Citrus Sinensis ID: 010145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 517 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H157 | 585 | Nitrate transporter 1.2 O | yes | no | 0.990 | 0.875 | 0.673 | 0.0 | |
| Q9FM20 | 589 | Probable peptide/nitrate | no | no | 0.945 | 0.830 | 0.646 | 0.0 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.970 | 0.885 | 0.656 | 0.0 | |
| Q93VV5 | 591 | Probable peptide/nitrate | no | no | 0.955 | 0.835 | 0.403 | 1e-100 | |
| Q9LSE8 | 521 | Putative peptide/nitrate | no | no | 0.887 | 0.880 | 0.408 | 3e-99 | |
| Q9LSF0 | 515 | Probable peptide/nitrate | no | no | 0.866 | 0.869 | 0.397 | 2e-98 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.957 | 0.846 | 0.369 | 3e-96 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.945 | 0.857 | 0.369 | 2e-91 | |
| Q56XQ6 | 601 | Probable peptide/nitrate | no | no | 0.940 | 0.808 | 0.386 | 8e-91 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.949 | 0.861 | 0.351 | 2e-87 |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/526 (67%), Positives = 427/526 (81%), Gaps = 14/526 (2%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH SPS SAN VTNFMGTAFLLAL GGFL+DAFF+T++I++ISA+IEF+GL++LT+QA T
Sbjct: 61 MHMSPSKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQART 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SL PP+C +C E G KA MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T
Sbjct: 121 PSLMPPSC----DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPK 176
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST I +SI IFL GS F
Sbjct: 177 GRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRF 236
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKE 238
YRNKIP GSPLTTI KVL AA C S +SSNAV + SP+ C ++ + E S +
Sbjct: 237 YRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGEL 296
Query: 239 KVPSQKP--------TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIM 290
+ P Q+ T +K LN A P + +++CTV++VE+VKIV+K+ PIF TIM
Sbjct: 297 EKPRQEEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIM 356
Query: 291 LNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVT 350
LNCCLAQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK T
Sbjct: 357 LNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKAT 416
Query: 351 KTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQY 410
KTE G+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E LP+TFLW+ALQY
Sbjct: 417 KTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQY 476
Query: 411 LFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR 470
LFLGSADLFTLAG++E+FFT+AP SMRSLATSLSWASLAMGYY S+V+VSIVN+IT +
Sbjct: 477 LFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGSSG 536
Query: 471 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
+TPWL G ++N Y L+ FYWLMC+L NFLH+LFWA RYKY STG
Sbjct: 537 NTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582
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Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/520 (64%), Positives = 400/520 (76%), Gaps = 31/520 (5%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
M FSPS +AN VT FMGTAF LAL GGFLADAFFTT+ IY++SAAIEF+GL++LTVQAH
Sbjct: 92 MGFSPSGAANAVTAFMGTAFFLALLGGFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHE 151
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
S +P + V LF GLY+VALGVGGIKGSL PHGAEQ+DE T
Sbjct: 152 HSTEPWS-----------------RVFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSS 194
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GR+QRS FFNY++F LSCGALIAVT VVW+EDNKGW +GFG+STA IL+S+P+FL GS
Sbjct: 195 GRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRV 254
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YR K+P+GSP+TT+FKVLTAA++ K + +S V H+ C ++S + N + +
Sbjct: 255 YRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGF 313
Query: 241 PSQKPTEDIKFLNRALRNNPAYPI-VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS 299
FL +R + P ++CT ++V++VKIV+KI PIFMSTIMLNCCLAQLS
Sbjct: 314 LGS-------FLGEVVRERESLPRPLRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLS 366
Query: 300 TFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 359
TFSVQQA+TMNTKLGS VPPA+LPVFPV+F++ILAP YNH+++P ARK TKTE GITHL
Sbjct: 367 TFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHL 426
Query: 360 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-----PLPITFLWVALQYLFLG 414
QRIGTGL+LSIVAMAVAALVE KRK V V+ N+S PLPITFLWVA+QY+FLG
Sbjct: 427 QRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLG 486
Query: 415 SADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 474
SADLFTLAGMMEFFFT+AP +MRSLATSLSWASLAMGYYFS+VLVS VN +T H PW
Sbjct: 487 SADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPW 546
Query: 475 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 514
L G NLN YHLERFYWLMC+L G+NFLH+LFWA+RY Y S
Sbjct: 547 LLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRYVYRS 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/516 (65%), Positives = 403/516 (78%), Gaps = 14/516 (2%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH S + S++ VT FM TAFLLAL GGFLADAFF+T+ I++ISA+IEF+GL+LLT+QA
Sbjct: 63 MHMSLARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARR 122
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SL PP C + C G KA LF GLY+V+LG+GGIKGSL HGAEQ+DE T
Sbjct: 123 PSLMPPPCKSSAAL-RCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPK 181
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I LSI +FLLGS F
Sbjct: 182 GRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRF 241
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
Y+NKIP GSPLTTIFKVL AA +C SK SSN T E S +EK
Sbjct: 242 YKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFTS------------REVQSEHEEKT 289
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
PSQ T + LN+A+ + ++CTV++VE+VKIV+K+ PIF TIMLNCCLAQLST
Sbjct: 290 PSQSLTNSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLST 349
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
+SV QAATMN K+ + VP ASLPVFPV+F+LILAP Y+H+IIPFARKVTK+E+GITHLQ
Sbjct: 350 YSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQ 409
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIG GL+LSIVAMAVAALVE+KRK+VA +GL++S E LPITFLW+ALQYLFLGSADLFT
Sbjct: 410 RIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFT 469
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAG++EFFFT+AP SMRSLATSLSWASLA+GYY S+V+V IVN +T + +PWL G L
Sbjct: 470 LAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKL 528
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
N L+ FYWLMC+L +NFLH+LFWA RYKY STG
Sbjct: 529 NRNRLDLFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 211/523 (40%), Positives = 306/523 (58%), Gaps = 29/523 (5%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHF S +ANIVTNF+GT F+ AL GG+L+DAF ++ +I +E G +LL+VQAH
Sbjct: 77 MHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHL 136
Query: 61 RSLKPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 119
LKPP C L D +C E +G KA++ F LY+VALG G +K ++ HGA+Q+ ++
Sbjct: 137 PQLKPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHP 194
Query: 120 LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 179
K+ S++FN F S G LIA+T +VW++ + G GFG+S A + + I + G+
Sbjct: 195 KQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTM 254
Query: 180 FYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK 239
++RNK P S T I V+ AAI K K +S S P + N V
Sbjct: 255 YFRNKRPRRSIFTPIAHVIVAAIL---KRKLAS------PSDPRMLHGDHHVANDVVPSS 305
Query: 240 VPSQKPTEDIKFLNRAL-----RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCC 294
P +FL++A N P CTV +VE+VK ++ + PIF STI+ N
Sbjct: 306 TLPHTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTI 363
Query: 295 LAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTE 353
LAQL TFSVQQ ++MNT+L S +PPASL P I ++ L P+Y+ ++PFARK+T
Sbjct: 364 LAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHN 423
Query: 354 MGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFL 413
GI L RIG GL LS +M AA++E KR+ +V G + ++ W+ Q+L
Sbjct: 424 SGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LSIFWITPQFLIF 476
Query: 414 GSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP 473
G +++FT G++EFF+ + M S +L++ S + G+YFS+VLVS+VN ITST +
Sbjct: 477 GISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSK 536
Query: 474 -WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 515
WL ++LN L+ FYWL+ +L LNFL +LFW +R+ S+
Sbjct: 537 GWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFW-SRWNIKSS 578
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 211/516 (40%), Positives = 303/516 (58%), Gaps = 57/516 (11%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH++P+++AN+VTNFMGT+FLL LFGGF+AD+F T + +++ IE MGL+LLT QAH
Sbjct: 57 MHYTPATAANMVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVFCCIELMGLILLTFQAHN 116
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
L P +D S + + +LF GLY +A+G GG+K SL HG +Q D
Sbjct: 117 PKLLPE----KDKTPSTLQ-----SAILFTGLYAMAIGTGGLKASLPSHGGDQIDR---- 163
Query: 121 GRKQR--SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGS 178
R R S FF++ F + G L+AVT V+WIE+ KGW W F IS + ++ IF +G
Sbjct: 164 -RNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFTVGL 222
Query: 179 PFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKE 238
PFYR K P GSPL I V+ +A +++N S+ E+ S + NS+ K
Sbjct: 223 PFYRFKRPNGSPLKKIAIVIISA----ARNRNKSDLDEEMMRGLI----SIYKNNSHNK- 273
Query: 239 KVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298
+K++++A N + EVEE + + + PIF STI+++CC+AQL
Sbjct: 274 ----------LKWIDKATLNK------NISETEVEETRTFLGLLPIFGSTIVMSCCVAQL 317
Query: 299 STFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV---TKTEM 354
STFS QQ MN KL S ++P SL P+IF+L+ P+Y F +K+
Sbjct: 318 STFSAQQGMLMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF----FGKKISSGNNNRS 373
Query: 355 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLG 414
+L+RIG GL LS V+MAV+A+VE KRK V++ I+ LW+ QYL L
Sbjct: 374 SSFNLKRIGLGLALSSVSMAVSAIVEAKRKHEVVHNN-------FRISVLWLVFQYLMLS 426
Query: 415 SADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 474
+D+ TL GM+EFF+ +AP +M+S++T+L W S A+G++ ST LV + N +T H W
Sbjct: 427 VSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTALGFFLSTTLVEVTNAVTGRLGH-QW 485
Query: 475 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510
L G +LN LE FY L+C+L LN L+++FWA RY
Sbjct: 486 LGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWAKRY 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 303/521 (58%), Gaps = 73/521 (14%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
M++S +A +VTNF+GT+FLL +FGGF+AD+F T + +V+ +IE +GL++LT+QAH
Sbjct: 57 MNYSTPKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLFGSIELLGLIMLTLQAHI 116
Query: 61 RSLKPPTCVLEDGIASCREDEGGK------AVMLFAGLYIVALGVGGIKGSLAPHGAEQY 114
L+P +GGK + +LF GLY +A+GVGG+KGSL HG +Q
Sbjct: 117 TKLQP---------------QGGKKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGDQI 161
Query: 115 DETTQLGRKQR--SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 172
R QR S FFN+Y F + G +AVT +VWIE+N GW F ISTA + +I
Sbjct: 162 GT-----RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIF 216
Query: 173 IFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEG 232
+F+ G P YR K P GSPLT I V +A N + + VT+ H+S S
Sbjct: 217 VFVAGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHH---- 272
Query: 233 NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLN 292
KFLN+A NN + + +VEE + + + PIF STI++N
Sbjct: 273 --------------NKFKFLNKAKLNN------KISATQVEETRTFLALLPIFGSTIIMN 312
Query: 293 CCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV-T 350
CC+AQ+ TFSVQQ N KL S ++P ASL P++ +L +Y F +++ +
Sbjct: 313 CCVAQMGTFSVQQGMVTNRKLSRSFEIPVASLNAIPLLCMLSSLALYE----LFGKRILS 368
Query: 351 KTEMGIT-HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQ 409
+E + +L+RIG GL L+ ++MAVAA+VE+KRK AV++ + I+ W+ LQ
Sbjct: 369 NSERSSSFNLKRIGYGLALTSISMAVAAIVEVKRKHEAVHNN-------IKISVFWLELQ 421
Query: 410 YLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY 469
++ L +D+ T+ GM+EFFF ++P SMRS++T+L W S AMG++ S+VLV +VN IT
Sbjct: 422 FVMLSLSDMLTVGGMLEFFFRESPASMRSMSTALGWCSTAMGFFLSSVLVEVVNGITGWL 481
Query: 470 RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510
R +LN LE FY ++C+L LN +++FWA RY
Sbjct: 482 R-------DDLNESRLELFYLVLCVLNTLNLFNYIFWAKRY 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/519 (36%), Positives = 306/519 (58%), Gaps = 24/519 (4%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
+H S+A VT + GT +L L G LADA++ Y + I F+G+ LT+ A
Sbjct: 77 LHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASV 136
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
+LKP C+ + C + M F GLY++ALG GGIK ++ GA+Q+D+T
Sbjct: 137 PALKPAECIGD----FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSR 192
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
R ++++FFN++ F ++ GAL++ + +VWI++N+GW GFGI T + L+I F G+P
Sbjct: 193 ERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPL 252
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YR + P GSP+T I +V+ A+ + SS V E T E++D+ ++ +
Sbjct: 253 YRFQKPGGSPITRISQVVVASF------RKSSVKVPE---DATLLYETQDKNSAIAGSR- 302
Query: 241 PSQKPTEDIKFLNRAL--------RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLN 292
+ T+D ++L++A + + CTV +VEE+KI++++FPI+ S I+ +
Sbjct: 303 -KIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFS 361
Query: 293 CCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKT 352
AQ+ST VQQ MN K+GS ++PPA+L F ++I P+Y+ I+P ARK T
Sbjct: 362 AVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGV 421
Query: 353 EMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLF 412
+ G T +QR+G GL +S++ MA AA+VEI R +A + GLV S P+PI+ LW QY
Sbjct: 422 DKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFI 481
Query: 413 LGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT 472
LG+A++F G +EFF+ +P +MRSL ++L+ + A+G Y S++++++V T+
Sbjct: 482 LGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQE 541
Query: 473 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511
W+ NLN HL+ F+WL+ L +N + F AARYK
Sbjct: 542 GWI-SDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYK 579
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/520 (36%), Positives = 298/520 (57%), Gaps = 31/520 (5%)
Query: 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 65
+++AN VTN+ GT ++ L G F+ADA+ Y I G+ LLT+ A LKP
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 66 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 125
C + +C + AV F LY++ALG GGIK ++ GA+Q+DE + + ++
Sbjct: 125 GNCNAD----TCHPNSSQTAV-FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKK 179
Query: 126 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 185
S+FFN++ F ++ GALIA T +VWI+ N GW WGFG+ T +++++ F GS FYR +
Sbjct: 180 SSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQR 239
Query: 186 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHS--SPTCSNESRDEGNSNVKEKVPSQ 243
P GSPLT IF+V+ AA + S V E S T +ES +G+ +
Sbjct: 240 PGGSPLTRIFQVIVAAF------RKISVKVPEDKSLLFETADDESNIKGSRKLVH----- 288
Query: 244 KPTEDIKFLNRA--------LRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL 295
T+++KF ++A +++ P C+V +VEE+K ++ + P++ + I+
Sbjct: 289 --TDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 296 AQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 354
+Q+ST V Q TM+ +G + ++P ASL +F + +L PVY+ IIP ARK T+ E
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNER 406
Query: 355 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLG 414
G T LQR+G GL++SI AM A ++E+ R V + + + ++ W QYL +G
Sbjct: 407 GFTQLQRMGIGLVVSIFAMITAGVLEVVRLDY-VKTHNAYDQKQIHMSIFWQIPQYLLIG 465
Query: 415 SADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 474
A++FT G +EFF+ AP +MRSL ++LS ++A+G Y STVLV++V IT W
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGW 525
Query: 475 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 514
+ NLN HL+ F++L+ L LNFL +L+ + RYKY
Sbjct: 526 I-PDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKK 564
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 200/518 (38%), Positives = 299/518 (57%), Gaps = 32/518 (6%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHF S SAN+VTNF+GT FLL+L GGFL+D++ ++R ++ IE G +LL+VQAH
Sbjct: 74 MHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHL 133
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
L+PP C ++ C E G KA L+ L +VALG G +K ++ HGA Q+
Sbjct: 134 PELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRK--- 190
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
++ S+FFN F S G LIA+T +VW++ + G GFG+S A + + + G+ F
Sbjct: 191 DLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSF 250
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YRNK P+GS T I +V AAI T + + + VH T VK +
Sbjct: 251 YRNKPPSGSIFTPIAQVFVAAI--TKRKQICPSNPNMVHQPST--------DLVRVKPLL 300
Query: 241 PSQKPTEDIKFLNRALRNNPAY----PIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLA 296
S K +FL++A P CT+++V +VKI++ + PIF TI+ N LA
Sbjct: 301 HSNK----FRFLDKACIKTQGKAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILA 356
Query: 297 QLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 355
QL TFSVQQ ++MNT + + ++PPASL P I ++ P+Y +P ARK+T + G
Sbjct: 357 QLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSG 416
Query: 356 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS 415
I+ LQRIGTGL L+ +M AALVE KR+ + ++ ++ W+A Q+L G
Sbjct: 417 ISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNVM-------LSIFWIAPQFLIFGL 469
Query: 416 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY---RHT 472
+++FT G++EFF+ + SM+S T++++ S + G+Y S+VLVS VN +TS+
Sbjct: 470 SEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKE 529
Query: 473 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510
WL ++LN L+ FYWL+ L +NF ++LFW+ Y
Sbjct: 530 GWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/529 (35%), Positives = 291/529 (55%), Gaps = 38/529 (7%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
M+ S++ V+N+ GT + L G F+ADA+ Y I G+ LLT+ A
Sbjct: 61 MNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASV 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
L P TC E +C G A+ F LY++ALG GGIK ++ GA+Q+D+T +
Sbjct: 121 PGLTP-TCSGE----TCHATAGQTAIT-FIALYLIALGTGGIKPCVSSFGADQFDDTDEK 174
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
++ +S+FFN++ F ++ GA+IA + +VWI+ N GW WG G+ T + +++ F GS F
Sbjct: 175 EKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNF 234
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YR + P GSPLT + +V+ A+ + S + E +ES N + + +
Sbjct: 235 YRLQKPGGSPLTRMLQVIVAS------CRKSKVKIPE--------DESLLYENQDAESSI 280
Query: 241 PSQKPTEDIKFL-------------NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMS 287
+ E K L N+ + ++ + CTV +VEE+K ++++ PI+ +
Sbjct: 281 IGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKL--CTVTQVEELKALIRLLPIWAT 338
Query: 288 TIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFA 346
I+ +Q+ T V Q T++ +G + K+P ASL +F + +L APVY+ +I+PFA
Sbjct: 339 GIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFA 398
Query: 347 RKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 406
RK T E G T LQRIG GL++SI +M A ++E+ R L N E +P+T W
Sbjct: 399 RKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYN-EETIPMTIFWQ 457
Query: 407 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 466
QY +G A++FT G +EFF+ AP +MRSL ++LS ++A G Y ST LV++V +T
Sbjct: 458 VPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVT 517
Query: 467 STYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 515
+ W+ NLN+ HL+ F+WL+ L LNFL +L+ A Y Y T
Sbjct: 518 RSGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKT 565
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 517 | ||||||
| 356513553 | 590 | PREDICTED: nitrate transporter 1.2-like | 1.0 | 0.876 | 0.734 | 0.0 | |
| 356565069 | 593 | PREDICTED: nitrate transporter 1.2-like | 1.0 | 0.871 | 0.737 | 0.0 | |
| 297734029 | 610 | unnamed protein product [Vitis vinifera] | 1.0 | 0.847 | 0.758 | 0.0 | |
| 225456664 | 579 | PREDICTED: nitrate transporter 1.2-like | 1.0 | 0.892 | 0.758 | 0.0 | |
| 255540909 | 591 | nitrate transporter, putative [Ricinus c | 1.0 | 0.874 | 0.769 | 0.0 | |
| 356497845 | 772 | PREDICTED: nitrate transporter 1.2-like | 0.992 | 0.664 | 0.694 | 0.0 | |
| 356500557 | 580 | PREDICTED: nitrate transporter 1.2-like | 0.992 | 0.884 | 0.701 | 0.0 | |
| 359473379 | 616 | PREDICTED: nitrate transporter 1.2-like | 0.990 | 0.831 | 0.719 | 0.0 | |
| 224100445 | 575 | predicted protein [Populus trichocarpa] | 0.988 | 0.888 | 0.706 | 0.0 | |
| 449440756 | 618 | PREDICTED: nitrate transporter 1.2-like | 0.992 | 0.830 | 0.699 | 0.0 |
| >gi|356513553|ref|XP_003525477.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/520 (73%), Positives = 442/520 (85%), Gaps = 3/520 (0%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPS+SANIVTNFMGTAFLLA+ GGFLADAF TTY +Y+ISA IEFMGLL+LT+QAH
Sbjct: 67 MHFSPSTSANIVTNFMGTAFLLAILGGFLADAFITTYSLYLISAGIEFMGLLMLTIQAHK 126
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP CV+ + + C + G AVMLFAGLY+VALGVGGIKGSL PHGAEQ+DE T
Sbjct: 127 PSLKPPNCVIGNTDSPCDKIHGADAVMLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPE 186
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRSAFFNY+VF LSCGALIAVTFVVWIEDNKGW+WG +STA+ILLSIP+F+LGS
Sbjct: 187 GRKQRSAFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASILLSIPVFILGSHK 246
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKE 238
YR KIP GSP+T++FKVL AAI N CK+KNS+NAV + +SP+ + E D E + KE
Sbjct: 247 YRTKIPAGSPITSMFKVLVAAICNNCKAKNSTNAVRSMTTSPSHATEREDGEEESKTTKE 306
Query: 239 KVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298
V Q TE++KFLN+A+ +P+++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQL
Sbjct: 307 VVQGQTLTENLKFLNKAVMEPAVHPMLECTVKEVEEVKIVTRILPIFMSTIMLNCCLAQL 366
Query: 299 STFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITH 358
STFSVQQ+ATM+T LGS KVPPASLPVFPV+F++ILAP+YNH+I+PFARK TKTEMGITH
Sbjct: 367 STFSVQQSATMSTMLGSFKVPPASLPVFPVLFVMILAPLYNHIIVPFARKATKTEMGITH 426
Query: 359 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADL 418
LQRIGTGL LSIVAMAVAALVE KRK+ A GL++S++PLPITFLWVALQY+FLGSADL
Sbjct: 427 LQRIGTGLFLSIVAMAVAALVETKRKKTAFKFGLLDSAKPLPITFLWVALQYIFLGSADL 486
Query: 419 FTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 478
FTLAGMMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +T + HTPWL G+
Sbjct: 487 FTLAGMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVTGAFGHTPWLLGA 546
Query: 479 NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 517
NLNHYHLERFYWLMC+L GLNF+HFLFWA YKY ST P
Sbjct: 547 NLNHYHLERFYWLMCVLSGLNFVHFLFWANSYKYRCSTKP 586
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565069|ref|XP_003550767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/522 (73%), Positives = 442/522 (84%), Gaps = 5/522 (0%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPS+SANIVT+FMGTAFLLA+ GGFLADAF TTY IY+ISA IEFMGLL+LT+QAH
Sbjct: 71 MHFSPSTSANIVTDFMGTAFLLAILGGFLADAFITTYSIYLISAVIEFMGLLMLTIQAHK 130
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP CV+ + + C + GG AVMLFAGLY+VALGVGGIKGSL PHGAEQ+DE T
Sbjct: 131 PSLKPPNCVIGNTDSPCDKIHGGDAVMLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPE 190
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS+FFNY+VF LSCGALIAVTFVVWIEDNKGW+WG +STA+ILLSIP+FLLGS
Sbjct: 191 GRKQRSSFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASILLSIPVFLLGSHK 250
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKE 238
YR KIP GSP+T++FKVL AAI N CK+KNSSNAV + + P+ + E +D E + KE
Sbjct: 251 YRTKIPAGSPITSMFKVLVAAICNNCKAKNSSNAVISMTTGPSHATERKDGEEQSKTRKE 310
Query: 239 KVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298
VP Q T+++KFLN+A+ +P+++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQL
Sbjct: 311 VVPGQTLTDNLKFLNKAVMEPAVHPMLECTVKEVEEVKIVARILPIFMSTIMLNCCLAQL 370
Query: 299 STFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITH 358
STFSVQQ+ATMNT LGS KVPPASLPVFPV+FI+ILAP+YNH+I+PFARK TKTEMGITH
Sbjct: 371 STFSVQQSATMNTMLGSFKVPPASLPVFPVLFIMILAPLYNHIIVPFARKATKTEMGITH 430
Query: 359 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-PLPITFLWVALQYLFLGSAD 417
LQRIGTGL LSIVAMAVAALVE KRK+ A GL++S + PLPITFLWVALQY+FLGSAD
Sbjct: 431 LQRIGTGLFLSIVAMAVAALVETKRKKTATKFGLLDSPKVPLPITFLWVALQYIFLGSAD 490
Query: 418 LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY-RHTPWLF 476
LFTLAGMMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +T + HTPWL
Sbjct: 491 LFTLAGMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVTGAFGSHTPWLL 550
Query: 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 517
G+NLNHYHLERFYWLMC L GLNF+HFLFWA YKY ST P
Sbjct: 551 GANLNHYHLERFYWLMCALSGLNFVHFLFWANSYKYRCSTKP 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734029|emb|CBI15276.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/517 (75%), Positives = 442/517 (85%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPSSSANIVTNFMGTAFLLAL GGFL+DAFF+TY IY+ISAAIE +GLL+L +QAH
Sbjct: 92 MHFSPSSSANIVTNFMGTAFLLALLGGFLSDAFFSTYLIYLISAAIELVGLLILAIQAHV 151
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP C L + CRE +GGKA MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T
Sbjct: 152 PSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPK 211
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS
Sbjct: 212 GRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASILISIPIFLLGSAT 271
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YR KIPTGSP+TTI KVL AAI N K +N SN+V + +SP+ + E + S KE V
Sbjct: 272 YRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMV 331
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
P Q PTE +KFLN A+ + P + ++CTVK+VEEVKIV++I PIF TIMLNCCLAQLST
Sbjct: 332 PRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACTIMLNCCLAQLST 391
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
FSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQ
Sbjct: 392 FSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQ 451
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIGTGLILSIVAM VAA VEIKRKRVA SGLV+SSEPLPITF WVALQYLFLGSADLFT
Sbjct: 452 RIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVALQYLFLGSADLFT 511
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++Y H WLFG+NL
Sbjct: 512 LAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNL 571
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 517
NHYHLE+FYWLMC L GLNFLH+L WA+RYKY + P
Sbjct: 572 NHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456664|ref|XP_002271787.1| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/517 (75%), Positives = 442/517 (85%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPSSSANIVTNFMGTAFLLAL GGFL+DAFF+TY IY+ISAAIE +GLL+L +QAH
Sbjct: 61 MHFSPSSSANIVTNFMGTAFLLALLGGFLSDAFFSTYLIYLISAAIELVGLLILAIQAHV 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP C L + CRE +GGKA MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T
Sbjct: 121 PSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPK 180
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS
Sbjct: 181 GRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASILISIPIFLLGSAT 240
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YR KIPTGSP+TTI KVL AAI N K +N SN+V + +SP+ + E + S KE V
Sbjct: 241 YRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMV 300
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
P Q PTE +KFLN A+ + P + ++CTVK+VEEVKIV++I PIF TIMLNCCLAQLST
Sbjct: 301 PRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACTIMLNCCLAQLST 360
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
FSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQ
Sbjct: 361 FSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQ 420
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIGTGLILSIVAM VAA VEIKRKRVA SGLV+SSEPLPITF WVALQYLFLGSADLFT
Sbjct: 421 RIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVALQYLFLGSADLFT 480
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++Y H WLFG+NL
Sbjct: 481 LAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNL 540
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 517
NHYHLE+FYWLMC L GLNFLH+L WA+RYKY + P
Sbjct: 541 NHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540909|ref|XP_002511519.1| nitrate transporter, putative [Ricinus communis] gi|223550634|gb|EEF52121.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/517 (76%), Positives = 453/517 (87%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPS SANIVTNFMGTAFLLAL GGFLADAFFTTY IY+ISA IEFMGLL+LTVQA +
Sbjct: 61 MHFSPSGSANIVTNFMGTAFLLALLGGFLADAFFTTYHIYLISAVIEFMGLLVLTVQARS 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKP CV SC + +G KAVMLF GLY+VALGVGGIKGSL HGAEQ+DE TQ
Sbjct: 121 SSLKPLPCVSASTSISCEQVDGSKAVMLFTGLYLVALGVGGIKGSLPSHGAEQFDENTQQ 180
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRSAFFNYYVFCLS GALIAVTF VWIEDNKGWQWGFGISTATILLSIP+FLLGSP
Sbjct: 181 GRKQRSAFFNYYVFCLSFGALIAVTFAVWIEDNKGWQWGFGISTATILLSIPVFLLGSPT 240
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YRNK+P+GSP+TTI KVL AA++NTCK + +NAV V +S + + E+ + +S ++E+
Sbjct: 241 YRNKVPSGSPITTILKVLIAAVYNTCKPQTPNNAVMGVDTSSSYTTETSEVEDSYIREEA 300
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
+Q PTE ++FL+RA+ N P ++CTVK+VEEVK+V+KI PIFMSTIMLNCCLAQLST
Sbjct: 301 LNQTPTESLEFLDRAVMNKSINPTLRCTVKDVEEVKVVIKILPIFMSTIMLNCCLAQLST 360
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
FSVQQA+TMNTKLGSLKVPPASLPVFPVIFI+ILAP+YNH+I PFARKVTK+EMGITHLQ
Sbjct: 361 FSVQQASTMNTKLGSLKVPPASLPVFPVIFIMILAPIYNHIISPFARKVTKSEMGITHLQ 420
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIGTGL+LSIVAMA+AALVE+KRK VA ++GL +S++PLPITFLW+ALQYLFLGSADLFT
Sbjct: 421 RIGTGLVLSIVAMALAALVEMKRKGVATSAGLTDSAKPLPITFLWIALQYLFLGSADLFT 480
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAGMMEFFFT+APLSMRSLATSLSWASLAMGYY S+VLVSIVN +T YRHT WLFGSNL
Sbjct: 481 LAGMMEFFFTEAPLSMRSLATSLSWASLAMGYYLSSVLVSIVNAVTGAYRHTSWLFGSNL 540
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 517
NHYHLERFYWLMCIL G+NFLH+LFW+ RY+Y ST P
Sbjct: 541 NHYHLERFYWLMCILSGINFLHYLFWSCRYRYKSTSP 577
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497845|ref|XP_003517767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/518 (69%), Positives = 430/518 (83%), Gaps = 5/518 (0%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH SPS SAN VTNFMGTAF+LAL GGFL+DAFFT+YR+Y+ISA IEF+GL++LT+QA
Sbjct: 255 MHMSPSKSANNVTNFMGTAFILALLGGFLSDAFFTSYRVYLISAVIEFLGLIVLTIQARD 314
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP C L+ C+E KA MLF GLY+VALGVGGIKGSL HG EQ+DETT
Sbjct: 315 PSLKPPKCDLD---TPCQEVNDSKAAMLFIGLYLVALGVGGIKGSLPAHGGEQFDETTPS 371
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCLSCGALIAVTFVVWIEDNKGWQWGF IST +I +SIP+FL GS
Sbjct: 372 GRKQRSTFFNYFVFCLSCGALIAVTFVVWIEDNKGWQWGFAISTISIFVSIPVFLAGSAT 431
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGN-SNVKEK 239
Y+NKIP+GSPLTTI KVL AA+ N C KN+S+AV + SSP+ + R E K
Sbjct: 432 YKNKIPSGSPLTTILKVLVAALLNICTYKNTSSAVVNMASSPSNPHSGRMESKLETAKAS 491
Query: 240 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS 299
++ PT +KFLN+A+ N P Y ++CTV++VE+VK+V+K+ PIF TI+LNCCLAQLS
Sbjct: 492 TIAETPTSHLKFLNKAVTNKPRYSSLECTVQQVEDVKVVLKVLPIFGCTIILNCCLAQLS 551
Query: 300 TFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 359
TFSV+QAATM+TKLGSLKVPP+SLPVFPV+FI+ILAP+Y+H+IIP+ RK TK+EMGITHL
Sbjct: 552 TFSVEQAATMDTKLGSLKVPPSSLPVFPVVFIMILAPIYDHIIIPYTRKATKSEMGITHL 611
Query: 360 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN-SSEPLPITFLWVALQYLFLGSADL 418
QRIG GL+LSIVAMAVAALVEIKRKRVA +SGL++ ++PLPITFLW+A QYLFLGSADL
Sbjct: 612 QRIGFGLVLSIVAMAVAALVEIKRKRVATHSGLLDYPTKPLPITFLWIAFQYLFLGSADL 671
Query: 419 FTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 478
FTLAG++EFFF++AP+ MRSLATSLSWASLAMGYY S+V+VSIVN++T H PWL G+
Sbjct: 672 FTLAGLLEFFFSEAPIRMRSLATSLSWASLAMGYYLSSVIVSIVNSVTGNGTHKPWLSGA 731
Query: 479 NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
N NHYHLE+FYWLMC+L GLNFLH+L+WA RYKY TG
Sbjct: 732 NFNHYHLEKFYWLMCVLSGLNFLHYLYWATRYKYRGTG 769
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500557|ref|XP_003519098.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/519 (70%), Positives = 434/519 (83%), Gaps = 6/519 (1%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH SPS SAN VTNFMGTAFLLAL GGFL+DAFFTTYR+Y+ISA IEF+GL++LT+QA
Sbjct: 62 MHMSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTYRVYLISAVIEFLGLIVLTIQARD 121
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP C L+ C+E G KA MLF GLY+VALGVGGIKGSL HG EQ+DETT
Sbjct: 122 PSLKPPKCDLD---TPCQEVNGSKAAMLFIGLYLVALGVGGIKGSLPAHGGEQFDETTPS 178
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCLSCGALIAVTFVVWIEDNKGWQWGF IST +I +SIP+FL GSP
Sbjct: 179 GRKQRSTFFNYFVFCLSCGALIAVTFVVWIEDNKGWQWGFAISTISIFVSIPVFLAGSPT 238
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSN-VKEK 239
Y+NKIP+GSPLTTI KVL AA+ N+C KN+S+AV + SSP+ + R E VK
Sbjct: 239 YKNKIPSGSPLTTILKVLIAALLNSCTYKNTSSAVVNMTSSPSNPHSGRTESQQETVKAS 298
Query: 240 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS 299
++ PT ++KFLN+A+ N P Y ++CTV++VE+VK+V+K+ PIF TI+LNCCLAQLS
Sbjct: 299 TTTETPTSNLKFLNKAVTNKPRYSSLECTVQQVEDVKVVLKMLPIFACTIILNCCLAQLS 358
Query: 300 TFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 359
TFSV+QAATM+TKLGSLKVPP+SLPVFPV+FI+ILAP+Y+H+IIP+ RK TK+EMGITHL
Sbjct: 359 TFSVEQAATMDTKLGSLKVPPSSLPVFPVVFIMILAPIYDHIIIPYTRKATKSEMGITHL 418
Query: 360 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS-SEPLPITFLWVALQYLFLGSADL 418
QRIG GL+LSIVAMAVAA+VEIKRKRVA SGL++ ++PLPITFLW+A QYLFLGSADL
Sbjct: 419 QRIGFGLVLSIVAMAVAAIVEIKRKRVATQSGLLDDPTKPLPITFLWIAFQYLFLGSADL 478
Query: 419 FTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT-PWLFG 477
FTLAG++EFFFT+AP+ MRSLATSLSWASLAMGYY S+V+VSIVN++T H PWL G
Sbjct: 479 FTLAGLLEFFFTEAPIRMRSLATSLSWASLAMGYYLSSVIVSIVNSVTGNGTHNKPWLSG 538
Query: 478 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
+N NHYHLE+FYWLMC+L GLNFLH+L+WA +YKY TG
Sbjct: 539 ANFNHYHLEKFYWLMCVLSGLNFLHYLYWATKYKYRGTG 577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473379|ref|XP_002269693.2| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/517 (71%), Positives = 425/517 (82%), Gaps = 5/517 (0%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MHFSPS SAN VTNFMGTAFLLAL GGFL+DAFFT Y IY+ISA IEF+GL++LT+QA +
Sbjct: 92 MHFSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTPYHIYLISAVIEFLGLIVLTIQARS 151
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKP C SC+ GGKA MLF GLY+VALGVGGIKGSL HGAEQ DE+T
Sbjct: 152 PSLKPLECKKGTADTSCQVLSGGKAGMLFVGLYLVALGVGGIKGSLPAHGAEQLDESTPQ 211
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCLSCGALIAVT VVW+EDNKGW+WGFGI+T +I SIP+FL GS
Sbjct: 212 GRKQRSTFFNYFVFCLSCGALIAVTLVVWVEDNKGWEWGFGIATISIFASIPVFLGGSAT 271
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTC-SNESRDEGNSNVKEK 239
YRNKIP+GSPLTTIFKVL AA N ++ SNAV + +SP+ + S++ N K
Sbjct: 272 YRNKIPSGSPLTTIFKVLIAATLN----RSPSNAVASMATSPSYPTQNSKEPEEENGKAI 327
Query: 240 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS 299
VP+Q PTE + FLNRA+ N P Y V+CTV++VEEVKIV+KI PIF TIMLNCCLAQLS
Sbjct: 328 VPAQTPTESLGFLNRAVVNKPVYKAVECTVQQVEEVKIVIKILPIFACTIMLNCCLAQLS 387
Query: 300 TFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 359
TFSVQQAATMNTKLGSLKVPPASLP+FPV+F++ LAP+Y+H IIPFARKVTKTEMGI+HL
Sbjct: 388 TFSVQQAATMNTKLGSLKVPPASLPIFPVLFMMTLAPIYDHFIIPFARKVTKTEMGISHL 447
Query: 360 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLF 419
QRIG GL+ SI+AMAVAALVE+KRKRVA N GL++S+E LPITF W+A QYLFLGSADLF
Sbjct: 448 QRIGIGLVFSIIAMAVAALVEVKRKRVASNLGLIDSTEQLPITFFWIAFQYLFLGSADLF 507
Query: 420 TLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 479
TLAG+MEFFFT+AP MRSLATSLSWASLAMGYY S+V+VSIVNN + H PWL G
Sbjct: 508 TLAGLMEFFFTEAPTGMRSLATSLSWASLAMGYYLSSVIVSIVNNFLGSLNHRPWLSGRK 567
Query: 480 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
LNHYHLERFYWLMC+L GLNFLH+LFWA RYKY STG
Sbjct: 568 LNHYHLERFYWLMCVLTGLNFLHYLFWACRYKYRSTG 604
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100445|ref|XP_002311879.1| predicted protein [Populus trichocarpa] gi|222851699|gb|EEE89246.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/514 (70%), Positives = 430/514 (83%), Gaps = 3/514 (0%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH SPS SAN VTNFMGT+FLLAL GGFLAD FFTTY +++ISAAIEF+GL++LTVQA +
