~g~l~~~~~~~--~~l~e~~----------------------------~~~i~~qi~~aL~yLH~~~iiHrD  140 (309)
T d1u5ra_          91 WLVMEYCLGSASDLLEVHK--KPLQEVE----------------------------IAAVTHGALQGLAYLHSHNMIHRD  140 (309)
T ss_dssp             EEEEECCSEEHHHHHHHHT--SCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred             EEEEEecCCCchHHHHHhC--CCCCHHH----------------------------HHHHHHHHHHHHHHHHhCCEeccC
Confidence            9999999999997665543  2333333                            347889999999999999999999


Q ss_pred             CCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccc
Q 010140          245 LKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVT  324 (517)
Q Consensus       245 LKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                      |||+||||+.+|.+||+|||+|+...                                                      
T Consensus       141 iKp~NILl~~~~~~Kl~DFG~a~~~~------------------------------------------------------  166 (309)
T d1u5ra_         141 VKAGNILLSEPGLVKLGDFGSASIMA------------------------------------------------------  166 (309)
T ss_dssp             CSGGGEEEETTTEEEECCCTTCBSSS------------------------------------------------------
T ss_pred             CCcceEEECCCCCEEEeecccccccC------------------------------------------------------
Confidence            99999999999999999999984321                                                      


Q ss_pred             ccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC---CCCCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          325 TIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG---QGHGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~---~~~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .....+||+.|||||++.+   ..|+.++|||||||++|||++|..||.+.+
T Consensus       167 ----------------------------~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~  218 (309)
T d1u5ra_         167 ----------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (309)
T ss_dssp             ----------------------------SBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             ----------------------------CCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCC
Confidence                                        1123479999999999975   348999999999999999999999999998


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          402 NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ..+.+.++.......+... ..      +.++++||.+||+.||++|||+.    |+|+||||..
T Consensus       219 ~~~~~~~i~~~~~~~~~~~-~~------s~~~~~li~~~L~~dP~~Rpt~~----ell~Hp~~~~  272 (309)
T d1u5ra_         219 AMSALYHIAQNESPALQSG-HW------SEYFRNFVDSCLQKIPQDRPTSE----VLLKHRFVLR  272 (309)
T ss_dssp             HHHHHHHHHHSCCCCCSCT-TS------CHHHHHHHHHHTCSSGGGSCCHH----HHTTCHHHHS
T ss_pred             HHHHHHHHHhCCCCCCCCC-CC------CHHHHHHHHHHCcCChhHCcCHH----HHHhCHHhcC
Confidence            8888888877654433221 11      22589999999999999999998    9999999964

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.4e-57  Score=440.46  Aligned_cols=260  Identities=29%  Similarity=0.450  Sum_probs=218.1

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHH------HHHHHHHhHHHHHHHHHHhcC-CCCccceee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREA------LAIRKKLHRADMEKVILTMLD-HPFLPTLYA  156 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~------~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~  156 (517)
                      ++|++++.||+|+||+||+|+++.     +++.||||++.+..      .......+++.+|+.+|++++ |||||++++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~   77 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKP-----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKD   77 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             ccCEEceEEecCcCeEEEEEEECC-----CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            689999999999999999999876     68899999986532      122344567888999999997 999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      +|.+++++|||||||+||+|.+++...  ..+++..+                            +.|+.||+.||+|||
T Consensus        78 ~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~----------------------------~~~~~qi~~al~~lH  127 (277)
T d1phka_          78 TYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKET----------------------------RKIMRALLEVICALH  127 (277)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHH----------------------------HHHHHHHHHHHHHHH
T ss_pred             ecccCcceEEEEEcCCCchHHHHHHhc--CCCCHHHH----------------------------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999764  23443333                            478899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+||+|||+++.+..                                             
T Consensus       128 ~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~---------------------------------------------  162 (277)
T d1phka_         128 KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP---------------------------------------------  162 (277)
T ss_dssp             HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT---------------------------------------------
T ss_pred             HcCCcccccccceEEEcCCCCeEEccchheeEccC---------------------------------------------
Confidence            99999999999999999999999999999854321                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC------CCCCccchHHHHHHHHHHH
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG------QGHGSAVDWWTLGVFLYEM  390 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~------~~~~~~~DiWSlGvil~el  390 (517)
                                                        .......+||+.|+|||++.+      ..++.++||||+||++|||
T Consensus       163 ----------------------------------~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyem  208 (277)
T d1phka_         163 ----------------------------------GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTL  208 (277)
T ss_dssp             ----------------------------------TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHH
T ss_pred             ----------------------------------CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhh
Confidence                                              011234579999999999863      3478899999999999999


Q ss_pred             hhCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          391 LYGTTPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       391 ltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      ++|+.||.+.+..+.+..+..+...++.....     ..+.++++||.+||+.||++||++.    |+|+||||+.
T Consensus       209 l~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~~p~~R~s~~----eil~h~~~~~  275 (277)
T d1phka_         209 LAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWD-----DYSDTVKDLVSRFLVVQPQKRYTAE----EALAHPFFQQ  275 (277)
T ss_dssp             HHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGG-----GSCHHHHHHHHHHCCSSGGGSCCHH----HHTTSGGGCT
T ss_pred             ccCCCCCCCCCHHHHHHHHHhCCCCCCCcccc-----cCCHHHHHHHHHHccCChhHCcCHH----HHHcCHHHHH
Confidence            99999999999999888888876655433221     2233699999999999999999997    9999999985

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-58  Score=451.45  Aligned_cols=258  Identities=25%  Similarity=0.399  Sum_probs=217.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||+||+|+++.     +++.||||+++.....    ...+.+|+.+|+.++|||||+++++|++++
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~-----~~~~~AiK~i~~~~~~----~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~   74 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETS-----SKKTYMAKFVKVKGTD----QVLVKKEISILNIARHRNILHLHESFESME   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECCCTHH----HHHHHHHHHHHHHSCCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEEecCCCeEEEEEEECC-----CCcEEEEEEEcCCccc----HHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            4789999999999999999999987     6889999999866422    234667999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++|||||||+||+|.+++.... ..+++.++                            +.|+.||+.||+|||++||+|
T Consensus        75 ~~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~----------------------------~~i~~qi~~al~yLH~~~iiH  125 (321)
T d1tkia_          75 ELVMIFEFISGLDIFERINTSA-FELNEREI----------------------------VSYVHQVCEALQFLHSHNIGH  125 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEecCCCCcHHHHHHhcC-CCCCHHHH----------------------------HHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999886542 23333333                            477899999999999999999


Q ss_pred             ccCCCCceEEccC--CcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          243 RDLKPENVLVRED--GHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       243 rDLKp~NILl~~~--~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      |||||+|||++.+  +.+||+|||+++.....                                                
T Consensus       126 rDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~------------------------------------------------  157 (321)
T d1tkia_         126 FDIRPENIIYQTRRSSTIKIIEFGQARQLKPG------------------------------------------------  157 (321)
T ss_dssp             CCCCGGGEEESSSSCCCEEECCCTTCEECCTT------------------------------------------------
T ss_pred             ccccccceeecCCCceEEEEcccchhhccccC------------------------------------------------
Confidence            9999999999854  48999999998543210                                                


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE  400 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~  400 (517)
                                                     ......+||+.|+|||.+.+..|+.++|||||||++|+|++|.+||.+.
T Consensus       158 -------------------------------~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~  206 (321)
T d1tkia_         158 -------------------------------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             -------------------------------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             -------------------------------CcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC
Confidence                                           1122346899999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      +..+.+..+......++.....     ..+.++++||.+||+.||++|||+.    |+++||||+.
T Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~-----~~s~~~~~li~~~L~~dp~~R~s~~----eil~hp~~~~  263 (321)
T d1tkia_         207 TNQQIIENIMNAEYTFDEEAFK-----EISIEAMDFVDRLLVKERKSRMTAS----EALQHPWLKQ  263 (321)
T ss_dssp             SHHHHHHHHHHTCCCCCHHHHT-----TSCHHHHHHHHTTSCSSGGGSCCHH----HHHHSHHHHS
T ss_pred             CHHHHHHHHHhCCCCCChhhcc-----CCCHHHHHHHHHHccCChhHCcCHH----HHhcCHhhcc
Confidence            9999999999887766542221     1233589999999999999999997    9999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-57  Score=443.11  Aligned_cols=264  Identities=27%  Similarity=0.321  Sum_probs=203.4

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHH--HHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeE
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAI--RKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSC  165 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  165 (517)
                      .+++||+|+||+||+|+++.     +++.||||+++......  .....++.+|+.+|+.++|||||+++++|.+++++|
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~   76 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKN-----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   76 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSS-----CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             cceEeccCcCeEEEEEEECC-----CCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCcee
Confidence            57899999999999999886     67899999997654322  123456888999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccC
Q 010140          166 LVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDL  245 (517)
Q Consensus       166 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDL  245 (517)
                      ||||||.|+++..+....  ..+++..+                            +.|++||+.||+|||++||+||||
T Consensus        77 ivmE~~~~~~~~~~~~~~--~~l~~~~~----------------------------~~~~~qil~aL~~lH~~~iiHrDi  126 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKDNS--LVLTPSHI----------------------------KAYMLMTLQGLEYLHQHWILHRDL  126 (299)
T ss_dssp             EEEECCSEEHHHHHTTCC--SSCCSSHH----------------------------HHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             ehhhhhcchHHhhhhhcc--cCCCHHHH----------------------------HHHHHHHHHHHHHhhccceecccC
Confidence            999999887776554322  33433333                            478899999999999999999999


Q ss_pred             CCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccc
Q 010140          246 KPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTT  325 (517)
Q Consensus       246 Kp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (517)
                      ||+|||++.++.+||+|||+|+.....                                                     
T Consensus       127 Kp~NIli~~~~~~KL~DFG~a~~~~~~-----------------------------------------------------  153 (299)
T d1ua2a_         127 KPNNLLLDENGVLKLADFGLAKSFGSP-----------------------------------------------------  153 (299)
T ss_dssp             CGGGEEECTTCCEEECCCGGGSTTTSC-----------------------------------------------------
T ss_pred             CcceEEecCCCccccccCccccccCCC-----------------------------------------------------
Confidence            999999999999999999998543210                                                     


Q ss_pred             cccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCCCCCCCChHH
Q 010140          326 IREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTTPFKGENNEK  404 (517)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~Pf~~~~~~~  404 (517)
                                               .......+||+.|+|||++.+. .|+.++|||||||++|||++|.+||.+.+..+
T Consensus       154 -------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~  208 (299)
T d1ua2a_         154 -------------------------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD  208 (299)
T ss_dssp             -------------------------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             -------------------------cccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHH
Confidence                                     1112345799999999998755 58999999999999999999999999999888


Q ss_pred             HHHHHhcCCCCCCCC-----C------------CCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          405 TLINILKKPLTFPRI-----G------------VSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       405 ~~~~i~~~~~~~p~~-----~------------~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      .+.++.+.....+..     .            ......  .....++.+||.+||+.||++|||+.    |+|+||||+
T Consensus       209 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~----e~L~Hp~f~  284 (299)
T d1ua2a_         209 QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITAT----QALKMKYFS  284 (299)
T ss_dssp             HHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHH----HHHTSGGGT
T ss_pred             HHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHH----HHhCCHhhC
Confidence            887776421110000     0            000000  01234689999999999999999998    999999998


Q ss_pred             CCC
Q 010140          466 GIN  468 (517)
Q Consensus       466 ~~~  468 (517)
                      +..
T Consensus       285 ~~p  287 (299)
T d1ua2a_         285 NRP  287 (299)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-57  Score=440.39  Aligned_cols=268  Identities=25%  Similarity=0.356  Sum_probs=210.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|+++++||+|+||+||+|+++.     +++.||||+++..... .....++.+|+.+|++++|||||+++++|.+++
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~~~-~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~   74 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKL-----TGEVVALKKIRLDTET-EGVPSTAIREISLLKELNHPNIVKLLDVIHTEN   74 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             CCCCEeccEEecCcCeEEEEEEECC-----CCCEEEEEEEehhhcC-hHHHHHHHHHHHHHHhCCCCcEEEecccccccc
Confidence            4789999999999999999999986     6789999999765422 334567888999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ++|+|||||. |.+..++.......+++..+                            +.|+.||+.||+|||++||||
T Consensus        75 ~~~iv~e~~~-~~~~~~~~~~~~~~l~e~~~----------------------------~~~~~qil~~L~yLH~~~IiH  125 (298)
T d1gz8a_          75 KLYLVFEFLH-QDLKKFMDASALTGIPLPLI----------------------------KSYLFQLLQGLAFCHSHRVLH  125 (298)
T ss_dssp             EEEEEEECCS-EEHHHHHHHTTTTCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             ceeEEEeecC-CchhhhhhhhcccCCCHHHH----------------------------HHHHHHHHHHHHHhhcCCEEc
Confidence            9999999995 56666665544444544433                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+|+.....                                                  
T Consensus       126 rDiKpeNIl~~~~~~~kl~DFG~a~~~~~~--------------------------------------------------  155 (298)
T d1gz8a_         126 RDLKPQNLLINTEGAIKLADFGLARAFGVP--------------------------------------------------  155 (298)
T ss_dssp             SCCCGGGEEECTTSCEEECSTTHHHHHCCC--------------------------------------------------
T ss_pred             cccCchheeecccCcceeccCCcceeccCC--------------------------------------------------
Confidence            999999999999999999999998432210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  .......+||+.|+|||++.... ++.++|||||||++|+|++|+.||.+.+
T Consensus       156 ----------------------------~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~  207 (298)
T d1gz8a_         156 ----------------------------VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS  207 (298)
T ss_dssp             ----------------------------SBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ----------------------------cccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCC
Confidence                                        11223457999999999988776 5889999999999999999999999998


Q ss_pred             hHHHHHHHhcCCCCCCCCCCC---------------Cchh-----HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVS---------------SSKE-----FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~---------------~~~~-----~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+.+.++.............               ....     ...+.++.+||.+||+.||++|||+.    |||+|
T Consensus       208 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~----ell~H  283 (298)
T d1gz8a_         208 EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAK----AALAH  283 (298)
T ss_dssp             HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHH----HHHTS
T ss_pred             HHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHH----HHhCC
Confidence            887777665321111110000               0000     01224689999999999999999998    99999


Q ss_pred             CCcCCC
Q 010140          462 EFFKGI  467 (517)
Q Consensus       462 p~f~~~  467 (517)
                      |||+++
T Consensus       284 ~ff~~~  289 (298)
T d1gz8a_         284 PFFQDV  289 (298)
T ss_dssp             GGGTTC
T ss_pred             HhhccC
Confidence            999876

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-56  Score=445.69  Aligned_cols=256  Identities=25%  Similarity=0.365  Sum_probs=202.9

Q ss_pred             CCCCceEEe-eeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHh-cCCCCccceeeeee
Q 010140           82 GLDHFRLLR-RLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTM-LDHPFLPTLYAEFE  159 (517)
Q Consensus        82 ~~~~y~i~~-~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~  159 (517)
                      .+++|+++. .||+|+||+||+|+++.     +++.||||++++..        .+.+|+.++.+ ++|||||+++++|+
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~-----~~~~vAiK~i~~~~--------~~~~E~~~~~~~~~hpnIv~l~~~~~   75 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKR-----TQEKFALKMLQDCP--------KARREVELHWRASQCPHIVRIVDVYE   75 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETT-----TCCEEEEEEEECSH--------HHHHHHHHHHHHTTSTTBCCEEEEEE
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECC-----CCCEEEEEEECCcH--------HHHHHHHHHHHhcCCCCCCeEEEEEe
Confidence            357899885 59999999999999987     67899999997542        34458888765 48999999999997


Q ss_pred             c----CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          160 A----SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       160 ~----~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +    +.++|||||||+||+|.+++.......+++.++                            +.|+.||+.||+||
T Consensus        76 ~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~----------------------------~~i~~qi~~al~yl  127 (335)
T d2ozaa1          76 NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREA----------------------------SEIMKSIGEAIQYL  127 (335)
T ss_dssp             EEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             ecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHH----------------------------HHHHHHHHHHHHHH
Confidence            5    567999999999999999998754445555444                            37789999999999


Q ss_pred             HhcCceeccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSH  312 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (517)
                      |++||+||||||+|||++.   ++.+||+|||+|+.....                                        
T Consensus       128 H~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~----------------------------------------  167 (335)
T d2ozaa1         128 HSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH----------------------------------------  167 (335)
T ss_dssp             HHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCC----------------------------------------
T ss_pred             HHcCCccccccccccccccccccccccccccceeeeccCC----------------------------------------
Confidence            9999999999999999985   567999999998543210                                        


Q ss_pred             ccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh
Q 010140          313 GKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY  392 (517)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt  392 (517)
                                                             ......+||+.|||||++.+..|+.++|||||||++|+|++
T Consensus       168 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~llt  208 (335)
T d2ozaa1         168 ---------------------------------------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC  208 (335)
T ss_dssp             ---------------------------------------CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTT
T ss_pred             ---------------------------------------CccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhh
Confidence                                                   11234579999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhc----CCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCC
Q 010140          393 GTTPFKGENNEKTLINILK----KPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKG  466 (517)
Q Consensus       393 G~~Pf~~~~~~~~~~~i~~----~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~  466 (517)
                      |++||.+.+.......+..    ....+|.     ......+.++.+||.+||+.||++|||+.    |+++||||..
T Consensus       209 g~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~s~~~~~li~~~L~~dP~~R~s~~----eil~hp~~~~  277 (335)
T d2ozaa1         209 GYPPFYSNHGLAISPGMKTRIRMGQYEFPN-----PEWSEVSEEVKMLIRNLLKTEPTQRMTIT----EFMNHPWIMQ  277 (335)
T ss_dssp             SSCSCEETTCC--------CCCSCSSSCCT-----THHHHSCHHHHHHHHHHSCSSTTTSCCHH----HHHHSHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCCCCC-----cccccCCHHHHHHHHHHccCChhHCcCHH----HHHcCHHhhC
Confidence            9999988766554443332    2223322     12223445799999999999999999987    9999999964

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-55  Score=437.82  Aligned_cols=287  Identities=18%  Similarity=0.216  Sum_probs=213.9

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +++..++|+++++||+|+||+||+|+++..........||+|++.....  ......+.+|+.+|.++ +|||||+++++
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~HpnIv~l~~~  109 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD--SSEREALMSELKMMTQLGSHENIVNLLGA  109 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC--HHHHHHHHHHHHHHHHhcCCCcEeEEEEE
Confidence            4566789999999999999999999998644333456799999876532  23455677899999998 89999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+.+.+|||||||+||+|.+++...... +.........      ............+....++.|+.||+.||+|||+
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~  182 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREK-FSEDEIEYEN------QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF  182 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTC-C---------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCC-Ccchhhhhcc------ccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999765321 1111110000      0000000111223444567899999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+|||++.++.+||+|||+|+.......                                           
T Consensus       183 ~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~-------------------------------------------  219 (325)
T d1rjba_         183 KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN-------------------------------------------  219 (325)
T ss_dssp             TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTT-------------------------------------------
T ss_pred             CCeeeccCchhccccccCCeEEEeeccccccccCCCc-------------------------------------------
Confidence            9999999999999999999999999999854321110                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       .....+..||+.|||||++.+..|+.++|||||||++|||++ |.+|
T Consensus       220 ---------------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~P  266 (325)
T d1rjba_         220 ---------------------------------YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP  266 (325)
T ss_dssp             ---------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ---------------------------------eeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCC
Confidence                                             011224468999999999999999999999999999999997 8999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      |.+.+..+.+.+++.....++....       .+.++++||.+||+.||++|||+.    ||++|
T Consensus       267 f~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~l~~li~~cl~~dP~~RPt~~----ei~~~  320 (325)
T d1rjba_         267 YPGIPVDANFYKLIQNGFKMDQPFY-------ATEEIYIIMQSCWAFDSRKRPSFP----NLTSF  320 (325)
T ss_dssp             STTCCCSHHHHHHHHTTCCCCCCTT-------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCCCc-------CCHHHHHHHHHHcCCChhHCcCHH----HHHHH
Confidence            9998877777777766544332221       123589999999999999999997    88765

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-56  Score=441.81  Aligned_cols=284  Identities=37%  Similarity=0.698  Sum_probs=222.5

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH-HHHHHhHHHHHHHHHHhcCC-CCccceeeee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA-IRKKLHRADMEKVILTMLDH-PFLPTLYAEF  158 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~  158 (517)
                      +.+++|++++.||+|+||+||+|++....  .+++.||||++++.... .....+++.+|+.+|++++| |||+++++++
T Consensus        21 ~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~--~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~   98 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYGKVFLVRKISGH--DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF   98 (322)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECSST--TTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred             cchhceEEEEEEecCCCeEEEEEEECccC--CCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee
Confidence            56789999999999999999999885422  15789999998654211 11234556679999999966 8999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ++...+|+||||+.||+|.+++....  .+.+..                            ++.+++||+.||+|||++
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~----------------------------~~~~~~Qi~~al~~lH~~  148 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQRE--RFTEHE----------------------------VQIYVGEIVLALEHLHKL  148 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS--CCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             ccCCceeeeeecccccHHHHHHHhcc--cccHHH----------------------------HHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999987652  222222                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+|||++.+|.+||+|||+++.+....                                             
T Consensus       149 ~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~---------------------------------------------  183 (322)
T d1vzoa_         149 GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE---------------------------------------------  183 (322)
T ss_dssp             TCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG---------------------------------------------
T ss_pred             CEEeccCCccceeecCCCCEEEeeccchhhhcccc---------------------------------------------
Confidence            99999999999999999999999999985443111                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC--CCccchHHHHHHHHHHHhhCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG--HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~--~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                      .....+..||+.|+|||.+.+..  ++.++|||||||+||||++|+.|
T Consensus       184 --------------------------------~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~P  231 (322)
T d1vzoa_         184 --------------------------------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASP  231 (322)
T ss_dssp             --------------------------------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCT
T ss_pred             --------------------------------cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCC
Confidence                                            11123457999999999998654  68899999999999999999999


Q ss_pred             CCCCChHHHHHH----HhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCC-ChHHhhcCCCcCCCCccc
Q 010140          397 FKGENNEKTLIN----ILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLK-GSVEIKRHEFFKGINWAL  471 (517)
Q Consensus       397 f~~~~~~~~~~~----i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~-~~~ell~hp~f~~~~~~~  471 (517)
                      |.+.+.......    .......+|..         .+.++.+||.+||++||++||++.. .++|+++||||++++|..
T Consensus       232 F~~~~~~~~~~~i~~~~~~~~~~~~~~---------~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~  302 (322)
T d1vzoa_         232 FTVDGEKNSQAEISRRILKSEPPYPQE---------MSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDD  302 (322)
T ss_dssp             TSCTTSCCCHHHHHHHHHHCCCCCCTT---------SCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHH
T ss_pred             CCCCCHHHHHHHHHHhcccCCCCCccc---------CCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHH
Confidence            987655433333    33343333321         1235899999999999999998642 467999999999999997


Q ss_pred             c--cCCCCCCCCC
Q 010140          472 I--RSIKPPEVPN  482 (517)
Q Consensus       472 ~--~~~~p~~~~~  482 (517)
                      +  +.++||.+|.
T Consensus       303 l~~~~~~~p~~p~  315 (322)
T d1vzoa_         303 LAAKKVPAPFKPV  315 (322)
T ss_dssp             HHTTCSCCSCCCC
T ss_pred             HHhCCCCcCCCCC
Confidence            7  5677887774

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-55  Score=429.21  Aligned_cols=257  Identities=20%  Similarity=0.237  Sum_probs=205.0

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ++++..++|++.++||+|+||+||+|+++.     +++.||||+++.+.    ...+++.+|+.+|++++|||||+++++
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~-----~~~~vAvK~i~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~   81 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKK-----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV   81 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGG-----GTEEEEEEECCTTC----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECC-----CCeEEEEEEECCcc----chHHHHHHHHHHHHhCCCCCEecCCcc
Confidence            456777899999999999999999999987     67899999997653    234567789999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+++.+|+|||||++|+|.+++.......+++...                            +.|+.||+.||+|||+
T Consensus        82 ~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~----------------------------~~i~~qi~~gL~yLH~  133 (287)
T d1opja_          82 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL----------------------------LYMATQISSAMEYLEK  133 (287)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EeeCCeeEEEeecccCcchHHHhhhccccchHHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999987754444433322                            3678999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.++.+||+|||+|+.......                                           
T Consensus       134 ~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~-------------------------------------------  170 (287)
T d1opja_         134 KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-------------------------------------------  170 (287)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS-------------------------------------------
T ss_pred             CCcccCccccCeEEECCCCcEEEccccceeecCCCCc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                        .......||+.|+|||++.+..|+.++|||||||++|||++|..||
T Consensus       171 ----------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~  216 (287)
T d1opja_         171 ----------------------------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP  216 (287)
T ss_dssp             ----------------------------------EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ----------------------------------eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCC
Confidence                                              0112235899999999999999999999999999999999976665


Q ss_pred             C-CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          398 K-GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       398 ~-~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      . +.+.......+..+ ...+... ..      +.++.+||.+||+.||++|||+.    |+++
T Consensus       217 ~~~~~~~~~~~~i~~~-~~~~~~~-~~------~~~l~~li~~cl~~dP~~Rps~~----ei~~  268 (287)
T d1opja_         217 YPGIDLSQVYELLEKD-YRMERPE-GC------PEKVYELMRACWQWNPSDRPSFA----EIHQ  268 (287)
T ss_dssp             STTCCHHHHHHHHHTT-CCCCCCT-TC------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCcchHHHHHHHHhcC-CCCCCCc-cc------hHHHHHHHHHHcCCCHhHCcCHH----HHHH
Confidence            4 44444444444333 2222211 11      22589999999999999999997    7654

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-55  Score=432.29  Aligned_cols=271  Identities=25%  Similarity=0.334  Sum_probs=206.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc---CCCCccceeeeee
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML---DHPFLPTLYAEFE  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l---~HpnIv~l~~~~~  159 (517)
                      .++|+++++||+|+||+||+|++..+    .++.||||+++..... ......+.+|+.+|+.|   +||||++++++|.
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~----~~~~vAiK~i~~~~~~-~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~   80 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKN----GGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCT   80 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTT----TTEEEEEEEEEEEBCT-TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECC----CCEEEEEEEEehhhcc-chHHHHHHHHHHHHHHHhhcCCCCcceeeeeec
Confidence            47899999999999999999998652    4578999998653211 12233455678777766   7999999999985


Q ss_pred             -----cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          160 -----ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       160 -----~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                           ....+|++||||.++++.... ......+++..                            ++.++.||+.||+|
T Consensus        81 ~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~----------------------------~~~~~~qi~~aL~y  131 (305)
T d1blxa_          81 VSRTDRETKLTLVFEHVDQDLTTYLD-KVPEPGVPTET----------------------------IKDMMFQLLRGLDF  131 (305)
T ss_dssp             EEECSSEEEEEEEEECCSCBHHHHHH-HSCTTCSCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             ccccccCceEEEEEEeccCCchhhhh-hccCCCCCHHH----------------------------HHHHHHHHHHHHHH
Confidence                 345789999999877665433 33233333332                            24788999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++|||||||||+|||++.++.+||+|||+++....                                           
T Consensus       132 LH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~-------------------------------------------  168 (305)
T d1blxa_         132 LHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF-------------------------------------------  168 (305)
T ss_dssp             HHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCG-------------------------------------------
T ss_pred             HHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhcc-------------------------------------------
Confidence            9999999999999999999999999999999843221                                           


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~  394 (517)
                                                          .......+||+.|||||++.+..|+.++|||||||++|||++|+
T Consensus       169 ------------------------------------~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~  212 (305)
T d1blxa_         169 ------------------------------------QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK  212 (305)
T ss_dssp             ------------------------------------GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCC
Confidence                                                11123457999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCC-----CCCC-----------CCCCchh--HHhhhhHHHHHHHhccCCcccccCCCCChH
Q 010140          395 TPFKGENNEKTLINILKKPLT-----FPRI-----------GVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSV  456 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~-----~p~~-----------~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~  456 (517)
                      +||.+.+..+.+..+......     ++..           .......  ......+.+||.+||++||++|||+.    
T Consensus       213 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~----  288 (305)
T d1blxa_         213 PLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY----  288 (305)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHH----
T ss_pred             CCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHH----
Confidence            999999988887776532110     0000           0000000  01233589999999999999999997    


Q ss_pred             HhhcCCCcCCCCcc
Q 010140          457 EIKRHEFFKGINWA  470 (517)
Q Consensus       457 ell~hp~f~~~~~~  470 (517)
                      |+|+||||+++++.
T Consensus       289 e~L~Hpff~~i~~~  302 (305)
T d1blxa_         289 SALSHPYFQDLERC  302 (305)
T ss_dssp             HHHTSGGGTTCCCC
T ss_pred             HHhcChhhcCchhh
Confidence            99999999998864

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-55  Score=427.11  Aligned_cols=263  Identities=25%  Similarity=0.346  Sum_probs=206.9

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|++++.||+|+||+||+|+++.     +++.||||++++..........++.+|+.+|+.++|||||++++++...+
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~   80 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLR-----LHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET   80 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc
Confidence            4679999999999999999999987     68899999997654444455677888999999999999999999997543


Q ss_pred             ----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          163 ----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       163 ----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                          .+|||||||+||+|.+++...  ..+++.++                            +.|+.||+.||+|||++
T Consensus        81 ~~~~~~~lvmE~~~g~~L~~~~~~~--~~l~~~~~----------------------------~~i~~qi~~al~~lH~~  130 (277)
T d1o6ya_          81 PAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRA----------------------------IEVIADACQALNFSHQN  130 (277)
T ss_dssp             SSSEEEEEEEECCCEEEHHHHHHHH--CSCCHHHH----------------------------HHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEECCCCCEehhhhccc--CCCCHHHH----------------------------HHHHHHHHHHHHHHHhC
Confidence                489999999999999888664  23333333                            47789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+|||++.++.++|+|||.++.......                                            
T Consensus       131 ~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~--------------------------------------------  166 (277)
T d1o6ya_         131 GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGN--------------------------------------------  166 (277)
T ss_dssp             TEECCCCSGGGEEEETTSCEEECCCTTCEECC------------------------------------------------
T ss_pred             CccCccccCcccccCccccceeehhhhhhhhccccc--------------------------------------------
Confidence            999999999999999999999999998743221000                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFK  398 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~  398 (517)
                                                     ........+||+.|||||++.+..|+.++|||||||++|||++|++||.
T Consensus       167 -------------------------------~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  215 (277)
T d1o6ya_         167 -------------------------------SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT  215 (277)
T ss_dssp             -------------------------------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             -------------------------------cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC
Confidence                                           0112345689999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFF  464 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f  464 (517)
                      +.+..+.+.++.......+......     .+.++.+||.+||++||.+||+..    +.+.|+|.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~l~~li~~~L~~dp~~R~~sa----~~l~~~l~  272 (277)
T d1o6ya_         216 GDSPVSVAYQHVREDPIPPSARHEG-----LSADLDAVVLKALAKNPENRYQTA----AEMRADLV  272 (277)
T ss_dssp             CSSHHHHHHHHHHCCCCCGGGTSSS-----CCHHHHHHHHHHTCSSGGGSCSSH----HHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCCCCchhccC-----CCHHHHHHHHHHccCCHhHCHhHH----HHHHHHHH
Confidence            9998888888887665544332222     123589999999999999999654    55556554

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-55  Score=425.45  Aligned_cols=262  Identities=23%  Similarity=0.322  Sum_probs=200.6

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++++.||+|+||+||+|+.++        .||||+++..... ....+.+.+|+.+|++++|||||+++++
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~~--------~vAvK~~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~~~   72 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG--------DVAVKMLNVTAPT-PQQLQAFKNEVGVLRKTRHVNILLFMGY   72 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESSS--------EEEEEECCCSSCC-TTHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEECC--------EEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCEeeeeEE
Confidence            356778999999999999999999997542        4999998643221 2345677889999999999999999998


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +. .+.+|||||||+||+|.+++.... ..+++..                            +..|+.||+.||+|||+
T Consensus        73 ~~-~~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qi~~gl~yLH~  122 (276)
T d1uwha_          73 ST-APQLAIVTQWCEGSSLYHHLHIIE-TKFEMIK----------------------------LIDIARQTAQGMDYLHA  122 (276)
T ss_dssp             EC-SSSCEEEEECCCEEEHHHHHHTSC-CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             Ee-ccEEEEEEecCCCCCHHHHHhhcc-CCCCHHH----------------------------HHHHHHHHHHHHHHHhc
Confidence            75 456899999999999999987643 2233222                            23788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+||||+.++.+||+|||+|+.......                                           
T Consensus       123 ~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~-------------------------------------------  159 (276)
T d1uwha_         123 KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG-------------------------------------------  159 (276)
T ss_dssp             TTCCCSCCCGGGEEEETTSSEEECCCCCSCC-------------------------------------------------
T ss_pred             CCEeccccCHHHEEEcCCCCEEEccccceeeccccCC-------------------------------------------
Confidence            9999999999999999999999999999854321000                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC---CCCccchHHHHHHHHHHHhhCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ---GHGSAVDWWTLGVFLYEMLYGT  394 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~---~~~~~~DiWSlGvil~elltG~  394 (517)
                                                       .....+..||+.|||||++.+.   .|+.++|||||||++|||+||+
T Consensus       160 ---------------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~  206 (276)
T d1uwha_         160 ---------------------------------SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ  206 (276)
T ss_dssp             ---------------------------------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------------------cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCC
Confidence                                             1122345799999999999753   4899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .||.+.+....+..+.......|......   ...+.++.+||.+||+.||++|||+.    |+++|
T Consensus       207 ~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~l~~li~~cl~~dp~~RPt~~----~il~~  266 (276)
T d1uwha_         207 LPYSNINNRDQIIFMVGRGYLSPDLSKVR---SNCPKAMKRLMAECLKKKRDERPLFP----QILAS  266 (276)
T ss_dssp             CTTTTCCCHHHHHHHHHHTSCCCCGGGSC---TTCCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCChHHHHHHHHhcCCCCCcchhcc---ccchHHHHHHHHHHcCCCHhHCcCHH----HHHHH
Confidence            99998877666555554333322211110   01223589999999999999999997    77765

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-56  Score=428.18  Aligned_cols=251  Identities=26%  Similarity=0.358  Sum_probs=201.6

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH---HHHhHHHHHHHHHHhcC--CCCccceeeee
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR---KKLHRADMEKVILTMLD--HPFLPTLYAEF  158 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~E~~il~~l~--HpnIv~l~~~~  158 (517)
                      ++|++.+.||+|+||+||+|+++.     +++.||||++.+......   ....++.+|+.+|++++  |||||+++++|
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~   78 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVS-----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF   78 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECC-----CCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEE
Confidence            689999999999999999999986     678999999976532211   11233556999999996  99999999999


Q ss_pred             ecCceeEEEEEecCC-CchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          159 EASHYSCLVMEYCPG-GDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       159 ~~~~~~~lV~E~~~g-g~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      .+.+.+|+||||+.+ ++|.+++...  ..+++.+                            ++.|+.||+.||+|||+
T Consensus        79 ~~~~~~~lv~e~~~~~~~l~~~~~~~--~~l~e~~----------------------------~~~~~~qi~~al~~lH~  128 (273)
T d1xwsa_          79 ERPDSFVLILERPEPVQDLFDFITER--GALQEEL----------------------------ARSFFWQVLEAVRHCHN  128 (273)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             eeCCeEEEEEEeccCcchHHHHHhcc--CCCCHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            999999999999976 5777777654  2333333                            34788999999999999


Q ss_pred             cCceeccCCCCceEEcc-CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVRE-DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~-~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +|||||||||+|||++. ++.+||+|||+|+....                                             
T Consensus       129 ~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~---------------------------------------------  163 (273)
T d1xwsa_         129 CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD---------------------------------------------  163 (273)
T ss_dssp             TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS---------------------------------------------
T ss_pred             CCCccccCcccceEEecCCCeEEECccccceeccc---------------------------------------------
Confidence            99999999999999985 47999999999843211                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCC-CccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGH-GSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~DiWSlGvil~elltG~~  395 (517)
                                                         ....+.+||+.|+|||++.+..+ +.++|||||||++|||++|+.
T Consensus       164 -----------------------------------~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~  208 (273)
T d1xwsa_         164 -----------------------------------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI  208 (273)
T ss_dssp             -----------------------------------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCC
Confidence                                               11234579999999999987765 678999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGIN  468 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~  468 (517)
                      ||.+.+      .+......++...         +.++++||.+||+.||++|||+.    |+|+||||+++.
T Consensus       209 Pf~~~~------~i~~~~~~~~~~~---------s~~~~~li~~~L~~dp~~R~s~~----eil~hp~~~~~~  262 (273)
T d1xwsa_         209 PFEHDE------EIIRGQVFFRQRV---------SSECQHLIRWCLALRPSDRPTFE----EIQNHPWMQDVL  262 (273)
T ss_dssp             SCCSHH------HHHHCCCCCSSCC---------CHHHHHHHHHHTCSSGGGSCCHH----HHHTSGGGSSCC
T ss_pred             CCCCch------HHhhcccCCCCCC---------CHHHHHHHHHHccCCHhHCcCHH----HHhcCHhhCCCC
Confidence            997632      3445544444321         23589999999999999999998    999999998764

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-55  Score=424.66  Aligned_cols=261  Identities=20%  Similarity=0.299  Sum_probs=206.8

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      .+++..++|++++.||+|+||+||+|++++      ++.||||+++....    ..+.+.+|+.+|++++|||||+++++
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~------~~~vAvK~~~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~   76 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYNG------HTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAV   76 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETT------TEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEECC------CCEEEEEEEccCcC----CHHHHHHHHHHHHhCCCCCEeEEEee
Confidence            456777899999999999999999999763      56899999976532    23457789999999999999999998