Sbjct: 61 MHLSPSKSANNVTNFMGTSFLLALLGGFLADTFFTTYHVFLISAAIEFLGLVILTVQARS 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SLKPP C + C++ +G KA MLF GLY+VALGVGGIKGSL HGAEQ+DE+T
Sbjct: 121 SSLKPPACNPSNPTIPCQQIDGAKAAMLFTGLYLVALGVGGIKGSLPAHGAEQFDESTPQ 180
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCLSCGALIAVTFVVW+EDNKGW WGFGIST ILLSIPIFL GS
Sbjct: 181 GRKQRSTFFNYFVFCLSCGALIAVTFVVWVEDNKGWVWGFGISTIAILLSIPIFLAGSAA 240
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
YRNKIP+GSPL TI KVL AA NTC S++S NA+ + +SP+ N + + N +
Sbjct: 241 YRNKIPSGSPLATISKVLVAAGVNTCMSRSSGNAIASLTTSPSNPNPTSKDAIDNSIAVM 300
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
P++ PT+ + +LN+A+ N P + ++CTV++VEEVKIV+KIFPIF TIMLNCCLAQLST
Sbjct: 301 PAETPTKSLDWLNKAVVNKPIHSALECTVQQVEEVKIVIKIFPIFACTIMLNCCLAQLST 360
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
FSVQQA TM+TKLGSLKVPPASLPVFPV+FI++LAPVY+H+IIPFARK+TK+EMGITHLQ
Sbjct: 361 FSVQQADTMDTKLGSLKVPPASLPVFPVVFIMMLAPVYDHLIIPFARKLTKSEMGITHLQ 420
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIG GL+LSI+AMAVAALVEIKRKRVA NSGLV+ LPITF W+A QYLFLGSADLFT
Sbjct: 421 RIGIGLVLSIIAMAVAALVEIKRKRVAANSGLVDK---LPITFFWIAFQYLFLGSADLFT 477
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAG++EFFFT+AP MRSLA SLSWASLAMGYY S+V+VSIVNN+T ++ PWL G+N+
Sbjct: 478 LAGLLEFFFTEAPAGMRSLAMSLSWASLAMGYYLSSVIVSIVNNVTGNSKNRPWLSGTNI 537
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 514
NH+HLERFYWL+C+L LNFLH+LFWA RYKYS+
Sbjct: 538 NHHHLERFYWLLCVLSVLNFLHYLFWATRYKYST 571
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440756|ref|XP_004138150.1| PREDICTED: nitrate transporter 1.2-like [Cucumis sativus] gi|449477315|ref|XP_004154989.1| PREDICTED: nitrate transporter 1.2-like [Cucumis sativus] gi|430736181|gb|AGA60120.1| nitrate transporter NRT1.2B [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/522 (69%), Positives = 432/522 (82%), Gaps = 9/522 (1%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
MH+SPS SANIVTNFMGTAFLLAL GGFL+DAFFTTY I++ISAAIE +GL++LT+QA
Sbjct: 75 MHYSPSESANIVTNFMGTAFLLALLGGFLSDAFFTTYSIFLISAAIESLGLVILTLQADV 134
Query: 61 RSLKPPTCVLEDGIAS---CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDET 117
LKP CV + + + C + EGG+A MLFAGLY+VALGVGGIKG+L PHGAEQ+DET
Sbjct: 135 PYLKPSRCV-SNAVGNGNPCHKVEGGEAAMLFAGLYMVALGVGGIKGALPPHGAEQFDET 193
Query: 118 TQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 177
+ GRK+RS FFNY++FCLSCGALIAVT VVW+EDNKGWQWGFGIST TIL+SIPIFLLG
Sbjct: 194 SFEGRKKRSVFFNYFIFCLSCGALIAVTLVVWMEDNKGWQWGFGISTLTILISIPIFLLG 253
Query: 178 SPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNE-----SRDEG 232
SP YR K P GSP+TTIFKVL +A FN K K +N V + +S S+ + ++
Sbjct: 254 SPTYRIKTPAGSPITTIFKVLVSAAFNNRKKKTRNNVVMNISTSSVSSDTTTDIIADEQR 313
Query: 233 NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLN 292
+ KE PS T+ ++FLN+A +NP++P + CTVK+VEE KIV+KI PIF STIMLN
Sbjct: 314 QTMEKESDPSPIQTQAMEFLNKATIDNPSHPQLNCTVKQVEEAKIVLKILPIFTSTIMLN 373
Query: 293 CCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKT 352
CCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPV+FI+ILAP YNH+++P ARK+TK+
Sbjct: 374 CCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVLFIMILAPSYNHLVLPVARKLTKS 433
Query: 353 EMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLF 412
EMGITHLQRIGTGL+LS VAMAVAALVE KRK +A+ + ++S +PLPITFLWVALQYLF
Sbjct: 434 EMGITHLQRIGTGLVLSTVAMAVAALVETKRKNLAIKTHKLDSPDPLPITFLWVALQYLF 493
Query: 413 LGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT 472
LGSADLF+LAGMMEFFFT+APLSMRSLAT+LSWASLAMGYYFS+VLV++VN +T
Sbjct: 494 LGSADLFSLAGMMEFFFTEAPLSMRSLATALSWASLAMGYYFSSVLVALVNGVTKACGLR 553
Query: 473 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 514
PWL G +LNHYHLERFYW+MCIL GLNFL +LFWA+RY Y S
Sbjct: 554 PWLSGKSLNHYHLERFYWVMCILSGLNFLQYLFWASRYTYRS 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 517 | ||||||
| TAIR|locus:2196739 | 585 | NRT1:2 "AT1G69850" [Arabidopsi | 0.990 | 0.875 | 0.606 | 6.6e-168 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.970 | 0.885 | 0.589 | 4.4e-155 | |
| TAIR|locus:2170683 | 589 | AT5G62730 [Arabidopsis thalian | 0.814 | 0.714 | 0.622 | 1.7e-154 | |
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.955 | 0.835 | 0.367 | 9.7e-80 | |
| TAIR|locus:2090230 | 521 | AT3G25280 [Arabidopsis thalian | 0.417 | 0.414 | 0.422 | 1.5e-79 | |
| TAIR|locus:2090325 | 515 | AT3G25260 [Arabidopsis thalian | 0.458 | 0.460 | 0.378 | 7.5e-78 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.874 | 0.772 | 0.357 | 4.5e-75 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.941 | 0.854 | 0.337 | 5.3e-72 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.901 | 0.817 | 0.336 | 2.1e-70 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.444 | 0.385 | 0.405 | 4.7e-70 |
| TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1633 (579.9 bits), Expect = 6.6e-168, P = 6.6e-168
Identities = 319/526 (60%), Positives = 385/526 (73%)
Query: 1 MHFSPSSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHT 60
MH SPS SAN VTNFM ++I++ISA+IEF+GL++LT+QA T
Sbjct: 61 MHMSPSKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQART 120
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SL PP+C D +C E G KA MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T
Sbjct: 121 PSLMPPSC---DS-PTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPK 176
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST I +SI IFL GS F
Sbjct: 177 GRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRF 236
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKE 238
YRNKIP GSPLTTI KVL AA C S +SSNAV + SP+ C ++ + E S +
Sbjct: 237 YRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGEL 296
Query: 239 KVPSQK----P----TEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIM 290
+ P Q+ P T +K LN A P + +++CT PIF TIM
Sbjct: 297 EKPRQEEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIM 356
Query: 291 LNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVT 350
LNCCLAQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK T
Sbjct: 357 LNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKAT 416
Query: 351 KTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQY 410
KTE G+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E LP+TFLW+ALQY
Sbjct: 417 KTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQY 476
Query: 411 LFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYR 470
LFLGSADLFTLAG++E+FFT+AP SMR MGYY S+V+VSIVN+IT +
Sbjct: 477 LFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGSSG 536
Query: 471 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
+TPWL G ++N Y L+ FYWLMC+L NFLH+LFWA RYKY STG
Sbjct: 537 NTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582
|
|
| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 304/516 (58%), Positives = 362/516 (70%)
Query: 1 MHFSPSSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHT 60
MH S + S++ VT FM + I++ISA+IEF+GL+LLT+QA
Sbjct: 63 MHMSLARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARR 122
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
SL PP C + C G KA LF GLY+V+LG+GGIKGSL HGAEQ+DE T
Sbjct: 123 PSLMPPPCKSSAALR-CEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPK 181
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
GRKQRS FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I LSI +FLLGS F
Sbjct: 182 GRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRF 241
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
Y+NKIP GSPLTTIFKVL AA +C SK SSN T SR E S +EK
Sbjct: 242 YKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFT-----------SR-EVQSEHEEKT 289
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLST 300
PSQ T + LN+A+ + ++CT PIF TIMLNCCLAQLST
Sbjct: 290 PSQSLTNSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLST 349
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
+SV QAATMN K+ + VP ASLPVFPV+F+LILAP Y+H+IIPFARKVTK+E+GITHLQ
Sbjct: 350 YSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQ 409
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
RIG GL+LSIVAMAVAALVE+KRK+VA +GL++S E LPITFLW+ALQYLFLGSADLFT
Sbjct: 410 RIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFT 469
Query: 421 LAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
LAG++EFFFT+AP SMR +GYY S+V+V IVN +T + +PWL G L
Sbjct: 470 LAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKL 528
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516
N L+ FYWLMC+L +NFLH+LFWA RYKY STG
Sbjct: 529 NRNRLDLFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564
|
|
| TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 1.7e-154, Sum P(2) = 1.7e-154
Identities = 271/435 (62%), Positives = 320/435 (73%)
Query: 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVT 145
V LF GLY+VALGVGGIKGSL PHGAEQ+DE T GR+QRS FFNY++F LSCGALIAVT
Sbjct: 160 VFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVT 219
Query: 146 FVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT 205
VVW+EDNKGW +GFG+STA IL+S+P+FL GS YR K+P+GSP+TT+FKVLTAA++
Sbjct: 220 VVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAK 279
Query: 206 CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI- 264
K + +S V H+ C ++S + N + + FL +R + P
Sbjct: 280 YKKRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGFLGS-------FLGEVVRERESLPRP 331
Query: 265 VQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP 324
++CT PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGS VPPA+LP
Sbjct: 332 LRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALP 391
Query: 325 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 384
VFPV+F++ILAP YNH+++P ARK TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK
Sbjct: 392 VFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRK 451
Query: 385 RVAV-----NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXX 439
V V N+ SS PLPITFLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MR
Sbjct: 452 HVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSL 511
Query: 440 XXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLN 499
MGYYFS+VLVS VN +T H PWL G NLN YHLERFYWLMC+L G+N
Sbjct: 512 ATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGIN 571
Query: 500 FLHFLFWAARYKYSS 514
FLH+LFWA+RY Y S
Sbjct: 572 FLHYLFWASRYVYRS 586
|
|
| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 192/523 (36%), Positives = 274/523 (52%)
Query: 1 MHFSPSSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHT 60
MHF S +ANIVTNF+ + +I +E G +LL+VQAH
Sbjct: 77 MHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHL 136
Query: 61 RSLKPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 119
LKPP C L D +C E +G KA++ F LY+VALG G +K ++ HGA+Q+ ++
Sbjct: 137 PQLKPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHP 194
Query: 120 LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 179
K+ S++FN F S G LIA+T +VW++ + G GFG+S A + + I + G+
Sbjct: 195 KQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTM 254
Query: 180 FYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK 239
++RNK P S T I V+ AAI K K +S S P + N V
Sbjct: 255 YFRNKRPRRSIFTPIAHVIVAAIL---KRKLASP------SDPRMLHGDHHVANDVVPSS 305
Query: 240 VPSQKPTEDIKFLNRAL-----RNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCC 294
P +FL++A N P CT PIF STI+ N
Sbjct: 306 TLPHTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTI 363
Query: 295 LAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTE 353
LAQL TFSVQQ ++MNT+L S +PPASL P I ++ L P+Y+ ++PFARK+T
Sbjct: 364 LAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHN 423
Query: 354 MGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFL 413
GI L RIG GL LS +M AA++E KR+ +V G + ++ W+ Q+L
Sbjct: 424 SGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LSIFWITPQFLIF 476
Query: 414 GSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTP 473
G +++FT G++EFF+ + M G+YFS+VLVS+VN ITST +
Sbjct: 477 GISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSK 536
Query: 474 -WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 515
WL ++LN L+ FYWL+ +L LNFL +LFW+ R+ S+
Sbjct: 537 GWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWS-RWNIKSS 578
|
|
| TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 98/232 (42%), Positives = 138/232 (59%)
Query: 283 PIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHV 341
PIF STI+++CC+AQLSTFS QQ MN KL S ++P SL P+IF+L+ P+Y
Sbjct: 302 PIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF- 360
Query: 342 IIPFARKVTK---TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 398
F +K++ +L+RIG GL LS V+MAV+A+VE KRK V++
Sbjct: 361 ---FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVEAKRKHEVVHNNF------ 411
Query: 399 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVL 458
I+ LW+ QYL L +D+ TL GM+EFF+ +AP +M+ +G++ ST L
Sbjct: 412 -RISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTALGFFLSTTL 470
Query: 459 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510
V + N +T H WL G +LN LE FY L+C+L LN L+++FWA RY
Sbjct: 471 VEVTNAVTGRLGHQ-WLGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWAKRY 521
|
|
| TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 100/264 (37%), Positives = 150/264 (56%)
Query: 250 KFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATM 309
KFLN+A NN + + PIF STI++NCC+AQ+ TFSVQQ
Sbjct: 276 KFLNKAKLNN------KISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVT 329
Query: 310 NTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV-TKTEMGIT-HLQRIGTGL 366
N KL S ++P ASL P++ +L +Y F +++ + +E + +L+RIG GL
Sbjct: 330 NRKLSRSFEIPVASLNAIPLLCMLSSLALYEL----FGKRILSNSERSSSFNLKRIGYGL 385
Query: 367 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 426
L+ ++MAVAA+VE+KRK AV++ + I+ W+ LQ++ L +D+ T+ GM+E
Sbjct: 386 ALTSISMAVAAIVEVKRKHEAVHNNI-------KISVFWLELQFVMLSLSDMLTVGGMLE 438
Query: 427 FFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 486
FFF ++P SMR MG++ S+VLV +VN IT WL +LN LE
Sbjct: 439 FFFRESPASMRSMSTALGWCSTAMGFFLSSVLVEVVNGITG------WL-RDDLNESRLE 491
Query: 487 RFYWLMCILGGLNFLHFLFWAARY 510
FY ++C+L LN +++FWA RY
Sbjct: 492 LFYLVLCVLNTLNLFNYIFWAKRY 515
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 170/476 (35%), Positives = 265/476 (55%)
Query: 44 AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIK 103
+ I F+G+ LT+ A +LKP C+ + C + M F GLY++ALG GGIK
Sbjct: 120 SGIYFIGMSALTLSASVPALKPAECIGD----FCPSATPAQYAMFFGGLYLIALGTGGIK 175
Query: 104 GSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 163
++ GA+Q+D+T R ++++FFN++ F ++ GAL++ + +VWI++N+GW GFGI
Sbjct: 176 PCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIP 235
Query: 164 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT 223
T + L+I F G+P YR + P GSP+T I +V+ A+ + SS V E T
Sbjct: 236 TVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF------RKSSVKVPE---DAT 286
Query: 224 CSNESRDEGNSNVKEKVPSQKPTEDIKFLNRAL------RNNPAYPIVQ--CTXXXXXXX 275
E++D+ NS + + T+D ++L++A + Y CT
Sbjct: 287 LLYETQDK-NSAIAGSRKIEH-TDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEEL 344
Query: 276 XXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILA 335
FPI+ S I+ + AQ+ST VQQ MN K+GS ++PPA+L F ++I
Sbjct: 345 KILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWV 404
Query: 336 PVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS 395
P+Y+ I+P ARK T + G T +QR+G GL +S++ MA AA+VEI R +A + GLV S
Sbjct: 405 PLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES 464
Query: 396 SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFS 455
P+PI+ LW QY LG+A++F G +EFF+ +P +MR +G Y S
Sbjct: 465 GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLS 524
Query: 456 TVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511
++++++V T+ W+ NLN HL+ F+WL+ L +N + F AARYK
Sbjct: 525 SLILTLVTYFTTRNGQEGWI-SDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYK 579
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 175/518 (33%), Positives = 268/518 (51%)
Query: 6 SSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKP 65
+++AN VTN+ Y I G+ LLT+ A LKP
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 66 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 125
C + +C + AV F LY++ALG GGIK ++ GA+Q+DE + + ++
Sbjct: 125 GNCNAD----TCHPNSSQTAVF-FVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKK 179
Query: 126 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 185
S+FFN++ F ++ GALIA T +VWI+ N GW WGFG+ T +++++ F GS FYR +
Sbjct: 180 SSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQR 239
Query: 186 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK- 244
P GSPLT IF+V+ AA F K V + E+ D+ SN+K S+K
Sbjct: 240 PGGSPLTRIFQVIVAA-FRKISVK--------VPEDKSLLFETADD-ESNIKG---SRKL 286
Query: 245 -PTEDIKFLNRA--------LRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCL 295
T+++KF ++A +++ P C+ P++ + I+
Sbjct: 287 VHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 296 AQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 354
+Q+ST V Q TM+ +G + ++P ASL +F + +L PVY+ IIP ARK T+ E
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNER 406
Query: 355 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLG 414
G T LQR+G GL++SI AM A ++E+ R + + + ++ W QYL +G
Sbjct: 407 GFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ-IHMSIFWQIPQYLLIG 465
Query: 415 SADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPW 474
A++FT G +EFF+ AP +MR +G Y STVLV++V IT W
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGW 525
Query: 475 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512
+ NLN HL+ F++L+ L LNFL +L+ + RYKY
Sbjct: 526 I-PDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 162/482 (33%), Positives = 255/482 (52%)
Query: 38 RIYVISA--AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 95
R + I++ I G+ LLT+ A L P TC E +C G A+ F LY++
Sbjct: 96 RYWTIASFVVIYIAGMTLLTISASVPGLTP-TCSGE----TCHATAGQTAIT-FIALYLI 149
Query: 96 ALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155
ALG GGIK ++ GA+Q+D+T + ++ +S+FFN++ F ++ GA+IA + +VWI+ N G
Sbjct: 150 ALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVG 209
Query: 156 WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT-CKSKNSSNA 214
W WG G+ T + +++ F GS FYR + P GSPLT + +V+ A+ + K +
Sbjct: 210 WGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL 269
Query: 215 VTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTXXXXXX 274
+ E + + SR ++ + K + + N+ + ++ + CT
Sbjct: 270 LYENQDAESSIIGSRKLEHTKILTFF--DKAAVETESDNKGAAKSSSWKL--CTVTQVEE 325
Query: 275 XXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILI 333
PI+ + I+ +Q+ T V Q T++ +G + K+P ASL +F + +L
Sbjct: 326 LKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLF 385
Query: 334 LAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV 393
APVY+ +I+PFARK T E G T LQRIG GL++SI +M A ++E+ R L
Sbjct: 386 WAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLY 445
Query: 394 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYY 453
N E +P+T W QY +G A++FT G +EFF+ AP +MR G Y
Sbjct: 446 NE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNY 504
Query: 454 FSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513
ST LV++V +T + W+ NLN+ HL+ F+WL+ L LNFL +L+ A Y Y
Sbjct: 505 LSTFLVTLVTKVTRSGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
Query: 514 ST 515
T
Sbjct: 564 KT 565
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 94/232 (40%), Positives = 133/232 (57%)
Query: 283 PIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHV 341
PI S I+L AQ TFS+QQA TMN L S ++P S+ VF + +L Y+ V
Sbjct: 336 PIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRV 395
Query: 342 IIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL-P 400
+ ARK T E GIT L R+G G ++SI+A VA VE+KRK VA+ GL++ + P
Sbjct: 396 FVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVP 455
Query: 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVS 460
I+FLW+ QY G A+ F G +EFF+ AP SMR +G Y ST+LV+
Sbjct: 456 ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVT 515
Query: 461 IVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512
+V+ ++ + WL +NLN LE FYWL+ +L +N +++L+ A Y Y
Sbjct: 516 LVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTY 567
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H157 | PTR19_ARATH | No assigned EC number | 0.6730 | 0.9903 | 0.8752 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 517 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 6e-79 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 9e-22 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-20 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 9e-05 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 6e-79
Identities = 117/413 (28%), Positives = 192/413 (46%), Gaps = 44/413 (10%)
Query: 37 YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVA 96
++ ++ + I +G +LLT+ A SL P + + + GLY++A
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-----------------QVALFYIGLYLIA 43
Query: 97 LGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156
LG GGIK +++ GA+Q+DET +R FF+++ F ++ G+LIA +++ N G+
Sbjct: 44 LGTGGIKPNVSAFGADQFDET---QDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGY 100
Query: 157 QWGFGISTATILLSIPIFLLGSPFYRNKIP-TGSPLTTIFKVLTAAIFNTCKSKNSSNAV 215
GFG+ +LL++ +FLLGS Y+ K P GSP T + A K + ++
Sbjct: 101 PLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSH 160
Query: 216 TEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEV 275
+ + S + + KF V +
Sbjct: 161 WLYWALEKYNKRS---ISQTKVHTRVAVIFIPLPKFWALF-----------DQQGSVWLL 206
Query: 276 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL-KVPPASLPVFPVIFILIL 334
+ ++ + PI+ I+ + QL+T V+Q TM+ + L ++PPAS F + +LIL
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLIL 266
Query: 335 APVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 394
P+ + ++ P R + G+T QR G G+ + IVA +AA+VE KR R A GL +
Sbjct: 267 LPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTS 322
Query: 395 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS 447
+P+ LW + G LAG +EF P SM SL T LS A+
Sbjct: 323 PGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 9e-22
Identities = 78/388 (20%), Positives = 153/388 (39%), Gaps = 71/388 (18%)
Query: 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTR 61
++ ++ NI F +L L G +AD++ ++ + + + +G L ++ A
Sbjct: 19 GWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHALASLGAVPS 78
Query: 62 SLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 121
P L GL ++ALG GGIK ++ G +Q++E
Sbjct: 79 LGHPLHDALS-----------------LVGLALIALGTGGIKPCVSAFGGDQFEERQL-- 119
Query: 122 RKQRSAFFNYYVFCLSCGALIAVTF-------VVWIEDNKGWQWGFGISTATILLSIPIF 174
R FF+++ F ++ G+L + V + FG+ + L++ +F
Sbjct: 120 -SLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVF 178
Query: 175 LLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS 234
+GS Y+ K P G+ + KV+ +F K
Sbjct: 179 SMGSKMYKKKPPVGN---IVSKVMKCIVFALKKR-------------------------- 209
Query: 235 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCC 294
+ +ED L+ P Y I + + K ++++ +F+ M
Sbjct: 210 -------FRTRSEDWPRLHWLDWAAPKYLI-----RMIRSTKRLLRVLFLFIPLPMFWAL 257
Query: 295 LAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 354
Q + QA M+ +G + P + + +LIL P++++V+ + K
Sbjct: 258 FDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVV---YPALAKCGT 314
Query: 355 GITHLQRIGTGLILSIVAMAVAALVEIK 382
T L+++ G++L+ +A AVAAL++ K
Sbjct: 315 RFTSLRKMAVGMLLAALAFAVAALLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 83/464 (17%), Positives = 161/464 (34%), Gaps = 94/464 (20%)
Query: 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRS 62
F + + + + + +L + GG+LAD T R V+ A + +G L+L +
Sbjct: 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI------ 111
Query: 63 LKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 122
L+ GL ++ +G G K +++ E Y +
Sbjct: 112 -----------------SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK----DD 150
Query: 123 KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFY- 181
+R F + ++ G+LIA + N GW GFG++ +++ + IFLLG
Sbjct: 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK 210
Query: 182 -------------RNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 228
+P + +L A + S +
Sbjct: 211 GIGGVPDPNPLSFNFLLPVL--GGLVVMILAALLTLLLNQNTFSGVLL------------ 256
Query: 229 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 288
V S I + A R+ K +E + ++ P+F+
Sbjct: 257 -----------VISILIA--IIYFAEAFRSP----------KVFDERRRLLAAIPLFLFA 293
Query: 289 IMLNCCLAQLST-FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFAR 347
++ Q+ + ++ +N ++ +VPPA FI++ +P+ + R
Sbjct: 294 VIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353
Query: 348 KVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 407
+ I GLIL+ + + L I SGLV + W+
Sbjct: 354 GNKQPSTPIK----FALGLILAGLGFLILLLAGIWF---GGPSGLV--------SVWWLV 398
Query: 408 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMG 451
L Y+ +LF + AP +++S ++ + ++A G
Sbjct: 399 LSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAG 442
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 28/198 (14%)
Query: 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRS 62
FS + I + +LL G + D + T + V+ + +G +L + +
Sbjct: 45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD- 103
Query: 63 LKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 122
++F GL +A+G G K + + + Y+ +
Sbjct: 104 ------------------------LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDM 136
Query: 123 KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 182
+R F + ++ G+ I+ I +N G+ GF ++ +++ + F G R
Sbjct: 137 PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR 196
Query: 183 NKIPTGSPLTTIFKVLTA 200
+ PL+ K
Sbjct: 197 DIGSVPDPLSGQGKTYGK 214
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 517 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.89 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.88 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.87 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.87 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.86 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.86 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.83 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.82 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.81 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.81 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.8 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.8 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.8 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.8 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.79 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.78 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.77 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.76 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.68 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.67 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.62 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.6 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.59 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.59 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.58 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.58 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.58 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.56 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.55 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.55 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.54 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.42 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.42 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.37 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.3 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.26 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.25 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.2 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.2 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.17 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.14 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.14 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.13 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.1 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.1 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.09 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.09 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.08 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.05 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.05 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.05 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.03 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.01 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.01 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.99 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.94 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.91 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.89 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.87 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.85 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.81 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.76 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.75 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.75 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.74 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.72 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.71 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.7 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.7 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.69 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.68 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.68 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.67 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.66 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.65 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.64 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.63 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.62 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.59 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.57 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.57 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.56 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.54 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.53 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.53 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.52 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.52 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.51 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.51 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.5 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.5 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.49 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.49 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.47 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.47 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.47 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.47 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.46 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.43 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.4 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.37 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.35 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.35 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.33 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.31 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.3 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.29 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.28 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.28 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.26 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.25 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.21 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.18 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.14 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.14 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.13 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.11 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.1 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.07 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.05 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.03 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.01 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.99 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.98 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.95 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.93 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.92 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.88 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.85 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.84 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.66 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.31 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.21 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.16 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.09 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.99 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.8 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.61 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.6 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.49 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.16 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.1 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.44 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.43 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.37 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.07 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.89 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.56 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.45 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.3 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.06 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.58 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.03 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.41 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 92.05 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 90.45 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 90.43 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 88.03 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 86.18 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 86.11 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.71 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 81.02 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 80.69 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.54 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=405.70 Aligned_cols=492 Identities=43% Similarity=0.697 Sum_probs=438.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC-cccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA-SCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~-~~~~ 79 (517)
+|.+..++.-.++.|....++.++++++++|.|+||.+++.++..+..+|..++++++..+.+.++.| .+.... .|..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~ 146 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCES 146 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccC
Confidence 46777899999999999999999999999999999999999999999999999999999999888877 443333 6777
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
........++.++.+..+|.|+.+|+..++.+||+++.++.+++++..+|+|+|+..|+|..++-.+..|++++.+|.+.