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+ +.+|+|||||++|+|.+++.......++..                            .+..|+.||+.||+|||+
T Consensus        77 ~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~----------------------------~~~~i~~qi~~gl~~lH~  127 (272)
T d1qpca_          77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTIN----------------------------KLLDMAAQIAEGMAFIEE  127 (272)
T ss_dssp             ECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             ecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHH----------------------------HHHHHHHHHHHHHHHHHh
Confidence            765 567999999999999987654322222222                            234789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+||||+.++.+||+|||+|+.+....                                            
T Consensus       128 ~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~--------------------------------------------  163 (272)
T d1qpca_         128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE--------------------------------------------  163 (272)
T ss_dssp             TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC--------------------------------------------
T ss_pred             CCcccCccchhheeeecccceeeccccceEEccCCc--------------------------------------------
Confidence            999999999999999999999999999995433111                                            


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~P  396 (517)
                                                       ........||+.|||||++.+..++.++|||||||++|||+|| .+|
T Consensus       164 ---------------------------------~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~  210 (272)
T d1qpca_         164 ---------------------------------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP  210 (272)
T ss_dssp             ---------------------------------EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------------------------cccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCC
Confidence                                             0112334699999999999988899999999999999999995 566


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc--CCCcCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR--HEFFKG  466 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~--hp~f~~  466 (517)
                      |...+..+.+..+..+......  ...      +.++.+||.+||+.||++|||+.    |+++  |+||.+
T Consensus       211 ~~~~~~~~~~~~i~~~~~~~~p--~~~------~~~l~~li~~cl~~~P~~Rpt~~----ei~~~L~~~fts  270 (272)
T d1qpca_         211 YPGMTNPEVIQNLERGYRMVRP--DNC------PEELYQLMRLCWKERPEDRPTFD----YLRSVLEDFFTA  270 (272)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCC--TTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCc--ccC------hHHHHHHHHHHcCCCHhHCcCHH----HHHHHhhhhhhc
Confidence            7777777777777665322211  111      22589999999999999999997    8876  778753

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-54  Score=423.40  Aligned_cols=260  Identities=21%  Similarity=0.263  Sum_probs=198.0

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      ..+..++|++.++||+|+||+||+|+++.+..  ....||||.+.....  ....+.+.+|+.+|++++|||||++++++
T Consensus        21 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~--~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~g~~   96 (299)
T d1jpaa_          21 KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGK--REIFVAIKTLKSGYT--EKQRRDFLSEASIMGQFDHPNVIHLEGVV   96 (299)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECC-----CCEEEEEEECCSSCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhhChhhcEEeeEEeeCCCeEEEEEEEeCCCC--EEEEEEEEEECcccC--HHHHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence            45667899999999999999999999875321  234689998865422  23345678899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      ..++.+|+|||||+||+|.+++.... ..+++..                            +..|+.||+.||+|||++
T Consensus        97 ~~~~~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~----------------------------~~~i~~qia~gl~yLH~~  147 (299)
T d1jpaa_          97 TKSTPVMIITEFMENGSLDSFLRQND-GQFTVIQ----------------------------LVGMLRGIAAGMKYLADM  147 (299)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHTTT-TCSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             eeCCEEEEEEEecCCCcceeeecccc-CCCCHHH----------------------------HHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999877642 2233322                            236789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+||||+.++.+||+|||+|+.+......                                           
T Consensus       148 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~-------------------------------------------  184 (299)
T d1jpaa_         148 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD-------------------------------------------  184 (299)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCC-------------------------------------------------------
T ss_pred             CCccCccccceEEECCCCcEEECCcccceEccCCCCc-------------------------------------------
Confidence            9999999999999999999999999998654321100                                           


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                    ..........||+.|||||++.+..|+.++|||||||++|||+| |+.||
T Consensus       185 ------------------------------~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf  234 (299)
T d1jpaa_         185 ------------------------------PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY  234 (299)
T ss_dssp             -----------------------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ------------------------------ceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCC
Confidence                                          00011123468999999999999999999999999999999998 89999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+.+..+.+..+..+....+..  .      .+.++.+||.+||+.||++|||+.
T Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~--~------~~~~l~~li~~cl~~~P~~RPs~~  281 (299)
T d1jpaa_         235 WDMTNQDVINAIEQDYRLPPPM--D------CPSALHQLMLDCWQKDRNHRPKFG  281 (299)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCCT--T------CCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCc--c------chHHHHHHHHHHcCCCHhHCcCHH
Confidence            9999888888877654322111  1      223589999999999999999987

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=6.1e-55  Score=425.32  Aligned_cols=265  Identities=24%  Similarity=0.327  Sum_probs=204.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|+++++||+|+||+||+|+++      +++.||||++..... ......++.+|+.+|++++|||||+++++|.+++
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~------~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~   73 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN------YGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET------TSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             CCCceeccEEecCCCcEEEEEEeC------CCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC
Confidence            478999999999999999999885      458899999976532 1233567888999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..|++|||+.++.+..+....  ..+++..+                            +.|+.||+.||+|||++||||
T Consensus        74 ~~~i~~e~~~~~~~~~~~~~~--~~l~~~~~----------------------------~~i~~qi~~~L~~LH~~~IvH  123 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDVCE--GGLESVTA----------------------------KSFLLQLLNGIAYCHDRRVLH  123 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHTST--TCCCHHHH----------------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             ceeEEEEeehhhhHHHHHhhc--CCcchhhh----------------------------HHHHHHHHHHHHHhccCcEEe
Confidence            999999999776665554432  33433333                            478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||+|......                                                  
T Consensus       124 rDiKp~NIll~~~~~~kl~DfG~a~~~~~~--------------------------------------------------  153 (286)
T d1ob3a_         124 RDLKPQNLLINREGELKIADFGLARAFGIP--------------------------------------------------  153 (286)
T ss_dssp             SCCCGGGEEECTTSCEEECCTTHHHHHCC---------------------------------------------------
T ss_pred             cCCCCceeeEcCCCCEEecccccceecccC--------------------------------------------------
Confidence            999999999999999999999998432210                                                  


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~~~~  401 (517)
                                                  ........|++.|+|||.+.+.. ++.++|||||||++|||++|++||.+.+
T Consensus       154 ----------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~  205 (286)
T d1ob3a_         154 ----------------------------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS  205 (286)
T ss_dssp             ------------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ----------------------------ccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCC
Confidence                                        01123346899999999998654 6999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCC---------------c---hh--HHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPLTFPRIGVSS---------------S---KE--FEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~~~p~~~~~~---------------~---~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..+.+.++.......+......               .   ..  .....++.|||.+||+.||++|||+.    |+|+|
T Consensus       206 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~----ell~H  281 (286)
T d1ob3a_         206 EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAK----QALEH  281 (286)
T ss_dssp             HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHH----HHHTS
T ss_pred             HHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHH----HHhcC
Confidence            8877776653111100000000               0   00  01123589999999999999999998    99999


Q ss_pred             CCcCC
Q 010140          462 EFFKG  466 (517)
Q Consensus       462 p~f~~  466 (517)
                      |||+.
T Consensus       282 p~f~~  286 (286)
T d1ob3a_         282 AYFKE  286 (286)
T ss_dssp             GGGGC
T ss_pred             cccCc
Confidence            99974

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-54  Score=421.57  Aligned_cols=266  Identities=23%  Similarity=0.256  Sum_probs=208.4

Q ss_pred             cCCCCceEEee-eeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           81 VGLDHFRLLRR-LGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        81 ~~~~~y~i~~~-LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      +..++|.+.+. ||+|+||+||+|.++...   .+..||||+++....  ....+++.+|+.+|++++|||||++++++.
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~---~~~~vAvK~l~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~g~~~   79 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRK---KQIDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVCQ   79 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC------CCEEEEEEEECSSCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCC---CcEEEEEEEEChhcC--HHHHHHHHHHHHHHHhCCCCCEeeEeeeec
Confidence            44567889885 999999999999876521   345799999875422  234567888999999999999999999987


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      + +.+|||||||+||+|.+++.... ..+++..                            +..|+.||+.||+|||++|
T Consensus        80 ~-~~~~lvmE~~~~g~L~~~l~~~~-~~l~~~~----------------------------~~~i~~qi~~gL~ylH~~~  129 (285)
T d1u59a_          80 A-EALMLVMEMAGGGPLHKFLVGKR-EEIPVSN----------------------------VAELLHQVSMGMKYLEEKN  129 (285)
T ss_dssp             S-SSEEEEEECCTTEEHHHHHTTCT-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             c-CeEEEEEEeCCCCcHHHHhhccc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHhCC
Confidence            5 46899999999999999875432 2233322                            2378899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+||||+.++.+||+|||+|+.+......                                            
T Consensus       130 iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~--------------------------------------------  165 (285)
T d1u59a_         130 FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY--------------------------------------------  165 (285)
T ss_dssp             EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCE--------------------------------------------
T ss_pred             eecCcCchhheeeccCCceeeccchhhhcccccccc--------------------------------------------
Confidence            999999999999999999999999999654321100                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~  398 (517)
                                                     ........||+.|||||++.+..++.++|||||||++|||+| |+.||.
T Consensus       166 -------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~  214 (285)
T d1u59a_         166 -------------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK  214 (285)
T ss_dssp             -------------------------------ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             -------------------------------cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCC
Confidence                                           111234468999999999998889999999999999999998 999999


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      +.+..+++..+..+.....+  ...      +.++.+||.+||+.||++||++. .+.+.|+|+|+.
T Consensus       215 ~~~~~~~~~~i~~~~~~~~p--~~~------~~~l~~li~~cl~~~p~~RPs~~-~i~~~L~~~~~~  272 (285)
T d1u59a_         215 KMKGPEVMAFIEQGKRMECP--PEC------PPELYALMSDCWIYKWEDRPDFL-TVEQRMRACYYS  272 (285)
T ss_dssp             TCCTHHHHHHHHTTCCCCCC--TTC------CHHHHHHHHHTTCSSGGGSCCHH-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCC--CcC------CHHHHHHHHHHcCCCHhHCcCHH-HHHHHHHHHHHH
Confidence            98888888888765432111  111      23589999999999999999985 344557888874

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-54  Score=415.38  Aligned_cols=252  Identities=22%  Similarity=0.289  Sum_probs=197.2

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|++++.||+|+||+||+|++++      ++.||||+++....    ..+.+.+|+.+|++++|||||++++++..+
T Consensus         3 dp~~~~~~~~iG~G~fg~Vy~~~~~~------~~~vAvK~i~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~   72 (263)
T d1sm2a_           3 DPSELTFVQEIGSGQFGLVHLGYWLN------KDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ   72 (263)
T ss_dssp             CCSCEEEEEEEECCSSCCEEEEEETT------TEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ChHHcEEEEEEeeCCCeEEEEEEECC------CCEEEEEEECCCcC----cHHHHHHHHHHHHhcCCCCcccccceeccC
Confidence            45789999999999999999999864      46799999976432    234577899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+|||||++|+|.+++.... ..+....                            ...|+.||+.||+|||+++|+
T Consensus        73 ~~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~----------------------------~~~i~~qia~gl~~lH~~~ii  123 (263)
T d1sm2a_          73 APICLVFEFMEHGCLSDYLRTQR-GLFAAET----------------------------LLGMCLDVCEGMAYLEEACVI  123 (263)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             CceEEEEEecCCCcHHHHhhccc-cCCCHHH----------------------------HHHHHHHHHHHHHhhhcccee
Confidence            99999999999999999886542 2222221                            236889999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.+....                                                
T Consensus       124 HrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~------------------------------------------------  155 (263)
T d1sm2a_         124 HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ------------------------------------------------  155 (263)
T ss_dssp             CTTCSGGGEEECGGGCEEECSCC---------------------------------------------------------
T ss_pred             ecccchhheeecCCCCeEecccchheeccCCC------------------------------------------------
Confidence            99999999999999999999999985432110                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........||+.|+|||++.+..|+.++|||||||++|||++ |.+||...
T Consensus       156 -----------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~  206 (263)
T d1sm2a_         156 -----------------------------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  206 (263)
T ss_dssp             --------------------------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC
T ss_pred             -----------------------------ceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC
Confidence                                         001123468999999999999999999999999999999999 57778777


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +..+.+..+..+.....+.  .      .+.++.+||.+||+.||++|||+.    |+++|
T Consensus       207 ~~~~~~~~i~~~~~~~~p~--~------~~~~l~~li~~cl~~~p~~Rps~~----~il~~  255 (263)
T d1sm2a_         207 SNSEVVEDISTGFRLYKPR--L------ASTHVYQIMNHCWKERPEDRPAFS----RLLRQ  255 (263)
T ss_dssp             CHHHHHHHHHHTCCCCCCT--T------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CHHHHHHHHHhcCCCCCcc--c------cCHHHHHHHHHHccCCHhHCcCHH----HHHHH
Confidence            7777777777653322111  1      122589999999999999999997    77765

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-55  Score=421.06  Aligned_cols=258  Identities=22%  Similarity=0.259  Sum_probs=200.4

Q ss_pred             eeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCceeEEEEE
Q 010140           90 RRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASHYSCLVME  169 (517)
Q Consensus        90 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E  169 (517)
                      ++||+|+||+||+|.++..   .+++.||||+++.... .....+++.+|+.+|++++|||||+++++++++ ..|||||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~---~~~~~vAvK~~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE   87 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMK---KVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVME   87 (277)
T ss_dssp             EEEEECSSEEEEEEEEECS---SSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEE
T ss_pred             CCcccCCCeEEEEEEEccC---CcCeEEEEEEEChhhC-CHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEE
Confidence            4799999999999987652   1457899999976532 233456788899999999999999999999754 5789999


Q ss_pred             ecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCCCCc
Q 010140          170 YCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLKPEN  249 (517)
Q Consensus       170 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLKp~N  249 (517)
                      ||++|+|.+++...  ..+++..                            +..|+.||+.||+|||++|||||||||+|
T Consensus        88 ~~~~g~L~~~l~~~--~~l~~~~----------------------------~~~i~~qi~~gl~ylH~~~iiHrDlKp~N  137 (277)
T d1xbba_          88 MAELGPLNKYLQQN--RHVKDKN----------------------------IIELVHQVSMGMKYLEESNFVHRDLAARN  137 (277)
T ss_dssp             CCTTEEHHHHHHHC--TTCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEECSCCSGGG
T ss_pred             cCCCCcHHHHHhhc--cCCCHHH----------------------------HHHHHHHHHHHHhhHHhCCcccCCCcchh
Confidence            99999999998764  2233322                            23788999999999999999999999999


Q ss_pred             eEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccccccccccc
Q 010140          250 VLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTIREQ  329 (517)
Q Consensus       250 ILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (517)
                      ||++.++.+||+|||+|+.+......                                                      
T Consensus       138 ill~~~~~~kl~DFGla~~~~~~~~~------------------------------------------------------  163 (277)
T d1xbba_         138 VLLVTQHYAKISDFGLSKALRADENY------------------------------------------------------  163 (277)
T ss_dssp             EEEEETTEEEECCCTTCEECCTTCSE------------------------------------------------------
T ss_pred             hcccccCcccccchhhhhhccccccc------------------------------------------------------
Confidence            99999999999999998543311100                                                      


Q ss_pred             cCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCChHHHHHH
Q 010140          330 VDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGENNEKTLIN  408 (517)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~~~~~~~~  408 (517)
                                           ........||+.|||||++.+..++.++|||||||++|||++ |++||.+.+..+....
T Consensus       164 ---------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~  222 (277)
T d1xbba_         164 ---------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAM  222 (277)
T ss_dssp             ---------------------EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHH
T ss_pred             ---------------------cccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHH
Confidence                                 011223468999999999999889999999999999999997 8999999988888777


Q ss_pred             HhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCC
Q 010140          409 ILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGI  467 (517)
Q Consensus       409 i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~  467 (517)
                      +..+.. ..|.   ..      +.++.+||.+||+.||++|||+. .+.+.|+|+|++.+
T Consensus       223 i~~~~~~~~p~---~~------~~~~~~li~~cl~~dp~~RPs~~-~i~~~L~~~~~~~~  272 (277)
T d1xbba_         223 LEKGERMGCPA---GC------PREMYDLMNLCWTYDVENRPGFA-AVELRLRNYYYDVV  272 (277)
T ss_dssp             HHTTCCCCCCT---TC------CHHHHHHHHHHTCSSTTTSCCHH-HHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCc---cc------CHHHHHHHHHHcCCCHhHCcCHH-HHHHHhhCHHhhcC
Confidence            776532 2221   11      23589999999999999999986 22334678776543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-54  Score=410.59  Aligned_cols=252  Identities=22%  Similarity=0.271  Sum_probs=206.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS  161 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~  161 (517)
                      ..++|+++++||+|+||+||+|+++      +++.||||++++...    ..+.+.+|+.++++++|||||++++++.++
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~~------~~~~vAvK~l~~~~~----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~   71 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKWR------GQYDVAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ   71 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEET------TTEEEEEEEEESSSS----CHHHHHHHHHHHHTCCCTTBCCEEEEECCS
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEEC------CCCEEEEEEECcCcC----CHHHHHHHHHHHHhcCCCceeeEEEEEeeC
Confidence            3578999999999999999999986      357899999976532    234577899999999999999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      +.+|+||||+++|+|..++.... ..+..                            .....|+.||+.||+|||++||+
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~~~~~-~~~~~----------------------------~~~~~i~~qi~~gl~~LH~~~ii  122 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYLREMR-HRFQT----------------------------QQLLEMCKDVCEAMEYLESKQFL  122 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHHHSGG-GCCCH----------------------------HHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CceEEEEEccCCCcHHHhhhccc-cCCcH----------------------------HHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999998865532 11211                            12247889999999999999999


Q ss_pred             eccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccccc
Q 010140          242 YRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAV  321 (517)
Q Consensus       242 HrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                      ||||||+|||++.++.+||+|||+++.+....                                                
T Consensus       123 H~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~------------------------------------------------  154 (258)
T d1k2pa_         123 HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE------------------------------------------------  154 (258)
T ss_dssp             CSCCSGGGEEECTTCCEEECCCSSCCBCSSSS------------------------------------------------
T ss_pred             cccccceeEEEcCCCcEEECcchhheeccCCC------------------------------------------------
Confidence            99999999999999999999999985433110                                                


Q ss_pred             cccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCC
Q 010140          322 TVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGE  400 (517)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~  400 (517)
                                                   ........||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.
T Consensus       155 -----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~  205 (258)
T d1k2pa_         155 -----------------------------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF  205 (258)
T ss_dssp             -----------------------------CCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             -----------------------------ceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC
Confidence                                         011223469999999999999999999999999999999998 89999999


Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          401 NNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      +..++..++..+.....+.  ..+      .++.+||.+||+.||++|||+.    |+++|
T Consensus       206 ~~~~~~~~i~~~~~~~~p~--~~~------~~l~~li~~cl~~dP~~RPt~~----eil~~  254 (258)
T d1k2pa_         206 TNSETAEHIAQGLRLYRPH--LAS------EKVYTIMYSCWHEKADERPTFK----ILLSN  254 (258)
T ss_dssp             CHHHHHHHHHTTCCCCCCT--TCC------HHHHHHHHHTTCSSGGGSCCHH----HHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcc--ccc------HHHHHHHHHHccCCHhHCcCHH----HHHHH
Confidence            9988888887754322221  111      2589999999999999999997    88876