T Consensus 147 ~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lg 226 (571)
T KOG1237|consen 147 PSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLG 226 (571)
T ss_pred cchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceee
Confidence 77888999999999999999999999999999999977777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK 239 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (517)
|.++.+.+++++++|+...+.|++..|.+++...+.++++.+.+++....+..++ +.+ .....
T Consensus 227 f~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~------------~~~-----~~~~~ 289 (571)
T KOG1237|consen 227 FGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPE------------ELY-----YDCTD 289 (571)
T ss_pred ccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcch------------hcc-----ccccc
Confidence 9999999999999999999999999999999999999999999988766554322 100 01111
Q ss_pred CCCCCCCchhHHHHHhhhcCC--------CCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhcc
Q 010145 240 VPSQKPTEDIKFLNRALRNNP--------AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNT 311 (517)
Q Consensus 240 ~~~l~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (517)
....+..++.+++|++..+.. .++|+.|+.+++++.|.+++.+|++...+++++++.|+.+..+.|...||+
T Consensus 290 ~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr 369 (571)
T KOG1237|consen 290 SVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDR 369 (571)
T ss_pred cccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCC
Confidence 122333567788998877643 257999999999999999999999999999999999999999999999999
Q ss_pred CCCC-eeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 312 KLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 390 (517)
Q Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 390 (517)
+.++ +.+|++.++.+..+.+.+..|+++++..|+.||..+++.+.+.+.|+.+|+.+..++|...+..|.+|++....
T Consensus 370 ~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~- 448 (571)
T KOG1237|consen 370 HLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS- 448 (571)
T ss_pred CCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh-
Confidence 9997 99999999999999999999999999999999988776778999999999999999999999999998887655
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 010145 391 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR 470 (517)
Q Consensus 391 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~ 470 (517)
+.....+++.+|++++|+++|++|.+..++.+|+.++++|++||+.+++++.+..++|++++..+..++...+..
T Consensus 449 ---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~-- 523 (571)
T KOG1237|consen 449 ---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK-- 523 (571)
T ss_pred ---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 223346899999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred CCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 010145 471 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516 (517)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~~ 516 (517)
+.+|++.+++|+++.+++||+++.++.++.+.+.+..+||++++.+
T Consensus 524 ~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 524 AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 3589993399999999999999999999999999999999877643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=323.54 Aligned_cols=421 Identities=18% Similarity=0.313 Sum_probs=325.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|++++..+.+.|..-+++.+++|||++||++|+||++..|.+++++|.++++.+..
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~--------------------- 114 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV--------------------- 114 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc---------------------
Confidence 57999999999999999999999999999999999999999999999999999999730
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
.+...++++.++.++|.|+++|++.++++|++|++|+ ||.+.|+++|+++|+|++++|.+++++++++||...|
T Consensus 115 --~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF 188 (498)
T COG3104 115 --SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGF 188 (498)
T ss_pred --ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHH
Confidence 0345799999999999999999999999999999885 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCC--Cchh------HHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTG--SPLT------TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEG 232 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (517)
.++.+.+.++++.++++++++....... .+.. ............... .+.
T Consensus 189 ~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l------------- 246 (498)
T COG3104 189 GLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLT---------LLL------------- 246 (498)
T ss_pred HHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHH---------HHH-------------
Confidence 9999999999999999988876654221 1111 011111111110000 000
Q ss_pred CCcccCCCCCCCCCchhH-HHHHhhhcCC------CCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHH
Q 010145 233 NSNVKEKVPSQKPTEDIK-FLNRALRNNP------AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ 305 (517)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~-~l~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (517)
..+..+ .+.......+ ...+ ++.. ++||+++..+++++..++||..+.|..+.+..+
T Consensus 247 ------------~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~ 310 (498)
T COG3104 247 ------------NQNTFSGVLLVISILIAIIYFAEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLY 310 (498)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 000000 0000000000 0011 2223 788999999999999999999999999988777
Q ss_pred H-HHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 306 A-ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 384 (517)
Q Consensus 306 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~ 384 (517)
. +..+++..|+.++++.+|++|++.++++.|+.+++..|+.++. +. ++...++..|+.+++.+++++.......
T Consensus 311 a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~- 385 (498)
T COG3104 311 ADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF- 385 (498)
T ss_pred HHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 6 5667775679999999999999999999999999999988764 22 7999999999999999999888764221
Q ss_pred HHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010145 385 RVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 464 (517)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~ 464 (517)
++ ....++.+|+++.|+++++||.+.+|..++++.+.+|+++++..+++|.++...|+.++..+.+.-..
T Consensus 386 --~~--------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~ 455 (498)
T COG3104 386 --GG--------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV 455 (498)
T ss_pred --cC--------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc
Confidence 10 02457899999999999999999999999999999999999999999999999999998887763210
Q ss_pred ccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 465 ITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
+ +...+......+|+..+...++..+......++.++
T Consensus 456 -~----------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 456 -T----------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred -c----------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 0 001223444667888888877776665655555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=313.07 Aligned_cols=426 Identities=14% Similarity=0.205 Sum_probs=305.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|++.++++|+++.|....++.++++|+++||++||||+++++.+++.+|+++++++.+.
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-------------------- 104 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-------------------- 104 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc--------------------
Confidence 588999999999999999999999999999995599999999999999999999987531
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
...++++|+++|+|.|+.+|+..++++|++|++++ +|++.++++|++.|+|+++||.+++++.+++|||+.|
T Consensus 105 ----~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F 176 (489)
T PRK10207 105 ----PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTY 176 (489)
T ss_pred ----hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 22466899999999999999999999999997652 3688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccc--CCCCCchhHHHHHHH--------HHHHhhcc-CCCCCCcccccccCCCCCCCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNK--IPTGSPLTTIFKVLT--------AAIFNTCK-SKNSSNAVTEVHSSPTCSNESR 229 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 229 (517)
+++.+.++++++.+....+.+++. +|++++.+.....+. ........ ..+. .. .+.
T Consensus 177 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~---------- 243 (489)
T PRK10207 177 NLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVA-NL--VLI---------- 243 (489)
T ss_pred HHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-HH--HHH----------
Confidence 998776666666666665544332 222222221111100 00000000 0000 00 000
Q ss_pred cCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHH-H
Q 010145 230 DEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-T 308 (517)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (517)
...-.....+..+.. +.+ ..++++.+....+++...++|..+.|..+.+..+.. +
T Consensus 244 ------------~~~~i~~~~f~~~~~-----------~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~ 299 (489)
T PRK10207 244 ------------VLSIVVTIIFFREAF-----------KLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINN 299 (489)
T ss_pred ------------HHHHHHHHHHHHHHh-----------cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 000000000000000 111 233555666677788899999999999776666554 5
Q ss_pred hccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 309 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV 388 (517)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~ 388 (517)
.++...|+.++++.++++|++.++++.|+..++.+++.+|. .++++..++.+|+++.+++++.++......
T Consensus 300 ~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~----- 370 (489)
T PRK10207 300 VHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF----- 370 (489)
T ss_pred ccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 77777788899999999999999999999887666665442 237899999999999999987765432100
Q ss_pred hcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010145 389 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 468 (517)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~ 468 (517)
.+ .....+.+|+++.+++.|+||++..|..++++++.+|++++|.++|++++.+++|+.++..+....... .
T Consensus 371 ----~~--~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~--~ 442 (489)
T PRK10207 371 ----AD--AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVP--D 442 (489)
T ss_pred ----cC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c
Confidence 00 012357889999999999999999999999999999999999999999999999999999888765310 0
Q ss_pred CCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 469 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
+..++. ....++..+|...++.+++..++++.+.++.++.
T Consensus 443 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 443 NITDPL-----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred ccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000010 1123467788888888888877777766666543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=306.77 Aligned_cols=416 Identities=16% Similarity=0.216 Sum_probs=306.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+++++.+.|.++.+++++++|+++||++||||+++++.++.+++.++.++++
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~---------------------- 100 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI---------------------- 100 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc----------------------
Confidence 5789999999999999999999999999999945999999999999999999998864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.++++|++.|+|.|+..|+..++++|++|++++ ++|+++++++|++.|+|.++||.+++++.+.+||++.|
T Consensus 101 ---~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f 174 (475)
T TIGR00924 101 ---YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF 174 (475)
T ss_pred ---cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 355788999999999999999999999999997642 24888999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhH----HHH-------HHHHHHHhhccCCCCCCcccccccCCCCCCCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTT----IFK-------VLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 229 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (517)
.+.++.++++++.+...++.+++.++++++.++ ..+ .+....+......+....
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 239 (475)
T TIGR00924 175 NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA--------------- 239 (475)
T ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH---------------
Confidence 998877777777776666655433222221111 000 000001110000000000
Q ss_pred cCCCCcccCCCCCCCCCc---hhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHH-
Q 010145 230 DEGNSNVKEKVPSQKPTE---DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ- 305 (517)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (517)
....... ...+......+ +..+..++++....+++++...++|+.+.|+.+.+..+
T Consensus 240 -----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~ 299 (475)
T TIGR00924 240 -----------NILLMTVTLAVIIFFFRLAFK---------PRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFA 299 (475)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHh---------ccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0000000 00000000000 00111233445567888999999999999999966544
Q ss_pred HHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 306 AATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR 385 (517)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~ 385 (517)
...++.+++++++|++.++++|++.++++.|+.+++..++.||. .+++...|+.+|+++.+++++.+++....
T Consensus 300 ~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k~~~G~~l~~~~~~~~~~~~~~--- 372 (475)
T TIGR00924 300 DNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLKFTLGMLFCGASFLTFAASIWF--- 372 (475)
T ss_pred HHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 46688888889999999999999999999999886654555441 12577788999999999999888765210
Q ss_pred HhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 386 VAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNI 465 (517)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~ 465 (517)
. + +..+.+++|+++++++.++||.+..|..++++.+.+|+++||+++|++.+...+|+.+++.+......
T Consensus 373 -~------~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~- 442 (475)
T TIGR00924 373 -A------D--AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV- 442 (475)
T ss_pred -c------C--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0 0 12357899999999999999999999999999999999999999999999999999999888876531
Q ss_pred cccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 466 TSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
..++..+|...++.+++..++++++.++.+|
T Consensus 443 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 443 ----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred ----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234567888888888887777777766553
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=298.19 Aligned_cols=429 Identities=15% Similarity=0.179 Sum_probs=305.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+++.+++++.+.|....+++++++|+++||++||||++.++.++.++|.++++...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~--------------------- 98 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI--------------------- 98 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc---------------------
Confidence 58899999999999999999999999999999559999999999999999987765421
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
....++++..+.++|.|...|+.+++++|++|++++ +|.+++++.|...|+|+.++|.+++++.+.+||++.|
T Consensus 99 ---~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F 171 (493)
T PRK15462 99 ---HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171 (493)
T ss_pred ---chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence 112355666677788999999999999999997642 3889999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCC-CCCchh--HHHH----HHHH------HHHhhccCCCCCCcccccccCCCCCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIP-TGSPLT--TIFK----VLTA------AIFNTCKSKNSSNAVTEVHSSPTCSNE 227 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~--~~~~----~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (517)
.++++.++++++.++...+.+.+... ++++.+ +... .+.. ............. .+.
T Consensus 172 ~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------- 240 (493)
T PRK15462 172 GLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSV---YAL-------- 240 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------
Confidence 99888888888777776655443211 111111 1000 0000 0000000000000 000
Q ss_pred CCcCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHH-
Q 010145 228 SRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA- 306 (517)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (517)
.... .....+.-.... ...+.+|||++...+++++..++||..+.|.++.+...+
T Consensus 241 -----------~~~~---~~~~~~~~~~~~----------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~ 296 (493)
T PRK15462 241 -----------IVAT---IIGLGVLAKIYR----------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYID 296 (493)
T ss_pred -----------HHHH---HHHHHHHHHHHH----------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 0000 000000000000 012235688899999999999999999999999876665
Q ss_pred HHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 307 ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 386 (517)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~ 386 (517)
++.|++++|+.+|++.+|++|++.++++.|+..++..++.+| +++++...|+.+|+++++++++++......
T Consensus 297 ~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~---- 368 (493)
T PRK15462 297 RFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARW---- 368 (493)
T ss_pred HhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 778999999999999999999999999999988877655433 123789999999999999999888765311
Q ss_pred hhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhc
Q 010145 387 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS-LAMGYYFSTVLVSIVNNI 465 (517)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~-~~ig~~l~~~~~~~~~~~ 465 (517)
. + +...++.+|++..+++.++||.+..|..++++.+.+|++.+|..||++.+. ..+|+.+++.+.......
T Consensus 369 ~------~--~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~ 440 (493)
T PRK15462 369 S------A--MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQA 440 (493)
T ss_pred c------C--CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 0 012378899999999999999999999999999999999999999999885 479999988887765421
Q ss_pred cccCCCCCCccCCCCCcchhhHHHHHHHHHHHHH--HHHHHHHhhccccc
Q 010145 466 TSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLN--FLHFLFWAARYKYS 513 (517)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~--~~~~~~~~~~~~~~ 513 (517)
..+++ . .. ..+..++..+|...+..+++. ++.+.++.+..|.|
T Consensus 441 ~~~~~-~---~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 441 SFDAS-G---AI-NYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred cCCcc-c---cc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10000 0 00 001235677888888777665 34445555555554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=297.51 Aligned_cols=422 Identities=14% Similarity=0.224 Sum_probs=301.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++++++.+.+....+..++++|+++||++|||+++.++.+++++++++++++++
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~--------------------- 110 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH--------------------- 110 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 58899999999999998888888999999999449999999999999999999988632
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
....++++|+++|+|.|...|+..++++|++|++++ +|++.++++|++.|+|+.+||.+++++.+.+|||+.|
T Consensus 111 ---~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F 183 (500)
T PRK09584 111 ---DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF 183 (500)
T ss_pred ---cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 345678899999999999999999999999986541 3567899999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccc--CCCCCchhHHHH------HHHHHHHhh-ccCCCCCCcccccccCCCCCCCCCcC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNK--IPTGSPLTTIFK------VLTAAIFNT-CKSKNSSNAVTEVHSSPTCSNESRDE 231 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (517)
.++.+..+++++.+.+.++.+++. +|++++.+.... ......... ....++.... .+.
T Consensus 184 ~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 250 (500)
T PRK09584 184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARM-ALG------------ 250 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHH-HHH------------
Confidence 998877777766665554444332 122222221110 000000000 0000000000 000
Q ss_pred CCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHH-Hhc
Q 010145 232 GNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMN 310 (517)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (517)
. ............ . .+.+..++++.+..+.+++..+++|..+.|+++.+..+.. ..+
T Consensus 251 -----------~--~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~ 308 (500)
T PRK09584 251 -----------V--VALGIVVIFGKE--------A-FAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVE 308 (500)
T ss_pred -----------H--HHHHHHHHHHHH--------H-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 0 000000000000 0 0112245566667777888999999999999998887764 466
Q ss_pred cCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 311 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 390 (517)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 390 (517)
..+.|+.++++.++++|++.++++.|+.++...++.+| ++...++.+|+++++++++........ .+
T Consensus 309 ~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~-- 375 (500)
T PRK09584 309 HSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----AN-- 375 (500)
T ss_pred ccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cC--
Confidence 67778889999999999999999999887765444333 467889999999999999988775321 00
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 010145 391 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR 470 (517)
Q Consensus 391 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~ 470 (517)
+...++.+|+++.+++.++||++..|..++++.+.+|+++||+++|++.+...+|+.+++.+.......
T Consensus 376 ------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~----- 444 (500)
T PRK09584 376 ------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVP----- 444 (500)
T ss_pred ------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 112467889999999999999999999999999999999999999999999999999988887644210
Q ss_pred CCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 471 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
+-..+.....++++.+|..+++.+++..++.+...++.+
T Consensus 445 --~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 445 --DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred --cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000110111234788888888888766666666555544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=263.56 Aligned_cols=318 Identities=24% Similarity=0.481 Sum_probs=261.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|++++++..+.+.|...+++.+++||+++|+++||+|+++++.++..+|.+++++++. +.. .
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~----------------~ 80 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS----------------G 80 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc----------------c
Confidence 57899999999999999999999999999999999999999999999999999988642 210 0
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN------- 153 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~------- 153 (517)
+..+...++++..+..+|.|+++|+..++.+|++++++ +++|.++|+++|+++|+|+++++.+.+++.+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 11234567899999999999999999999999998654 44599999999999999999999999999743
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCC
Q 010145 154 KGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGN 233 (517)
Q Consensus 154 ~gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (517)
.+|...|.++++.++++++++...++.++..+|.+++.....+++..+.+++....++
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------- 215 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------- 215 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc----------------------
Confidence 3699999999999999999999988888777777776666666666665543211100
Q ss_pred CcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCC
Q 010145 234 SNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL 313 (517)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (517)
.....|++++..+ ...++++++|++++++++++...++|..+.|..+....|...++.++
T Consensus 216 ------------~~~~~~ld~a~~~--------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l 275 (654)
T TIGR00926 216 ------------HWPLHWLDYAKDK--------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDV 275 (654)
T ss_pred ------------ccchhHHHHhccc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCcc
Confidence 0012445444321 12345788899999999999999999999999999999998898888
Q ss_pred CCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 314 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKR 383 (517)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~ 383 (517)
+++.+++..++.+|++.++++.|+.+..++|..+|...+ +++..|+.+|++++++++++.+..+.++
T Consensus 276 ~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 276 GGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred CCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999998888888765433 6889999999999999999888776544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=228.25 Aligned_cols=367 Identities=13% Similarity=0.063 Sum_probs=222.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+|+.+.|.++...+.++.|+++||+ |||+++.++..++.+++++++.++
T Consensus 36 l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a~---------------------- 92 (495)
T PRK14995 36 LGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFSP---------------------- 92 (495)
T ss_pred hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 578899999999999999999999999999995 999999999999999999999985
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCC-cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD-ETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~-~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+.+.++++|+++|+|.++..|.....+.+.++ +++ |+++++++....++|..+||.+++++.+..+||+.
T Consensus 93 ---~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 93 ---TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 56789999999999999999998888888775 444 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHH--------HHHHHhhccCCCCCCcccccccCCCCCCCCCcC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVL--------TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDE 231 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (517)
|++..++.++.+++.....|+.+.++ +++.+.....+ ....++. ....... ...
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~--~~~~~~~--~~~------------ 225 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTA--LKGFLSL--WVT------------ 225 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhc--cccCCch--HHH------------
Confidence 99988877766555444433322211 11222111111 0111110 0000000 000
Q ss_pred CCCcccCCCCCCCCCchhHHHHH-hhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhc
Q 010145 232 GNSNVKEKVPSQKPTEDIKFLNR-ALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMN 310 (517)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (517)
... ....-..-..+... .+.+.|-.+++.+ + .+.........+.. ......... ....+++
T Consensus 226 -----~~~-~~~~~~~l~~f~~~e~~~~~p~~~~~lf-----~-~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~lq 287 (495)
T PRK14995 226 -----SLT-LLTGALLLGLFIRTQLAASRPMIDMRLF-----T-HRIILSGVVMAMTA---MITLVGFEL---LMAQELQ 287 (495)
T ss_pred -----HHH-HHHHHHHHHHHHHHHhcCCCCCcCHHHh-----C-CcccHHHHHHHHHH---HHHHHHHHH---HHHHHHH
Confidence 000 00000000000000 0000000111100 1 11111111111111 111111111 1111111
Q ss_pred cCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 311 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 390 (517)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 390 (517)
...+-.....+.+.....+...+..++..++.++..+ ++.+..|.++.+++.+......
T Consensus 288 ~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~-----------~~~~~~g~~~~~~~~~~l~~~~---------- 346 (495)
T PRK14995 288 FVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGL-----------RLVATGGMALSALSFYGLAMTD---------- 346 (495)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHHHHHHHHHHHHhc----------
Confidence 1111001111222222334444445555555543332 2336677777777766555431
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010145 391 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 464 (517)
Q Consensus 391 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~ 464 (517)
...+.+......++.|+|.+...++....+.+.+|++.++.++++.++.+.+|..+|..+.+.+..
T Consensus 347 --------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 347 --------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred --------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334456677889999999999888999999999999999999999999999999998888764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=236.90 Aligned_cols=364 Identities=32% Similarity=0.524 Sum_probs=239.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCc
Q 010145 37 YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE 116 (517)
Q Consensus 37 k~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~ 116 (517)
+|+++++.++.++|.+++++++..+.. +++.+.+.++++.++.++|+|+++|++.++++||+++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~ 64 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE 64 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc
Confidence 488999999999999998887643321 2334567899999999999999999999999999997
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHhcCCccccc-CCCCCchhH-H
Q 010145 117 TTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK-IPTGSPLTT-I 194 (517)
Q Consensus 117 ~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 194 (517)
++ +++|.++|+++|+++|+|+.+++...+++++++||.+.|+++.+.++++++.++...+.+... +|.+++..+ .
T Consensus 65 ~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~ 141 (372)
T PF00854_consen 65 DD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI 141 (372)
T ss_dssp TT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred cc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence 75 335999999999999999999999999999999999999999999999999999999888887 555555555 2
Q ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCCCCCchhHHHHHhhhcCCC-CCcc-cccchhH
Q 010145 195 FKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPA-YPIV-QCTVKEV 272 (517)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~ 272 (517)
..+.....+++....|.... ++. +.... ..+ ...... ....+......+. ..|. .++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~----~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T PF00854_consen 142 KLVLVAAFKKRKLAVPKGSS--WLD-------WALFQ----YSE--RSIFGI--IVFIRAAVIFFPEIFFWALFCQVQRV 204 (372)
T ss_dssp HHHHHHHHHHHCCCH-HHHH--HHH-------HHHHH----HCC--CCCCCC--CCHHHHHHHHCCCHHHHTTTSSTTTH
T ss_pred HHHHHHHHHHhhcccccchH--HHH-------Hhhhh----hhh--hhhhhh--hhhccchhhhhhhhhhcccCCcccee
Confidence 33333333333322211100 111 00000 000 000000 0000000000000 0111 1234556
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCC-eeeCCCCcCCchhHHHHHHHhhhhhhhhhccccccc
Q 010145 273 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTK 351 (517)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~ 351 (517)
++.|.+.+.++.+.+.+.+++++.+.+.....+...+|..+++ +++|++.++++|++.++++.|+.+++++|+.|+. +
T Consensus 205 ~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~ 283 (372)
T PF00854_consen 205 EELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG-I 283 (372)
T ss_dssp HHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---
T ss_pred eeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc-c
Confidence 7778888888888888999999999888888888888877888 8999999999999999999999999999999832 2
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcc
Q 010145 352 TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 431 (517)
Q Consensus 352 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~ 431 (517)
+ +++..++.+|.+++.+++++.+..+.+|.......+ ..+.+|.++.+++..++|.+..+...+..+|.
T Consensus 284 ~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~ 352 (372)
T PF00854_consen 284 Q---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEF 352 (372)
T ss_dssp -------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred c---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 2 789999999999999999999988876665554433 23447788999999999999999998966666
Q ss_pred cchhhHHHHHHHHHHHH
Q 010145 432 APLSMRSLATSLSWASL 448 (517)
Q Consensus 432 ~P~~~rg~~~gi~~~~~ 448 (517)
+|++..+..+|++....
T Consensus 353 a~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 353 APSRAPSSMMGIWFALS 369 (372)
T ss_dssp TTTT-SSSSTHHHHHHH
T ss_pred hHHhhhHHHHHHHHHHh
Confidence 66666666666655433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=218.14 Aligned_cols=344 Identities=11% Similarity=0.080 Sum_probs=226.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++..+..+.+++++++++++
T Consensus 39 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 95 (390)
T PRK03545 39 FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALAW---------------------- 95 (390)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 588999999999999999999999999999995 999999999999999999999874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|+++|++.+...|...+++.|++|+++ |+++++++....++|..++|.+++.+.+..|||+.|
T Consensus 96 ---~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 96 ---NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 57789999999999999999999999999999877 999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
++.++..++..+..+...|+. +++++. . .+
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~----~~~~~~-~-~~-------------------------------------------- 196 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLL----PSEHSG-S-LK-------------------------------------------- 196 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCC----CCCCcc-h-HH--------------------------------------------
Confidence 998876665544333322211 100000 0 00
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeee-
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP-IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKV- 318 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (517)
+..+ ....+.+..... .+......+... +..... .....+ .+.
T Consensus 197 ---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---l~~~~g-~s~~ 241 (390)
T PRK03545 197 ---------SLPL------------------LFRRPALVSLYLLTVVVVTAHFTAY----SYIEPF---VQQVAG-LSEN 241 (390)
T ss_pred ---------HHHH------------------HHhCcHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHhcC-CCcc
Confidence 0000 000011111111 111111111111 111111 111111 110
Q ss_pred CCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 010145 319 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 398 (517)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (517)
..+.+.....+..++...+. .++.+|.. .+.+..+..+.++++......
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~----g~l~dr~~--------~~~~~~~~~~~~~~~~~l~~~------------------- 290 (390)
T PRK03545 242 FATLLLLLFGGAGIIGSVLF----SRLGNRHP--------SGFLLIAIALLLVCLLLLLPA------------------- 290 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhccc--------hhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 01112222222333333333 33333321 122445555555554433222
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCC
Q 010145 399 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 478 (517)
Q Consensus 399 ~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (517)
..+.+.++...++.|++.....+...+.+.+..| +.|++++|+.+....+|..+|+.+.+.+.+
T Consensus 291 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~-------------- 354 (390)
T PRK03545 291 -ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL-------------- 354 (390)
T ss_pred -hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 1234455666778888887777777788888877 578999999999999999999999998762
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 479 NLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 479 ~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
..+++..|+..+.+.+++.+..++..++.+
T Consensus 355 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
T PRK03545 355 ---HLGLSSIGYVGAALALAALVWSILIFRRFP 384 (390)
T ss_pred ---ccChhHHHHHHHHHHHHHHHHHHHHccccc
Confidence 245677889888888888887777665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=225.52 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=126.0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+.+++.+.+.++..++++++|+++||+ ||||+++.+.++++++.++++.+...-.. ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~-------------~~~~~ 116 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTS-------------IGPDN 116 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccc-------------ccccc
Confidence 67889999999999999999999999999995 99999999999999998888774210000 00011
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--------cc
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DN 153 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~--------~~ 153 (517)
......++++|+++|++.|...|...++++|++|+++ |++++++...+..+|..+++.+++.+. +.
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 1246678999999999999999999999999999887 999999999999999999988776553 35
Q ss_pred cCchhhHHHHHHHHHHHHHHHH
Q 010145 154 KGWQWGFGISTATILLSIPIFL 175 (517)
Q Consensus 154 ~gw~~~f~i~~~~~~~~l~~~~ 175 (517)
++||++|++..+..++.++..+
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 7999999988776665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=216.52 Aligned_cols=359 Identities=14% Similarity=0.065 Sum_probs=226.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..+++++.|+++||+ ||||++..+.++..++.++++++.
T Consensus 45 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 101 (406)
T PRK11551 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATAQAW---------------------- 101 (406)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc----------------------
Confidence 478999999999999999999999999999995 999999999999999988888864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..+++.+++.+.+..+||+.|
T Consensus 102 ---~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 172 (406)
T PRK11551 102 ---DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIF 172 (406)
T ss_pred ---cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 56689999999999999999999999999999877 999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
++.....++..+......|+.+...++++. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------~~----------------------------- 204 (406)
T PRK11551 173 YVGGVGPLLLVPLLMRWLPESRAFAQAAGA-------------------GK----------------------------- 204 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHhccCc-------------------ch-----------------------------
Confidence 987665444433332222211110000000 00
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee-eC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK-VP 319 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 319 (517)
. .....+... ++ ...++........+......+......+ . .++. . +++ ..
T Consensus 205 ~------~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~---~~~~-~-g~s~~~ 256 (406)
T PRK11551 205 Q------RAPVLRALF-----------GE--GRATATLLLWISYFFTLIVLYFLLNWLP----S---LLVG-Q-GLSRSQ 256 (406)
T ss_pred h------hhhhHHHHh-----------hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHh-C-CCChhh
Confidence 0 000000000 00 0011111111111111111111111111 1 1111 1 111 11
Q ss_pred CCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 010145 320 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 399 (517)
Q Consensus 320 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (517)
.+.......+..++...+..++.++..+| +.+..+.+.++++++.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~-------------------- 305 (406)
T PRK11551 257 AGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA-------------------- 305 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc--------------------
Confidence 12223333334444445555555444332 22333444444444333322
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCC
Q 010145 400 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 479 (517)
Q Consensus 400 ~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (517)
.+.+.+.+..++.+++.....+...++..+..|++.|++++|+.+....+|..+++.+.+.+.+.
T Consensus 306 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-------------- 370 (406)
T PRK11551 306 -PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-------------- 370 (406)
T ss_pred -CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc--------------
Confidence 13344555566777777777788888999999999999999999999999999999999887631
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 010145 480 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 515 (517)
Q Consensus 480 ~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~ 515 (517)
.+.+...++..+.+.+++.+..+...+|.+.+++
T Consensus 371 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
T PRK11551 371 --GRSTVGVIGASIPVILVAALAALLLVSRPSRADP 404 (406)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhcchhccCC
Confidence 1334556777777777776666666555544433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=214.07 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=130.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++++++.
T Consensus 24 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 80 (399)
T TIGR00893 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG---------------------- 80 (399)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc----------------------
Confidence 478999999999999999999999999999995 999999999999999999998874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|+|.+...+....++.|++|+++ |++.+++.....++|..++|.+++++.+..+||+.|
T Consensus 81 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 151 (399)
T TIGR00893 81 ---AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF 151 (399)
T ss_pred ---CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHH
Confidence 56789999999999999999999999999999877 999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
++.++..++..+..++
T Consensus 152 ~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 152 IIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9877766555444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=210.92 Aligned_cols=353 Identities=11% Similarity=0.025 Sum_probs=228.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+++.++..+++++.|+++||+ ||||++..+.++++++++.+.++..... .
T Consensus 46 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~ 107 (399)
T PRK05122 46 LGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAA-----------------W 107 (399)
T ss_pred cCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhc-----------------c
Confidence 478899999999999999999999999999995 9999999999999998887766531110 0
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
...++..+++.|+++|+|.+...++...++.|++|+++ |++++++.....++|..+|+.+++++.+.++|++.+
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 181 (399)
T PRK05122 108 PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG 181 (399)
T ss_pred chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 00146689999999999999999999999999998877 999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
++..+..++.++.. .+. ++.++++++
T Consensus 182 ~~~~~~~~~~~~~~---~~~-~~~~~~~~~-------------------------------------------------- 207 (399)
T PRK05122 182 LLIMLLALLGLLLA---RPR-PAVPPVKGE-------------------------------------------------- 207 (399)
T ss_pred HHHHHHHHHHHHHH---hcC-CCCCCCCcc--------------------------------------------------
Confidence 87665544332221 110 110000000
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 320 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
+.++. +..|............ ...+....+...... .+.. .. ..
T Consensus 208 -------~~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~---~~-~~ 251 (399)
T PRK05122 208 -------RLPFR--------------------RVLGRVWPYGMGLALA---SIGFGTIATFITLYY--AARG---WD-GA 251 (399)
T ss_pred -------chhHH--------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHcc---cc-cc
Confidence 00000 0001111110001111 111111111111111 1111 10 11
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
........+..++..++..++.++.. .++.+..+.++++++++.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~--------------------- 299 (399)
T PRK05122 252 ALALTLFGVAFVGARLLFGNLINRLG-----------GLRVAIVSLLVEILGLLLLWLA--------------------- 299 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 11112222333333344344433322 2233556666666666555443
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
.+.+.+++..++.|++.+...|.......+..|++.||+++|+.+....+|..+++.+.+.+.+
T Consensus 300 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------------- 363 (399)
T PRK05122 300 PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---------------- 363 (399)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 1334455667888999888888877788889999999999999999999999998888887752
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 010145 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~~ 516 (517)
..+++..|++.+++.+++++..++..+++++..+|
T Consensus 364 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T PRK05122 364 -WFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398 (399)
T ss_pred -HcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 13467788888888888887777766666655444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=208.73 Aligned_cols=143 Identities=17% Similarity=0.070 Sum_probs=116.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.+|.+++.+.|.++..+++++.|+++||+ |||+++..++.....+ .++..+. +
T Consensus 21 ~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~-~~~~~~~--~------------------- 77 (368)
T TIGR00903 21 IDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAA-AGRLLDP--F------------------- 77 (368)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHH-HHHHHHh--c-------------------
Confidence 578999999999999999999999999999995 9999876555444443 3333321 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
++..++++|+++|+|.|. .++....++|++|+++ |++++++...+.++|..+++.+++++.+.+|||+.|
T Consensus 78 ---~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f 147 (368)
T TIGR00903 78 ---NYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI 147 (368)
T ss_pred ---cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 577899999999999996 4566666799999876 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
.+.++..++..+.+++
T Consensus 148 ~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 148 IPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9866655544444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=223.49 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=125.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+++.+++.++..++++++|+++||+ |||+++++++++++++++++++++
T Consensus 197 ~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~---------------------- 253 (742)
T TIGR01299 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ---------------------- 253 (742)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 467889999999999999999999999999995 999999999999999999998875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN------- 153 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~------- 153 (517)
+++.++++|++.|+|.|+..|+...+++|.+|+++ |++.+++......+|.++++.++.++...
T Consensus 254 ---s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~ 324 (742)
T TIGR01299 254 ---GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM 324 (742)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence 56789999999999999999999999999999877 99999999999999999999877655432
Q ss_pred ------cCchhhHHHHHHHHHHHHHHHHh
Q 010145 154 ------KGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 154 ------~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
.+||+.|++.++..++.++..++
T Consensus 325 g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 325 GSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999887766655544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=210.35 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=123.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..++.+++++.+++++++
T Consensus 39 ~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~---------------------- 95 (393)
T PRK09705 39 SGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP---------------------- 95 (393)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc----------------------
Confidence 578999999999999999999999999999995 999999999999999999999985
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
+++.++++|+++|+|.+...+....++.|++| ++ |+++++++..+.++|..+|+.+++++.+.. +||..
T Consensus 96 ---~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 96 ---QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred ---chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46679999999999999999999999999986 55 999999999999999999999999988764 89998
Q ss_pred HHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIP 172 (517)
Q Consensus 160 f~i~~~~~~~~l~ 172 (517)
+.+..+..++.+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (393)
T PRK09705 166 LAWWALPAVVALF 178 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 8765444444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=214.74 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=122.1
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++++++.+++++++++.+.. ..
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~-------------------~~ 112 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS-------------------PK 112 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc-------------------cc
Confidence 3455778999999999999999999999995 999999999999999999988864210 01
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----------
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------- 152 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~---------- 152 (517)
.++..++++|+++|++.|+..+..+.+++|.+|+++ |+++.++.+...++|..+++.++.++..
T Consensus 113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 186 (502)
T TIGR00887 113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA 186 (502)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 136789999999999999999999999999999988 9999999999999999999988765421
Q ss_pred -------------ccCchhhHHHHHHHHHHHHHH
Q 010145 153 -------------NKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 153 -------------~~gw~~~f~i~~~~~~~~l~~ 173 (517)
.++||++|.+..+..++.++.
T Consensus 187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 248999999877766555444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=201.20 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=137.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..++|+++|.|..+..++.|+-..++|| +-||++++..+.++.+|.+++++++
T Consensus 43 l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp---------------------- 99 (394)
T COG2814 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAP---------------------- 99 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 68999999999999999999999999999999 5999999999999999999999995
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
++++++++|++.|+..|.+.+...++..|..||++ |+++.++...+..++..+|..+|.++.+.+|||..|
T Consensus 100 ---~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 100 ---SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 68899999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 010145 161 GISTATILLSIPIFLLGSP 179 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~ 179 (517)
++-.+..++.++..+...|
T Consensus 171 ~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9887777777666655544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=209.11 Aligned_cols=138 Identities=16% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++.+.
T Consensus 53 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 109 (434)
T PRK11663 53 LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSS---------------------- 109 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHh----------------------
Confidence 578999999999999999999999999999995 999999999999999999998875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|++.|++.|...+...+++.|++|+++ |++++++++.+.++|..++|.+++++.+.++||+.|
T Consensus 110 ---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 110 ---SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 56678899999999999999999999999999877 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHH
Q 010145 161 GISTATILLS 170 (517)
Q Consensus 161 ~i~~~~~~~~ 170 (517)
++.++..++.
T Consensus 181 ~~~~i~~~~~ 190 (434)
T PRK11663 181 MIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHH
Confidence 9877654433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=213.55 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=130.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+.+++.+.|.++..++++++|+++||+ |||+++.++.++++++.+++..+.+ .
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-~------------------- 129 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-G------------------- 129 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-c-------------------
Confidence 468889999999999999999999999999995 9999999999999999988766532 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
++..+++.|+++|++.+...|....++.|++|+++ |+++.++...+.++|..++|.+++++.+.+ +||++
T Consensus 130 ---~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 130 ---GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred ---CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 35679999999999999999999999999999887 999999999999999999999999998874 99999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 010145 160 FGISTATILLSIPIFLLGS 178 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~ 178 (517)
|++.++..++..+.++...
T Consensus 201 f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred hhhhhHHHHHHHHHHHHHh
Confidence 9998877666555544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=216.67 Aligned_cols=373 Identities=16% Similarity=0.138 Sum_probs=223.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+|+.+.+.++..++.++.|+++||+ |||+++.++..++++++++++.++
T Consensus 32 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 88 (485)
T TIGR00711 32 LGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVAP---------------------- 88 (485)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCcC----------------------
Confidence 578899999999999999999999999999995 999999999999999999998874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
++..++++|+++|++.+...|...+++.|.+|+++ |+++++++....++|..+||.+++++.+.++||+.|
T Consensus 89 ---~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 89 ---NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred ---CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 56789999999999999999999999999999877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHH----HHhhccCCCCCCcccccccCCCCCCCCCcCCCCcc
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAA----IFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 236 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (517)
++..+..++.++..++..++.++ .++++.+.....+... ......+.++ +++.++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 220 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPE-----------------RGWFDSNE 220 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCC-----------------CCCCCchH
Confidence 98887766555544443333211 1112222221111100 0000000000 00000000
Q ss_pred cCCCCCCCCCchhHHHHH-hhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCC
Q 010145 237 KEKVPSQKPTEDIKFLNR-ALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS 315 (517)
Q Consensus 237 ~~~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (517)
........-.....+..+ ...+.+..++ +...+++.....+..++.. ..+.......+. +++...+-
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~---~~~~~~g~ 288 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDL-----RLFKYRNFTIGCVYMSLLG----LGLYGSFYLLPL---YLQQVLGY 288 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCH-----HHHcCCChHHHHHHHHHHH----HHHHHHHHHHHH---HHHHhcCC
Confidence 000000000000000000 0000000000 0001111111111111111 111111111111 11111110
Q ss_pred eeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010145 316 LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS 395 (517)
Q Consensus 316 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 395 (517)
.....+.......+..++..++..++.+|.. .++.+..|.++.+++..++....
T Consensus 289 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~-----------~~~~~~~g~~~~~~~~~~~~~~~--------------- 342 (485)
T TIGR00711 289 TALQAGLHILPVGLAPMLSSPIAGRMGDKID-----------PRKLVTIGLILYAVGFYWRAFTF--------------- 342 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------cHHHHHHHHHHHHHHHHHHhccC---------------
Confidence 0011122233334444455555555443332 23346677777777776655210
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010145 396 SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 464 (517)
Q Consensus 396 ~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~ 464 (517)
....+.+.++...++.|++.+...++......+..|++.+|+++|+.++.+.+|+.+|+.+.+.+.+
T Consensus 343 --~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 --TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123455666678889999999888887888899999999999999999999999999998887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=209.36 Aligned_cols=394 Identities=16% Similarity=0.105 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHH
Q 010145 9 ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVML 88 (517)
Q Consensus 9 ~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (517)
+.++++|.+|..++++++|+++||+ |||..++++.++..++.++..++...+ ++.++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~----------------------~~e~l 119 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP----------------------SFEML 119 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHH
Confidence 6789999999999999999999995 999999999999999999988876544 68899
Q ss_pred HHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH--HhhccccCchhhHHHHHHH
Q 010145 89 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VWIEDNKGWQWGFGISTAT 166 (517)
Q Consensus 89 ~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~--g~l~~~~gw~~~f~i~~~~ 166 (517)
+++|++.|+..|......+.|+.|..|++- ||..-.....+.++|.+++..++ ..+...-.|++.+.+..+.
T Consensus 120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~ 193 (485)
T KOG0569|consen 120 ILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP 193 (485)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999888 99999999999999999996665 3344556799999988887
Q ss_pred HHHHHHHHHhc--CCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCCC
Q 010145 167 ILLSIPIFLLG--SPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK 244 (517)
Q Consensus 167 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (517)
.++.++.+.+. +|+|... ++++.+++.+.+...+.+.+.+. + . |.+++ ++++ ...+
T Consensus 194 ~~~~l~~l~~~PESPk~Ll~--~k~~~~~A~~sl~~y~G~~~~~~-~------~--------e~~~~----e~~~-~~~~ 251 (485)
T KOG0569|consen 194 ALLQLALLPFLPESPKYLLI--KKGDEEEARKALKFYRGKEDVEA-E------I--------EEMLR----EIEE-EELE 251 (485)
T ss_pred HHHHHHHHhcCCCCcchHHH--HcCCHHHHHHHHHHHhCCCcchh-H------H--------HHHHH----HHHH-hccc
Confidence 77666655443 3333332 13444444444433332211000 0 0 00000 0000 0000
Q ss_pred CCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCC-c
Q 010145 245 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPAS-L 323 (517)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 323 (517)
+.++.+++|..+. ...|+.+...+.+.+.++.-.......++.......+ ++...+. .
T Consensus 252 ~~~~~sl~~~~~~--------------~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG-------~~~~~a~~a 310 (485)
T KOG0569|consen 252 KKKQISLRQLLKN--------------PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG-------FTPEEAQYA 310 (485)
T ss_pred cccCCcHHHHhcC--------------cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC-------CCHHHHHHH
Confidence 0111112211111 1223333333333333333333222222222211111 1111111 1
Q ss_pred CCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 010145 324 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 403 (517)
Q Consensus 324 ~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (517)
+....++.++...+...++++..||. .+..+..++.+..+.+.......... ....+.
T Consensus 311 n~~~g~v~~~~t~~~~~lid~~gRRp-----------Lll~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~y 368 (485)
T KOG0569|consen 311 NLGIGIVNLLSTLVSPFLIDRLGRRP-----------LLLISLSLMAVALLLMSIALFLSNSF-----------GSWLSY 368 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHH
Confidence 22223333334444455565555542 25666666666666555543211110 001122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcc
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 483 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (517)
..++..+.+.........|..+-+..|.+|++.|+.++++..+.+++.+++-....+.+.+..+
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------------- 432 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------------- 432 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 2233334444444445678888899999999999999999999999999999999988876542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 010145 484 HLERFYWLMCILGGLNFLHFLFWAARYKYSS 514 (517)
Q Consensus 484 ~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~ 514 (517)
.++|..+.+.+++..+..++..++.|+|+
T Consensus 433 --~~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 433 --PYVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred --chhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 24788888899988888888899999875
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=203.27 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=219.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..+++++.|+++||+ ||||++..+.++..++.+....+...+. .
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~ 107 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILPV-----------------S 107 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhcccc-----------------c
Confidence 588999999999999999999999999999995 9999999999888877654333211110 0
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
...+++.++++|+++|+|.+...|+..+++.|.+|+++ |++++++...+.++|..+||.+++++.+.+|||+.+
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~ 181 (392)
T PRK12382 108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA 181 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 01167789999999999999999999999999999877 999999999999999999999999998889999988
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
.+..+..++.+. +.. +.++.+++++.
T Consensus 182 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~-------------------------------------------------- 207 (392)
T PRK12382 182 LTTMVLPLLAWA---FNG-TVRKVPAHAGE-------------------------------------------------- 207 (392)
T ss_pred HHHHHHHHHHHH---HHH-hccCCCCCccc--------------------------------------------------
Confidence 765544332221 111 11110000000
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKI-FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP 319 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (517)
+ + +..+ ..|.+... .........+... ...... +++.. +.. .
T Consensus 208 -~----~--~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~----~~~~~~---~~~~~--~~~-~ 250 (392)
T PRK12382 208 -R----P--SLWS--------------------VVGLIWKPGLGLALQGVGFAVI----GTFVSL---YFASK--GWA-M 250 (392)
T ss_pred -C----c--hHHH--------------------HHHHHHHhHHHHHHHHHHHhHH----HHHHHH---HHHhc--CCc-h
Confidence 0 0 0000 00000000 0011111111111 111111 11110 000 0
Q ss_pred CCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 010145 320 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 399 (517)
Q Consensus 320 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (517)
.........+..++..++..++.++..+| +.+..+..+.+++.+.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~-------------------- 299 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLA-------------------- 299 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHc--------------------
Confidence 11111122222333344444444433322 22556666666666554432
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCC
Q 010145 400 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 479 (517)
Q Consensus 400 ~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (517)
.+.+...+..++.+++.+...|.......+..|++.||++.|+.+....+|+.+++.+.+.+.+
T Consensus 300 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~--------------- 363 (392)
T PRK12382 300 -PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT--------------- 363 (392)
T ss_pred -ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1334555667788898888888887888899999999999999999999999999999988763
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 480 LNHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 480 ~~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
..+|+..|++.+++.+++.++.+++.
T Consensus 364 --~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 364 --SFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred --HhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 13567788988888888877766554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=210.83 Aligned_cols=145 Identities=25% Similarity=0.388 Sum_probs=126.9
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+++.++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 125 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFAL--------------------- 125 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcccc---------------------
Confidence 5588999999999999999999999999995 999999999999999999997764222
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhhccccCchhh
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV---VWIEDNKGWQWG 159 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~---g~l~~~~gw~~~ 159 (517)
+++.++++|+++|+|.|...+...++++|++|+++ |++++++.+.+.++|..+++.++ +.+.+..+||+.
T Consensus 126 -~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 126 -SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred -chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 45689999999999999999999999999999887 99999999999999999999999 777677899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010145 160 FGISTATILLSIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~ 176 (517)
|++.++..++.++..++
T Consensus 199 f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 199 LGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99976655554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=206.55 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=128.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++.+.|.++..+++++.|+++||+ ||||++..+++++.++++++++++
T Consensus 38 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~---------------------- 94 (412)
T TIGR02332 38 LGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFAT---------------------- 94 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 578999999999999999999999999999995 999999999999999999999975
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------cc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NK 154 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~------~~ 154 (517)
+++.++++|+++|++.|...|....++.|++|+++ |++..+++....++|..+++.+++++.+ ..
T Consensus 95 ---~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 95 ---GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred ---CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 56689999999999999999999999999999877 9999999999999999999999998853 36
Q ss_pred CchhhHHHHHHHHHHHHHHHHh
Q 010145 155 GWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
|||+.|.+.++..++..+..++
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 9999999977665544433333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=203.42 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=127.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++.++..+..++.+++..++
T Consensus 43 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------------- 99 (406)
T PRK15402 43 FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ---------------------- 99 (406)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 478899999999999999999999999999995 999999999999999999988864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|+++|++.+...+...+++.|.+|+++ |.+..++......+|..++|.+++++.+..+||+.|
T Consensus 100 ---~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~ 170 (406)
T PRK15402 100 ---SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMF 170 (406)
T ss_pred ---cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 46679999999999999999999999999999876 888889888888899999999999998888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++.++..++..+..+
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 171 VLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 987776665554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=204.08 Aligned_cols=331 Identities=11% Similarity=0.031 Sum_probs=212.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
+.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+..+..++.++.+.+...+
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 88 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVALLG-------------------- 88 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHcC--------------------
Confidence 56788999999999999999999999999995 999999999999999988888764211
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+.+++.++++|+++|++.+...|+..+++.|++|+++ |++.+++.....++|..+||.+++++.+..+||+.|+
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1257789999999999999999999999999999877 9999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCC
Q 010145 162 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP 241 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (517)
+..+..+++.+..+....+...+ +++++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------------------------------------ 193 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAA-SEIQALSN------------------------------------------------ 193 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCC-ccccccch------------------------------------------------
Confidence 87776655544433322110000 00000000
Q ss_pred CCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCC
Q 010145 242 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPI-FMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 320 (517)
Q Consensus 242 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
....+..+. + +...+.+.+...... +.....+..........+.....+.+. ...
T Consensus 194 ----~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 249 (365)
T TIGR00900 194 ----AVLRDTREG---------I-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGS------THY 249 (365)
T ss_pred ----hHHHHHHhH---------H-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch------HHH
Confidence 000000000 0 000001112111111 111111111110111111111011110 011
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.+.....+..++...+..+ +.+|. .....+..+..+.+++++...... +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 299 (365)
T TIGR00900 250 GWVLAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVIGLAILVVGLTP-------------------P 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHHHHHHHHHHhhc-------------------h
Confidence 11222233333333333333 23332 222334555556666655554431 1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 463 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~ 463 (517)
+.+.+.+..++.|++.+...+...++..+..|++.||++.|+.+....++..+++.+.+.+.
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566677788999999999999999999999999999999999999999999999988875
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=211.91 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=123.8
Q ss_pred CCC---chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 2 HFS---PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 2 ~~s---~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
|++ ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++++++
T Consensus 120 ~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------------- 178 (505)
T TIGR00898 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------------- 178 (505)
T ss_pred cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 455 78899999999999999999999999995 999999999999999999998874
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~ 158 (517)
+++.++++|++.|++.++..+....++.|.+|+++ |+++.++...+..+|.+++|.+++++.+ ||+
T Consensus 179 -----~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~ 244 (505)
T TIGR00898 179 -----NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW 244 (505)
T ss_pred -----cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 57789999999999999999999999999999887 9999999999999999999988877753 999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 010145 159 GFGISTATILLSIPIFLL 176 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~ 176 (517)
.|++..+..++..+..++
T Consensus 245 ~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999877766655544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=209.44 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=131.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+|+.+.+.++..++.+++|+++||+ ||||++..+..+++++.+++++++
T Consensus 40 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 96 (471)
T PRK10504 40 LGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALSG---------------------- 96 (471)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHhC----------------------
Confidence 478999999999999999999999999999995 999999999999999998888764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.++++|+++|+|.|...|....++.|.+|+++ |++.+++.....++|..+||.+++++.+..+||+.|
T Consensus 97 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f 167 (471)
T PRK10504 97 ---TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF 167 (471)
T ss_pred ---CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence 46678999999999999999999999999999776 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc
Q 010145 161 GISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~ 180 (517)
.+..+...+..+......++
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99887766655554444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=210.84 Aligned_cols=375 Identities=18% Similarity=0.175 Sum_probs=247.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+++|.+|.+++.++|..|..++++.+|+++||+ |-|+++.++.++.++++++.+.+.+.
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-------------------- 126 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-------------------- 126 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 368899999999999999999999999999995 99999999999999999999998753
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-cCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~gw~~~ 159 (517)
+++.+++.|+++|++.|...|+...+.++|.|+.| |+++.++.+.+..+|.+++-.++|++.+. +||+++
T Consensus 127 ---~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si 197 (466)
T KOG2532|consen 127 ---GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI 197 (466)
T ss_pred ---cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence 34478999999999999999999999999999988 99999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK 239 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (517)
|++.+++.++..+++++.....+.++|.-++ +..+-+ .+++..