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-53  Score=424.58  Aligned_cols=265  Identities=29%  Similarity=0.388  Sum_probs=202.4

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||++++... .....+++.+|+.+|+.++|||||+++++|...+
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~-----~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~   90 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGR-----TGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDE   90 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETT-----TCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCS
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEEchhhc-ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCc
Confidence            4789999999999999999999986     688999999975432 2344567788999999999999999999997654


Q ss_pred             ------eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          163 ------YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       163 ------~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                            ++||||||| |++|..++...   .+++..                            ++.++.||+.||+|||
T Consensus        91 ~~~~~~~~~lv~e~~-~~~l~~~~~~~---~l~~~~----------------------------~~~~~~qi~~aL~~LH  138 (346)
T d1cm8a_          91 TLDDFTDFYLVMPFM-GTDLGKLMKHE---KLGEDR----------------------------IQFLVYQMLKGLRYIH  138 (346)
T ss_dssp             STTTCCCCEEEEECC-SEEHHHHHHHC---CCCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEEecc-cccHHHHHHhc---cccHHH----------------------------HHHHHHHHHHHHHHHH
Confidence                  579999999 77887776542   333333                            3478899999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++|||||||||+|||++.++.+||+|||+|+...                                              
T Consensus       139 ~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~----------------------------------------------  172 (346)
T d1cm8a_         139 AAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD----------------------------------------------  172 (346)
T ss_dssp             HTTEECCCCCGGGEEECTTCCEEECCCTTCEECC----------------------------------------------
T ss_pred             hCCCcccccCcchhhcccccccccccccceeccC----------------------------------------------
Confidence            9999999999999999999999999999984322                                              


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                         ......+||+.|+|||++.+. .++.++|||||||++|+|++|++
T Consensus       173 -----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~  217 (346)
T d1cm8a_         173 -----------------------------------SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT  217 (346)
T ss_dssp             -----------------------------------SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcC
Confidence                                               112345799999999999875 46899999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCCCCC--------------------CCCCCCchh--HHhhhhHHHHHHHhccCCcccccCCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFP--------------------RIGVSSSKE--FEEVVKLQDLISKLLVKNPKKRIGSLK  453 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p--------------------~~~~~~~~~--~~~~~~l~dLi~~~L~~dP~~R~t~~~  453 (517)
                      ||.+.+....+..+.......+                    .........  .....++.|||.+||+.||.+|||+. 
T Consensus       218 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~-  296 (346)
T d1cm8a_         218 LFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG-  296 (346)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH-
T ss_pred             CCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHH-
Confidence            9999887766655543211111                    000000000  01223589999999999999999998 


Q ss_pred             ChHHhhcCCCcCCCCcc
Q 010140          454 GSVEIKRHEFFKGINWA  470 (517)
Q Consensus       454 ~~~ell~hp~f~~~~~~  470 (517)
                         |+|+||||+++.+.
T Consensus       297 ---eiL~Hp~f~~~~~~  310 (346)
T d1cm8a_         297 ---EALAHPYFESLHDT  310 (346)
T ss_dssp             ---HHHHSGGGTTTC--
T ss_pred             ---HHhcChhhCcCCCc
Confidence               99999999987653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=422.06  Aligned_cols=270  Identities=26%  Similarity=0.320  Sum_probs=203.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec--
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA--  160 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--  160 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||++...... .....++.+|+.+|++++||||+++++++..  
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~   82 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRK-----TGQKVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKA   82 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEC----CT-TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEEehhhcc-hHHHHHHHHHHHHHHHhcCCCccceEeeeeccc
Confidence            5789999999999999999999986     6889999998765322 2344567789999999999999999998854  


Q ss_pred             ------CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHH
Q 010140          161 ------SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEY  234 (517)
Q Consensus       161 ------~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  234 (517)
                            .+++|+|||||.++.+......  ...+++..                            ++.++.||+.||.|
T Consensus        83 ~~~~~~~~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~----------------------------~~~i~~qil~~l~~  132 (318)
T d3blha1          83 SPYNRCKGSIYLVFDFCEHDLAGLLSNV--LVKFTLSE----------------------------IKRVMQMLLNGLYY  132 (318)
T ss_dssp             --------CEEEEEECCCEEHHHHHTCT--TCCCCHHH----------------------------HHHHHHHHHHHHHH
T ss_pred             ccccccCceEEEEEeccCCCccchhhhc--ccccccHH----------------------------HHHHHHHHHHHHHH
Confidence                  4568999999977665433222  23333332                            24778999999999


Q ss_pred             HHhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccc
Q 010140          235 LHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGK  314 (517)
Q Consensus       235 LH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                      ||++||+||||||+|||++.++.+||+|||+++.+......                                       
T Consensus       133 lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~---------------------------------------  173 (318)
T d3blha1         133 IHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS---------------------------------------  173 (318)
T ss_dssp             HHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-------------------------------------------
T ss_pred             hccCCEEecCcCchheeecCCCcEEeeecceeeeccccccc---------------------------------------
Confidence            99999999999999999999999999999998543311100                                       


Q ss_pred             ccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhC
Q 010140          315 KNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYG  393 (517)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG  393 (517)
                                                         ......+.+||+.|+|||++.+. .|+.++|||||||++|||++|
T Consensus       174 -----------------------------------~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g  218 (318)
T d3blha1         174 -----------------------------------QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTR  218 (318)
T ss_dssp             ------------------------------------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             -----------------------------------ccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhC
Confidence                                               01122345799999999999876 589999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHhcCCCCCCCCCCCC-------------------c----hhHHhhhhHHHHHHHhccCCcccccC
Q 010140          394 TTPFKGENNEKTLINILKKPLTFPRIGVSS-------------------S----KEFEEVVKLQDLISKLLVKNPKKRIG  450 (517)
Q Consensus       394 ~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~-------------------~----~~~~~~~~l~dLi~~~L~~dP~~R~t  450 (517)
                      ++||.+.++......+......++......                   .    .......++.|||.+||+.||++|||
T Consensus       219 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~s  298 (318)
T d3blha1         219 SPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID  298 (318)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCC
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcC
Confidence            999999888777666543211111110000                   0    00112346789999999999999999


Q ss_pred             CCCChHHhhcCCCcCC
Q 010140          451 SLKGSVEIKRHEFFKG  466 (517)
Q Consensus       451 ~~~~~~ell~hp~f~~  466 (517)
                      +.    |+|+||||+.
T Consensus       299 a~----elL~Hpff~~  310 (318)
T d3blha1         299 SD----DALNHDFFWS  310 (318)
T ss_dssp             HH----HHHHSGGGSS
T ss_pred             HH----HHHcChhhcc
Confidence            98    9999999974

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=4.2e-53  Score=420.46  Aligned_cols=262  Identities=25%  Similarity=0.363  Sum_probs=201.7

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeec
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEA  160 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~  160 (517)
                      ..++|+++++||+|+||+||+|+++.     +++.||||++++..      ..++.+|+.+|+.+. ||||++++++|..
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~-----~~~~vAiK~i~~~~------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~  101 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINIT-----NNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKD  101 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSSC------HHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECC-----CCCEEEEEEECHHH------HHHHHHHHHHHHhccCCCCCcEEEEEEEe
Confidence            34789999999999999999999886     78999999997542      245667999999995 9999999999974


Q ss_pred             --CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                        ...+|+|||||.+|+|..+.     +.+++.                            .++.+++||+.||+|||++
T Consensus       102 ~~~~~~~~v~e~~~~~~L~~~~-----~~l~e~----------------------------~i~~i~~qil~aL~~LH~~  148 (328)
T d3bqca1         102 PVSRTPALVFEHVNNTDFKQLY-----QTLTDY----------------------------DIRFYMYEILKALDYCHSM  148 (328)
T ss_dssp             TTTCSEEEEEECCCSCBGGGTT-----TSCCHH----------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCceeEEEeecCCCcHHHHh-----cCCCHH----------------------------HHHHHHHHHHHHHHHHhhc
Confidence              46799999999999997643     223332                            3357899999999999999


Q ss_pred             CceeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      |||||||||+||||+.++ .+||+|||+|+.....                                             
T Consensus       149 gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~---------------------------------------------  183 (328)
T d3bqca1         149 GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG---------------------------------------------  183 (328)
T ss_dssp             TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT---------------------------------------------
T ss_pred             ccccccccccceEEcCCCCeeeecccccceeccCC---------------------------------------------
Confidence            999999999999998655 6999999998543210                                             


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ......+||+.|+|||++.+.. ++.++||||+||++|||++|..|
T Consensus       184 ----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~p  229 (328)
T d3bqca1         184 ----------------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEP  229 (328)
T ss_dssp             ----------------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSS
T ss_pred             ----------------------------------CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCC
Confidence                                              1123457999999999998765 79999999999999999999999


Q ss_pred             CCCCChH-HHHHHHhc-------------CCCCC-----------CCC----CCCCchhHHhhhhHHHHHHHhccCCccc
Q 010140          397 FKGENNE-KTLINILK-------------KPLTF-----------PRI----GVSSSKEFEEVVKLQDLISKLLVKNPKK  447 (517)
Q Consensus       397 f~~~~~~-~~~~~i~~-------------~~~~~-----------p~~----~~~~~~~~~~~~~l~dLi~~~L~~dP~~  447 (517)
                      |...... .....+..             .....           +..    ............++.|||.+||++||++
T Consensus       230 f~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~  309 (328)
T d3bqca1         230 FFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQS  309 (328)
T ss_dssp             SSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGG
T ss_pred             CCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhH
Confidence            9765432 22222211             00000           000    0000011123346899999999999999


Q ss_pred             ccCCCCChHHhhcCCCcCCCCcc
Q 010140          448 RIGSLKGSVEIKRHEFFKGINWA  470 (517)
Q Consensus       448 R~t~~~~~~ell~hp~f~~~~~~  470 (517)
                      |||++    |+|+||||+++.|+
T Consensus       310 R~ta~----e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         310 RLTAR----EAMEHPYFYTVVKD  328 (328)
T ss_dssp             SCCHH----HHHTSGGGTTSCCC
T ss_pred             CcCHH----HHhcCcccCCCCCC
Confidence            99998    99999999999985

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-53  Score=412.62  Aligned_cols=263  Identities=22%  Similarity=0.287  Sum_probs=204.5

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ..+++..++|++++.||+|+||+||+|++++      ++.||||+++....    ..+.+.+|+.+|++++|||||++++
T Consensus        10 ~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~------~~~vAiK~l~~~~~----~~~~~~~E~~~l~~l~h~nIv~~~g   79 (285)
T d1fmka3          10 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNG------TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYA   79 (285)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEETT------TEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cceEcCHHHEEEeeEEeeCCCeEEEEEEECC------CCEEEEEEECcccC----CHHHHHHHHHHHHhcccCCEeEEEE
Confidence            3466778999999999999999999999875      35699999976532    2346778999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++.+ +.+|+|||||++|+|..++.......+++.+                            +..|+.||+.||+|||
T Consensus        80 ~~~~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~----------------------------~~~i~~~i~~gl~~LH  130 (285)
T d1fmka3          80 VVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQ----------------------------LVDMAAQIASGMAYVE  130 (285)
T ss_dssp             EECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             EEec-CCeEEEEEecCCCchhhhhhhcccccchHHH----------------------------HHHHHHHHHHHHHHHh
Confidence            9865 5689999999999999887654222333322                            2478999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+||||+.++.+||+|||+|+......                                           
T Consensus       131 ~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~-------------------------------------------  167 (285)
T d1fmka3         131 RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-------------------------------------------  167 (285)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------------------------------------------
T ss_pred             hhheecccccceEEEECCCCcEEEcccchhhhccCCC-------------------------------------------
Confidence            9999999999999999999999999999985432100                                           


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~  395 (517)
                                                        ........||+.|+|||++.+..++.++|||||||++|||++| .+
T Consensus       168 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p  213 (285)
T d1fmka3         168 ----------------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV  213 (285)
T ss_dssp             ------------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ----------------------------------ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCC
Confidence                                              0111234689999999999999999999999999999999995 55


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc--CCCcCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR--HEFFKGI  467 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~--hp~f~~~  467 (517)
                      ||.+....+.+..+..+.. .+. ...      .+.++++||.+||+.||++||++.    ++++  |+||...
T Consensus       214 ~~~~~~~~~~~~~i~~~~~-~~~-~~~------~~~~l~~li~~cl~~dP~~Rps~~----~i~~~L~~~~~~~  275 (285)
T d1fmka3         214 PYPGMVNREVLDQVERGYR-MPC-PPE------CPESLHDLMCQCWRKEPEERPTFE----YLQAFLEDYFTST  275 (285)
T ss_dssp             SSTTCCHHHHHHHHHTTCC-CCC-CTT------SCHHHHHHHHHHTCSSGGGSCCHH----HHHHHHHTTTSCS
T ss_pred             CCCCCCHHHHHHHHHhcCC-CCC-Ccc------cCHHHHHHHHHHcccCHhHCcCHH----HHHHHHhhhhcCC
Confidence            5666666777777665432 221 111      123589999999999999999997    7776  7888753

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-53  Score=414.89  Aligned_cols=280  Identities=19%  Similarity=0.221  Sum_probs=201.6

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +++..++|+++++||+|+||.||+|++.......+++.||||+++.....  ...+.+.+|..++.++ +|+|||.++++
T Consensus         8 wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~--~~~~~~~~e~~~l~~~~~h~~iv~~~~~   85 (299)
T d1ywna1           8 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--SEHRALMSELKILIHIGHHLNVVNLLGA   85 (299)
T ss_dssp             HBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CH--HHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCc--HHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence            45667899999999999999999999987555556789999999754322  3345566677777776 79999999998


Q ss_pred             eec-CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          158 FEA-SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       158 ~~~-~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      +.. +..+|+|||||++|+|.+++........+.....              ............++.|+.||+.||+|||
T Consensus        86 ~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~qi~~gl~ylH  151 (299)
T d1ywna1          86 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAP--------------EDLYKDFLTLEHLICYSFQVAKGMEFLA  151 (299)
T ss_dssp             ECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-------------------------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCeEEEEEEecCCCcHHHHHHhccccccccccch--------------hhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            754 5578999999999999999976532211110000              0011122334455689999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++|||||||||+||||+.++.+||+|||+|+.......                                          
T Consensus       152 ~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~------------------------------------------  189 (299)
T d1ywna1         152 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD------------------------------------------  189 (299)
T ss_dssp             HTTCCCSCCCGGGEEECGGGCEEECC------CCSCTT------------------------------------------
T ss_pred             hCCCcCCcCCccceeECCCCcEEEccCcchhhcccccc------------------------------------------
Confidence            99999999999999999999999999999854331110                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~  395 (517)
                                                        .......+||+.|||||++.+..++.++|||||||++|||++| .+
T Consensus       190 ----------------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~  235 (299)
T d1ywna1         190 ----------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS  235 (299)
T ss_dssp             ----------------------------------SCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------------------------ccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCC
Confidence                                              1122345799999999999999999999999999999999986 57


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ||.+....+.+..++......+.. ...      +.++.+||.+||+.||++|||+.    |+++|
T Consensus       236 p~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~l~~li~~cl~~dP~~Rpt~~----eil~~  290 (299)
T d1ywna1         236 PYPGVKIDEEFCRRLKEGTRMRAP-DYT------TPEMYQTMLDCWHGEPSQRPTFS----ELVEH  290 (299)
T ss_dssp             SSTTCCCSHHHHHHHHHTCCCCCC-TTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCC-ccC------CHHHHHHHHHHcCCChhHCcCHH----HHHHH
Confidence            888876655555544433222211 111      22589999999999999999997    88876

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-53  Score=409.11  Aligned_cols=260  Identities=25%  Similarity=0.326  Sum_probs=199.5

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +++..++|++++.||+|+||+||+|++.....  ....||||+++....  ......+.+|+.+|++++|||||++++++
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~--~~~~vaik~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~~~~   77 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPEN--PALAVAIKTCKNCTS--DSVREKFLQEALTMRQFDHPHIVKLIGVI   77 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC----CCEEEEEEECTTTTS--HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCc--eeEEEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            45667899999999999999999999875321  345789999864322  23446678899999999999999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      . .+.+|+|||||++|+|.+++.... ..+++..                            ++.++.||+.||+|||++
T Consensus        78 ~-~~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~----------------------------~~~~~~qi~~gl~ylH~~  127 (273)
T d1mp8a_          78 T-ENPVWIIMELCTLGELRSFLQVRK-YSLDLAS----------------------------LILYAYQLSTALAYLESK  127 (273)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             e-cCeEEEEEEeccCCcHHhhhhccC-CCCCHHH----------------------------HHHHHHHHHHHhhhhccc
Confidence            6 467899999999999998876542 2232222                            237789999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+|||++.++.+||+|||+|+.+....                                             
T Consensus       128 ~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~---------------------------------------------  162 (273)
T d1mp8a_         128 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST---------------------------------------------  162 (273)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECC--------------------------------------------------------
T ss_pred             CeeccccchhheeecCCCcEEEccchhheeccCCc---------------------------------------------
Confidence            99999999999999999999999999985432110                                             


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf  397 (517)
                                                      ........||+.|+|||++.+..|+.++|||||||++|||++ |.+||
T Consensus       163 --------------------------------~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~  210 (273)
T d1mp8a_         163 --------------------------------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF  210 (273)
T ss_dssp             ----------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCC
Confidence                                            011223468999999999999999999999999999999997 89999


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+.+..+.+..+..+.....  ...      .+.++.+||.+||+.||++|||+.    ||++|
T Consensus       211 ~~~~~~~~~~~i~~~~~~~~--~~~------~~~~~~~li~~cl~~dp~~Rps~~----ei~~~  262 (273)
T d1mp8a_         211 QGVKNNDVIGRIENGERLPM--PPN------CPPTLYSLMTKCWAYDPSRRPRFT----ELKAQ  262 (273)
T ss_dssp             TTCCGGGHHHHHHTTCCCCC--CTT------CCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCC--CCC------CCHHHHHHHHHHcCCCHhHCcCHH----HHHHH
Confidence            99999888888877643211  111      123589999999999999999997    77765

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-53  Score=425.10  Aligned_cols=261  Identities=28%  Similarity=0.442  Sum_probs=199.3

Q ss_pred             CceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec----
Q 010140           85 HFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA----  160 (517)
Q Consensus        85 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----  160 (517)
                      +|+.+++||+|+||+||+|+++.     +++.||||++.++.       ....+|+.+|++++|||||+++++|..    
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~-----~~~~vAiK~i~~~~-------~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~   88 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCD-----SGELVAIKKVLQDK-------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEK   88 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETT-----TCCEEEEEEEECCS-------SSCCHHHHHHHHCCCTTBCCEEEEEEEC--C
T ss_pred             CcEeeeEEeeCcCeEEEEEEECC-----CCCEEEEEEECccc-------hHHHHHHHHHHhcCCCCCCcEEEEEEecCcc
Confidence            69999999999999999999987     68899999997642       122359999999999999999999843    