T Consensus 198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~--~El~~I---~~~k~~-------------------------------- 240 (466)
T KOG2532|consen 198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISE--KELKYI---EKGKSE-------------------------------- 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCH--HHHHHH---Hhcccc--------------------------------
Confidence 9999998888777777665443333221111 000000 000000
Q ss_pred CCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeee-
Q 010145 240 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKV- 318 (517)
Q Consensus 240 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (517)
...++. +..|| |.+++..++++..+..+.-.........+.+.+++..++ +.+
T Consensus 241 -~~~~~~-------------~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~-f~v~ 294 (466)
T KOG2532|consen 241 -AHVKKK-------------PPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG-FDVR 294 (466)
T ss_pred -cccCCC-------------CCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC-CChh
Confidence 000000 01133 233333333333222222222222222222333332222 111
Q ss_pred CCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 319 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI--GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
..+.+.+++.+...+...+...+.|++.+|..+ ....+|+ .++....++.++..++..
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls----~t~~rkifn~i~~~~~ai~l~~l~~~~---------------- 354 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILS----ETTVRKIFNTIAFGGPAVFLLVLAFTS---------------- 354 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----hHhHHHHHHhHHHHHHHHHHHeeeecC----------------
Confidence 345567788888888888888888888776211 2333344 344555555555555431
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD-APLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWL 475 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~-~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 475 (517)
.-..+..+.. ..++.+..............+ +|++ .+..+|+.++...+..++++.+++.+.+
T Consensus 355 ---~~~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~apq~-a~~l~g~~~~~~~~~~~~~P~~vg~~~~----------- 418 (466)
T KOG2532|consen 355 ---DEHRLLAVIL-LTIAIGLSGFNISGFYKNHQDIAPQH-AGFVMGIINFVGALAGFIAPLLVGIIVT----------- 418 (466)
T ss_pred ---CCcchHHHHH-HHHHHHHcccchhhhHhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHheeeEeC-----------
Confidence 0111112222 222222222222222333334 6755 8999999999999999999999888752
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 476 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 476 ~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
+ + +...|+..|++.+++.+++-++|.++.
T Consensus 419 -~-~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 419 -D-N-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred -C-C-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 1 2 446789999999999999988887774
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=212.40 Aligned_cols=148 Identities=13% Similarity=-0.004 Sum_probs=124.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.|.++..++++++|+++||+ ||||++..++++++++.++.+.....
T Consensus 59 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------------- 117 (467)
T PRK09556 59 YGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------------- 117 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 578999999999999999999999999999995 99999999999988888777663100
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc---Cch
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---GWQ 157 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~---gw~ 157 (517)
...+++.+++.|+++|++.|...|....+++|++|+++ |+++++++..+.++|.++++.+..++.... +||
T Consensus 118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~ 191 (467)
T PRK09556 118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVI 191 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcch
Confidence 01167889999999999999999999999999999988 999999999999999999999887765532 699
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010145 158 WGFGISTATILLSIPIFL 175 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~ 175 (517)
..|.+.++..++..+..+
T Consensus 192 ~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 192 GMFIFPSIIALIIGFIGL 209 (467)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 988886665554333333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=202.57 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=119.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+|+.+.|.++..++.+++|+++||+ ||||+++++..++++++++++++.
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~~~~---------------------- 89 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLMLFGI---------------------- 89 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHHHHH----------------------
Confidence 467788999999999999999999999999995 999999999999999998877753
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+ .++.|+++|++.++..|+..+++.|++|+++ |+++.++.....++|.++||.++|++.+. .|+..+
T Consensus 90 ---~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~ 156 (393)
T PRK11195 90 ---H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAAL 156 (393)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2 3788999999999999999999999999887 99999999999999999999999999874 578777
Q ss_pred HHHHHHHHHHHH
Q 010145 161 GISTATILLSIP 172 (517)
Q Consensus 161 ~i~~~~~~~~l~ 172 (517)
.+.....+++.+
T Consensus 157 ~i~~~~~~~~~~ 168 (393)
T PRK11195 157 AVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHH
Confidence 776655444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=204.83 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=123.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+.+++.+++++++
T Consensus 33 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~---------------------- 89 (377)
T TIGR00890 33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD---------------------- 89 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH----------------------
Confidence 578999999999999999999999999999995 999999999999999999999885
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|+|.+...+.....+.|++| ++ |+++.++.....++|..+++.+.+.+.+..+||+.|
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f 159 (377)
T TIGR00890 90 ---SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF 159 (377)
T ss_pred ---HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence 56789999999999999999888889999886 34 899999999999999987766766676778999999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIF 174 (517)
Q Consensus 161 ~i~~~~~~~~l~~~ 174 (517)
++.++..++..+..
T Consensus 160 ~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 160 IYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877666554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=205.58 Aligned_cols=360 Identities=12% Similarity=0.008 Sum_probs=222.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
+.|..+++++.+.+.++..++.++.|+++||+ ||||++..+..+.+++.++++......
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------- 106 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFLP-------------------- 106 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHcC--------------------
Confidence 45788999999999999999999999999995 999999999998888887765421101
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
..+++.+++.|++.|++.+...++..+++.|.+|+++ |+++.++.+...++|..+||.+++++.+..+|++.|+
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 0156788899999999999999999999999999776 9999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCC
Q 010145 162 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP 241 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (517)
+..+..++..+..+..++ .++++++..+
T Consensus 181 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~------------------------------------------------ 208 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPA----LPPPPQPREH------------------------------------------------ 208 (417)
T ss_pred HHHHHHHHHHHHHHhCCC----CCCCCccccc------------------------------------------------
Confidence 877766655444333211 1110000000
Q ss_pred CCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCC
Q 010145 242 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 321 (517)
Q Consensus 242 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (517)
+..+..+..+ .....+.+.......... .........++ .+.+...+.-....+
T Consensus 209 -----~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p---~~~~~~~g~~~~~~g 262 (417)
T PRK10489 209 -----PLRSLLAGFR--------------FLLASPVVGGIALLGGLL----TMASAVRVLYP---ALADEVWQMGAAQIG 262 (417)
T ss_pred -----chHHHHHHHH--------------HHHcChHHHHHHHHHHHH----HHHHhHHHhhH---HHHHhccCCChhHhH
Confidence 0000000000 000011111111111111 11111111111 112211110000111
Q ss_pred CcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q 010145 322 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 401 (517)
Q Consensus 322 ~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (517)
.+.....+..++...+..++ .+|. ...+.+..+.++.+++++..... .
T Consensus 263 ~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~---------------------~ 310 (417)
T PRK10489 263 LLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM---------------------P 310 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc---------------------c
Confidence 22222333333333333332 2321 22233555666666665544432 1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+.+....++.|++.+...+...++..+..|++.||+++|+.+....+|..+++.+.+.+.+.
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---------------- 374 (417)
T PRK10489 311 MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---------------- 374 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH----------------
Confidence 3344556667788888887788778999999999999999999999999999999999988742
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 515 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~ 515 (517)
.++...++..+++.++..++.+...++.|+++.
T Consensus 375 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 375 -MTPVASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred -hchhhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 223445666666666555555555556555543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=201.19 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=224.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+++..++
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~---------------------- 97 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIAH---------------------- 97 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 478999999999999999999999999999995 999999999999999999988764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+++.|+++|++.+...|+..+++.|.+|+++ |++++++.+...++|..+||.+++++. .++||+.|
T Consensus 98 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f 167 (400)
T PRK11646 98 ---EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC 167 (400)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 56678999999999999999999999999999877 999999999999999999999999998 68999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
++.++..++..+...+..++.+ +++.+ ++.
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~-~~~---------------------------------------------- 197 (400)
T PRK11646 168 ATGAVLFVLAAAFNAWLLPAYK---LSTVR-TPV---------------------------------------------- 197 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccc---ccccc-hhh----------------------------------------------
Confidence 9887765554433332222110 00000 000
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 320 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
..++.+ ...+ +.++.... ....++....+.....+. +.+...+ .....
T Consensus 198 -------~~~~~~-----------------~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~p~---~~~~~~~-~~~~~ 245 (400)
T PRK11646 198 -------REGMTR-----------------VLRD-KRFVTYVL---TLTGYYMLAVQVMLMLPI---MVNDIAG-SPSAV 245 (400)
T ss_pred -------HHHHHH-----------------HHcC-chHHHHHH---HHHHHHHHHHHHHHhhhh---hHHhhcC-CchHH
Confidence 000000 0011 11111111 111112222222111111 1111100 00001
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.+..+..+...... ....++.+|+ ....+++..+.++.+++++..+...
T Consensus 246 g~l~~~~~~~~~~~~----~~~~~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~-------------------- 295 (400)
T PRK11646 246 KWMYAIEACLSLTLL----YPIARWSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS-------------------- 295 (400)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHHhh--------------------
Confidence 111122222222111 1222222221 2333446677777777766555431
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
+.+.++...++.+++++...|...++..+.+|++.||+++|+.++...+|..+|+.+.+.+.+..+..
T Consensus 296 -~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~----------- 363 (400)
T PRK11646 296 -NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL----------- 363 (400)
T ss_pred -hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-----------
Confidence 23344445567788888888999899999999999999999999999999999999999987543110
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
+.....|+..+++.++..+......++.|
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK11646 364 --NQPELPWMMLGIIGLITLLALYWQFSQKR 392 (400)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHhhch
Confidence 11234566666677666655554343333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=198.93 Aligned_cols=141 Identities=12% Similarity=0.185 Sum_probs=128.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+.+++.+++++++
T Consensus 33 ~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~---------------------- 89 (382)
T PRK10091 33 VGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSS---------------------- 89 (382)
T ss_pred cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhC----------------------
Confidence 478899999999999999999999999999995 999999999999999999999874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|+++|++.|...+....++.|++|+++ |++.+++...+.++|..++|.+++++.+..+||+.|
T Consensus 90 ---~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f 160 (382)
T PRK10091 90 ---SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF 160 (382)
T ss_pred ---cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHH
Confidence 57789999999999999999999999999998766 899999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPI 173 (517)
Q Consensus 161 ~i~~~~~~~~l~~ 173 (517)
++.++..++..+.
T Consensus 161 ~~~~~~~~~~~~~ 173 (382)
T PRK10091 161 LLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9887765554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-21 Score=202.49 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=114.6
Q ss_pred CCchhhHHHHHHHHHHHH---HhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 3 FSPSSSANIVTNFMGTAF---LLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~---l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
.+..+.+++.+.|..+.. ++.+++|+++||+ ||||++.+++.++++++++++++++....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~---------------- 119 (432)
T PRK10406 57 NTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGYETI---------------- 119 (432)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCchhH----------------
Confidence 344455555566655555 8999999999995 99999999999999999999997532100
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-------- 151 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~-------- 151 (517)
-..+...+++.|+++|+|.|+..|...++++|++|+++ |+++.++.+...+.|.++++.++..+.
T Consensus 120 -~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 192 (432)
T PRK10406 120 -GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAEL 192 (432)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 00124579999999999999999999999999999887 999999999999999998887765553
Q ss_pred cccCchhhHHHHHHHHHHH
Q 010145 152 DNKGWQWGFGISTATILLS 170 (517)
Q Consensus 152 ~~~gw~~~f~i~~~~~~~~ 170 (517)
..+|||++|++.++..++.
T Consensus 193 ~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 193 REWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 2579999999877765544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=202.54 Aligned_cols=143 Identities=10% Similarity=0.088 Sum_probs=118.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.|..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.++++++....
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~-------------------- 117 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT-------------------- 117 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc--------------------
Confidence 67889999999999999999999999999995 999999999999999999888763111
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHhhccccCchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~ig~~i~g~l~~~~gw~~~f 160 (517)
.+++.+++.|++.|++.|...|.....+.|++|+++ |++++++++.+.++|. +.+|.++..+....+||+.|
T Consensus 118 -~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f 190 (452)
T PRK11273 118 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAAL 190 (452)
T ss_pred -ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHH
Confidence 146678999999999999999988899999999877 9999999999999986 45665543333345999999
Q ss_pred HHHHHHHHHHHH
Q 010145 161 GISTATILLSIP 172 (517)
Q Consensus 161 ~i~~~~~~~~l~ 172 (517)
++.++..++..+
T Consensus 191 ~i~~~~~~~~~~ 202 (452)
T PRK11273 191 YMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHHH
Confidence 987766554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=204.27 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=124.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.++++++++++.
T Consensus 48 ~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------------- 104 (426)
T PRK12307 48 LGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLAS---------------------- 104 (426)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 478999999999999999999999999999995 999999999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|+++|+|.|...+....++.|.+|+++ |+++.++...+.++|.++++.+.+++.+..+||+.|
T Consensus 105 ---~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 105 ---GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 56789999999999999999999999999999887 999999999999999999999999998889999999
Q ss_pred HHHHHH
Q 010145 161 GISTAT 166 (517)
Q Consensus 161 ~i~~~~ 166 (517)
++....
T Consensus 176 ~i~~~~ 181 (426)
T PRK12307 176 FVGLLP 181 (426)
T ss_pred HHHHHH
Confidence 986543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=205.21 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHH
Q 010145 12 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG 91 (517)
Q Consensus 12 ~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (517)
.+++.++..+++++.|+++||+ |||+++.++++++++++++++++++...+ | -+....+++.
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~~~~~~--------g---------~~a~~~l~~~ 124 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIPSYATI--------G---------IWAPILLLLC 124 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcccHHHH--------H---------HHHHHHHHHH
Confidence 4677788999999999999995 99999999999999999999998532200 0 0011248999
Q ss_pred HHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--------cccCchhhHHHH
Q 010145 92 LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGIS 163 (517)
Q Consensus 92 r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~--------~~~gw~~~f~i~ 163 (517)
|+++|+|.|+..|+..++++|++|+++ |++..++...+.++|..+|+.+...+. ..+|||++|++.
T Consensus 125 R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~ 198 (490)
T PRK10642 125 KMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIA 198 (490)
T ss_pred HHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHH
Confidence 999999999999999999999999887 999999999888888888886654442 258999999997
Q ss_pred HHHHHHHH
Q 010145 164 TATILLSI 171 (517)
Q Consensus 164 ~~~~~~~l 171 (517)
.+..++++
T Consensus 199 ~~~~l~~~ 206 (490)
T PRK10642 199 LPLGIIGL 206 (490)
T ss_pred HHHHHHHH
Confidence 76555433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=202.34 Aligned_cols=141 Identities=22% Similarity=0.396 Sum_probs=128.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++.+++.+++.+++
T Consensus 27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------------- 83 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFAS---------------------- 83 (352)
T ss_dssp STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhhh----------------------
Confidence 478999999999999999999999999999995 999999999999999977776652
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.++++|++.|++.+...++..+++.|++|+++ |++.+++.....++|..++|.+++++.+..+||+.|
T Consensus 84 ---~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 84 ---NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred ---hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 45589999999999999999999999999999977 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPI 173 (517)
Q Consensus 161 ~i~~~~~~~~l~~ 173 (517)
++.++..++..++
T Consensus 155 ~~~~~~~~~~~il 167 (352)
T PF07690_consen 155 LISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchhhhhhhh
Confidence 9988887776554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-21 Score=197.60 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=128.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++++.+.++..++.++.|+++||+ ||||++..+.++.+++.++++.++
T Consensus 50 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~---------------------- 106 (394)
T PRK10213 50 LGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN---------------------- 106 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC----------------------
Confidence 478999999999999999999999999999995 999999999999999999988864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|+++|++.|...|...+++.|++|+++ |+++.++.....++|..+||.+++++.+.++||+.|
T Consensus 107 ---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 107 ---SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 57789999999999999999999999999999877 999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHH
Q 010145 161 GISTATILLSIP 172 (517)
Q Consensus 161 ~i~~~~~~~~l~ 172 (517)
++.++..++.++
T Consensus 178 ~~~~~l~~~~~l 189 (394)
T PRK10213 178 NAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHH
Confidence 987766554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=201.35 Aligned_cols=347 Identities=14% Similarity=0.104 Sum_probs=218.1
Q ss_pred hHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHH
Q 010145 8 SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVM 87 (517)
Q Consensus 8 ~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (517)
++++.+.+.++..++.++.|+++||+ |||+.+..+..+.+++.++++.+. +++.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 109 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLMGLAQ-------------------------NIWQ 109 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHHHHHh-------------------------hHHH
Confidence 48899999999999999999999995 999999999999999988887764 5678
Q ss_pred HHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 010145 88 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 167 (517)
Q Consensus 88 l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~ 167 (517)
+++.|++.|++.+ ..+....++.|++|+++ |++..++.....++|..++|.+++++.+..+||+.|++..+..
T Consensus 110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 182 (408)
T PRK09874 110 FLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL 182 (408)
T ss_pred HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999865 46888889999998776 9999999999999999999999999988889999999887766
Q ss_pred HHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCCCCCc
Q 010145 168 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE 247 (517)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (517)
++..+..++..++... +.+++..... +
T Consensus 183 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~-------------------------------------------- 209 (408)
T PRK09874 183 FLCFLVTLFCIRENFQ--PVSKKEMLHM-------R-------------------------------------------- 209 (408)
T ss_pred HHHHHHHHHHhccCcc--cccchhhhHH-------H--------------------------------------------
Confidence 6554443332221110 0000000000 0
Q ss_pred hhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCcCCch
Q 010145 248 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP 327 (517)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
+..+. .++++.++..... ............+.+..................+.+..+.
T Consensus 210 --~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 267 (408)
T PRK09874 210 --EVVTS-----------------LKNPKLVLSLFVT---TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVP 267 (408)
T ss_pred --HHHHh-----------------CcCCchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 00000 0001111111111 1111111111112111111111100000000001111122
Q ss_pred hHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHH
Q 010145 328 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 407 (517)
Q Consensus 328 ~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 407 (517)
.+..++..+...++.+|..+| +.+..+.++.+++++..... .+.+.+.
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 315 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFV---------------------QTPLQLG 315 (408)
T ss_pred HHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHh---------------------ccHHHHH
Confidence 223333333334444333322 23455555555544443332 1334555
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhH
Q 010145 408 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLER 487 (517)
Q Consensus 408 ~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (517)
+..++.|++.+...|...+...+..|++.+|+..++.+....+|..+++.+.+.+.+ ..+|+.
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~-----------------~~g~~~ 378 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA-----------------NYGFRA 378 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh-----------------hcchhH
Confidence 666778999999999998899999999999999999999999999999999988752 134677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 010145 488 FYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 488 ~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
.|++.+++.+++.+..++..+|.+
T Consensus 379 ~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 379 VFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999988888777666554444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=200.26 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=125.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++++++
T Consensus 42 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 98 (405)
T TIGR00891 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFAP---------------------- 98 (405)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 478999999999999999999999999999995 999999999999999999998874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC--chh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQW 158 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g--w~~ 158 (517)
+++.++++|++.|++.+...+...+++.|++|+++ |+++.++.....++|..+++.+++.+.+..+ ||+
T Consensus 99 ---~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~ 169 (405)
T TIGR00891 99 ---GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRA 169 (405)
T ss_pred ---cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 56789999999999999999999999999999877 9999999999999999999999998877665 999
Q ss_pred hHHHHHHHHHHHH
Q 010145 159 GFGISTATILLSI 171 (517)
Q Consensus 159 ~f~i~~~~~~~~l 171 (517)
.|.+..+..++.+
T Consensus 170 ~f~~~~~~~~~~~ 182 (405)
T TIGR00891 170 LFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 9998766555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-21 Score=195.74 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++..+..+.+++.++++.++
T Consensus 35 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 91 (385)
T TIGR00710 35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALSN---------------------- 91 (385)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 478899999999999999999999999999995 999999999999999999988874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+..+||+.|
T Consensus 92 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 92 ---NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred ---cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 56689999999999999999999999999999777 999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
++..+..++..+..++
T Consensus 163 ~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 163 AFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9877666555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=194.07 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=128.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.+++++.++.|.++..+++++.|+++||+ |||+++..+..++++++++++.++
T Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~---------------------- 102 (413)
T PRK15403 46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT---------------------- 102 (413)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 478889999999999999999999999999995 999999999999999999999874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|+++|++.+...+....++.|.+|+++ |++.+++.....++|..+||.+++++.+..|||+.|
T Consensus 103 ---~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 103 ---SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 56789999999999998877888888999999877 899999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++.++..+++++..+
T Consensus 174 ~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 174 AIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988877666654433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=193.69 Aligned_cols=320 Identities=20% Similarity=0.258 Sum_probs=233.8
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.++++.+++.+.+.++..++.++.|+++||+ ||||.+.++..+..++.++...+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~~----------------------- 85 (352)
T cd06174 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFAS----------------------- 85 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhc-----------------------
Confidence 67889999999999999999999999999995 999999999999999999988873
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+++.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+..+||+.|+
T Consensus 86 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
T cd06174 86 --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157 (352)
T ss_pred --cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56789999999999999999999999999999877 9999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCC
Q 010145 162 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP 241 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (517)
+..+..++..+...+.. +
T Consensus 158 ~~~~~~~~~~~~~~~~~-----------------~--------------------------------------------- 175 (352)
T cd06174 158 ILAILGLLLALLLLFLL-----------------R--------------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHH-----------------H---------------------------------------------
Confidence 88777665554433221 0
Q ss_pred CCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCC
Q 010145 242 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 321 (517)
Q Consensus 242 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (517)
.+... ..................... .+...+......+
T Consensus 176 -----------------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 214 (352)
T cd06174 176 -----------------------------------LLLLL---ALAFFLLSFGYYGLLTYLPLY---LQEVLGLSAAEAG 214 (352)
T ss_pred -----------------------------------HHHHH---HHHHHHHHhHHHHHHHHHHHH---HHHhcCCCHHHHH
Confidence 00000 000001111111111111111 0100000011112
Q ss_pred CcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q 010145 322 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 401 (517)
Q Consensus 322 ~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (517)
.......+...+..++..++.+|..+|. . .+..+..+..++.+......
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~i~~~~~~~~~--------------------- 263 (352)
T cd06174 215 LLLSLFGLGGILGALLGGLLSDRLGRRR-------L---LLLIGLLLAALGLLLLALAP--------------------- 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H---HHHHHHHHHHHHHHHHHHhc---------------------
Confidence 2334444555555555555554443331 0 46777777777777666541
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+......++.+++.+...+...++..|..|++.|++.+|+.+....++..+++.+.+.+.+
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~----------------- 326 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD----------------- 326 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 356677788899999999999999999999999999999999999999999999999988752
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 010145 482 HYHLERFYWLMCILGGLNFLHFL 504 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~ 504 (517)
..+++..|++.+++.+++.+.++
T Consensus 327 ~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 327 TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred ccCcchHHHHHHHHHHHHHHHhe
Confidence 13456678888888888776554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=199.11 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=105.9
Q ss_pred HHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHH
Q 010145 16 MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 95 (517)
Q Consensus 16 ~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 95 (517)
.++..++.++.|+++||+ |||+++..+++++++++++++++++.... ..+....+++.|+++
T Consensus 74 ~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~R~l~ 135 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFSTI-----------------GWWAPVLLVTLRAIQ 135 (438)
T ss_pred HHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHHH-----------------HHHHHHHHHHHHHHH
Confidence 345667888899999995 99999999999999999999998542200 000123688999999
Q ss_pred HHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--------cccCchhhHHHHHHHH
Q 010145 96 ALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATI 167 (517)
Q Consensus 96 G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~--------~~~gw~~~f~i~~~~~ 167 (517)
|++.|+..|....++.|++|+++ |++..+....+..+|..++..+..++. ..+|||++|++.++..
T Consensus 136 G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 136 GFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred HhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 99999999999999999999887 999999999999999999887776654 2579999999877654
Q ss_pred HH
Q 010145 168 LL 169 (517)
Q Consensus 168 ~~ 169 (517)
++
T Consensus 210 l~ 211 (438)
T PRK09952 210 LI 211 (438)
T ss_pred HH
Confidence 43
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=192.92 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=117.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHH-HHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVI-SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~-~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..+.+++.+.+.++..+..++.|+++||+ ||||.+.. +..+..++.++++.++
T Consensus 28 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~--------------------- 85 (375)
T TIGR00899 28 VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWNR--------------------- 85 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 578999999999999999999999999999995 99987665 5555566777777764
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA--FFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~--~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
+++.+++.|+++|.+.+...|...+++.|..|+++ |++ ..++.+...++|..+||.+++++.+.++||
T Consensus 86 ----~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~ 155 (375)
T TIGR00899 86 ----NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFT 155 (375)
T ss_pred ----hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccH
Confidence 56678889999998888888988888888876554 443 367888888999999999999999889999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 010145 158 WGFGISTATILLSIPIFLL 176 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~ 176 (517)
+.|++.++..++..+..++
T Consensus 156 ~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 156 VMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999987766655444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=192.29 Aligned_cols=140 Identities=20% Similarity=0.212 Sum_probs=125.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+..+.+++.++..++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 103 (398)
T TIGR00895 47 WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT---------------------- 103 (398)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc----------------------
Confidence 478889999999999999999999999999995 999999999999999998888764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|++.|++.+...+...+++.|++|+++ |++.+++.....++|..+++.+++++.+..+|++.|
T Consensus 104 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 174 (398)
T TIGR00895 104 ---NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174 (398)
T ss_pred ---chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence 46678999999999999999999999999999776 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHH
Q 010145 161 GISTATILLSIP 172 (517)
Q Consensus 161 ~i~~~~~~~~l~ 172 (517)
++.++..++..+
T Consensus 175 ~~~~~~~~~~~~ 186 (398)
T TIGR00895 175 YVGGIAPLLLLL 186 (398)
T ss_pred hhhhhHHHHHHH
Confidence 987544443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=191.06 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.+++|+++||+ |||+++..+..+..++.+++..+.
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------------------- 77 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------------------- 77 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 478999999999999999999999999999995 999999999999999999998874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|++.|++.+...+...+++.|++|+++ |++.+++.+...++|..++|.+++++.+..+||+.|
T Consensus 78 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 148 (377)
T PRK11102 78 ---TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIF 148 (377)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 46678999999999999999999999999999877 999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIF 174 (517)
Q Consensus 161 ~i~~~~~~~~l~~~ 174 (517)
++.+...++..+..
T Consensus 149 ~~~~~~~~~~~~~~ 162 (377)
T PRK11102 149 WVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHH
Confidence 98777665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=196.65 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=127.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ |||+++..+..+.+++.++.++++
T Consensus 25 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 81 (379)
T TIGR00881 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST---------------------- 81 (379)
T ss_pred hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh----------------------
Confidence 478999999999999999999999999999995 999999999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHH-HHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV-TFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~-~i~g~l~~~~gw~~~ 159 (517)
+++.++++|++.|++.+...|...+++.|++|+++ |++.+++...+.++|..++| .+++.+.+..+||+.
T Consensus 82 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 82 ---SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred ---hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 56789999999999999999999999999999877 99999999999999999999 577777777899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPIFL 175 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~ 175 (517)
|++.++..++..+..+
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 153 FIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9987766554443333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=192.05 Aligned_cols=140 Identities=11% Similarity=0.162 Sum_probs=123.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++.+.+.++..++.+++|+++||+ ||||++.++.++..++.+++++++
T Consensus 37 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~~---------------------- 93 (394)
T PRK03699 37 FNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFSH---------------------- 93 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcc----------------------
Confidence 478999999999999999999999999999995 999999999999999999998864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~-~~~gw~~~ 159 (517)
+++.++++|+++|++.|...+...+++.|.+|+++ |++..+..+...++|..++|.+.+++. +..+||++
T Consensus 94 ---~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 94 ---SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred ---hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 56789999999999999999999999999998766 999999888888999999999988775 45799999
Q ss_pred HHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIP 172 (517)
Q Consensus 160 f~i~~~~~~~~l~ 172 (517)
|.+.++..++..+
T Consensus 165 f~~~~~~~~~~~~ 177 (394)
T PRK03699 165 YACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9987666554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=197.58 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=124.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+++++.+.+.++..+++++.|+++|| +|||+++.++.++..++.++.++++
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~---------------------- 94 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVN---------------------- 94 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHh----------------------
Confidence 48899999999999999999999999999999 5999999999999999998888874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|.+.|.+.+...|+...+..|.+|+++ |++.+++.+...++|.++||.+++++.. .+|+.+|
T Consensus 95 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f 164 (395)
T PRK10054 95 ---NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF 164 (395)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence 45677888999998888889999999999998776 9999999999999999999999999875 7999999
Q ss_pred HHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPI 173 (517)
Q Consensus 161 ~i~~~~~~~~l~~ 173 (517)
.+.++..++.++.
T Consensus 165 ~~~~~~~~i~~i~ 177 (395)
T PRK10054 165 WLAAICSAFPLVF 177 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=202.11 Aligned_cols=398 Identities=14% Similarity=0.115 Sum_probs=242.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
+.+|+.+++.+++.+++++.|+++|++ |||++++.+.+++.+|++++++|. ++.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-------------------------~~~ 143 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-------------------------SWY 143 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh-------------------------hHH
Confidence 458999999999999999999999995 999999999999999999999995 677
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-cCchhhHHHHHH
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTA 165 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~gw~~~f~i~~~ 165 (517)
+++++|++.|+|.|+....++.|++|..|++. |+...+..+...++|..++..++....+. ++||..+++..+
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i 217 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALI 217 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999887 99999999999999999996666555443 589999987776
Q ss_pred HHHHHHHHHHhc--CCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCC
Q 010145 166 TILLSIPIFLLG--SPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 243 (517)
Q Consensus 166 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 243 (517)
..++..+..++. .|++..+ ..+..+..+.+......+ ..+... ++. . +
T Consensus 218 ~~~~~~~~~~~~pesp~~L~~---~g~~~~a~~~l~~l~g~~---~~~~~~--~~~-------------------~---~ 267 (513)
T KOG0254|consen 218 PAVILALGMLFLPESPRWLIE---KGRLEEAKRSLKRLRGLS---PEDVEV--ELE-------------------L---L 267 (513)
T ss_pred HHHHHHHHHHhCCCChHHHHH---cCChHHHHHHHHHHhCCC---CcchHH--HHH-------------------H---H
Confidence 655544443332 2222222 122223333322222211 000000 000 0 0
Q ss_pred CCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCc
Q 010145 244 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 323 (517)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (517)
. ..........+....|+.+.. ...+|+......+..++++.......+++..+.+....+. +....
T Consensus 268 ~----~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-------~~~~~ 334 (513)
T KOG0254|consen 268 K----IKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-------DTFLA 334 (513)
T ss_pred H----HHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-------chHHH
Confidence 0 000000000000000111111 1223444444445455554333333333333222222221 11112
Q ss_pred CCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 010145 324 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 403 (517)
Q Consensus 324 ~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (517)
..+..+...+...+...++|++.||. .+..|...+.+++++.+........ ..+ .......
T Consensus 335 ~~~~~~v~~~~t~~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~---~~~-----~~~~~~~ 395 (513)
T KOG0254|consen 335 SIILGVVNFLGTLVATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALY---YPN-----SSKGAGW 395 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhcc---CCC-----cccchhH
Confidence 22223333333344446666665543 3788888898988887766422100 000 0112334
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcc
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 483 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (517)
..++...++.........|..+.+..|..|.+.|+++.++....++..+++-........+..
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------- 458 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------- 458 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 445555555555556667777789999999999999999999999999988766666554211
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHhhcccccCC
Q 010145 484 HLERFYWLMCILGGLNFL-HFLFWAARYKYSST 515 (517)
Q Consensus 484 ~~~~~f~~~~~l~lv~~~-~~~~~~~~~~~~~~ 515 (517)
+....|+.+++.+.+... ..+++.++.|.++.
T Consensus 459 ~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 459 GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred cccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 013356666666666666 66777888887753
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=197.97 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=123.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.+++|+++|| +|||++++.+.+++.++++++++++
T Consensus 49 ~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------------- 105 (455)
T TIGR00892 49 FQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------------- 105 (455)
T ss_pred hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------------
Confidence 47899999999999999999999999999999 5999999999999999999998875
Q ss_pred CCchhHHHH-HHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLF-AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~-~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+.+.++ ..|++.|++.|...+...+++.|+++ ++ |+++.++.+.+.++|..++|.+++++.+.+|||+.
T Consensus 106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 344555 45799999999877777788889885 45 99999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010145 160 FGISTATILLSIPIFLLG 177 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~ 177 (517)
|++.++..+++.+..++.
T Consensus 176 f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999887766555444443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=194.54 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=124.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.|.++.+++.+.+.++..+++++.|+++||+ |||+.+.++.++.+++.++.+..+...
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 115 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT-------------------- 115 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc--------------------
Confidence 78999999999999999999999999999995 999999999999999988877653211
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccccCchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI-EDNKGWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l-~~~~gw~~~f 160 (517)
.+...+++.|++.|++.|...+....++.|++|+++ |++++++++...++|..+++.+.+.+ ....+||..|
T Consensus 116 -~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f 188 (438)
T TIGR00712 116 -SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAAL 188 (438)
T ss_pred -chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Confidence 146678899999999999999999999999999888 99999999999999999998877654 4457999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
++.++..++..+..++
T Consensus 189 ~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 189 YFPAICAIIVALFAFA 204 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887776654443333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=186.77 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=115.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+++++.+.+.++..+++++.|+++||+ ||||++..+..+..++.++++.++
T Consensus 36 ~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~~---------------------- 92 (381)
T PRK03633 36 EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLMV---------------------- 92 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 478999999999999999999999999999995 999999999999999999988874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|+++|++.+...|...+.+.|..++++ |++.++++....++|..+||.+++++.+...|...+
T Consensus 93 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 ---GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 56789999999999999999998888888888766 999999999999999999999999997754444444
Q ss_pred H
Q 010145 161 G 161 (517)
Q Consensus 161 ~ 161 (517)
.
T Consensus 164 ~ 164 (381)
T PRK03633 164 V 164 (381)
T ss_pred H
Confidence 3
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-19 Score=183.65 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=123.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++..+..++.++...++
T Consensus 38 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~---------------------- 94 (394)
T PRK11652 38 LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFAH---------------------- 94 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 478999999999999999999999999999995 999999999999999999888764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.+++.|++.|++.+...+....+..|.+++++ |++..++...+..+|..++|.+++++.+..+||+.|
T Consensus 95 ---~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f 165 (394)
T PRK11652 95 ---SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY 165 (394)
T ss_pred ---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 56789999999999999988888889999888766 889999999999999999999999998888999999
Q ss_pred HHHHHHHHHH
Q 010145 161 GISTATILLS 170 (517)
Q Consensus 161 ~i~~~~~~~~ 170 (517)
++.++..++.
T Consensus 166 ~~~~~~~~~~ 175 (394)
T PRK11652 166 LFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHH
Confidence 9876655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=192.29 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=108.6
Q ss_pred CCCchhhHHHH-HHHHHHH-----HHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 2 HFSPSSSANIV-TNFMGTA-----FLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 2 ~~s~~~~~~i~-s~f~~~~-----~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
+.++.+.+++. +....+. .+++++.|+++||+ ||||.+..+..++++++++++++++.+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~----------- 113 (434)
T PRK15075 46 FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYATIG----------- 113 (434)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCCcHHHHH-----------
Confidence 55666655443 3322222 35789999999995 999999999999999999999985322000
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc----
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE---- 151 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~---- 151 (517)
......++++|+++|++.|...|....+++|++|+++ |++..++.....++|..+++.+++.+.
T Consensus 114 ------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~ 181 (434)
T PRK15075 114 ------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLS 181 (434)
T ss_pred ------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0001257899999999999999999999999999887 999999999998888888888877662
Q ss_pred ----cccCchhhHHHHHH
Q 010145 152 ----DNKGWQWGFGISTA 165 (517)
Q Consensus 152 ----~~~gw~~~f~i~~~ 165 (517)
+.+|||++|++...
T Consensus 182 ~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 182 PAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHhccchHHHHHHHHH
Confidence 46899999997644
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-19 Score=183.71 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=116.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.|.++..++.+++|+++||+ ||||++..+..+++++.+++.......
T Consensus 43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~~~~------------------- 102 (402)
T TIGR00897 43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFGLGH------------------- 102 (402)
T ss_pred hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 478999999999999999999999999999995 999999999999999887664321000
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~ig~~i~g~l~~~~gw~~~ 159 (517)
.++..+++.|++.|+|.+...+...+.+.|.+|+++ |+++.++.+.+.++|. .++|.+++++.+.+||+..
T Consensus 103 --~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~ 174 (402)
T TIGR00897 103 --ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNT 174 (402)
T ss_pred --ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 046678899999999999988888899999999877 9999999999999996 6899999999888897766
Q ss_pred HHHHHHH
Q 010145 160 FGISTAT 166 (517)
Q Consensus 160 f~i~~~~ 166 (517)
++.....
T Consensus 175 ~~~~~~~ 181 (402)
T TIGR00897 175 LWSALAF 181 (402)
T ss_pred HHHHHHH
Confidence 6654433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-20 Score=193.90 Aligned_cols=142 Identities=8% Similarity=0.050 Sum_probs=117.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.++.+++.+.+.++..++++++|+++||+ |||+++..+.++++++.++++++.
T Consensus 66 ~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~---------------------- 122 (476)
T PLN00028 66 LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLVS---------------------- 122 (476)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 578999999999999999999999999999995 999999999999999998888874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-------- 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-------- 152 (517)
+...+++.|+++|++.+... ....+++|++|+++ |++++++.....++|..+++.+.+.+..
T Consensus 123 ---s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 123 ---SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred ---CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 45678899999999998754 45668899999887 9999999988888888888776655421
Q ss_pred -ccCchhhHHHHHHHHHHHHHHHH
Q 010145 153 -NKGWQWGFGISTATILLSIPIFL 175 (517)
Q Consensus 153 -~~gw~~~f~i~~~~~~~~l~~~~ 175 (517)
..|||+.|++.+++.++..+..+
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Confidence 25899999988776655444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-19 Score=183.40 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=127.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.+++|+++||+ |||+++..+..+..++.++++.+.
T Consensus 36 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 92 (401)
T PRK11043 36 LQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE---------------------- 92 (401)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 478999999999999999999999999999995 999999999999999999888864
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|+++|+|.+...+...+++.|.+|+++ +++.++......++|..++|.+++++.+..+||+.|
T Consensus 93 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~ 163 (401)
T PRK11043 93 ---SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIF 163 (401)
T ss_pred ---CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 56689999999999999988888999999999776 888889888889999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++..+..++..+..+
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 164 ATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 987776665544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-19 Score=182.37 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=126.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..+++++.|+++||+ ||||.+..+..++.++.+++..++
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~---------------------- 89 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAE---------------------- 89 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhC----------------------
Confidence 478899999999999999999999999999995 999999999999999999988764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+...++++|+++|++.+...+...+++.|.+|+++ |+++.++.+...++|..++|.+++++.+..+||+.|
T Consensus 90 ---~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~ 160 (392)
T PRK10473 90 ---TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF 160 (392)
T ss_pred ---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHH
Confidence 45678899999999999999999999999999877 999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPI 173 (517)
Q Consensus 161 ~i~~~~~~~~l~~ 173 (517)
++..+..++..+.
T Consensus 161 ~~~~~~~~i~~~~ 173 (392)
T PRK10473 161 YTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHH
Confidence 9877665554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=190.92 Aligned_cols=136 Identities=20% Similarity=0.269 Sum_probs=125.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.+++|+++||+ |||+++.++..+.+++.++++++.
T Consensus 50 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 106 (496)
T PRK03893 50 FGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAP---------------------- 106 (496)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 478999999999999999999999999999995 999999999999999999998874
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|++.+...+....++.|.+|+++ |++.+++.....++|..++|.+++++.+.++||+.|
T Consensus 107 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f 177 (496)
T PRK03893 107 ---GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF 177 (496)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 56789999999999999999999999999999877 999999999999999999999999999989999999
Q ss_pred HHHHHHHH
Q 010145 161 GISTATIL 168 (517)
Q Consensus 161 ~i~~~~~~ 168 (517)
++..+..+
T Consensus 178 ~~~~~~~~ 185 (496)
T PRK03893 178 FIGILPII 185 (496)
T ss_pred HHHHHHHH
Confidence 98654433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=185.02 Aligned_cols=146 Identities=21% Similarity=0.200 Sum_probs=114.0
Q ss_pred CCchhhHHHHHH--HHHHH---HHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcc
Q 010145 3 FSPSSSANIVTN--FMGTA---FLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 3 ~s~~~~~~i~s~--f~~~~---~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
.++++.+.+.+. |..+. .+++++.|+++||+ ||||++..+.++..+++++++++++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--------------- 90 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--------------- 90 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh---------------
Confidence 345555555443 43333 35789999999995 9999999999999999999998754221
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc------
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE------ 151 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~------ 151 (517)
........++++|+++|++.+...+....++.|++|+++ |++..++...+.++|..+++.+++.+.
T Consensus 91 --~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 91 --IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred --hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 000123468899999999999999999999999999887 999999999999999999998876653
Q ss_pred --cccCchhhHHHHHHHHHHHHH
Q 010145 152 --DNKGWQWGFGISTATILLSIP 172 (517)
Q Consensus 152 --~~~gw~~~f~i~~~~~~~~l~ 172 (517)
+.++||++|.+..+..+++..
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHH
Confidence 357999999987766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=181.11 Aligned_cols=148 Identities=10% Similarity=-0.005 Sum_probs=120.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.+|.+++.+.+.++..++.++.|+++||+ |.|+++.++.++..+.+++.+++....
T Consensus 65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~~------------------- 124 (462)
T PRK15034 65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQNP------------------- 124 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHccc-------------------
Confidence 589999999999999999999999999999995 999999999999999999998862100
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------- 151 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~--------- 151 (517)
..+++.+++.|++.|++ |...+.....+++++|+++ |++++++.....|+|..+++.+.+.+.
T Consensus 125 -~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G 196 (462)
T PRK15034 125 -NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLG 196 (462)
T ss_pred -CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11688999999999998 7788999999999999887 999999998888888877766664432
Q ss_pred ---------cccCchhhHHHHHHHHHHHHHHHHh
Q 010145 152 ---------DNKGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 152 ---------~~~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
+..+||.++++..+..++..+..++
T Consensus 197 ~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 197 VNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334777777776666655555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=207.90 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHH--HHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVI--SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~--~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
..+++.++|.++..++.+++|+++||+ |||+++.. ...+...+..+.++.. + +
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--~----------------------s 107 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--N----------------------S 107 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--h----------------------h
Confidence 467888899999999999999999995 99998644 2222222222222221 1 6
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHH
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 164 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~ 164 (517)
++.++++|+++|++.++..|+..+++.|++|+++ |++++++..++.++|.++||.++|++....+|++.|.+..
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7789999999999999999999999999999887 9999999999999999999999999999899999995554
Q ss_pred HHHHHHHHHH
Q 010145 165 ATILLSIPIF 174 (517)
Q Consensus 165 ~~~~~~l~~~ 174 (517)
+..+++++..
T Consensus 182 ~~~~~~~~~~ 191 (1140)
T PRK06814 182 GIAVLGWLAS 191 (1140)
T ss_pred HHHHHHHHHH
Confidence 5444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=178.85 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=104.1
Q ss_pred CCCCchhhHHHHHHHHH-HHHHhhhhhHHhhcccCcchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~-~~~l~~l~~G~laDr~~Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
+|.|.++.|++++.+.+ +..++++++|+ +||+ ||||.+ ..+.++..++.++.+++.
T Consensus 46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~-------------------- 103 (393)
T PRK15011 46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAWNR-------------------- 103 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHHhh--------------------
Confidence 57899999999877655 66666777777 9995 999875 455666667777777764
Q ss_pred CCCCchhHHHHHH-HHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 79 EDEGGKAVMLFAG-LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~-r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
+++.+++. +++.|++ +...|....+..|+.++++ | ..+...++...+.++|.++||.+++++.+.+|||
T Consensus 104 -----~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 104 -----NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred -----HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 34455544 4555554 4678888888888776544 0 1234457888999999999999999999889999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 010145 158 WGFGISTATILLSIPIFLL 176 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~ 176 (517)
..|++.++..++..+..+.
T Consensus 174 ~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999887766555444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=204.67 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
...+++.++|.++..++++++|+++||+ |||++++++.++.+++.++..++.... ++
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~ 103 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAYYLG----------------------WF 103 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHc----------------------cH
Confidence 3468999999999999999999999995 999999999988777776665543212 57
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN 153 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~ 153 (517)
+.++++|+++|++.+...|+..+++.|++|+++ |++++++...+.++|.++|+.+++++...
T Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 104 WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999887 99999999999999999999999999764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-18 Score=173.48 Aligned_cols=336 Identities=12% Similarity=0.033 Sum_probs=207.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHH----HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIY----VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l----~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|.|..+.+++.+.+.+...+++++.|.++||+ ||++.. ..+..++.+ +++..++
T Consensus 34 ~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~------------------ 92 (382)
T TIGR00902 34 IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA--AFSAGAH------------------ 92 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH--HHHHhhh------------------
Confidence 478999999999999999999999999999995 985433 233222222 1222332
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
+++.+++.|+++|.+.+...|...++..|. +++ |++.++......++|.+++|.+++++.+.+||
T Consensus 93 -------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~ 157 (382)
T TIGR00902 93 -------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDE 157 (382)
T ss_pred -------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 567899999999999999999988887653 223 88899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcc
Q 010145 157 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 236 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (517)
|..|++.....++.++. +...+.. ++++++. +
T Consensus 158 ~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-----------------------------------~--------- 189 (382)
T TIGR00902 158 QNILAILTAGLAFMLIG-FLIKPTI---PPKDAIP-----------------------------------E--------- 189 (382)
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCCC---CCCcccc-----------------------------------c---------
Confidence 99998765443322222 2222110 0100000 0
Q ss_pred cCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCe
Q 010145 237 KEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 316 (517)
Q Consensus 237 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (517)
+ .. .+..++.+ ...+|+++... +...+......++.+..... ++. .
T Consensus 190 --~-~~---~~~~~~~~------------------~l~~~~~~~~l---~~~~l~~~~~~~~~~~~~~~---l~~-~--- 235 (382)
T TIGR00902 190 --D-ES---QGDSAFIA------------------LLKNPMNLRFL---AAVCLIQGAHAAYYGFSAIY---WQA-A--- 235 (382)
T ss_pred --c-cc---ccchhHHH------------------HHcChHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHH-C---
Confidence 0 00 00000100 01112222221 11222223333333322221 111 1
Q ss_pred eeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 317 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 317 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
+.+......... ...+...+...+..++.+| .+.++.+..+.++.++.+..++..
T Consensus 236 g~s~~~~g~l~~-~~~~~~i~~~~~~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~----------------- 290 (382)
T TIGR00902 236 GISASATGLLWG-IGVLAEIIIFAFSNKLFQN-------CSARDLLLISAIACVGRWAIIGAI----------------- 290 (382)
T ss_pred CCCHhHHHHHHH-HHHHHHHHHHHHhHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-----------------
Confidence 112211211111 1111112222233333343 466666788888888888776654
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWL 475 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 475 (517)
.+.+.++...++.++..+...+....++.+. |++.+++++++++ ....+|..+++.+.+.+.+..
T Consensus 291 ----~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~--------- 356 (382)
T TIGR00902 291 ----EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL--------- 356 (382)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 2556677778999999999999999999988 9999999999986 567899999999999887321
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHH
Q 010145 476 FGSNLNHYHLERFYWLMCILGGLNFLH 502 (517)
Q Consensus 476 ~~~~~~~~~~~~~f~~~~~l~lv~~~~ 502 (517)
+ ...|+..+++++++.++
T Consensus 357 --------g-~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 --------G-AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred --------c-HHHHHHHHHHHHHHHHH
Confidence 2 24577778877766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=180.99 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=105.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|+.+.+++.+.|.++..+++++.|+++||+ ||||++..++.+++++++++..+...+
T Consensus 56 ~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~a~------------------- 115 (438)
T PRK10133 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM------------------- 115 (438)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcC-------------------
Confidence 578999999999999999999999999999995 999999999999999998864321112
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 151 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~ 151 (517)
+++.++++|+++|+|.|...++..+++.|+.|+++ |....+.......+|..+||.+++.+.
T Consensus 116 ---~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 ---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999765544 666688888999999999998887653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-20 Score=189.72 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=132.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|++++..|.+.+.|.+...+..|+.|+++||| -||+++.+|..+|.++.++++++.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs~---------------------- 119 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFSN---------------------- 119 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHHH----------------------
Confidence 588999999999999999999999999999996 999999999999999999999985
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+++++.+.|.+.|+|.+...|..+++++|.+|+.+ |+++++++|++++.|..+|...++++++..+ |||.
T Consensus 120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a 190 (493)
T KOG1330|consen 120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA 190 (493)
T ss_pred ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence 68899999999999999999999999999999888 9999999999999999999999999987655 9999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010145 160 FGISTATILLSIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~ 176 (517)
|+..+++.++..++.++
T Consensus 191 f~~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 191 FRGSAVLGVIVGLLVFL 207 (493)
T ss_pred EEeehHHHHHHHHHHHh
Confidence 99888877665544333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=173.68 Aligned_cols=143 Identities=11% Similarity=0.118 Sum_probs=131.3
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
++|.+|.|.+.++|.+++.++-.+.|.++||. +.|+.+-.++++.++..++.++++
T Consensus 60 ~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs~----------------------- 115 (448)
T COG2271 60 GLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFSP----------------------- 115 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhhh-----------------------
Confidence 58999999999999999999999999999995 999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH--HhhccccCchhh
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VWIEDNKGWQWG 159 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~--g~l~~~~gw~~~ 159 (517)
+.+.+.+..++.|.-.|+-.|.+...++.+++++| ||+..+++..+-|+|..+.|.+. +++..+.+||..
T Consensus 116 --s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~ 187 (448)
T COG2271 116 --SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAA 187 (448)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHH
Confidence 56689999999999999999999999999999988 99999999999999999999999 999988899999
Q ss_pred HHHHHHHHHH-HHHHHHh
Q 010145 160 FGISTATILL-SIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~-~l~~~~~ 176 (517)
|+++++..++ +++.++.
T Consensus 188 f~~pgiiaiival~~~~~ 205 (448)
T COG2271 188 FYFPGIIAIIVALILLFL 205 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 9999887654 4444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-18 Score=172.15 Aligned_cols=135 Identities=20% Similarity=0.230 Sum_probs=116.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++++++.+.+.++..++.++.|+++||+ ||||++.++.++.+++.+++ .++
T Consensus 30 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~---------------------- 85 (355)
T TIGR00896 30 LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP---------------------- 85 (355)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc----------------------
Confidence 478999999999999999999999999999995 99999999999988887776 432
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc--Cchh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GWQW 158 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~--gw~~ 158 (517)
+.+.+++.|++.|+|.+...+..+.++.|.+| ++ |++++++.+...++|..+++.+++.+.+.. +||+
T Consensus 86 ---~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~ 155 (355)
T TIGR00896 86 ---GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQ 155 (355)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46678899999999999999999999999886 45 999999999999999999999998887654 3999
Q ss_pred hHHHHHHHHHH
Q 010145 159 GFGISTATILL 169 (517)
Q Consensus 159 ~f~i~~~~~~~ 169 (517)
.|.+.....++
T Consensus 156 ~f~~~~~~~~~ 166 (355)
T TIGR00896 156 ALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHH
Confidence 98866554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=171.06 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=104.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcch----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY----RIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk----~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|.|..++|++++++.++..++++++|.++||+ ||| +.+.++..+..+ .....++
T Consensus 34 ~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~--~~~~~~~------------------ 92 (382)
T PRK11128 34 QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV--AFWFGAH------------------ 92 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH--HHHHhcc------------------
Confidence 478999999999999999999999999999995 994 333322222111 1111111
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
+++.+++.|++.|++.+...|...+++.|+. ++ |++.++......++|..+||.+++++.+.+||
T Consensus 93 -------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~ 157 (382)
T PRK11128 93 -------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE 157 (382)
T ss_pred -------cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 5778889999999999999999888888762 22 77888888889999999999999999998999
Q ss_pred hhhHHHHHHHHHHH
Q 010145 157 QWGFGISTATILLS 170 (517)
Q Consensus 157 ~~~f~i~~~~~~~~ 170 (517)
|..|++.++..++.
T Consensus 158 ~~~f~~~~~~~~~~ 171 (382)
T PRK11128 158 QAILWILTAGVASM 171 (382)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999776544433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=168.12 Aligned_cols=359 Identities=13% Similarity=0.065 Sum_probs=240.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|++|.+++++.=.+..++..++-|.+.||+ |.|++...++++..+-.+..+++...+
T Consensus 44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~~~------------------- 103 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVTYP------------------- 103 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHccCC-------------------
Confidence 589999999999999999999999999999995 999999999999999999999986544
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC---ch
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQ 157 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g---w~ 157 (517)
+++.+++.+++.|++.|. .+...++++++||+++ +|.+++++. ..|+|..+..++++++....+ |+
T Consensus 104 ---~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~ 172 (417)
T COG2223 104 ---STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWR 172 (417)
T ss_pred ---chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHH
Confidence 567999999999999665 6788899999999998 999999999 999999999999999998888 99
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
..-.+..+..++..+.+++..+..++.+++.++...
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-------------------------------------------- 208 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-------------------------------------------- 208 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--------------------------------------------
Confidence 999988888887776666654433332211111000
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
..++ .+..+|.++....+-..+...++.+.- ..+.+.+.+.+-..
T Consensus 209 ------------~~~~-----------------~v~~~~~~W~lsllY~~tFG~Fvgfs~------~l~~~~~~~fg~~~ 253 (417)
T COG2223 209 ------------AQLK-----------------AVFSNKDTWLLSLLYFATFGGFVGFSA------YLPMYLVTQFGLSP 253 (417)
T ss_pred ------------hHHH-----------------HHhcCcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCCCh
Confidence 0000 011112222221221222222222221 12222222222112
Q ss_pred eCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 010145 318 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 397 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (517)
...+.+....++...+.-|+..++.||+..+ +...+.+..++++......... +.
T Consensus 254 ~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~~~~~l~~~~~--------------~~ 308 (417)
T COG2223 254 VTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMALAAALLSLFLT--------------GF 308 (417)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHHHHHHHHHcccc--------------cc
Confidence 2223344444455555555556666555543 3466667777777766665420 00
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccC
Q 010145 398 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 477 (517)
Q Consensus 398 ~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (517)
..+.+....+..++...+..+.-+-....++..+.|+ +.|.+.|+......+|.+.-+...+...+-+
T Consensus 309 ~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t----------- 376 (417)
T COG2223 309 GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT----------- 376 (417)
T ss_pred ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc-----------
Confidence 1123444444445555555555555555666666665 5789999999999999988888877766433
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 478 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 478 ~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
+.++..|+++..+.+++.+..+...+|.+
T Consensus 377 -----g~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 377 -----GSYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34577899999999999988888776663
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-17 Score=173.68 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=115.3
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-----cchHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-----TTYRI-YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-----Grk~~-l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
|.|.++.+.+ +.+... +++.++.|.++|| + ||||. ++++.+..+++..++++...
T Consensus 43 g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~---------------- 103 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP---------------- 103 (491)
T ss_pred CCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCC----------------
Confidence 4566677775 334444 3688999999999 7 99986 66777777777777777531
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NK 154 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-~~ 154 (517)
..+++.+.+.+++.+++.+...+...+++.|++|+++ |++..++...+.++|.++++.+++++.+ ..
T Consensus 104 ------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 104 ------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1157788999999999999999999999999999877 9999999999999999999999999988 57
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 010145 155 GWQWGFGISTATILLSIPIFL 175 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~~~ 175 (517)
|||..|++.++..++..+..+
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776665544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=176.73 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=112.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+.+++.+.+.++..++++++|+++||+ |||+.+.++.++..++.+++++++.
T Consensus 32 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~~--------------------- 89 (366)
T TIGR00886 32 LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAVQ--------------------- 89 (366)
T ss_pred hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 588999999999999999999999999999995 9999999999999999999988741
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-------- 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-------- 152 (517)
+++.++++|+++|++.+.. +...++++|++|+++ |++..++.....++|..+++.+++.+..
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 90 ---SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred ---hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567889999999997654 567889999999877 9999999998888888888888766643
Q ss_pred --ccCchhhHHH
Q 010145 153 --NKGWQWGFGI 162 (517)
Q Consensus 153 --~~gw~~~f~i 162 (517)
..+||+.|++
T Consensus 160 ~~~~~w~~~~~~ 171 (366)
T TIGR00886 160 PAHLAWGWAFVI 171 (366)
T ss_pred cccccccchhHH
Confidence 2489999943
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=170.55 Aligned_cols=367 Identities=12% Similarity=0.091 Sum_probs=205.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcc-hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT-YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Gr-k~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..|.|++.+.+.++..+++++.|+++||+ || |+++.++.++.+++..+..+.+
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~~~~--------------------- 90 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAAQVT--------------------- 90 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 478999999999999999999999999999995 65 7788888888888887777653
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCccc--chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT--QLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~--~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
+++.+++.|++.|++.+...|...+...+...++. ..+.-.|.+.++ ++|.++||.+++.+.....|+
T Consensus 91 ----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~ 160 (418)
T TIGR00889 91 ----TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI 160 (418)
T ss_pred ----CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH
Confidence 45678889999999888777776665432221110 000001445544 478999999999885433444
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
+|++.++..++..+..+ ..++.++.+++++ .+
T Consensus 161 -~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~--~~-------------------------------------------- 192 (418)
T TIGR00889 161 -QLYITAGSSALLGVFAL-TLPDIPVAKSTAK--MS-------------------------------------------- 192 (418)
T ss_pred -HHHHHHHHHHHHHHHHh-cCCCCCCCccccc--cC--------------------------------------------
Confidence 45555554444333222 2222111000000 00
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCC--C-
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL--G- 314 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 314 (517)
..+....++.+.. ++ +++...+. ...+........+............+. .
T Consensus 193 -----~~~~~~~~~~~~~-----------------k~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (418)
T TIGR00889 193 -----IKVMLGLDAFILF-----------------KN-KRMAIFFF---FSMLLGAPLQITNIFGNGFLHEFGRNPEFAD 246 (418)
T ss_pred -----HHHHhhhhHHHHh-----------------cC-CCeeeHHH---HHHHHHhHHHHHHHhHHHHHHHhcccccccc
Confidence 0000000000000 00 11111111 111111111111111111101111000 0
Q ss_pred Ceee-CCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010145 315 SLKV-PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV 393 (517)
Q Consensus 315 ~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 393 (517)
++.. ..+....+..+..++...+..++.+++ +.++.+..+.++.++++.......
T Consensus 247 ~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~v~~~l~~~~~------------- 302 (418)
T TIGR00889 247 SFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----------GIKKVMLLSLVAWALRFGFFAYGD------------- 302 (418)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 0000 001122222333333333333444333 333446777777777665554421
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCC
Q 010145 394 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHT 472 (517)
Q Consensus 394 ~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~l~~~~~~~~~~~~~~~~~~ 472 (517)
......+.+++..++.+++++...+....++.+..|++.||+++|+.+ ....+|..+++.+.+.+.+..+.