Q ss_pred             --CceeEEEEEecCCCchhHHHHh-CCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          161 --SHYSCLVMEYCPGGDLYAARQR-QPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       161 --~~~~~lV~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                        ..++|||||||+++.+..+... .....+++..                            ++.|+.||+.||+|||+
T Consensus        89 ~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~----------------------------~~~i~~qil~aL~yLH~  140 (350)
T d1q5ka_          89 KDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY----------------------------VKLYMYQLFRSLAYIHS  140 (350)
T ss_dssp             CSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHH----------------------------HHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEEeccCCccHHHHHhhhhccCCCCHHH----------------------------HHHHHHHHHHHHHHHHh
Confidence              3468999999976543333221 1122333322                            34788999999999999


Q ss_pred             cCceeccCCCCceEEccCC-cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDG-HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~-~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      +|||||||||+|||++.++ .+||+|||+++.+..                                             
T Consensus       141 ~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~---------------------------------------------  175 (350)
T d1q5ka_         141 FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR---------------------------------------------  175 (350)
T ss_dssp             TTEECCCCCGGGEEECTTTCCEEECCCTTCEECCT---------------------------------------------
T ss_pred             cCCcccCCCcceEEEecCCCceeEecccchhhccC---------------------------------------------
Confidence            9999999999999999775 899999999854321                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCC-CCCccchHHHHHHHHHHHhhCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQ-GHGSAVDWWTLGVFLYEMLYGTT  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~-~~~~~~DiWSlGvil~elltG~~  395 (517)
                                                        .....+.+||+.|+|||++.+. .|+.++|||||||++|||++|++
T Consensus       176 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~  221 (350)
T d1q5ka_         176 ----------------------------------GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP  221 (350)
T ss_dssp             ----------------------------------TSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSC
T ss_pred             ----------------------------------CcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCC
Confidence                                              0112345799999999998765 58999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcC-----------------CCCCCCCCCCCch---hHHhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          396 PFKGENNEKTLINILKK-----------------PLTFPRIGVSSSK---EFEEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~-----------------~~~~p~~~~~~~~---~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      ||.+.+..+.+..+.+.                 ...++........   ......++.+||.+||++||++|||+.   
T Consensus       222 pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~---  298 (350)
T d1q5ka_         222 IFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPL---  298 (350)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHH---
T ss_pred             CCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHH---
Confidence            99998887777666431                 1111111110000   001234689999999999999999998   


Q ss_pred             HHhhcCCCcCCCC
Q 010140          456 VEIKRHEFFKGIN  468 (517)
Q Consensus       456 ~ell~hp~f~~~~  468 (517)
                       |+|+||||+.+.
T Consensus       299 -e~L~Hp~f~~~~  310 (350)
T d1q5ka_         299 -EACAHSFFDELR  310 (350)
T ss_dssp             -HHHTSGGGGGGG
T ss_pred             -HHhcCHhhcccc
Confidence             999999998753

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-52  Score=410.63  Aligned_cols=284  Identities=19%  Similarity=0.208  Sum_probs=213.8

Q ss_pred             hcCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceee
Q 010140           77 AQGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYA  156 (517)
Q Consensus        77 ~~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~  156 (517)
                      ...++..++|++++.||+|+||+||+|+.++.....+++.||||+++....  .....++.+|+.+|++++||||+++++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~E~~il~~l~h~niv~~~~   83 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDNPNIVKLLG   83 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC--hHHHHHHHHHHHHHHhcCCCCccccee
Confidence            346677889999999999999999999987644334678899999975432  234567788999999999999999999


Q ss_pred             eeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          157 EFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       157 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                      ++...+.+++||||+++|+|.+++................      .....................|+.||+.||+|||
T Consensus        84 ~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH  157 (301)
T d1lufa_          84 VCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL------STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS  157 (301)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHhcCcccccccccccc------chhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999997654322111110000      0000001111122334456789999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++|||||||||+||||+.++.+||+|||+|+.+.....                                          
T Consensus       158 ~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~------------------------------------------  195 (301)
T d1lufa_         158 ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY------------------------------------------  195 (301)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC------------------------------------------
T ss_pred             cCCeEeeEEcccceEECCCCcEEEccchhheeccCCcc------------------------------------------
Confidence            99999999999999999999999999999854321100                                          


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCC-C
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGT-T  395 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~-~  395 (517)
                                                        .....+..||+.|+|||.+.+..|+.++|||||||++|||++|. +
T Consensus       196 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~  241 (301)
T d1lufa_         196 ----------------------------------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ  241 (301)
T ss_dssp             ----------------------------------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ----------------------------------ccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCC
Confidence                                              11223457899999999999999999999999999999999985 7


Q ss_pred             CCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          396 PFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       396 Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      ||.+.+..+.+..+..+....  .....      +.++.+||.+||+.||++|||+.
T Consensus       242 p~~~~~~~e~~~~v~~~~~~~--~p~~~------~~~~~~li~~cl~~~P~~RPt~~  290 (301)
T d1lufa_         242 PYYGMAHEEVIYYVRDGNILA--CPENC------PLELYNLMRLCWSKLPADRPSFC  290 (301)
T ss_dssp             TTTTSCHHHHHHHHHTTCCCC--CCTTC------CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCHHHHHHHHHcCCCCC--CCccc------hHHHHHHHHHHcCCChhHCcCHH
Confidence            899999898888887765321  11111      22589999999999999999997

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-53  Score=406.79  Aligned_cols=258  Identities=23%  Similarity=0.319  Sum_probs=197.8

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA  160 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~  160 (517)
                      +..++|++++.||+|+||.||+|+.+....  ....||||++.+.........+++.+|+.+|++++|||||++++++.+
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~--~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~   82 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSG--KTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT   82 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTS--CEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCC--cEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            345789999999999999999999875322  335799999987766555667788999999999999999999999976


Q ss_pred             CceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCc
Q 010140          161 SHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGI  240 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  240 (517)
                       +.+|+|||||++|+|.+++.... ..++..                            .++.++.||+.||.|||++||
T Consensus        83 -~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~----------------------------~~~~~~~qi~~gl~ylH~~~i  132 (273)
T d1u46a_          83 -PPMKMVTELAPLGSLLDRLRKHQ-GHFLLG----------------------------TLSRYAVQVAEGMGYLESKRF  132 (273)
T ss_dssp             -SSCEEEEECCTTCBHHHHHHHHG-GGSCHH----------------------------HHHHHHHHHHHHHHHHHHTTE
T ss_pred             -cchheeeeeecCcchhhhhhccc-CCCCHH----------------------------HHHHHHHHHHHHHHHhhhCCE
Confidence             46799999999999998776532 223322                            234788999999999999999


Q ss_pred             eeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccc
Q 010140          241 VYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKA  320 (517)
Q Consensus       241 iHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                      +||||||+|||++.++.+||+|||+++........                                             
T Consensus       133 iHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~---------------------------------------------  167 (273)
T d1u46a_         133 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH---------------------------------------------  167 (273)
T ss_dssp             ECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE---------------------------------------------
T ss_pred             eeeeecHHHhccccccceeeccchhhhhcccCCCc---------------------------------------------
Confidence            99999999999999999999999998654321100                                             


Q ss_pred             ccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCC
Q 010140          321 VTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKG  399 (517)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~  399 (517)
                                                    ........||..|+|||++.+..++.++|||||||++|||++ |..||.+
T Consensus       168 ------------------------------~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~  217 (273)
T d1u46a_         168 ------------------------------YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG  217 (273)
T ss_dssp             ------------------------------EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ------------------------------ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCC
Confidence                                          111233468889999999999999999999999999999998 8999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          400 ENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       400 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      .+..+.+..+......++.... .+      .++.+||.+||+.||++|||+.
T Consensus       218 ~~~~~~~~~i~~~~~~~~~~~~-~~------~~l~~li~~cl~~dp~~RPt~~  263 (273)
T d1u46a_         218 LNGSQILHKIDKEGERLPRPED-CP------QDIYNVMVQCWAHKPEDRPTFV  263 (273)
T ss_dssp             CCHHHHHHHHHTSCCCCCCCTT-CC------HHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCHHHHHHHHHhCCCCCCCccc-cc------HHHHHHHHHHcCCChhHCcCHH
Confidence            9999998888877655443221 12      2489999999999999999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-52  Score=405.52  Aligned_cols=262  Identities=19%  Similarity=0.216  Sum_probs=197.9

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE  159 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  159 (517)
                      ++..++|++.++||+|+||+||+|+++.... .....||||++......  .....+.+|+.+|++++|||||++++++.
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~-~~~~~vAvK~~~~~~~~--~~~~~~~~E~~il~~l~H~nIv~~~g~~~   79 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSG-KKEVPVAIKTLKAGYTE--KQRVDFLGEAGIMGQFSHHNIIRLEGVIS   79 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC----CCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCC-EEEEEEEEEEECcccCh--HHHHHHHHHHHHHHhcCCCCEeeeeEEEe
Confidence            4566889999999999999999999876322 13457999998654322  23456778999999999999999999999


Q ss_pred             cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcC
Q 010140          160 ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMG  239 (517)
Q Consensus       160 ~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~  239 (517)
                      +.+.+++|||||.+|+|.+++.... ..+...                            .+..++.||+.||+|||+++
T Consensus        80 ~~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~----------------------------~~~~i~~~i~~gl~~lH~~~  130 (283)
T d1mqba_          80 KYKPMMIITEYMENGALDKFLREKD-GEFSVL----------------------------QLVGMLRGIAAGMKYLANMN  130 (283)
T ss_dssp             SSSSEEEEEECCTTEEHHHHHHHTT-TCSCHH----------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCceEEEEEecccCcchhhhhccc-ccccHH----------------------------HHHHHHHHHHHhhhhccccc
Confidence            9999999999999999988776542 222222                            22378899999999999999


Q ss_pred             ceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          240 IVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       240 iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      ||||||||+||||+.++.+||+|||+|+.+......                                            
T Consensus       131 iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~--------------------------------------------  166 (283)
T d1mqba_         131 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA--------------------------------------------  166 (283)
T ss_dssp             CCCSCCCGGGEEECTTCCEEECCCCC------------------------------------------------------
T ss_pred             cccCccccceEEECCCCeEEEcccchhhcccCCCcc--------------------------------------------
Confidence            999999999999999999999999998543321100                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TTPFK  398 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~Pf~  398 (517)
                                                     ........||+.|||||++.+..++.++|||||||++|||++| .+||.
T Consensus       167 -------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~  215 (283)
T d1mqba_         167 -------------------------------TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  215 (283)
T ss_dssp             --------------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             -------------------------------ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc
Confidence                                           0112234689999999999999999999999999999999995 55566


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          399 GENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       399 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +.+..+.+..+..+.. .+.. ..      .+.++.+||.+||+.||++||++.    ||++
T Consensus       216 ~~~~~~~~~~i~~~~~-~~~~-~~------~~~~l~~li~~cl~~~p~~RPt~~----eil~  265 (283)
T d1mqba_         216 ELSNHEVMKAINDGFR-LPTP-MD------CPSAIYQLMMQCWQQERARRPKFA----DIVS  265 (283)
T ss_dssp             TCCHHHHHHHHHTTCC-CCCC-TT------CBHHHHHHHHHHTCSSTTTSCCHH----HHHH
T ss_pred             cCCHHHHHHHHhccCC-CCCc-hh------hHHHHHHHHHHHCcCCHhHCcCHH----HHHH
Confidence            6666666666655432 2211 11      123589999999999999999987    6654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-53  Score=422.25  Aligned_cols=278  Identities=26%  Similarity=0.359  Sum_probs=204.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeee---
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFE---  159 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~---  159 (517)
                      +++|+++++||+|+||+||+|+++.     +++.||||++.+.... .....++.+|+.+|++++|||||+++++|.   
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~-----t~~~vAvK~i~~~~~~-~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~   89 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAV-----LDRNVAIKKLSRPFQN-QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK   89 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETT-----TTEEEEEEEEESTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECC-----CCCEEEEEEEChhhcC-HHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccc
Confidence            3789999999999999999999987     7899999999754322 234456778999999999999999999995   


Q ss_pred             ---cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Q 010140          160 ---ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLH  236 (517)
Q Consensus       160 ---~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH  236 (517)
                         ...++|+|||||.+ +|.+.+..    .+++.                            .++.+++||+.||+|||
T Consensus        90 ~~~~~~~~~iv~Ey~~~-~l~~~~~~----~~~~~----------------------------~i~~~~~qil~gl~~LH  136 (355)
T d2b1pa1          90 TLEEFQDVYLVMELMDA-NLCQVIQM----ELDHE----------------------------RMSYLLYQMLCGIKHLH  136 (355)
T ss_dssp             STTTCCEEEEEEECCSE-EHHHHHTS----CCCHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ccccCceeEEEEeccch-HHHHhhhc----CCCHH----------------------------HHHHHHHHHHHHHHHhh
Confidence               34689999999965 45444422    23322                            33578999999999999


Q ss_pred             hcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          237 MMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       237 ~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ++||+||||||+|||++.++.+|++|||+++....                                             
T Consensus       137 ~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~---------------------------------------------  171 (355)
T d2b1pa1         137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT---------------------------------------------  171 (355)
T ss_dssp             HTTCCCSCCCGGGEEECTTCCEEECCCCC---------------------------------------------------
T ss_pred             hcccccccCCccccccccccceeeechhhhhcccc---------------------------------------------
Confidence            99999999999999999999999999998743221                                             


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        .......+||+.|+|||++.+..++.++||||+||++|+|++|++|
T Consensus       172 ----------------------------------~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~p  217 (355)
T d2b1pa1         172 ----------------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKIL  217 (355)
T ss_dssp             -------------------------------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------ccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCC
Confidence                                              1122345799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCC----------------------CCC---------C--CCCCchhHHhhhhHHHHHHHhccC
Q 010140          397 FKGENNEKTLINILKKPLT----------------------FPR---------I--GVSSSKEFEEVVKLQDLISKLLVK  443 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~----------------------~p~---------~--~~~~~~~~~~~~~l~dLi~~~L~~  443 (517)
                      |.+.+......++......                      ...         .  ..........+.++.+||.+||..
T Consensus       218 F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~  297 (355)
T d2b1pa1         218 FPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI  297 (355)
T ss_dssp             SCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcC
Confidence            9988877666655421110                      000         0  000011112345789999999999


Q ss_pred             CcccccCCCCChHHhhcCCCcCCCCcccccCCCCCCCCC
Q 010140          444 NPKKRIGSLKGSVEIKRHEFFKGINWALIRSIKPPEVPN  482 (517)
Q Consensus       444 dP~~R~t~~~~~~ell~hp~f~~~~~~~~~~~~p~~~~~  482 (517)
                      ||++|||++    |||+||||+...+.......+|...+
T Consensus       298 dP~~R~ta~----elL~Hpw~~~~~~~~~~~~~~~~~~~  332 (355)
T d2b1pa1         298 DPAKRISVD----DALQHPYINVWYDPAEVEAPPPQIYD  332 (355)
T ss_dssp             STTTSCCHH----HHHTSTTTGGGCCHHHHTCCCC----
T ss_pred             ChhHCcCHH----HHhcCcccCCCCCcccccCCCCCCCC
Confidence            999999998    99999999975444444445554443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-52  Score=408.55  Aligned_cols=266  Identities=22%  Similarity=0.304  Sum_probs=206.3

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      +++|+++++||+|+||+||+|+++.     +++.||||+++.... ......++.+|+.+|+.++|||||+++++|.+..
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~-----~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~   74 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRE-----THEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDK   74 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETT-----TCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECC-----CCcEEEEEEEehhhC-ChHHHHHHHHHHHHHHhcCcCCEEeecccccccc
Confidence            4789999999999999999999987     678999999865432 2244567788999999999999999999999999


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..++|||++.|++|..++...  ..+...                            .++.++.|++.||+|||++||||
T Consensus        75 ~~~iv~~~~~~~~l~~~~~~~--~~~~~~----------------------------~~~~~~~q~~~aL~~lH~~~IvH  124 (292)
T d1unla_          75 KLTLVFEFCDQDLKKYFDSCN--GDLDPE----------------------------IVKSFLFQLLKGLGFCHSRNVLH  124 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHTT--TCCCHH----------------------------HHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             ceeEEeeeccccccccccccc--cccchh----------------------------HHHHHHHHHHHHHHHhhcCCEee
Confidence            999999999999888776653  223222                            23478899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+|||++.++.+||+|||.|+......                                                 
T Consensus       125 rDiKP~NIli~~~~~~kl~DFG~a~~~~~~~-------------------------------------------------  155 (292)
T d1unla_         125 RDLKPQNLLINRNGELKLANFGLARAFGIPV-------------------------------------------------  155 (292)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTCEECCSCC-------------------------------------------------
T ss_pred             ecccCcccccccCCceeeeecchhhcccCCC-------------------------------------------------
Confidence            9999999999999999999999985433110                                                 


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCCCC-CC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTPFK-GE  400 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~Pf~-~~  400 (517)
                                                   .......+++.|+|||++.+.. ++.++|||||||++|||++|..||. +.
T Consensus       156 -----------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~  206 (292)
T d1unla_         156 -----------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_dssp             -----------------------------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred             -----------------------------ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCC
Confidence                                         0112335788999999998765 6999999999999999999998854 45


Q ss_pred             ChHHHHHHHhcCCCCCCCC--------------------CCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          401 NNEKTLINILKKPLTFPRI--------------------GVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       401 ~~~~~~~~i~~~~~~~p~~--------------------~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +..+.+.++..........                    .............+.+||.+||+.||.+|||+.    |+|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~----e~L~  282 (292)
T d1unla_         207 DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAE----EALQ  282 (292)
T ss_dssp             SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHH----HHTT
T ss_pred             CHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHH----HHhc
Confidence            5555555543211100000                    000000011234589999999999999999998    9999


Q ss_pred             CCCcCC
Q 010140          461 HEFFKG  466 (517)
Q Consensus       461 hp~f~~  466 (517)
                      ||||++
T Consensus       283 Hp~f~~  288 (292)
T d1unla_         283 HPYFSD  288 (292)
T ss_dssp             SGGGSS
T ss_pred             ChhhcC
Confidence            999985

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-52  Score=415.13  Aligned_cols=266  Identities=25%  Similarity=0.338  Sum_probs=199.8

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      ++|+++++||+|+||+||+|+++.     +++.||||++.+...  ....+++.+|+.+|+.++||||+++++++.... 
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~-----~~~~vAvK~i~~~~~--~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~   80 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNV-----NKVRVAIKKISPFEH--QTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   80 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETT-----TCSEEEEEEECCTTC--HHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             CCeEEEEEEeeccCeEEEEEEECC-----CCcEEEEEEEehhcC--hHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Confidence            579999999999999999999876     678999999975432  234567778999999999999999999996543 