T Consensus 303 ----~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---- 374 (418)
T TIGR00889 303 ----PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---- 374 (418)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----
Confidence 011123445566788999999888888899999999999999999997 67889999999999988743211
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 473 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 473 ~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
.+..+|+..|++.+++.+++.++++++.++.+.
T Consensus 375 -------~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 375 -------YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred -------ccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 111357888988888888888888877765543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-17 Score=171.66 Aligned_cols=351 Identities=16% Similarity=0.136 Sum_probs=225.4
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
-|+...+.+..+-.+...+..+++|.++||+ .|||+++.+-.+..+..+++++..... .
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~--------------------~ 100 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG--------------------L 100 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC--------------------c
Confidence 3566788889999999999999999999995 999999999999988777776643222 1
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHH
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 162 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i 162 (517)
.+.+.+++.-++.|++.+...|+-.+++.|..|+++ ..++.++.....|+.-++||.++|.+...+|-.+.|.+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 267889999999999999999999999999999887 89999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCC
Q 010145 163 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 242 (517)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (517)
+.+..++.+..+....+... +++.+.....+.+...
T Consensus 175 nalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G----------------------------------------- 210 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPPP---PSSLPRERFFSALREG----------------------------------------- 210 (524)
T ss_pred HHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHH-----------------------------------------
Confidence 98877665544433222111 1000000000000000
Q ss_pred CCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHH-HHhccCCCCeeeCCC
Q 010145 243 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKVPPA 321 (517)
Q Consensus 243 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 321 (517)
.++. ...+.+...+.. ..++......+...++... ..++.. ...-+
T Consensus 211 ------~ryv--------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~~l~~~----a~~yG 257 (524)
T PF05977_consen 211 ------LRYV--------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFARDVLGGG----ASGYG 257 (524)
T ss_pred ------HHHH--------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHHHhCCc----HHHHH
Confidence 0000 001111111111 1111111111111111111 112211 00111
Q ss_pred CcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q 010145 322 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 401 (517)
Q Consensus 322 ~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (517)
.+.....+..++.. .+..++.+| .+..+.+..+.++.+++++..++. .
T Consensus 258 ll~a~~gvGai~Ga----l~~~~l~~~-------~~~~~lv~~~~~~~a~~~~~lal~---------------------~ 305 (524)
T PF05977_consen 258 LLLAAFGVGAILGA----LLLPRLRRR-------LSSRRLVLLASLLFALALLLLALS---------------------P 305 (524)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhcc-------cCcchhhHHHHHHHHHHHHHHhcc---------------------h
Confidence 22223333333332 223222232 233344666777777777666654 2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+...+.+++.|++.........+...+.+|+++||++++++.+....+..+|..+.+.+.+.
T Consensus 306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---------------- 369 (524)
T PF05977_consen 306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---------------- 369 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 4556677778899999999999999999999999999999999999999999999999988642
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFW 506 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~ 506 (517)
.+.+..+.+.++..++..++.+..
T Consensus 370 -~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 370 -FGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHHHh
Confidence 233556666665555555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=175.86 Aligned_cols=363 Identities=11% Similarity=0.029 Sum_probs=201.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+.+.+.+.+.++..+++++.|+++||+ ||||++.++..+..++..........+.
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 101 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFGPFFIYVFAPL------------------ 101 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 478999999999999999999999999999995 9999999877776655432221100000
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
-..-...+.++.++..+...+...+.+.++.++.. ++++..++......++|..++|.+++++.+ .+|+++|
T Consensus 102 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f 173 (420)
T PRK09528 102 ---LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF 173 (420)
T ss_pred ---HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence 00001222223333333333333333333332111 126778888888999999999999999976 5999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
++.++..++.++..+...++.+++ ++.+ + +.+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~----------------------~~~---------~- 206 (420)
T PRK09528 174 WLGSGSALILLVLLFFAKPDAPST-AKVA--------------N----------------------ALG---------A- 206 (420)
T ss_pred HHHHHHHHHHHHHHhcccccccch-hhhc--------------c----------------------chh---------c-
Confidence 988776665555444332221110 0000 0 000 0
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHh-hhchhHHHHHHHHhccCCCCeeeC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL-AQLSTFSVQQAATMNTKLGSLKVP 319 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 319 (517)
.. +.....+..+ . ..++.++............+... .+.+.+.... ..+.... ...
T Consensus 207 ~~-~~~~~~~~~~---~---------------l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~ 263 (420)
T PRK09528 207 NA-SAVSLKDALA---L---------------LKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASF--FATPEQG--TRV 263 (420)
T ss_pred cc-ccccHHHHHH---H---------------ccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHH--HhccCcc--hHH
Confidence 00 0000000000 0 00111111111111111111222 2222222211 1111100 000
Q ss_pred CCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 010145 320 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 399 (517)
Q Consensus 320 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (517)
.+....+..+...+..++..++.+|+.+| +.+..+.++.+++.+..++.
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~-------------------- 312 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFA-------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhc--------------------
Confidence 11223333334444455555555444433 23666677777766665543
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCC
Q 010145 400 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 478 (517)
Q Consensus 400 ~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (517)
.+.++++...++.+++.....+...+++.+..|++.+++..++ +++...+|..+++.+.+.+.+.
T Consensus 313 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~------------- 378 (420)
T PRK09528 313 -TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS------------- 378 (420)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 2445666777888888888777777899999999999987665 6677889999999998887631
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 479 NLNHYHLERFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 479 ~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
.+|+..|++.+++.++..++.++..++
T Consensus 379 ----~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 379 ----IGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred ----hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 246778888888887776666655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=171.41 Aligned_cols=334 Identities=13% Similarity=0.124 Sum_probs=201.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc---CcchH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYR-IYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~---~Grk~-~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|+|..++|++.+...+...+..|+.|+++||. +|||| .++++..+.+++.+++...++.+
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~--------------- 94 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS--------------- 94 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC---------------
Confidence 478999999999999999999999999999983 48855 57778888888888887653211
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE----- 151 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~----- 151 (517)
+..+...+++.+++.+++.+...+...++..|..++++ +|++..++.....++|..+++.+.+.+.
T Consensus 95 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~ 165 (437)
T TIGR00792 95 ----ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG 165 (437)
T ss_pred ----cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11245677888899999999988888899999886543 2899999999988998887766654443
Q ss_pred --cccCchhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCC
Q 010145 152 --DNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 229 (517)
Q Consensus 152 --~~~gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (517)
+..+||+.+.+.++..++..++.++..++.+++.+.++
T Consensus 166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~---------------------------------------- 205 (437)
T TIGR00792 166 GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI---------------------------------------- 205 (437)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc----------------------------------------
Confidence 24689999988777666554444333222110000000
Q ss_pred cCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 010145 230 DEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM 309 (517)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (517)
+ .+. +..+..+ .....|.+...+.. ..+.+........... .+.
T Consensus 206 ---------~-~~~------~~~~~~~--------------~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~ 249 (437)
T TIGR00792 206 ---------E-KKL------SLKQIFK--------------ALFKNDQLLILCLA---YLFYNLAFNIKNGVQV---YYF 249 (437)
T ss_pred ---------c-cCC------CHHHHHH--------------HHhCCHHHHHHHHH---HHHHHHHHHHHcchhh---eeE
Confidence 0 000 0000000 00111222222111 1111111111111111 111
Q ss_pred ccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010145 310 NTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVN 389 (517)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~ 389 (517)
+..++. ....+.+..+..+..++..++..++.+++.+ ++.+..+.++.+++++......
T Consensus 250 ~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~-----------~~~~~~~~~~~~~~~~~~~~~~--------- 308 (437)
T TIGR00792 250 TYVLGD-PELFSYMGSIAIVAGLIGVLLFPRLVKKFGR-----------KILFAGGILLMVLGYLIFFFAG--------- 308 (437)
T ss_pred eeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHcc---------
Confidence 111110 0001112223334444444554444433332 2336667777776666554421
Q ss_pred cCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 390 SGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIV 462 (517)
Q Consensus 390 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~l~~~~~~~~ 462 (517)
.+.+.+++..++.+++.+...+..+++..|.+| ++.+|.+.|+.++...+|..+++.+.+.+
T Consensus 309 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 309 -----------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133445556677888888888888888888765 55689999999999999999999999988
Q ss_pred hhcc
Q 010145 463 NNIT 466 (517)
Q Consensus 463 ~~~~ 466 (517)
.+..
T Consensus 378 l~~~ 381 (437)
T TIGR00792 378 LGII 381 (437)
T ss_pred HHHc
Confidence 7654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=166.80 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=123.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..++.+++|+++||+ ||||++.++..++++|.++...+...+
T Consensus 33 ~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~~~------------------- 92 (410)
T TIGR00885 33 FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAEIM------------------- 92 (410)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence 578999999999999999999999999999995 999999999999999998876553222
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-------- 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-------- 152 (517)
+++.++++|++.|+|.|...+...+++.+..|+++ |++..++.+...++|..+||.+++.+..
T Consensus 93 ---~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 93 ---NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred ---cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 67889999999999999999999999999988776 8888999999999999999999887732
Q ss_pred ------------------ccCchhhHHHHHHHHHHHHH
Q 010145 153 ------------------NKGWQWGFGISTATILLSIP 172 (517)
Q Consensus 153 ------------------~~gw~~~f~i~~~~~~~~l~ 172 (517)
..+||++|.+.++..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23699999876665554333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=167.11 Aligned_cols=147 Identities=8% Similarity=0.007 Sum_probs=109.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++.+.+.++..+++++.|+++||+ ||||.++.+....+++..........+..
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 94 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVFGPLL----------------- 94 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------------
Confidence 478999999999999999999999999999995 99999998877776654432211000000
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
.......++++|++.|++.+...|....+..|..+ + ++..++......++|.++||.+++.+.+ .+||.+|
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f 165 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVF 165 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHH
Confidence 00012345677889999999989998888766422 1 4456778888889999999999998865 6999999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIF 174 (517)
Q Consensus 161 ~i~~~~~~~~l~~~ 174 (517)
++.....++..+..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 166 WLGSGFALILMLLL 179 (396)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877666554433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=163.41 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=116.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc----CcchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF----FTTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~----~Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
+|+|.+|.+++.+. .+...+ .++.|.++||+ +||||.+ +.+.++.++..+++++....
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~--------------- 80 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS--------------- 80 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc---------------
Confidence 47899999999655 444444 88999999994 3999974 66777777776677665321
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g 155 (517)
.+.+.+....++.+++.+...++..+++.|++|+++ |+++.++...+.++|.++++.+++++....+
T Consensus 81 -------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 81 -------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 155667777788899999999999999999998877 9999999999999999999999999987777
Q ss_pred --------chhhHHHHHHHHHHHHHHHH
Q 010145 156 --------WQWGFGISTATILLSIPIFL 175 (517)
Q Consensus 156 --------w~~~f~i~~~~~~~~l~~~~ 175 (517)
||..|++.++..++..+..+
T Consensus 148 ~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 148 ANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999988887666554433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=170.60 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=122.1
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+........+.|.+|..+|+++.|.++|| +|||+++++++.+..++.++.+++.
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~------------------------ 169 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP------------------------ 169 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC------------------------
Confidence 456677889999999999999999999999 5999999999999999999999985
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHH
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 162 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i 162 (517)
+++.+++.|+++|++.+....+...+++|.+++++ |+.+.++ ......|..+++.+++++.. +||+.+++
T Consensus 170 -~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~ 239 (521)
T KOG0255|consen 170 -NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI 239 (521)
T ss_pred -cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 67799999999999999999999999999999998 9999999 88888888889999999876 99999998
Q ss_pred HHHHHHHHHHH
Q 010145 163 STATILLSIPI 173 (517)
Q Consensus 163 ~~~~~~~~l~~ 173 (517)
.....++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 76665544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-17 Score=158.59 Aligned_cols=145 Identities=18% Similarity=0.141 Sum_probs=132.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
+-++++.|++..++.+...+..++.|.++|| +|+|--+++|+.++...+++.++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~----------------------- 157 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN----------------------- 157 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-----------------------
Confidence 4567899999999999999999999999999 5999999999999999999999975
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
++++++++|.+||+|.+....+..++++|.||++. +|++++++.-..+.+|.++||.+||.+.+..|.+.+|+
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 67899999999999999999999999999999876 39999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010145 162 ISTATILLSIPIFLLG 177 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~ 177 (517)
+-+.++++...+-++.
T Consensus 231 VL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 9887777665554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-15 Score=157.10 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=116.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-----cchH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-----TTYR-IYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-----Grk~-~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
|+|.+|.|++...... .+..++.|+++|| + |||| .+.++..+.+++..++++...
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~---------------- 90 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP---------------- 90 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCc----------------
Confidence 7899999999666554 5888999999999 6 8876 688888888888887777531
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-K 154 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~ 154 (517)
..+.+.+++..++.++..+...|+..+++.|++|+++ |+++.++...+.++|..+++.+++++.+. .
T Consensus 91 ------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 91 ------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 1156677777778889999999999999999999887 99999999999999999999999998875 5
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 010145 155 GWQWGFGISTATILLSIPI 173 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~ 173 (517)
|||..|++.++..++..+.
T Consensus 159 gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999877766554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-22 Score=213.94 Aligned_cols=150 Identities=23% Similarity=0.309 Sum_probs=123.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
.+.+++.+.+.++..++++++|+++||+ |||+++.++..+..+|+++.++++... ++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~ 102 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSYN----------------------NF 102 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccccc----------------------cc
Confidence 4578999999999999999999999995 999999999999999999999986211 45
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc---ccCchhhHHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---NKGWQWGFGI 162 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~---~~gw~~~f~i 162 (517)
+.+.++|+++|+|.|+..+..+.|+.|..|+++ |++..++......+|..++..++..+.. ..+||..+.+
T Consensus 103 ~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~ 176 (451)
T PF00083_consen 103 WMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF 176 (451)
T ss_pred ccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccc
Confidence 679999999999999999999999999999888 9999999999999999988877654433 3459999998
Q ss_pred HHHHHHHHHHH--HHhcCCccccc
Q 010145 163 STATILLSIPI--FLLGSPFYRNK 184 (517)
Q Consensus 163 ~~~~~~~~l~~--~~~~~~~~~~~ 184 (517)
+.+..++.++. +...+|++...
T Consensus 177 ~~~~~l~~~~~~~~~pESP~wL~~ 200 (451)
T PF00083_consen 177 GAIPSLLVLLLRFFLPESPRWLLS 200 (451)
T ss_pred cccccccccccccccccccceecc
Confidence 77665443333 33334554443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-15 Score=156.12 Aligned_cols=414 Identities=11% Similarity=0.045 Sum_probs=242.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcc---cCcchHHHHHH-HHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADA---FFTTYRIYVIS-AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr---~~Grk~~l~~~-~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|.+..+++++..+-.+...+.+|+.|+++|| .+||||.++++ .....++.++.+.+.+...+.... .
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~--------~ 105 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN--------L 105 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc--------c
Confidence 57889999999999999999999999999994 25999999885 555556667777764322111000 0
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--ccc-
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--EDN- 153 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l--~~~- 153 (517)
....+......++++..+..++....++...++++|.+|++++ +++.++++...+.++|.++|+.++++. .+.
T Consensus 106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 0001111224556666667778888899999999999998761 136899999999999999999999875 211
Q ss_pred ------------cCchhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccC
Q 010145 154 ------------KGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSS 221 (517)
Q Consensus 154 ------------~gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (517)
.+.+..|.+.++..++..++..+..++.+..++++.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~----------------------------- 232 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS----------------------------- 232 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-----------------------------
Confidence 156899999888777766665554444322111100000
Q ss_pred CCCCCCCCcCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhH
Q 010145 222 PTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTF 301 (517)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (517)
|.++. ++ ...+ ..-.+..+..+ .-.|.+.+++.+.++.-+-|..+..+.+.
T Consensus 233 -----~~~~~------~~-~~~~-~~~~~i~~~~~----------------~mP~~m~~l~~vqffsW~a~f~~~~y~T~ 283 (477)
T TIGR01301 233 -----EAAPP------SK-HGEE-AFFGELFGAFK----------------YLPRPVWILLLVTCLNWIAWFPFILFDTD 283 (477)
T ss_pred -----hcccc------cc-cchh-hhHHHHHHHHH----------------HCCHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 00000 00 0000 00001111111 01133444555566666666666666665
Q ss_pred HHHHHHHhccCCCCeeeCCCCc------CCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHH
Q 010145 302 SVQQAATMNTKLGSLKVPPASL------PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAV 375 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~ 375 (517)
++-+..+-..+ . ....+ .....+...+...+++.++.++.||..+ .+..-.++.++.++++++
T Consensus 284 ~vg~~v~~~~~----~-~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~------~k~~~~~s~~~~~~~l~~ 352 (477)
T TIGR01301 284 WMGREVYGGSV----N-QGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA------GKRLWGIVNIILAICLAA 352 (477)
T ss_pred HHHHHHcCCCC----c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHH
Confidence 54432221111 0 01111 1111111122222334445555555321 112236777788888887
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcccc-hHHHHHHHHHHHHHHHHHhhhhHHHhhcccch--hhHHHHHHHHHHHHHHHH
Q 010145 376 AALVEIKRKRVAVNSGLVNSSEPLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPL--SMRSLATSLSWASLAMGY 452 (517)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~--~~rg~~~gi~~~~~~ig~ 452 (517)
..+.....-+.....+ .+..-..++. .+..++.+.+.|+.....+...++++.+..|+ +..|.++|+.|.+-.+.+
T Consensus 353 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQ 431 (477)
T TIGR01301 353 TVLVTYVAKNSRYYDG-DGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQ 431 (477)
T ss_pred HHHHHhhhhccccccc-cccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHH
Confidence 7765320000000000 0000011122 46788888999999999999999999999995 445999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 453 YFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 453 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
.+.....+.+....+ ++-.+.+.+.++..+++.+..++..+|.+
T Consensus 432 ii~sl~~g~~~~~~g---------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 432 IIVSLGSGPWDQLFG---------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHcC---------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 998887777543322 22244778888888888888777776654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=170.34 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=130.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCC--------------
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPP-------------- 66 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~-------------- 66 (517)
++++.++.|++.+.|.++..++.++.|+++||+ ||||.+.++++++++|+++.++.+.+..-.++
T Consensus 63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~ 141 (633)
T TIGR00805 63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSAN 141 (633)
T ss_pred hCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccc
Confidence 578899999999999999999999999999995 99999999999999999999986432110000
Q ss_pred --CcccccCC---------CcccCCC--CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH
Q 010145 67 --TCVLEDGI---------ASCREDE--GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 133 (517)
Q Consensus 67 --~~~~~~~~---------~~~~~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~ 133 (517)
.|. .... ..|.+.+ ...+.+++++|+++|+|.+...+...+++.|++|+++ |+..+++++
T Consensus 142 ~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~ 214 (633)
T TIGR00805 142 SFLCM-ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILE 214 (633)
T ss_pred ccccc-CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHH
Confidence 000 0000 0111111 1246788899999999999999999999999999887 999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccc----------------------CchhhHHHHHHHHHHHHHHHHhcC
Q 010145 134 FCLSCGALIAVTFVVWIEDNK----------------------GWQWGFGISTATILLSIPIFLLGS 178 (517)
Q Consensus 134 ~~~~lG~~ig~~i~g~l~~~~----------------------gw~~~f~i~~~~~~~~l~~~~~~~ 178 (517)
.+..+|.++|+.+++++.+.+ +||..|++.+++.++..+.+++..
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999886432 277778877766655444444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-15 Score=153.49 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=127.8
Q ss_pred CCCCchh-hHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSS-SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~-~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|+|++| .|.+.++|..++.++.+++|+++|| +|.|+++.++++.+++.+++.+++.
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~--------------------- 113 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT--------------------- 113 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 5899999 9999999999999999999999999 5999999999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+...+.+.|++.|++.|... +...++..++|+++ |+++.++...+.++|.++++.+++++. .+|||+-
T Consensus 114 ----Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y 181 (511)
T TIGR00806 114 ----SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISY 181 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhH
Confidence 46689999999999999999 99999999999888 999999999999999999999999954 5799865
Q ss_pred HH---HHHHHHHHHHHHHHhc
Q 010145 160 FG---ISTATILLSIPIFLLG 177 (517)
Q Consensus 160 f~---i~~~~~~~~l~~~~~~ 177 (517)
+. |+.....+++++-++.
T Consensus 182 ~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 182 STLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 55 5556666666655544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=149.20 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=104.1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
..-+|.+-|.|.+..++.+++.|.++||+ |||.+++.|.+..++..++-+.+. +
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-------------------------~ 120 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-------------------------N 120 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-------------------------H
Confidence 34568899999999999999999999996 999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
+..+.++|++.|+.-|- ...+.++++|.+++++ |+..++....+..+|.++||.+||++..
T Consensus 121 F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 121 FAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 54677779999999886 5667899999999987 9999999999999999999999999987
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=152.44 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=111.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
.+...|+.+++.++.+..+++.|.++|. ||||..++.+.++..+|+++++.++ +
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~-------------------------~ 130 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ-------------------------N 130 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC-------------------------c
Confidence 3567899999999999999999999999 5999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHH
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 164 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~ 164 (517)
...++++..+.|+|.|.... ....++|..|.+. |.....+.....-.....+|.++..+...-+|||.|++..
T Consensus 131 ~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFI 203 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHH
Confidence 55799999999999888775 4666899998765 7666666655544444456777766666679999999988
Q ss_pred HHHHHHHHH
Q 010145 165 ATILLSIPI 173 (517)
Q Consensus 165 ~~~~~~l~~ 173 (517)
+...++++.
T Consensus 204 i~~~i~~vl 212 (599)
T PF06609_consen 204 IWSGIALVL 212 (599)
T ss_pred HHHHHHHHH
Confidence 876666544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-14 Score=149.66 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=123.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|....+.+++.++|.++..++.+++|++.||+ .-.+.+....+.+++-.++.....
T Consensus 77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~----------------------- 132 (495)
T KOG2533|consen 77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH----------------------- 132 (495)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 55667899999999999999999999999995 988888887777777666655543
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh------ccccC
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI------EDNKG 155 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l------~~~~g 155 (517)
+++.+++.|++.|+..+...|....+++.+|.++| |+..+++++.+.++|.++|.++...+ ....|
T Consensus 133 --s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 133 --SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred --hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 57789999999999999999999999999999888 99999999999999999999998775 34579
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCC
Q 010145 156 WQWGFGISTATILLSIPIFLLGSP 179 (517)
Q Consensus 156 w~~~f~i~~~~~~~~l~~~~~~~~ 179 (517)
|||.|.|.+++.++.-+..++..|
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEec
Confidence 999999999876655444444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=152.99 Aligned_cols=142 Identities=22% Similarity=0.304 Sum_probs=107.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+++.-.+.+..+-.+|..+++++.||++||+ |||+++...++++.+++++++++...+ +.
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~------------------~~ 140 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTT------------------SP 140 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCC------------------CC
Confidence 35566678888899999999999999999995 999999999999999999877764322 22
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH----HHHHHHHHHHHHHHHHHhhcc-----
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY----YVFCLSCGALIAVTFVVWIED----- 152 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~----~~~~~~lG~~ig~~i~g~l~~----- 152 (517)
.....++.+.|++.|+|.|+-+|.+.++.+|....+. ||...+. +.+++-.|.+++-.+.+-...
T Consensus 141 ~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~ 214 (538)
T KOG0252|consen 141 LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP 214 (538)
T ss_pred cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCC
Confidence 2357789999999999999999999999999877655 6665554 444554555554444443321
Q ss_pred ------ccCchhhHHHHHHHHH
Q 010145 153 ------NKGWQWGFGISTATIL 168 (517)
Q Consensus 153 ------~~gw~~~f~i~~~~~~ 168 (517)
+.=||..|.+..+..+
T Consensus 215 ~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 215 STYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 1348999888766544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-14 Score=141.14 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..|++.+..+|..+.+++.+..|++.+|+ |+|+.++.|+.++++|+++..=+++.
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~~-------------------- 101 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAASS-------------------- 101 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhhh--------------------
Confidence 578999999999999999999999999999995 99999999999999999998655432
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
..+.+++++.++.|.|.|..+.+..+|++...|+++ -.+-+++.+....+|+++||++++++..
T Consensus 102 --~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 --KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred --hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 278899999999999999999999999999999876 5566788888889999999999998876
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-13 Score=143.26 Aligned_cols=127 Identities=9% Similarity=0.069 Sum_probs=86.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc---CcchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~---~Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|++..++|.+.+...+..++..++.|+++||. +||||.+ +++.+...+.++++-..+.-.
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 103 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDW--------------- 103 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCC---------------
Confidence 478999999999999999999999999999993 3778755 556665655554432211000
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHhh
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFC-----LSCGALIAVTFVVWI 150 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~-----~~lG~~ig~~i~g~l 150 (517)
++......+++..++.+++.+...+...++..+..++.+ +|.+..++..++ .++|..++|.+.+..
T Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 104 ---SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 011133445556677888899999888888888877644 266766655443 446666777666544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=143.23 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=106.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc---Ccch-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTY-RIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~---~Grk-~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|+|..++|.+.+...+..++..|+.|+++||. +||| +.++++.+..+++.+++-..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~---------------- 103 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF---------------- 103 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC----------------
Confidence 588999999999999999999999999999993 3885 45556777777776655443211
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---- 152 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~---- 152 (517)
++..+...+++..++.+++.........++.+|..++++ +|.+..++.....++|..+++.+...+..
T Consensus 104 ---~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~ 175 (444)
T PRK09669 104 ---GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALSFIGGLIVSVIALPLVDILGK 175 (444)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112245566677777777777777788899999986544 28889899998889988888765433321
Q ss_pred ---ccCchhhHHHHHHHHHHHHHH
Q 010145 153 ---NKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 153 ---~~gw~~~f~i~~~~~~~~l~~ 173 (517)
..+|+..+.+.++..++..++
T Consensus 176 ~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 176 GDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHH
Confidence 347887777666655544433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=144.19 Aligned_cols=391 Identities=14% Similarity=0.077 Sum_probs=229.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|-+.++++|+.+.......+..|+.+.+.||| |.|++.+.|.++.++|.++.+++++
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF~~~--------------------- 133 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSFATS--------------------- 133 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 356778899999999999999999999999995 9999999999999999999999974
Q ss_pred CCchhHHHHHH-HHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAG-LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~-r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
++.+++. =++.|+|.|+.......+++.+|++ ||+.+.++-..+..+|..+-|.+.-++.+.+|||..
T Consensus 134 ----i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~ 202 (509)
T KOG2504|consen 134 ----LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA 202 (509)
T ss_pred ----HHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence 4445544 4569999999999999999988774 299999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK 239 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (517)
+++-+...+-..+.-...+|......+. ...+... ..+..+........ . ++..+ .+
T Consensus 203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~----~------~~~~~-------~~ 259 (509)
T KOG2504|consen 203 LLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN----SAASVESTPKPVEL----R------ISERD-------SG 259 (509)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc----cccccccccccccc----c------cccCC-------CC
Confidence 9987766654444444444433222221 0000000 00000000000000 0 00000 00
Q ss_pred CCCCCCCchhHHHHHhhhcCCCCCcc-----ccc----chhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhc
Q 010145 240 VPSQKPTEDIKFLNRALRNNPAYPIV-----QCT----VKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMN 310 (517)
Q Consensus 240 ~~~l~~~~~~~~l~~~~~~~~~~~~~-----~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (517)
....+..++....+. ...++ ... .+...++..++..+...+... . +....+....+.+
T Consensus 260 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g---~~~p~~~l~~~~~ 326 (509)
T KOG2504|consen 260 LKKLSLSNLATLKRG------PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----G---FNVPFVYLPSYAK 326 (509)
T ss_pred CCcccccchhhhhhC------CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----H---HHHHHHHHHHHHh
Confidence 000000000000000 00010 000 011112111111111111111 1 1111111111222
Q ss_pred cCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 311 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 390 (517)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 390 (517)
..+-.....+.+..+..+.-++.-++..++.|+-. ++.......+++..+++.++....
T Consensus 327 -~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~----------- 385 (509)
T KOG2504|consen 327 -SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFA----------- 385 (509)
T ss_pred -hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 11100111122223333333333343333332211 123334555666666666444443
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 010145 391 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR 470 (517)
Q Consensus 391 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~ 470 (517)
.+.+.++..-++.|+..+...........+..+.+.-..+.|+..+...++..+++.+.+.+.+.+
T Consensus 386 ----------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---- 451 (509)
T KOG2504|consen 386 ----------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---- 451 (509)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc----
Confidence 355677777788999998888888788999999999999999999999999999999887654322
Q ss_pred CCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 471 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
++|+..|.+.+++.+++.+.+++..
T Consensus 452 ------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 ------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 3467778888888888876666555
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=143.25 Aligned_cols=373 Identities=12% Similarity=0.114 Sum_probs=224.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhc----ccCcchHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLAD----AFFTTYRIYV-ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laD----r~~Grk~~l~-~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
+|+++..++.+.....+..++..|+.|+++| | +||||-++ +|..+.+++..++-... |.
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~~--p~------------- 95 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSPP--PA------------- 95 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhccc--cc-------------
Confidence 4788899999999999999999999999999 7 59777766 57777777777766541 10
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc--
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-- 153 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-- 153 (517)
..+.......+.+..++..++.........++..|..++++ +|.+..++.....++|.++...+.+.+.+.