Q ss_pred             ----eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          163 ----YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       163 ----~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                          .+||+ +|+.||+|.+++...   .+++..                            ++.++.||+.||+|||++
T Consensus        81 ~~~~~~~l~-~~~~~g~L~~~l~~~---~l~~~~----------------------------i~~i~~qil~al~yLH~~  128 (345)
T d1pmea_          81 EQMKDVYLV-THLMGADLYKLLKTQ---HLSNDH----------------------------ICYFLYQILRGLKYIHSA  128 (345)
T ss_dssp             TTCCCEEEE-EECCCEEHHHHHHHC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEE-EeecCCchhhhhhcC---CCCHHH----------------------------HHHHHHHHHHHHHHHHHC
Confidence                34555 556699999998753   333332                            347889999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+||||+.+|.+||+|||+|+.......                                            
T Consensus       129 ~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~--------------------------------------------  164 (345)
T d1pmea_         129 NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD--------------------------------------------  164 (345)
T ss_dssp             TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGC--------------------------------------------
T ss_pred             CCcCCCCCcceEEECCCCCEEEcccCceeeccCCCc--------------------------------------------
Confidence            999999999999999999999999999854321100                                            


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcC-CCCCccchHHHHHHHHHHHhhCCCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISG-QGHGSAVDWWTLGVFLYEMLYGTTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~-~~~~~~~DiWSlGvil~elltG~~Pf  397 (517)
                                                     ........+||+.|+|||++.. ..++.++||||+||++|+|++|+.||
T Consensus       165 -------------------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf  213 (345)
T d1pmea_         165 -------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF  213 (345)
T ss_dssp             -------------------------------BCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             -------------------------------cceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCC
Confidence                                           0112244579999999999854 45799999999999999999999999


Q ss_pred             CCCChHHHHHHHhcCCCC--------------------CCCCCCCCc-hhH-HhhhhHHHHHHHhccCCcccccCCCCCh
Q 010140          398 KGENNEKTLINILKKPLT--------------------FPRIGVSSS-KEF-EEVVKLQDLISKLLVKNPKKRIGSLKGS  455 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~--------------------~p~~~~~~~-~~~-~~~~~l~dLi~~~L~~dP~~R~t~~~~~  455 (517)
                      .+.+..+...........                    .+....... ..+ ....++++||.+||+.||.+|||+.   
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~---  290 (345)
T d1pmea_         214 PGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE---  290 (345)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHH---
T ss_pred             CCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHH---
Confidence            988776555444321100                    011000000 000 1123589999999999999999998   


Q ss_pred             HHhhcCCCcCCC
Q 010140          456 VEIKRHEFFKGI  467 (517)
Q Consensus       456 ~ell~hp~f~~~  467 (517)
                       |+|+||||+..
T Consensus       291 -e~L~hpf~~~~  301 (345)
T d1pmea_         291 -QALAHPYLEQY  301 (345)
T ss_dssp             -HHHTSGGGTTT
T ss_pred             -HHhcCHhhccC
Confidence             99999999854

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-52  Score=401.61  Aligned_cols=249  Identities=22%  Similarity=0.306  Sum_probs=197.3

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEF  158 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~  158 (517)
                      +.+..++|++++.||+|+||.||+|++++       ..||||+++++.     ..+.+.+|+.+|++++|||||++++++
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-------~~vAvK~i~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~   69 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDYRG-------NKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVI   69 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETT-------EEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEE
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEECC-------eEEEEEEECcHH-----HHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            56788999999999999999999999754       579999997653     235677899999999999999999988


Q ss_pred             e-cCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          159 E-ASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       159 ~-~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      . ..+.+|||||||++|+|.+++.......++..                            .++.++.||+.||.|||+
T Consensus        70 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~----------------------------~~~~i~~~i~~al~ylH~  121 (262)
T d1byga_          70 VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGD----------------------------CLLKFSLDVCEAMEYLEG  121 (262)
T ss_dssp             CCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             EecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHH----------------------------HHHHHHHHHHhhcccccc
Confidence            5 45678999999999999999865422222222                            234788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ++|+||||||+|||++.+|.+||+|||+++....                                              
T Consensus       122 ~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~----------------------------------------------  155 (262)
T d1byga_         122 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS----------------------------------------------  155 (262)
T ss_dssp             TTCCCSCCSGGGEEECTTSCEEECCCCC----------------------------------------------------
T ss_pred             CceeccccchHhheecCCCCEeecccccceecCC----------------------------------------------
Confidence            9999999999999999999999999999843211                                              


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                         ......+|+.|+|||++.+..++.++|||||||++|||++ |++|
T Consensus       156 -----------------------------------~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p  200 (262)
T d1byga_         156 -----------------------------------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP  200 (262)
T ss_dssp             -----------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             -----------------------------------CCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCC
Confidence                                               1123358899999999999899999999999999999998 7999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |.+.+..+....+..+...  ......+      .++++||.+||+.||++|||+.    ++++
T Consensus       201 ~~~~~~~~~~~~i~~~~~~--~~~~~~~------~~~~~li~~cl~~dP~~Rps~~----~l~~  252 (262)
T d1byga_         201 YPRIPLKDVVPRVEKGYKM--DAPDGCP------PAVYEVMKNCWHLDAAMRPSFL----QLRE  252 (262)
T ss_dssp             CTTSCGGGHHHHHTTTCCC--CCCTTCC------HHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCCHHHHHHHHHcCCCC--CCCccCC------HHHHHHHHHHcccCHhHCcCHH----HHHH
Confidence            9998888888887654221  1111222      2589999999999999999997    6654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-51  Score=407.69  Aligned_cols=257  Identities=20%  Similarity=0.233  Sum_probs=198.8

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH  162 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~  162 (517)
                      .++|+++++||+|+||+||+|+++.+... ....||+|.+.....  ....+.+.+|+.+|++++|||||++++++.++ 
T Consensus         8 ~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-   83 (317)
T d1xkka_           8 ETEFKKIKVLGSGAFGTVYKGLWIPEGEK-VKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTS-   83 (317)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECC-----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             HHHCEEeeEEecCCCeEEEEEEEcCCCCE-EEEEEEEEEeccccC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-
Confidence            36799999999999999999998763211 234688998865422  23456788899999999999999999999865 


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..+++|||+.+|+|.+++.... ..++...                            ++.|+.||+.||+|||++||||
T Consensus        84 ~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~----------------------------~~~i~~qi~~gl~yLH~~~iiH  134 (317)
T d1xkka_          84 TVQLITQLMPFGCLLDYVREHK-DNIGSQY----------------------------LLNWCVQIAKGMNYLEDRRLVH  134 (317)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTS-SSCCHHH----------------------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CeeEEEEeccCCcccccccccc-cCCCHHH----------------------------HHHHHHHHHHHHHHHHHcCccc
Confidence            5678899999999998876642 2232222                            2378899999999999999999


Q ss_pred             ccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccc
Q 010140          243 RDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVT  322 (517)
Q Consensus       243 rDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                      |||||+||||+.++++||+|||+|+.......                                                
T Consensus       135 rDlKp~NIll~~~~~~kl~DFGla~~~~~~~~------------------------------------------------  166 (317)
T d1xkka_         135 RDLAARNVLVKTPQHVKITDFGLAKLLGAEEK------------------------------------------------  166 (317)
T ss_dssp             SCCCGGGEEEEETTEEEECCCSHHHHTTTTCC------------------------------------------------
T ss_pred             CcchhhcceeCCCCCeEeeccccceecccccc------------------------------------------------
Confidence            99999999999999999999999854321100                                                


Q ss_pred             ccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCCCCCCC
Q 010140          323 VTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTPFKGEN  401 (517)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~Pf~~~~  401 (517)
                                                  ........||+.|||||++.+..|+.++|||||||++|||+| |.+||.+.+
T Consensus       167 ----------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~  218 (317)
T d1xkka_         167 ----------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  218 (317)
T ss_dssp             ------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             ----------------------------cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC
Confidence                                        011223468999999999999999999999999999999998 899999988


Q ss_pred             hHHHHHHHhcCCC-CCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          402 NEKTLINILKKPL-TFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       402 ~~~~~~~i~~~~~-~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ..++...+..+.. ..|.   .      .+.++.+||.+||+.||.+|||+.    |+++|
T Consensus       219 ~~~~~~~i~~~~~~~~p~---~------~~~~~~~li~~cl~~dP~~RPs~~----eil~~  266 (317)
T d1xkka_         219 ASEISSILEKGERLPQPP---I------CTIDVYMIMVKCWMIDADSRPKFR----ELIIE  266 (317)
T ss_dssp             GGGHHHHHHHTCCCCCCT---T------BCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             HHHHHHHHHcCCCCCCCc---c------cCHHHHHHHHHhCCCChhhCcCHH----HHHHH
Confidence            8777776665432 2221   1      123589999999999999999997    88877

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-52  Score=407.76  Aligned_cols=280  Identities=21%  Similarity=0.235  Sum_probs=217.4

Q ss_pred             cCCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeee
Q 010140           78 QGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAE  157 (517)
Q Consensus        78 ~~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~  157 (517)
                      ++++..++|++++.||+|+||+||+|.++.......+..||||++++...  ......+.+|+.++++++|||||+++++
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~--~~~~~~~~~E~~il~~l~h~nIv~~~~~   91 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS--MRERIEFLNEASVMKEFNCHHVVRLLGV   91 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC--HHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccC--hHHHHHHHHHHHHHHHcCCCCEeeeeeE
Confidence            35677799999999999999999999987533333567899999975432  2344567889999999999999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +..++..++|||||++|+|.+++...........                    .........+..++.||+.||.|||+
T Consensus        92 ~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~i~~~ia~gl~~LH~  151 (308)
T d1p4oa_          92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP--------------------VLAPPSLSKMIQMAGEIADGMAYLNA  151 (308)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCT--------------------TCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCceeEEEeecCCCCHHHHHHhccccccccc--------------------ccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998865311000000                    00001122335789999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      ++|+||||||+||||+.++++||+|||+|+.......                                           
T Consensus       152 ~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~-------------------------------------------  188 (308)
T d1p4oa_         152 NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY-------------------------------------------  188 (308)
T ss_dssp             TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGC-------------------------------------------
T ss_pred             CCeeeceEcCCceeecCCceEEEeecccceeccCCcc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~P  396 (517)
                                                       ........||+.|+|||.+.+..++.++|||||||++|||++| .+|
T Consensus       189 ---------------------------------~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p  235 (308)
T d1p4oa_         189 ---------------------------------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP  235 (308)
T ss_dssp             ---------------------------------EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred             ---------------------------------eeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCC
Confidence                                             1112334689999999999999999999999999999999998 688


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc------CCCcCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR------HEFFKGI  467 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~------hp~f~~~  467 (517)
                      |.+.+..+.+..+..+......  ...      +..+.+||.+||+.||++|||+.    ||++      +|+|+.+
T Consensus       236 ~~~~~~~~~~~~i~~~~~~~~p--~~~------~~~l~~li~~cl~~~P~~RPs~~----~il~~L~~~~~~~~~~~  300 (308)
T d1p4oa_         236 YQGLSNEQVLRFVMEGGLLDKP--DNC------PDMLFELMRMCWQYNPKMRPSFL----EIISSIKEEMEPGFREV  300 (308)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCC--TTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHHHGGGSCTTHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCCCCc--ccc------hHHHHHHHHHHcCCChhHCcCHH----HHHHHHHHhcCCCCcCC
Confidence            9999988888888775532211  111      12599999999999999999997    5555      6776543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-51  Score=399.91  Aligned_cols=278  Identities=20%  Similarity=0.235  Sum_probs=206.2

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCC--CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCcccee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVG--LPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLY  155 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~  155 (517)
                      +.+..++|++++.||+|+||.||+|+.......  ..+..||||+++++...  .....+.+|..++.++ +|||||+++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~e~~~l~~~~~HpnIv~~~   85 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATE--KDLSDLISEMEMMKMIGKHKNIINLL   85 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccCh--HHHHHHHHHHHHHHHhcCCCeEEecc
Confidence            556779999999999999999999998764321  23457999999765322  3345677788888888 899999999


Q ss_pred             eeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Q 010140          156 AEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYL  235 (517)
Q Consensus       156 ~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  235 (517)
                      +++.+++.+|+|||||++|+|.+++.............              .............+..|+.||+.||+||
T Consensus        86 ~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~qi~~al~yl  151 (299)
T d1fgka_          86 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN--------------PSHNPEEQLSSKDLVSCAYQVARGMEYL  151 (299)
T ss_dssp             EEECSSSSCEEEECCCTTCBHHHHHHTTSCC--------------------------CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccc--------------cccCccccCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999997653221111000              0001112223344568999999999999


Q ss_pred             HhcCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccc
Q 010140          236 HMMGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKK  315 (517)
Q Consensus       236 H~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      |++|||||||||+|||++.++.+||+|||+++......                                          
T Consensus       152 H~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~------------------------------------------  189 (299)
T d1fgka_         152 ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID------------------------------------------  189 (299)
T ss_dssp             HHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCC------------------------------------------
T ss_pred             hhCCEEeeeecccceeecCCCCeEeccchhhccccccc------------------------------------------
Confidence            99999999999999999999999999999985433110                                          


Q ss_pred             cccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CC
Q 010140          316 NKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GT  394 (517)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~  394 (517)
                                                        .........||+.|+|||.+.+..|+.++|||||||++|||++ |.
T Consensus       190 ----------------------------------~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~  235 (299)
T d1fgka_         190 ----------------------------------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG  235 (299)
T ss_dssp             ----------------------------------TTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             ----------------------------------cccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCC
Confidence                                              0112234578999999999999999999999999999999998 79


Q ss_pred             CCCCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          395 TPFKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       395 ~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      +||.+.+..+.+..+..+.. .+. ....+      .++.+||.+||+.||.+|||+.    ||++
T Consensus       236 ~p~~~~~~~~~~~~i~~~~~-~~~-p~~~~------~~l~~li~~cl~~dP~~Rps~~----eil~  289 (299)
T d1fgka_         236 SPYPGVPVEELFKLLKEGHR-MDK-PSNCT------NELYMMMRDCWHAVPSQRPTFK----QLVE  289 (299)
T ss_dssp             CSSTTCCHHHHHHHHHTTCC-CCC-CSSCC------HHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCCCCHHHHHHHHHcCCC-CCC-Cccch------HHHHHHHHHHccCCHhHCcCHH----HHHH
Confidence            99998888877777665432 221 11112      2489999999999999999997    6664

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-51  Score=403.69  Aligned_cols=281  Identities=17%  Similarity=0.220  Sum_probs=213.7

Q ss_pred             CCcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeee
Q 010140           79 GRVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAE  157 (517)
Q Consensus        79 ~~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~  157 (517)
                      +++..++|+++++||+|+||.||+|+++......+++.||||+++.....  .....+.+|+.+++++ +|||||+++++
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~~E~~~~~~l~~HpnIv~~~g~   95 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL--TEREALMSELKVLSYLGNHMNIVNLLGA   95 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCH--HHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            45677899999999999999999999876544457789999999754322  3345677899999999 79999999999


Q ss_pred             eecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          158 FEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       158 ~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                      +.+.+.+|||||||++|+|.+++................            .............+.|+.||+.||+|||+
T Consensus        96 ~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~qi~~gl~~LH~  163 (311)
T d1t46a_          96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI------------MEDDELALDLEDLLSFSYQVAKGMAFLAS  163 (311)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCEEEEEEEcCCCCCHHHHHHhcccccccccccccc------------ccccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998754322211110000            00011122344556899999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +|||||||||+|||++.++.+||+|||+++.+.....                                           
T Consensus       164 ~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~-------------------------------------------  200 (311)
T d1t46a_         164 KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN-------------------------------------------  200 (311)
T ss_dssp             TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTT-------------------------------------------
T ss_pred             CCeeecccccccccccccCcccccccchheeccCCCc-------------------------------------------
Confidence            9999999999999999999999999999854331110                                           


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhh-CCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLY-GTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~ellt-G~~P  396 (517)
                                                       .......+||+.|+|||++.+..++.++|||||||++|||++ |.+|
T Consensus       201 ---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~  247 (311)
T d1t46a_         201 ---------------------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP  247 (311)
T ss_dssp             ---------------------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------------------------ceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCC
Confidence                                             011234579999999999999999999999999999999998 6777


Q ss_pred             CCCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhc
Q 010140          397 FKGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKR  460 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~  460 (517)
                      |.+.+..+.+.+++.......... ..      +.++.+||.+||+.||++|||+.    ||++
T Consensus       248 ~~~~~~~~~~~~~i~~~~~~~~~~-~~------~~~l~~Li~~cl~~dP~~RPs~~----~il~  300 (311)
T d1t46a_         248 YPGMPVDSKFYKMIKEGFRMLSPE-HA------PAEMYDIMKTCWDADPLKRPTFK----QIVQ  300 (311)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCT-TS------CHHHHHHHHHHTCSSGGGSCCHH----HHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCcc-cc------cHHHHHHHHHHcCCChhHCcCHH----HHHH
Confidence            877777676666665443332221 11      22589999999999999999997    6654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-51  Score=413.98  Aligned_cols=263  Identities=26%  Similarity=0.336  Sum_probs=203.0

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecC-
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEAS-  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-  161 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||++.+.... .....++.+|+.+|+.++|||||+++++|... 
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~   90 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTK-----TGLRVAVKKLSRPFQS-IIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   90 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETT-----TTEEEEEEECSCTTSS-HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCS
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEECchhcC-hHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecc
Confidence            3689999999999999999999886     7899999999754322 23345677899999999999999999999633 


Q ss_pred             ----ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh
Q 010140          162 ----HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM  237 (517)
Q Consensus       162 ----~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~  237 (517)
                          ...++||+|+.||+|.+++...   ++++..+                            +.++.||+.||+|||+
T Consensus        91 ~~~~~~~~~i~~~~~gg~L~~~~~~~---~l~e~~~----------------------------~~i~~qil~aL~~LH~  139 (348)
T d2gfsa1          91 SLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHV----------------------------QFLIYQILRGLKYIHS  139 (348)
T ss_dssp             STTTCCCCEEEEECCSEEHHHHHTTC---CCCHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred             ccccCceEEEEEeecCCchhhhcccc---cccHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence                3346667777799999988542   3443333                            4788999999999999


Q ss_pred             cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccc
Q 010140          238 MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNK  317 (517)
Q Consensus       238 ~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                      +||+||||||+|||++.+|.+|++|||++....                                               
T Consensus       140 ~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~-----------------------------------------------  172 (348)
T d2gfsa1         140 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTD-----------------------------------------------  172 (348)
T ss_dssp             TTCCCCCCCGGGEEECTTCCEEECCC----CCT-----------------------------------------------
T ss_pred             CCCcccccCCccccccccccccccccchhcccC-----------------------------------------------
Confidence            999999999999999999999999999983221                                               


Q ss_pred             cccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC-CCccchHHHHHHHHHHHhhCCCC
Q 010140          318 KKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG-HGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~-~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                        ....+..||+.|+|||++.+.. ++.++|||||||++|+|++|++|
T Consensus       173 ----------------------------------~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~p  218 (348)
T d2gfsa1         173 ----------------------------------DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL  218 (348)
T ss_dssp             ----------------------------------GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCC
Confidence                                              1123457999999999988765 68999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCCCC--------------------CCCCCch--hHHhhhhHHHHHHHhccCCcccccCCCCC
Q 010140          397 FKGENNEKTLINILKKPLTFPR--------------------IGVSSSK--EFEEVVKLQDLISKLLVKNPKKRIGSLKG  454 (517)
Q Consensus       397 f~~~~~~~~~~~i~~~~~~~p~--------------------~~~~~~~--~~~~~~~l~dLi~~~L~~dP~~R~t~~~~  454 (517)
                      |.+.+.......+.......+.                    .......  ......+++|||.+||+.||++|||+.  
T Consensus       219 F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~--  296 (348)
T d2gfsa1         219 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA--  296 (348)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHH--
T ss_pred             CCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHH--
Confidence            9998887777666543211110                    0000000  001234689999999999999999998  


Q ss_pred             hHHhhcCCCcCCC
Q 010140          455 SVEIKRHEFFKGI  467 (517)
Q Consensus       455 ~~ell~hp~f~~~  467 (517)
                        |+|+||||+..
T Consensus       297 --elL~Hp~f~~~  307 (348)
T d2gfsa1         297 --QALAHAYFAQY  307 (348)
T ss_dssp             --HHHTSGGGTTT
T ss_pred             --HHhcCHhhCCC
Confidence              99999999864

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-51  Score=404.05  Aligned_cols=272  Identities=20%  Similarity=0.235  Sum_probs=204.8

Q ss_pred             CcCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhc-CCCCccceeeee
Q 010140           80 RVGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTML-DHPFLPTLYAEF  158 (517)
Q Consensus        80 ~~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~  158 (517)
                      .+..++|++.++||+|+||+||+|+++.+.   ....||||.+.....  ....+.+.+|+.+|.++ +|||||++++++
T Consensus         6 ~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~---~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~   80 (309)
T d1fvra_           6 VLDWNDIKFQDVIGEGNFGQVLKARIKKDG---LRMDAAIKRMKEYAS--KDDHRDFAGELEVLCKLGHHPNIINLLGAC   80 (309)
T ss_dssp             BCCGGGCEEEEEEECGGGCEEEEEEEEETT---EEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEE
T ss_pred             ccCHHHcEEEEEEeeCCCcEEEEEEECCCC---eEEEEEEEEECcccC--hHHHHHHHHHHHHHHhccCCCCEeeEEEEE
Confidence            456789999999999999999999998721   123477888754322  23456788899999998 799999999999


Q ss_pred             ecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhc
Q 010140          159 EASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMM  238 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~  238 (517)
                      .+++.+|+|||||+||+|.+++..........  ...            ........+.......++.||+.||.|||++
T Consensus        81 ~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~  146 (309)
T d1fvra_          81 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP--AFA------------IANSTASTLSSQQLLHFAADVARGMDYLSQK  146 (309)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHTTCHHHHCH--HHH------------HHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCeeEEEEEecCCCcHHHHHhhccccccch--hhh------------ccccccCCCCHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999987642110000  000            0000111223334468899999999999999


Q ss_pred             CceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccc
Q 010140          239 GIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKK  318 (517)
Q Consensus       239 ~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (517)
                      |||||||||+|||++.++.+||+|||+|+....                                               
T Consensus       147 ~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~-----------------------------------------------  179 (309)
T d1fvra_         147 QFIHRDLAARNILVGENYVAKIADFGLSRGQEV-----------------------------------------------  179 (309)
T ss_dssp             TEECSCCSGGGEEECGGGCEEECCTTCEESSCE-----------------------------------------------
T ss_pred             CccccccccceEEEcCCCceEEccccccccccc-----------------------------------------------
Confidence            999999999999999999999999999843221                                               


Q ss_pred             ccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhC-CCCC
Q 010140          319 KAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYG-TTPF  397 (517)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG-~~Pf  397 (517)
                                                      ........||+.|+|||.+.+..|+.++|||||||++|||++| .+||
T Consensus       180 --------------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~  227 (309)
T d1fvra_         180 --------------------------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY  227 (309)
T ss_dssp             --------------------------------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------------------------cccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCC
Confidence                                            0111234689999999999999999999999999999999996 5678


Q ss_pred             CCCChHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          398 KGENNEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       398 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      .+.+..+++..+..+...  .....      .+.++.+||.+||+.||++||++.    ||++|
T Consensus       228 ~~~~~~~~~~~i~~~~~~--~~~~~------~~~~~~~li~~cl~~dP~~RPs~~----eil~~  279 (309)
T d1fvra_         228 CGMTCAELYEKLPQGYRL--EKPLN------CDDEVYDLMRQCWREKPYERPSFA----QILVS  279 (309)
T ss_dssp             TTCCHHHHHHHGGGTCCC--CCCTT------BCHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             CCCCHHHHHHHHHhcCCC--CCCcc------CCHHHHHHHHHHcCCChhHCcCHH----HHHHH
Confidence            888888888887765321  11111      123599999999999999999998    88876

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-49  Score=385.39  Aligned_cols=255  Identities=17%  Similarity=0.195  Sum_probs=191.6

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeec-CceeEE
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEA-SHYSCL  166 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~l  166 (517)
                      +.++||+|+||+||+|++.....  +...||||++++..  ......++.+|+.+|++++|||||++++++.. ++..|+
T Consensus        31 ~~~~iG~G~fg~Vyk~~~~~~~~--~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~l  106 (311)
T d1r0pa_          31 FNEVIGRGHFGCVYHGTLLDNDG--KKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  106 (311)
T ss_dssp             EEEEEEEETTEEEEEEEECC------CEEEEEEEECCCC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEE
T ss_pred             cceEEeecCCeEEEEEEEECCCC--EEEEEEEEEECccc--CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEE
Confidence            46789999999999999876321  33468999986432  13445778889999999999999999998754 568999


Q ss_pred             EEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCceeccCC
Q 010140          167 VMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVYRDLK  246 (517)
Q Consensus       167 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiHrDLK  246 (517)
                      |||||++|+|.+++..... .....                            ....++.||+.||.|||+++|+|||||
T Consensus       107 v~E~~~~g~l~~~~~~~~~-~~~~~----------------------------~~~~i~~qia~gL~~lH~~~iiHrDLK  157 (311)
T d1r0pa_         107 VLPYMKHGDLRNFIRNETH-NPTVK----------------------------DLIGFGLQVAKGMKFLASKKFVHRDLA  157 (311)
T ss_dssp             EEECCTTCBHHHHHHCTTC-CCBHH----------------------------HHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEeecCchhhhhccccc-cchHH----------------------------HHHHHHHHHHHhhhhhcccCcccCCcc
Confidence            9999999999998765421 11111                            123678999999999999999999999


Q ss_pred             CCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccccccccccccc
Q 010140          247 PENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKKAVTVTTI  326 (517)
Q Consensus       247 p~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      |+||||+.++.+||+|||+++........                                                   
T Consensus       158 ~~NILl~~~~~~kL~DFG~~~~~~~~~~~---------------------------------------------------  186 (311)
T d1r0pa_         158 ARNCMLDEKFTVKVADFGLARDMYDKEFD---------------------------------------------------  186 (311)
T ss_dssp             GGGEEECTTCCEEECSSGGGCCTTTTTCC---------------------------------------------------
T ss_pred             HHhEeECCCCCEEEecccchhhccccccc---------------------------------------------------
Confidence            99999999999999999998543321100                                                   


Q ss_pred             ccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCCC-ChHHH
Q 010140          327 REQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKGE-NNEKT  405 (517)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~~-~~~~~  405 (517)
                                             .........||+.|+|||.+.+..++.++|||||||++|||++|..||... +..+.
T Consensus       187 -----------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~  243 (311)
T d1r0pa_         187 -----------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI  243 (311)
T ss_dssp             -----------------------CTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------C
T ss_pred             -----------------------cceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHH
Confidence                                   011123346999999999999999999999999999999999977776654 34445


Q ss_pred             HHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcC
Q 010140          406 LINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRH  461 (517)
Q Consensus       406 ~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~h  461 (517)
                      ...+..+.... . ....      ..++.+||.+||+.||++||++.    |+++|
T Consensus       244 ~~~i~~g~~~~-~-p~~~------~~~l~~li~~cl~~dP~~RPs~~----ei~~~  287 (311)
T d1r0pa_         244 TVYLLQGRRLL-Q-PEYC------PDPLYEVMLKCWHPKAEMRPSFS----ELVSR  287 (311)
T ss_dssp             HHHHHTTCCCC-C-CTTC------CHHHHHHHHHHTCSSGGGSCCHH----HHHHH
T ss_pred             HHHHHcCCCCC-C-cccC------cHHHHHHHHHHcCCCHhHCcCHH----HHHHH
Confidence            55555543221 1 1111      22589999999999999999997    77776

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-49  Score=388.06  Aligned_cols=264  Identities=20%  Similarity=0.260  Sum_probs=193.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-cceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-PTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-v~l~~~~~~~~  162 (517)
                      ++|++++.||+|+||.||+|+++.     +++.||||++...     ....++.+|+++++.++|+|+ +.+.+++.+++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~-----~~~~vAvK~~~~~-----~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~   76 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIA-----AGEEVAIKLECVK-----TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGD   76 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETT-----TTEEEEEEEEESC-----TTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETT
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECC-----CCCEEEEEEEchh-----ccCHHHHHHHHHHHHccCCCcccEEEEEEecCC
Confidence            579999999999999999999886     6789999998754     223456779999999977664 55566678888


Q ss_pred             eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCcee
Q 010140          163 YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIVY  242 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~iiH  242 (517)
                      ..++||||| +|+|...+.... ..++...                            +..++.||+.||+|||++||||
T Consensus        77 ~~~ivme~~-~~~l~~~~~~~~-~~~~~~~----------------------------~~~~~~qi~~~l~~lH~~~iiH  126 (299)
T d1ckia_          77 YNVMVMELL-GPSLEDLFNFCS-RKFSLKT----------------------------VLLLADQMISRIEYIHSKNFIH  126 (299)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHH----------------------------HHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEEEEEEEc-CCchhhhhhhcc-CCCcHHH----------------------------HHHHHHHHHHHHHHHHHCCeee
Confidence            999999999 677777665432 2333332                            2478899999999999999999


Q ss_pred             ccCCCCceEEcc---CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccccccccccc
Q 010140          243 RDLKPENVLVRE---DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKNKKK  319 (517)
Q Consensus       243 rDLKp~NILl~~---~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                      |||||+|||++.   +..+||+|||+|+.+......                                            
T Consensus       127 rDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~--------------------------------------------  162 (299)
T d1ckia_         127 RDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH--------------------------------------------  162 (299)
T ss_dssp             SCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC--------------------------------------------
T ss_pred             ccCCHhhccccccCCCceeeeeccCcceeccccccc--------------------------------------------
Confidence            999999999863   557999999999654321110                                            


Q ss_pred             cccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCCCCC
Q 010140          320 AVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTPFKG  399 (517)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~Pf~~  399 (517)
                                                 ...........+||+.|||||++.+..++.++|||||||++|||++|..||.+
T Consensus       163 ---------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~  215 (299)
T d1ckia_         163 ---------------------------QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQG  215 (299)
T ss_dssp             ---------------------------CBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             ---------------------------cceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccc
Confidence                                       00001123456899999999999999999999999999999999999999987


Q ss_pred             CChHHHHHHHh---cCCCCCCC--CCCCCchhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcC
Q 010140          400 ENNEKTLINIL---KKPLTFPR--IGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFK  465 (517)
Q Consensus       400 ~~~~~~~~~i~---~~~~~~p~--~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~  465 (517)
                      .........+.   ......+.  ...      ..+.++.+||.+||+.||++||++. .+.++|+|+|.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~~li~~cl~~~p~~RP~~~-~i~~~l~~~~~~  279 (299)
T d1ckia_         216 LKAATKRQKYERISEKKMSTPIEVLCK------GYPSEFATYLNFCRSLRFDDKPDYS-YLRQLFRNLFHR  279 (299)
T ss_dssp             CC-------HHHHHHHHHHSCHHHHTT------TSCHHHHHHHHHHHHSCTTCCCCHH-HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhcccCCCChhHhcc------CCCHHHHHHHHHHccCChhHCcCHH-HHHHHHHHHHHH
Confidence            65543332221   11111110  000      1123589999999999999999984 345677887653

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-48  Score=380.59  Aligned_cols=256  Identities=22%  Similarity=0.291  Sum_probs=185.0

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCccceeeeeecCc-
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFLPTLYAEFEASH-  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-  162 (517)
                      .+|.+.++||+|+||.||+|+..       ++.||||+++.....    ....+.|+..+..++|||||++++++.+.+ 
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~-------g~~vAvK~~~~~~~~----~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~   71 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWR-------GEEVAVKIFSSREER----SWFREAEIYQTVMLRHENILGFIAADNKDNG   71 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-------TEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECS
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC-------CEEEEEEEECccchh----HHHHHHHHHHHhhCCCCcCcceEEEEEeCCC
Confidence            46999999999999999999864       478999999765321    112223556666789999999999987543 


Q ss_pred             ---eeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHh--
Q 010140          163 ---YSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHM--  237 (517)
Q Consensus       163 ---~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~--  237 (517)
                         .+|+|||||++|+|.+++++.   .++....                            ..++.|++.||+|||+  
T Consensus        72 ~~~~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~----------------------------~~~~~~ia~gl~~lH~~~  120 (303)
T d1vjya_          72 TWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGM----------------------------IKLALSTASGLAHLHMEI  120 (303)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHHC---CBCHHHH----------------------------HHHHHHHHHHHHHHHCCB
T ss_pred             cceEEEEEEecccCCCHHHHHhcC---CCCHHHH----------------------------HHHHHHHHHHHHHHHHhh
Confidence               689999999999999999764   2222222                            2678999999999996  


Q ss_pred             ------cCceeccCCCCceEEccCCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCccccccccc
Q 010140          238 ------MGIVYRDLKPENVLVREDGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVS  311 (517)
Q Consensus       238 ------~~iiHrDLKp~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (517)
                            +|||||||||+||||+.+|.+||+|||+++.+......                                    
T Consensus       121 ~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~------------------------------------  164 (303)
T d1vjya_         121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT------------------------------------  164 (303)
T ss_dssp             CSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTE------------------------------------
T ss_pred             hhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcc------------------------------------
Confidence                  59999999999999999999999999998654321100                                    


Q ss_pred             cccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCC------CCccchHHHHHH
Q 010140          312 HGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQG------HGSAVDWWTLGV  385 (517)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~------~~~~~DiWSlGv  385 (517)
                                                            ........+||+.|||||++.+..      ++.++|||||||
T Consensus       165 --------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gv  206 (303)
T d1vjya_         165 --------------------------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL  206 (303)
T ss_dssp             --------------------------------------ECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHH
T ss_pred             --------------------------------------eeccccceecccCcCChhhccccccccCCCcCcchhhhhhHH
Confidence                                                  011223457999999999998653      567899999999


Q ss_pred             HHHHHhhCCCCCCCCC--------------hHHHHHHHhcCCCCCCCCCCCCchhHHhhhhHHHHHHHhccCCcccccCC
Q 010140          386 FLYEMLYGTTPFKGEN--------------NEKTLINILKKPLTFPRIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGS  451 (517)
Q Consensus       386 il~elltG~~Pf~~~~--------------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~  451 (517)
                      +||||+||..||....              ...............|..... ....+....+.+||.+||+.||++|||+
T Consensus       207 vl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~  285 (303)
T d1vjya_         207 VFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTA  285 (303)
T ss_dssp             HHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGCHHHHHHHHHHHTTCCSSGGGSCCH
T ss_pred             HHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcc-cCChHHHHHHHHHHHHHcccCHhHCcCH
Confidence            9999999988874321              222333333322222221111 1111233458999999999999999999


Q ss_pred             CCChHHhhc
Q 010140          452 LKGSVEIKR  460 (517)
Q Consensus       452 ~~~~~ell~  460 (517)
                      .    ||++
T Consensus       286 ~----ei~~  290 (303)
T d1vjya_         286 L----RIKK  290 (303)
T ss_dssp             H----HHHH
T ss_pred             H----HHHH
Confidence            7    6654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.1e-47  Score=372.63  Aligned_cols=253  Identities=19%  Similarity=0.220  Sum_probs=193.5

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC-CCccceeeeeecC
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH-PFLPTLYAEFEAS  161 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-pnIv~l~~~~~~~  161 (517)
                      .++|+++++||+|+||+||+|++..     +++.||||++....     ....+.+|+++++.+.| +||+.+++++..+
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~-----~~~~vAvK~~~~~~-----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~   73 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLL-----NNQQVAIKFEPRRS-----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG   73 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETT-----TTEEEEEEEEECCT-----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEET
T ss_pred             CCceEEEEEEecCCCeEEEEEEECC-----CCCEEEEEEEcccc-----CcHHHHHHHHHHHHhcCCCCCCEEEEEeecC
Confidence            4689999999999999999999886     67899999986542     23445668999999965 8999999999999


Q ss_pred             ceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHHHHHHHHhcCce
Q 010140          162 HYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLLALEYLHMMGIV  241 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ii  241 (517)
                      ...|+||||| |++|.+++.... ..++....                            ..++.|++.||+|||++|||
T Consensus        74 ~~~~~vme~~-~~~l~~~~~~~~-~~~~~~~~----------------------------~~i~~q~~~~l~~lH~~gii  123 (293)
T d1csna_          74 LHNVLVIDLL-GPSLEDLLDLCG-RKFSVKTV----------------------------AMAAKQMLARVQSIHEKSLV  123 (293)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-TCCCHHHH----------------------------HHHHHHHHHHHHHHHTTTEE
T ss_pred             CccEEEEEec-CCCHHHHHHhhc-cchhhHHH----------------------------HHHHHHHHHHHHHHHHCCce
Confidence            9999999999 889999886643 23333222                            36789999999999999999


Q ss_pred             eccCCCCceEEcc-----CCcEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCCCcccccccccccccc
Q 010140          242 YRDLKPENVLVRE-----DGHIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQPVLSCFSSVSHGKKN  316 (517)
Q Consensus       242 HrDLKp~NILl~~-----~~~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                      ||||||+|||++.     ++.+||+|||+|+.+......                                         
T Consensus       124 HrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~-----------------------------------------  162 (293)
T d1csna_         124 YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK-----------------------------------------  162 (293)
T ss_dssp             CCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC-----------------------------------------
T ss_pred             eccCCccceeecCcccccCCceEEcccceeEEcccCccc-----------------------------------------
Confidence            9999999999974     578999999999654321100                                         


Q ss_pred             ccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHHHHHHHHHHHhhCCCC
Q 010140          317 KKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGTTP  396 (517)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiWSlGvil~elltG~~P  396 (517)
                                                    ..........++||+.|||||++.+..++.++|||||||++|||++|..|
T Consensus       163 ------------------------------~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~P  212 (293)
T d1csna_         163 ------------------------------QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLP  212 (293)
T ss_dssp             ------------------------------CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             ------------------------------cceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCc
Confidence                                          00001123456899999999999999999999999999999999999999


Q ss_pred             CCCCCh---HHHHHHHhcCCCCCC--CCCCCCchhHHhhhhHHHHHHHhccCCcccccCCC
Q 010140          397 FKGENN---EKTLINILKKPLTFP--RIGVSSSKEFEEVVKLQDLISKLLVKNPKKRIGSL  452 (517)
Q Consensus       397 f~~~~~---~~~~~~i~~~~~~~p--~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R~t~~  452 (517)
                      |.+...   ...+.++.......+  ....      ..+.++.+|+..|+..+|++||+..
T Consensus       213 f~~~~~~~~~~~~~~i~~~~~~~~~~~l~~------~~p~~l~~ii~~~~~~~~~~rP~y~  267 (293)
T d1csna_         213 WQGLKAATNKQKYERIGEKKQSTPLRELCA------GFPEEFYKYMHYARNLAFDATPDYD  267 (293)
T ss_dssp             TSSCCSCCHHHHHHHHHHHHHHSCHHHHTT------TSCHHHHHHHHHHHHCCTTCCCCHH
T ss_pred             CCCccchhHHHHHHHHHhccCCCChHHhcC------CCCHHHHHHHHHHhcCCcccCcCHH
Confidence            986543   233333322111111  0000      1123589999999999999999864

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-45  Score=370.97  Aligned_cols=265  Identities=23%  Similarity=0.369  Sum_probs=190.2

Q ss_pred             CCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-----------CCCc
Q 010140           83 LDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-----------HPFL  151 (517)
Q Consensus        83 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-----------HpnI  151 (517)
                      .++|+++++||+|+||+||+|+++.     +++.||||+++++...    .+...+|+.+|+.++           |+||
T Consensus        12 ~~rY~i~~~LG~G~fg~Vy~~~~~~-----~g~~vAvKvi~~~~~~----~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~i   82 (362)
T d1q8ya_          12 DARYILVRKLGWGHFSTVWLAKDMV-----NNTHVAMKIVRGDKVY----TEAAEDEIKLLQRVNDADNTKEDSMGANHI   82 (362)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETT-----TTEEEEEEEECSCHHH----HHHHHHHHHHHHHHHHTCCSHHHHHHHTTB
T ss_pred             CCcEEEEEEEeeCCCeEEEEEEECC-----CCCEEEEEEEeccccc----hHHHHHHHHHHHHhcchhhhhhhhcCcCce
Confidence            3569999999999999999999987     6899999999876432    234556888887774           5789


Q ss_pred             cceeeeeec--CceeEEEEEecCCCchhHH-HHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHH
Q 010140          152 PTLYAEFEA--SHYSCLVMEYCPGGDLYAA-RQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAET  228 (517)
Q Consensus       152 v~l~~~~~~--~~~~~lV~E~~~gg~L~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi  228 (517)
                      +++++++..  ....+++|+++..+..... ........+.+.                            .++.++.||
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~i~~i~~qi  134 (362)
T d1q8ya_          83 LKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLI----------------------------YVKQISKQL  134 (362)
T ss_dssp             CCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHH----------------------------HHHHHHHHH
T ss_pred             EEEEEEeeeccccceeeeeeecccccccccccccccccCCcHH----------------------------HHHHHHHHH
Confidence            999998864  4567778877766554333 233322333322                            335788999


Q ss_pred             HHHHHHHHh-cCceeccCCCCceEEccCC------cEEeccCCCcccccccccccCCcchHHHHhhhcccCCCCCCCCCC
Q 010140          229 LLALEYLHM-MGIVYRDLKPENVLVREDG------HIMLSDFDLSFKCDVVPKLLRPKLSFEAIEKYEKCSIPSCATPMQ  301 (517)
Q Consensus       229 ~~aL~yLH~-~~iiHrDLKp~NILl~~~~------~vkL~DFGls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (517)
                      +.||+|||+ +||+||||||+||||+.++      .++++|||.|....                               
T Consensus       135 l~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~-------------------------------  183 (362)
T d1q8ya_         135 LLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD-------------------------------  183 (362)
T ss_dssp             HHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT-------------------------------
T ss_pred             HHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccc-------------------------------
Confidence            999999998 8999999999999998665      49999999984321                               


Q ss_pred             CccccccccccccccccccccccccccccCCCCCCccccCCccccccccccCCcccCCCCCcccchhhcCCCCCccchHH
Q 010140          302 PVLSCFSSVSHGKKNKKKAVTVTTIREQVDGDHHDQELLDDPEVVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWW  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~DiW  381 (517)
                                                                        ......+||+.|+|||++.+..|+.++|||
T Consensus       184 --------------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  213 (362)
T d1q8ya_         184 --------------------------------------------------EHYTNSIQTREYRSPEVLLGAPWGCGADIW  213 (362)
T ss_dssp             --------------------------------------------------BCCCSCCSCGGGCCHHHHHTCCCCTHHHHH
T ss_pred             --------------------------------------------------cccccccccccccChhhccccCCCcccccc
Confidence                                                              112345799999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCh------HHHHHHHh---cCC-----------------C----CCCCCCCCCc-------
Q 010140          382 TLGVFLYEMLYGTTPFKGENN------EKTLINIL---KKP-----------------L----TFPRIGVSSS-------  424 (517)
Q Consensus       382 SlGvil~elltG~~Pf~~~~~------~~~~~~i~---~~~-----------------~----~~p~~~~~~~-------  424 (517)
                      |+||++++|++|+.||.....      .+.+....   ...                 .    ..........       
T Consensus       214 SlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (362)
T d1q8ya_         214 STACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEK  293 (362)
T ss_dssp             HHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHT
T ss_pred             chHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccc
Confidence            999999999999999975432      11111111   100                 0    0000000000       


Q ss_pred             --hhHHhhhhHHHHHHHhccCCcccccCCCCChHHhhcCCCcCCCCc
Q 010140          425 --KEFEEVVKLQDLISKLLVKNPKKRIGSLKGSVEIKRHEFFKGINW  469 (517)
Q Consensus       425 --~~~~~~~~l~dLi~~~L~~dP~~R~t~~~~~~ell~hp~f~~~~~  469 (517)
                        .......++.|||.+||++||.+|||+.    |+|+||||+++.+
T Consensus       294 ~~~~~~~~~~~~dll~~mL~~dP~~Rpta~----e~L~Hp~f~~~~~  336 (362)
T d1q8ya_         294 YKFSKDEAKEISDFLSPMLQLDPRKRADAG----GLVNHPWLKDTLG  336 (362)
T ss_dssp             TCCCHHHHHHHHHHHGGGGCSSTTTCBCHH----HHHTCGGGTTCTT
T ss_pred             cccCcccCHHHHHHHHHHCCCChhHCcCHH----HHhcCcccCCCCC
Confidence              0012345789999999999999999998    9999999996543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=1.4e-26  Score=209.94  Aligned_cols=135  Identities=24%  Similarity=0.242  Sum_probs=102.7

Q ss_pred             ceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHH---------------HHHHHhHHHHHHHHHHhcCCCC
Q 010140           86 FRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALA---------------IRKKLHRADMEKVILTMLDHPF  150 (517)
Q Consensus        86 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~---------------~~~~~~~~~~E~~il~~l~Hpn  150 (517)
                      +.++++||+|+||+||+|++.      +++.||||+++.....               ..........|...+.++.|++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~------~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~   75 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE------KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLA   75 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET------TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             chhCCEeeeCcceEEEEEECC------CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            468999999999999999875      4678999987532211               0111233456888999999999


Q ss_pred             ccceeeeeecCceeEEEEEecCCCchhHHHHhCCCCccCccchhhhhhhhhhhhhcCCccccccchhhhhhhHHHHHHHH
Q 010140          151 LPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTLFFNYRFYAAETLL  230 (517)
Q Consensus       151 Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  230 (517)
                      ++..+++..    .++||||++++.+.+         +.....                            +.++.||+.
T Consensus        76 v~~~~~~~~----~~lvme~~~~~~~~~---------l~~~~~----------------------------~~i~~ql~~  114 (191)
T d1zara2          76 VPKVYAWEG----NAVLMELIDAKELYR---------VRVENP----------------------------DEVLDMILE  114 (191)
T ss_dssp             SCCEEEEET----TEEEEECCCCEEGGG---------CCCSCH----------------------------HHHHHHHHH
T ss_pred             cceEEEecC----CEEEEEeeccccccc---------hhhHHH----------------------------HHHHHHHHH
Confidence            999887632    379999998766532         222222                            367899999


Q ss_pred             HHHHHHhcCceeccCCCCceEEccCCcEEeccCCCccc
Q 010140          231 ALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSFK  268 (517)
Q Consensus       231 aL~yLH~~~iiHrDLKp~NILl~~~~~vkL~DFGls~~  268 (517)
                      ||+|||++||+||||||+|||+++++ ++|+|||+|..
T Consensus       115 ~l~~lH~~giiHrDiKP~NILv~~~~-~~liDFG~a~~  151 (191)
T d1zara2         115 EVAKFYHRGIVHGDLSQYNVLVSEEG-IWIIDFPQSVE  151 (191)
T ss_dssp             HHHHHHHTTEECSCCSTTSEEEETTE-EEECCCTTCEE
T ss_pred             HHHHHhhCCEEEccCChhheeeeCCC-EEEEECCCccc
Confidence            99999999999999999999998654 89999999844

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.54  E-value=1.5e-07  Score=87.22  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeeeecCc
Q 010140           84 DHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEFEASH  162 (517)
Q Consensus        84 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~~~  162 (517)
                      ..|++.+..+.|+.+.||++...       ++.+.+|+......   .....+.+|..++..+. +--+.+++.+..+++
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~~-------~~~~vlk~~~~~~~---~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~   83 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVGE-------NENLYLKMTDSRYK---GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG   83 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEECS-------SCEEEEEEECGGGT---TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred             hceEEEEcCCCCCCCcEEEEEeC-------CCeEEEEEcCCCcc---cchhhHHHHHHHHHHHhccCCCCcEEEEEecCC
Confidence            56888887766667899988633       35678888765421   22334566888888774 434678888888889


Q ss_pred             eeEEEEEecCCCchhHH
Q 010140          163 YSCLVMEYCPGGDLYAA  179 (517)
Q Consensus       163 ~~~lV~E~~~gg~L~~~  179 (517)
                      ..|+||++++|.++...
T Consensus        84 ~~~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          84 WSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEEEEECCSSEEHHHH
T ss_pred             ceEEEEEeccccccccc
Confidence            99999999999877543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.16  E-value=2.3e-06  Score=78.53  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             CceEEeeeeccc-eeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCC--CCccceeeeeecC
Q 010140           85 HFRLLRRLGSGD-IGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDH--PFLPTLYAEFEAS  161 (517)
Q Consensus        85 ~y~i~~~LG~G~-fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~H--pnIv~l~~~~~~~  161 (517)
                      .+++.. +..|. -+.||++....      +..+.+|......      ...+..|...|+.+..  -.+.+++.+..++
T Consensus        12 g~~~~~-~~~G~s~~~v~r~~~~~------~~~~vlK~~~~~~------~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~   78 (255)
T d1nd4a_          12 GYDWAQ-QTIGCSDAAVFRLSAQG------RPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEA   78 (255)
T ss_dssp             TCEEEE-CSCTTSSCEEEEEECTT------SCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECS
T ss_pred             CCceEE-cCCcccCCeEEEEEeCC------CCEEEEEeCCccC------HhHHHHHHHHHHHHHhcCCCCCceeeecccc
Confidence            445443 34444 46899887543      4568889876442      2345568888887743  3367788888888


Q ss_pred             ceeEEEEEecCCCchh
Q 010140          162 HYSCLVMEYCPGGDLY  177 (517)
Q Consensus       162 ~~~~lV~E~~~gg~L~  177 (517)
                      +..++|||+++|.++.
T Consensus        79 ~~~~~v~~~i~G~~~~   94 (255)
T d1nd4a_          79 GRDWLLLGEVPGQDLL   94 (255)
T ss_dssp             SCEEEEEECCSSEETT
T ss_pred             cceEEEEEeeeccccc
Confidence            8999999999987663

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=2e-05  Score=77.18  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=50.2

Q ss_pred             EEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHH----HHHhHHHHHHHHHHhcC-C--CCccceeeeeec
Q 010140           88 LLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIR----KKLHRADMEKVILTMLD-H--PFLPTLYAEFEA  160 (517)
Q Consensus        88 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~----~~~~~~~~E~~il~~l~-H--pnIv~l~~~~~~  160 (517)
                      -.+.||.|....||++....     .++.++||.-........    ....+...|...|+.+. +  ..+++++.+  +
T Consensus        30 ~~~eig~G~~N~vfrV~~~~-----~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d  102 (392)
T d2pula1          30 TCQEIGDGNLNYVFHIYDQE-----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--D  102 (392)
T ss_dssp             EEEECCSSSSEEEEEEEC---------CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--E
T ss_pred             eEEEeCCCceEeEEEEEeCC-----CCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--c
Confidence            36679999999999998654     456788886432110000    12344556888887762 2  346666654  3


Q ss_pred             CceeEEEEEecCCCch
Q 010140          161 SHYSCLVMEYCPGGDL  176 (517)
Q Consensus       161 ~~~~~lV~E~~~gg~L  176 (517)
                      ....++|||++.+..+
T Consensus       103 ~~~~~lvmE~L~~~~~  118 (392)
T d2pula1         103 TEMAVTVMEDLSHLKI  118 (392)
T ss_dssp             TTTTEEEECCCTTSEE
T ss_pred             CCCCEEEEeccCCccc
Confidence            4456799999977654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.36  E-value=0.0003  Score=68.51  Aligned_cols=85  Identities=25%  Similarity=0.369  Sum_probs=54.8

Q ss_pred             CCCCceEEeeeeccceeEEEEEEEecCCCC--CCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcC-CCCccceeeee
Q 010140           82 GLDHFRLLRRLGSGDIGNVYLCQIRNPMVG--LPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLD-HPFLPTLYAEF  158 (517)
Q Consensus        82 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~--~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~  158 (517)
                      ..+++++ +.|+.|-.-.+|++........  ...+.|.+++.-....     .....+|..+++.+. +.-..++++++
T Consensus        41 ~~~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~-----~idr~~E~~i~~~ls~~gl~Pkll~~~  114 (395)
T d1nw1a_          41 PLEHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET-----ESHLVAESVIFTLLSERHLGPKLYGIF  114 (395)
T ss_dssp             CGGGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC-----HHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             CccceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch-----hhHHHHHHHHHHHHHhCCCCCeEEEEc
Confidence            3455655 5788888889999987653211  1345577777642211     112345888888884 54456888887


Q ss_pred             ecCceeEEEEEecCCCch
Q 010140          159 EASHYSCLVMEYCPGGDL  176 (517)
Q Consensus       159 ~~~~~~~lV~E~~~gg~L  176 (517)
                      .+    .+||||++|..|
T Consensus       115 ~~----g~I~efi~g~~l  128 (395)
T d1nw1a_         115 SG----GRLEEYIPSRPL  128 (395)
T ss_dssp             TT----EEEECCCCEEEC
T ss_pred             CC----ceEEEEeccccC
Confidence            64    589999988655

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0024  Score=60.04  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=43.3

Q ss_pred             eeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCCCc-----ccee--eeeecCceeEEEEE
Q 010140           97 IGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHPFL-----PTLY--AEFEASHYSCLVME  169 (517)
Q Consensus        97 fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~--~~~~~~~~~~lV~E  169 (517)
                      --.||+++..      .+..|++|+.+....    ....+..|...|..|....|     +..-  ..+..++..+.|++
T Consensus        35 EN~vy~v~~~------dg~~~VlK~~rp~~~----s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~  104 (325)
T d1zyla1          35 ENRVYQFQDE------DRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFP  104 (325)
T ss_dssp             SSEEEEECCT------TCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEE
T ss_pred             cceeEEEEcC------CCCEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEe
Confidence            3589999765      357799999875421    22334558887777742222     1211  13345677899999


Q ss_pred             ecCCCch
Q 010140          170 YCPGGDL  176 (517)
Q Consensus       170 ~~~gg~L  176 (517)
                      +++|..+
T Consensus       105 ~~~G~~~  111 (325)
T d1zyla1         105 SVGGRQF  111 (325)
T ss_dssp             CCCCEEC
T ss_pred             ecCCcCC
Confidence            9977443

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.00  E-value=0.003  Score=58.93  Aligned_cols=170  Identities=13%  Similarity=0.017  Sum_probs=81.3

Q ss_pred             cCCCCceEEeeeeccceeEEEEEEEecCCCCCCCceeeeeecchHHHHHHHHHhHHHHHHHHHHhcCCC-----Ccccee
Q 010140           81 VGLDHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRKKLHRADMEKVILTMLDHP-----FLPTLY  155 (517)
Q Consensus        81 ~~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~Hp-----nIv~l~  155 (517)
                      ..++...-.+.|..|---+.|+++..+       ..|++|+.....     ....+..|..+|..|...     ..+...
T Consensus        15 Y~lg~~~~~~~i~~G~~N~ny~v~t~~-------g~yVLri~~~~~-----~~~~l~~~~~~l~~L~~~g~pvp~pi~~~   82 (316)
T d2ppqa1          15 YDVGSLTSYKGIAEGVENSNFLLHTTK-------DPLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCPLPLPRK   82 (316)
T ss_dssp             BCCCCEEEEEEECC---EEEEEEEESS-------CCEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBT
T ss_pred             CCCCCceEeecCCCCcccCeEEEEECC-------CcEEEEEcCCCC-----CHHHHHHHHHHHHhhhhccccccccceec
Confidence            455666667777788878899987543       459999986541     223444577777777432     222211


Q ss_pred             e---eeecCceeEEEEEecCCCchhH--------------HHHhCC-CCccCccchhhhhhhhhhhhhcCCccccccchh
Q 010140          156 A---EFEASHYSCLVMEYCPGGDLYA--------------ARQRQP-GKRFGISSAKFVFFLLFFFFYNNLGFVHTDVTL  217 (517)
Q Consensus       156 ~---~~~~~~~~~lV~E~~~gg~L~~--------------~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (517)
                      +   +..-....+.++.++.|.....              .+.... .............+.......    ........
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (316)
T d2ppqa1          83 DGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDK----SEERADEV  158 (316)
T ss_dssp             TCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHH----HGGGGGGT
T ss_pred             CCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhH----HHHhhhhc
Confidence            1   1223455677777776643321              010000 000000000000000000000    00000000


Q ss_pred             hhhhhHHHHHHHHHHHHHHh----cCceeccCCCCceEEccCCcEEeccCCCc
Q 010140          218 FFNYRFYAAETLLALEYLHM----MGIVYRDLKPENVLVREDGHIMLSDFDLS  266 (517)
Q Consensus       218 ~~~~~~~~~qi~~aL~yLH~----~~iiHrDLKp~NILl~~~~~vkL~DFGls  266 (517)
                      .......+..+...+.-.+.    .|+||+|+.++||+++.+...-|+||+.+
T Consensus       159 ~~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~  211 (316)
T d2ppqa1         159 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFA  211 (316)
T ss_dssp             STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTC
T ss_pred             chhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEeccccc
Confidence            11112222333333333332    47999999999999998877789999987