T Consensus 96 --~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 96 --GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred --hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 00111134456777778899999999999999999998765 399999999999999987666666555422
Q ss_pred -----cCchhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCC
Q 010145 154 -----KGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 228 (517)
Q Consensus 154 -----~gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (517)
.+|++...+.++..++..++..+..|+...+.+++++
T Consensus 169 ~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------------------------- 210 (428)
T PF13347_consen 169 GGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------------------------- 210 (428)
T ss_pred cCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc--------------------------------------
Confidence 1688888877666665555544443330000000000
Q ss_pred CcCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHH-
Q 010145 229 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA- 307 (517)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (517)
.. ++.+ .++ +..+.|..... .....+.+.......+...+...
T Consensus 211 -------------~~------~~~~---------~~~-----~~~~nr~~~~l---~~~~~~~~~~~~~~~~~~~y~~~~ 254 (428)
T PF13347_consen 211 -------------KI------SLRD---------SLR-----SLFRNRPFRIL---LLAFFLQWLAFALMNTFLPYYFTY 254 (428)
T ss_pred -------------cc------cccc---------chh-----hhcccchHHHH---HHHHHHHHhhhhhhhhHHHHHHHH
Confidence 00 0000 000 00011222222 12222222222222222222211
Q ss_pred HhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 308 TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 387 (517)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~ 387 (517)
.+... . ..+.+..+..+..++..++..++.+|+.+| +.+..+.++.+++.++..+..
T Consensus 255 vl~~~----~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~------- 311 (428)
T PF13347_consen 255 VLGNE----G-LISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLAALGFLLLFFLG------- 311 (428)
T ss_pred HhcCc----h-hhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHHHHHHHHHHHHH-------
Confidence 12211 0 111223344455555556555555444433 237778888888887776652
Q ss_pred hhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 388 VNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-------SMRSLATSLSWASLAMGYYFSTVLVS 460 (517)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~gi~~~~~~ig~~l~~~~~~ 460 (517)
..+.+++.+..++.|++.+...+..+++..|..+. +..|...|+.++...++..+++.+.+
T Consensus 312 ------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 312 ------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred ------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 13667888888999999999888888999988874 45799999999999999999999999
Q ss_pred HhhhccccCCCCCCccCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 461 IVNNITSTYRHTPWLFGS-NLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
.+....+-+ ++. +............++.+-++..++...+..+|+
T Consensus 380 ~~l~~~Gy~------~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 380 LLLALVGYD------ANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred HHHHHhCcC------CCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 887654322 110 122233344444444444444444445555554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=132.54 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=111.0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+++-|...+.+.-..+.-+++...|.++|+ +||||.+.+..+..++...+-+.++
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp----------------------- 164 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP----------------------- 164 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC-----------------------
Confidence 4567788999999999999999999999999 5999999999888888888877774
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
++..+++.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....+|.++.-.+.-.+..++||||...
T Consensus 165 --nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 165 --NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF 234 (528)
T ss_pred --CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 566899999999999999 9999999999999777 77766665 6667888888888877778899998877
Q ss_pred HHHH
Q 010145 162 ISTA 165 (517)
Q Consensus 162 i~~~ 165 (517)
...+
T Consensus 235 ~~~~ 238 (528)
T KOG0253|consen 235 TSST 238 (528)
T ss_pred HHHh
Confidence 5543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=134.42 Aligned_cols=147 Identities=14% Similarity=-0.011 Sum_probs=99.9
Q ss_pred CCCchhhHHH--HHHHHHHHHHhhhhh-HHhhcccCcchHHHHHHHHHHHH-HHHHHHHhhhccCCCCCCcccccCCCcc
Q 010145 2 HFSPSSSANI--VTNFMGTAFLLALFG-GFLADAFFTTYRIYVISAAIEFM-GLLLLTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 2 ~~s~~~~~~i--~s~f~~~~~l~~l~~-G~laDr~~Grk~~l~~~~~l~~i-g~~l~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
|.|.++.|.+ .+.......+..|+. ++..|| +||||..++.+.+... .....+... +.
T Consensus 32 g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~--~~--------------- 93 (390)
T TIGR02718 32 GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVG--PD--------------- 93 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCC--cc---------------
Confidence 6788899987 455566666666555 668999 4999997666533222 222222110 10
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
......++...++.++..+...+....+..|..++++ ++...+...++..+|..+|+...+++.+.+|||
T Consensus 94 ----~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 94 ----VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 0012334455556667777778888888777766555 777888888888999999999899999889999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 010145 158 WGFGISTATILLSIPIFLL 176 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~ 176 (517)
..|++.++..++..+..++
T Consensus 164 ~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888776655544433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-12 Score=138.54 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=111.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|+.|.+++.+.... ..++.+++|+++||+ |||+++.++.+++++|+++++++.+. .+.
T Consensus 57 lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~--~i~--------------- 117 (591)
T PTZ00207 57 YNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE--VIE--------------- 117 (591)
T ss_pred hCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc--ccc---------------
Confidence 58899999999887443 345677899999995 99999999999999999999997321 111
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i-g~~i~g~l~~~~gw~~~ 159 (517)
.+++.+++.|++.|+|.+...+.....+.+++| ++ |+++.++.....++|+++ ++...+++.+ +|+..
T Consensus 118 --~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~ 186 (591)
T PTZ00207 118 --GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAY 186 (591)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHH
Confidence 168889999999999999999999999999997 44 999999999999999975 5555666653 67777
Q ss_pred HHHHHHHHHH
Q 010145 160 FGISTATILL 169 (517)
Q Consensus 160 f~i~~~~~~~ 169 (517)
|++.++..++
T Consensus 187 fl~l~vl~~v 196 (591)
T PTZ00207 187 FFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHH
Confidence 7765555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=143.57 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=111.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCc-----chHHHHHHHHHHH-HHHHHHHHhhhccCCCCCCcccccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT-----TYRIYVISAAIEF-MGLLLLTVQAHTRSLKPPTCVLEDGI 74 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~G-----rk~~l~~~~~l~~-ig~~l~~~a~~~~~~~~~~~~~~~~~ 74 (517)
+|.|.++.+...+...+...+-++ .|.++||+ + ||+.++++.++.. ++...++..++
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~--------------- 118 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILYGLLPGKVS--------------- 118 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHHHhcccccc---------------
Confidence 588999999999999999999776 99999995 8 7887787776653 33222222110
Q ss_pred CcccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 75 ASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK 154 (517)
Q Consensus 75 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~ 154 (517)
......+.+++.+++.+...++..+++.|..+ +++ +.++...++.+...++|.++|+.++|++.+.+
T Consensus 119 ---------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~ 185 (468)
T TIGR00788 119 ---------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKT 185 (468)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23344457889999999999999999999998 432 22555677888888999999999999999989
Q ss_pred CchhhHHHHHHHHHHHHHHHHh
Q 010145 155 GWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
+|+..|++.+.+.++.++...+
T Consensus 186 ~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 186 LTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred CcchHHHHHHHHHHHHHHHHHh
Confidence 9999999887776655433333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-12 Score=137.13 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=103.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhc----ccCcc-hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLAD----AFFTT-YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA 75 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laD----r~~Gr-k~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~ 75 (517)
+|++..++|.+...-.+..++..|+.|+++| | ||| |+-++++....+++.+++-..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~~p~~--------------- 100 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFSAHLF--------------- 100 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHcCCCC---------------
Confidence 4789999999999999999999999999999 6 599 556666777777776665332110
Q ss_pred cccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----c
Q 010145 76 SCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI----E 151 (517)
Q Consensus 76 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l----~ 151 (517)
++......+++..++.+++.........+++.|..++++ +|.+..++.....++|..+++.+...+ .
T Consensus 101 ----~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 101 ----EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111234556666677788888899999999999986443 299999998888888866665554332 1
Q ss_pred ---cccCchhhHHHHHHHHHHHHHH
Q 010145 152 ---DNKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 152 ---~~~gw~~~f~i~~~~~~~~l~~ 173 (517)
+..+|+....+.++..++..+.
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHH
Confidence 1235666666555554443333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-12 Score=124.07 Aligned_cols=143 Identities=21% Similarity=0.259 Sum_probs=128.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.+++|.+.+.=.+...+..+++.+++.| +|.++.+..++++.++|.++=...
T Consensus 42 ~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~----------------------- 97 (395)
T COG2807 42 LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG----------------------- 97 (395)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-----------------------
Confidence 47899999999999999999999999999999 599999999999999999987664
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
+.+.++.+-.+.|.|.+......|..+.+.||++ -+..++.|...+++|+.+++.+...+.++. |||..
T Consensus 98 ---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a 167 (395)
T COG2807 98 ---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA 167 (395)
T ss_pred ---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence 3457999999999999999999999999999964 679999999999999999999999898766 79999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010145 160 FGISTATILLSIPIFLLG 177 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~ 177 (517)
..+-....++++++++.-
T Consensus 168 L~~WAl~allAl~~WlPq 185 (395)
T COG2807 168 LGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 998888888888887764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=127.88 Aligned_cols=361 Identities=16% Similarity=0.128 Sum_probs=193.2
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++.++..++.....
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~----------------------- 89 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS----------------------- 89 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 689999999999999999999999999999964467777776666555544444432
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcccc---Cch
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF-VVWIEDNK---GWQ 157 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i-~g~l~~~~---gw~ 157 (517)
+++.+++..++..+......|...++..+..++ ++.-++-.....++|..++.+. ++++.... +..
T Consensus 90 --~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~ 159 (400)
T PF03825_consen 90 --SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTS 159 (400)
T ss_pred --cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 345566667777777777888888888777663 2233344444555555555332 22222222 223
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
..+++.....++... +.+..|..+.++..+++
T Consensus 160 ~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~----------------------------------------------- 191 (400)
T PF03825_consen 160 LIFYIAAILSLLLAG-FALFLPKTPPKRSAKES----------------------------------------------- 191 (400)
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCCccccccCCC-----------------------------------------------
Confidence 455555443322221 11212221100000000
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
.++. ...+. + +-.++++.++.. +...+......-++++. ..+++.. ++
T Consensus 192 -----~~~~---~~~~~---------~-----~llk~~~~~~Fl----l~~~l~~~~~~~~~~f~---~~yl~~~-gg-- 239 (400)
T PF03825_consen 192 -----VKKL---LGLDA---------L-----KLLKNPRFLVFL----LAAFLIGISHAAYYTFF---SIYLQEL-GG-- 239 (400)
T ss_pred -----cccc---cchHH---------H-----HHhcCccHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHc-cc--
Confidence 0000 00000 0 000111111111 11111111111112211 1122221 11
Q ss_pred eCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 010145 318 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 397 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (517)
+..-..........+.|.......+|..+| .+..+.+.++.+..++=+.+++...+
T Consensus 240 -----~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~~---------------- 295 (400)
T PF03825_consen 240 -----YSGSTIGILWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFSD---------------- 295 (400)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence 000111111223333444443333444444 57777788888887777777666410
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 010145 398 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA-SLAMGYYFSTVLVSIVNNITSTYRHTPWLF 476 (517)
Q Consensus 398 ~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (517)
+.........+..++.|+..++..++...|+.+.+|++.|++++++++. ...+|..+|+.+.+.+.+.-+.
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~-------- 367 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA-------- 367 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--------
Confidence 0001111122334578999999999999999999999999999999885 5789999999999988743211
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 477 ~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
+ ....+..++.+.+++.++..+++++..|+.
T Consensus 368 ~---~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 368 R---GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred h---hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 012244566677777777777777665443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-10 Score=119.54 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+.+.+.-++.|+..+...+..-++..+..|++.++...|++.+.....+++||.+++.+.+.++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------------- 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------------- 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 344455555789999999999999999999999999999999999999999999999999987653
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
+.++-++.+.++.++++++++.+..+.
T Consensus 445 --~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 445 --SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred --CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 235567888888888887776554433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-11 Score=123.88 Aligned_cols=358 Identities=10% Similarity=0.044 Sum_probs=194.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHH--HHHHHH-HHhhhccCCCCCCcccccCCCccc
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF--MGLLLL-TVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~--ig~~l~-~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
|+|.+|.|.+.++-.+...+.+|+.|.++|| +|.||-+++...+.. .|.... .+.+-+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~---------------- 101 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS---------------- 101 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 7899999999999999999999999999999 497776655443322 233322 22221110
Q ss_pred CCCCchhHHHHHHHHHHHHhcccc----cccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGI----KGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK 154 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~----~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~ 154 (517)
+ ++++-++.|+..+.. .|+..+++-+... +.+-=++=.....++|.+++..++|++.+ .
T Consensus 102 -----n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--------~~~feYG~~R~wGSig~ai~s~~~G~L~~-i 164 (412)
T PF01306_consen 102 -----N---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--------RNGFEYGRARMWGSIGFAIASLLAGILFN-I 164 (412)
T ss_dssp -----T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--------HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred -----H---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--------HhcCCcchHHHHhhHHHHHHHHHhheeee-e
Confidence 1 334444444444433 3444444433321 23444556667788999999999999975 5
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCC
Q 010145 155 GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS 234 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (517)
+-+..||+.....++..++.+...+..+++.+.. |.+.
T Consensus 165 ~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~--------------------------------------~~~~---- 202 (412)
T PF01306_consen 165 NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA--------------------------------------DALG---- 202 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS--------------------------------------TTSS----
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh--------------------------------------cccc----
Confidence 6688999876655544444333322111100000 0000
Q ss_pred cccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhh-hchhHHHHHHHHhccCC
Q 010145 235 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLA-QLSTFSVQQAATMNTKL 313 (517)
Q Consensus 235 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 313 (517)
.+.++.+..|... ..++ |+++....+.......+..+. |.+.++.. ..+..
T Consensus 203 ---------~~~~~~~~~~~~~--------------l~k~-~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~---~f~~~- 254 (412)
T PF01306_consen 203 ---------AKKDKVSLKDVLS--------------LFKM-RNFWFFVLFVIGVAAIYDVFDQQFPIYFAS---FFQSA- 254 (412)
T ss_dssp ---------S------HHHHHH--------------HTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSSH-
T ss_pred ---------cCCCCCcHHHHHH--------------Hhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhccc-
Confidence 0000000100000 0011 233333333333333344443 43333221 11111
Q ss_pred CCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010145 314 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV 393 (517)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 393 (517)
+.....+...+++-+ +.-.+.-.+..++.+| .+++..+.++..++++=....+..
T Consensus 255 ---~~g~~~~G~l~s~~v-~~E~~~m~~~p~li~r-------ig~k~~Lllag~i~~iRi~~~~~~-------------- 309 (412)
T PF01306_consen 255 ---GQGNQMYGYLWSVQV-FLEALMMFFSPWLINR-------IGAKNLLLLAGVIMAIRIIGSGFA-------------- 309 (412)
T ss_dssp ---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred ---ccChhHHhHHHHHHH-HHHHHHHHHHHHHHHh-------cChHhHHHHHHHHHHHHHHHHhhh--------------
Confidence 000011222222111 1111112223333344 355555666666666666555553
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCC
Q 010145 394 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHT 472 (517)
Q Consensus 394 ~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 472 (517)
++++++++.-.+.++-..+...+..-|+.+..|++..++...+. ++..++|..+.+.+.+.+.+
T Consensus 310 -------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd-------- 374 (412)
T PF01306_consen 310 -------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD-------- 374 (412)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--------
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh--------
Confidence 57788999999999999999999999999999999999988885 58899999988888888763
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 473 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 473 ~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
+.+++..|++++.+.++..++-.+..++.++
T Consensus 375 ---------~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 375 ---------RIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred ---------hcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 3566778999999888777776666555544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=113.82 Aligned_cols=134 Identities=13% Similarity=0.216 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHH
Q 010145 11 IVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFA 90 (517)
Q Consensus 11 i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (517)
+.+.+.++..++.++.|+++||+ |||+.+..+..+..++.++...+. +.+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 56 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-------------------------NITVLII 56 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-------------------------cHHHHHH
Confidence 34567788899999999999995 999999999999999988877753 4667888
Q ss_pred HHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 010145 91 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS 170 (517)
Q Consensus 91 ~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~ 170 (517)
.+++.|++.+...+....++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.....++.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 9999999999999999999999999998889999999877766655
Q ss_pred HHHHHh
Q 010145 171 IPIFLL 176 (517)
Q Consensus 171 l~~~~~ 176 (517)
.+...+
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 544443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-10 Score=116.96 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=107.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcc---cCcchHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADA---FFTTYRIYV-ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr---~~Grk~~l~-~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|+++..+|.+...--+..++.-|+.|+++|| .+||||-.+ ++.+..+++.+++-..+..
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~---------------- 103 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL---------------- 103 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC----------------
Confidence 47889999999999999999999999999996 269987666 4657777776555433210
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc---
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--- 153 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~--- 153 (517)
++......+.+.-++..++.........++..|..++.+ +|.+..++.....++|..+++.+...+...
T Consensus 104 ---s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~ 175 (460)
T PRK11462 104 ---SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG 175 (460)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112234456666667788888888899999999998655 399999999999999988887765443221
Q ss_pred ----cCchhhHHHHHHHHHHHHHHH
Q 010145 154 ----KGWQWGFGISTATILLSIPIF 174 (517)
Q Consensus 154 ----~gw~~~f~i~~~~~~~~l~~~ 174 (517)
.+|+....+.++..++...+.
T Consensus 176 ~~~~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 176 DNKPLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHH
Confidence 356665555554444444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=121.59 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=105.6
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
++.++...+.+.|.....+.+.++|++.||.+|.|..-.+-+.+.++|-++.+...-.+
T Consensus 76 i~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~--------------------- 134 (459)
T KOG4686|consen 76 IEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH--------------------- 134 (459)
T ss_pred cceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH---------------------
Confidence 44556677888899999999999999999999998877777777788888777643212
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK 154 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~ 154 (517)
.++.+.++|++.|+|.-....+-..|..-+|+.+| .+.+++++....-+|+.+-..+.+++.+..
T Consensus 135 -aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 135 -AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred -HHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 68899999999999999999999999999999988 999999999999999988887788886643
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-09 Score=104.66 Aligned_cols=352 Identities=14% Similarity=0.078 Sum_probs=197.3
Q ss_pred hhhhhHHhhcccCc-----chHHHHH-HHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHH
Q 010145 22 LALFGGFLADAFFT-----TYRIYVI-SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 95 (517)
Q Consensus 22 ~~l~~G~laDr~~G-----rk~~l~~-~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 95 (517)
..+..|+.+|+. + ||.-+++ |..+++.|..+.+.+.-.-. + .......+.+.......++-.+.
T Consensus 30 ~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~-------~~~~~~~~~~~g~~~a~l~F~l~ 99 (403)
T PF03209_consen 30 LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E-------SGQQSSGPFWLGLALAALAFLLY 99 (403)
T ss_pred HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c-------cccccccccHHHHHHHHHHHHHH
Confidence 468899999996 7 5555544 66666666666665531110 0 00011223333445666777789
Q ss_pred HHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH-HHHH---HHHHHH
Q 010145 96 ALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG-ISTA---TILLSI 171 (517)
Q Consensus 96 G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~-i~~~---~~~~~l 171 (517)
|+|.+....+..++++|..||++ |+++.++.|.+.-+|.+++..+.|.+-+.++-.-... +..+ ..++.+
T Consensus 100 G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ 173 (403)
T PF03209_consen 100 GLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNL 173 (403)
T ss_pred HhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 9999999999999999999999888877666432222 2222 222222
Q ss_pred HHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCCCCCchhHH
Q 010145 172 PIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKF 251 (517)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (517)
+..+-.+++.+...+.+ +.++..+
T Consensus 174 ia~wg~E~r~~~~~~~~--------------------------------------------------------~~~~~~f 197 (403)
T PF03209_consen 174 IALWGQEPRRSRRAAAA--------------------------------------------------------ERPRPPF 197 (403)
T ss_pred HHHHhcccCCcccccCC--------------------------------------------------------CCCCccH
Confidence 22222222211111000 0000111
Q ss_pred HHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCC--eeeCC---CCcCCc
Q 010145 252 LNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS--LKVPP---ASLPVF 326 (517)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~ 326 (517)
.+.... ...+ .+.++++. .+++....+++.-.-+ ++.++ ++.++ +.++.+
T Consensus 198 ~~a~~~---------~~~~--~~a~~f~~--fl~l~t~a~~~QD~iL------------EPygg~Vfgmsv~eTT~Lta~ 252 (403)
T PF03209_consen 198 REAWRQ---------VWAS--PQARRFFV--FLFLGTLAFFMQDVIL------------EPYGGEVFGMSVGETTRLTAF 252 (403)
T ss_pred HHHHHH---------HHhC--CChhHHHH--HHHHHHHHHHhhHHHc------------CCchhHHcCCCHHHHHHHHHH
Confidence 111100 0000 01111111 1111121111111111 11111 11221 234455
Q ss_pred hhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHH
Q 010145 327 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 406 (517)
Q Consensus 327 ~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (517)
.....++...+..+... +| .++.+...+|+.+.++++....... ..-+.+.+
T Consensus 253 ~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~------------------~~~~~~~~ 304 (403)
T PF03209_consen 253 WGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAG------------------PLGSPWLF 304 (403)
T ss_pred HHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHH------------------hcccchHH
Confidence 55555555555444442 22 2333345567777666665544431 11245677
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhh
Q 010145 407 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 486 (517)
Q Consensus 407 i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (517)
....+++|++.+.......+...+.++++..|+.+|.|..++.++..++..+.+.+.+... ++.+ +-....|.
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~------~~~~-~~~~~aY~ 377 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR------ALFG-NSPALAYG 377 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhcc-CCcchHHH
Confidence 8888999999999999999999999999999999999999999999998888888765432 1111 11123455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010145 487 RFYWLMCILGGLNFLHFLF 505 (517)
Q Consensus 487 ~~f~~~~~l~lv~~~~~~~ 505 (517)
..|.+=+++.++++++...
T Consensus 378 ~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 378 VVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566656666655554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=125.02 Aligned_cols=147 Identities=10% Similarity=0.084 Sum_probs=121.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
.++.+.+.+...++..++.++.|+++||+ |||+++.++.++.+++..+...+...+ ..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~~~---------------------~~ 307 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDPEY---------------------FG 307 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCcch---------------------hh
Confidence 45678999999999999999999999995 999999999999988877776642101 13
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhccc------cCch
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDN------KGWQ 157 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~------~gw~ 157 (517)
.+.+++.+++.|++.+...+....++.|.+|+++ |++.+++.+ ...++|..+||.++|++.+. +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567888999999999999999999999999887 999999997 56789999999999999876 4799
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC
Q 010145 158 WGFGISTATILLSIPIFLLGSP 179 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~ 179 (517)
..|.+.++..+++.+.+++..+
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999887776665555544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-09 Score=107.41 Aligned_cols=336 Identities=12% Similarity=0.097 Sum_probs=203.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc---CcchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~---~Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
.|+|...+|.+...--+..++.-|+.|.+.||. |||+|-. +++.+.+++.+.++=.+++.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~---------------- 106 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDF---------------- 106 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCc----------------
Confidence 478888999999999999999999999999974 5876654 55668888888888776421
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---- 152 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~---- 152 (517)
+...+....++--++.+++..++.....++..+..++.+ +|.+..++..+..++|..+...+.+.+..
T Consensus 107 ---~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 107 ---SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred ---ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112355666777788899999999999999999998765 39999999999999997776665544431
Q ss_pred ---ccCchhhHHHHHHHHHHHHHHHHhcCCc-ccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCC
Q 010145 153 ---NKGWQWGFGISTATILLSIPIFLLGSPF-YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNES 228 (517)
Q Consensus 153 ---~~gw~~~f~i~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (517)
..||+..-.+-++...++++.+++..++ ..+..+.++
T Consensus 179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~--------------------------------------- 219 (467)
T COG2211 179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT--------------------------------------- 219 (467)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc---------------------------------------
Confidence 3577766666655555555544443221 111111000
Q ss_pred CcCCCCcccCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 010145 229 RDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT 308 (517)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (517)
....++.+... ....+|.++..+ ....+.++..+...+..++.
T Consensus 220 -----------------~~~~~~~~~~~--------------~~~~Nrp~~~~l---~~~l~~~~~~~i~~s~~~yy--- 262 (467)
T COG2211 220 -----------------GVKLKLKDSFL--------------LIFKNRPLLLLL---LMNLLLFIAFNIRGSIMVYY--- 262 (467)
T ss_pred -----------------cccccHHHHHH--------------HHHccchHHHHH---HHHHHHHHHHHHHhhhhhee---
Confidence 00000000000 001112222221 23333344444444433332
Q ss_pred hccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 309 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV 388 (517)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~ 388 (517)
.+-.++.-...+...........++..++ ..++.+|. ..++...+|.++.+++.+.+.+..
T Consensus 263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~----~p~L~~~~-------gkk~~~~~~~~~~~i~~~~~~f~~-------- 323 (467)
T COG2211 263 VTYVLGDPELFAYLLLLASGAGLLIGLIL----WPRLVKKF-------GKKKLFLIGLLLLAVGYLLLYFTP-------- 323 (467)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHHHHh----HHHHHHHh-------chHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 22222111111101111111111111222 22333332 334557778888888887777751
Q ss_pred hcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 389 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSI 461 (517)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~l~~~~~~~ 461 (517)
..+.+.+++..++.+++.+...+..++++.|... .+..|...|...+.+-+|..++..+.+.
T Consensus 324 -----------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 324 -----------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred -----------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244556666688899999999999999988654 3456788899999999999999999998
Q ss_pred hhhcc
Q 010145 462 VNNIT 466 (517)
Q Consensus 462 ~~~~~ 466 (517)
+....
T Consensus 393 ~L~~~ 397 (467)
T COG2211 393 ILGAI 397 (467)
T ss_pred HHHHc
Confidence 88654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-10 Score=110.63 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---------- 153 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~---------- 153 (517)
+++.++++.++.|.|.+..+++.++++++..++++ +.+.+++...+..+|+.++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 68899999999999999999999999999998877 88999999999999999999999977631
Q ss_pred ------cCchhhHHHHHHH
Q 010145 154 ------KGWQWGFGISTAT 166 (517)
Q Consensus 154 ------~gw~~~f~i~~~~ 166 (517)
.+|+++|++-+.+
T Consensus 83 ~~~~~~~~~~~~yl~ia~~ 101 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGA 101 (310)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4799999954443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=119.95 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=119.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
++.++..+.+.++..++.++.|++.||+ ||||.+..+..+..++.++....+ +.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 302 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-------------------------SP 302 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-------------------------cH
Confidence 3456777888899999999999999995 999999999988888887777653 34
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 165 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~ 165 (517)
+.+++++++.|++.+...|.....+.|.+|+++ |+++.++++...++|..+++.+.|++.+..||+..|++.++
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 376 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAAL 376 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 567788999999999999988888889888776 99999999999999999999999999988999999998887
Q ss_pred HHHHHHHHHHhcCC
Q 010145 166 TILLSIPIFLLGSP 179 (517)
Q Consensus 166 ~~~~~l~~~~~~~~ 179 (517)
..+++++..+...+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (399)
T PRK05122 377 AALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHhcc
Confidence 77776665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=118.98 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=120.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+.++++++.+.+.++..++.+++|+++||+ |||+.+.++..+..++.++....++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 293 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPML-------------------- 293 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHcccc--------------------
Confidence 366778889999999999999999999999995 99999999999999888877665321
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+...+++..++.|++.|...+..+.++.|.+|+++ |++.+++.+...++|..++|.+.|++.+..||++.|
T Consensus 294 ---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 364 (377)
T TIGR00890 294 ---NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTF 364 (377)
T ss_pred ---hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH
Confidence 12235566788899999988999999999999887 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHH
Q 010145 161 GISTATILLSI 171 (517)
Q Consensus 161 ~i~~~~~~~~l 171 (517)
.+.++..++++
T Consensus 365 ~~~~~~~~~~~ 375 (377)
T TIGR00890 365 IVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHhc
Confidence 98777665543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=114.14 Aligned_cols=141 Identities=23% Similarity=0.302 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYR-IYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~-~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
|.+..+.+++.+.+.++..++.++.|++.||+ |||+ .+..+..+..++.++.....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~---------------------- 263 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLALAP---------------------- 263 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 67889999999999999999999999999995 9999 99999999999998888763
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+...+++..++.|++.+...+....++.|..|+++ |++.+++.....++|..++|.+.+++.+..+|+..|
T Consensus 264 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~ 334 (352)
T cd06174 264 ---SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVF 334 (352)
T ss_pred ---cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Confidence 35678899999999999999999999999999876 999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIF 174 (517)
Q Consensus 161 ~i~~~~~~~~l~~~ 174 (517)
.+..+..+++.+..
T Consensus 335 ~~~~~~~~i~~i~~ 348 (352)
T cd06174 335 LILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=125.30 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHH
Q 010145 9 ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVML 88 (517)
Q Consensus 9 ~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (517)
........++..++.+++|+++|| +|||+++.+++++.+++.++.+++. +...+
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------------------s~~~l 651 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------------------SESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------------------cHHHH
Confidence 444556678889999999999999 5999999999999999998888764 33457
Q ss_pred HHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 010145 89 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 168 (517)
Q Consensus 89 ~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~ 168 (517)
++.+++.|+..++..+...++++|++|.+. |++++++.+....+|+++||.+++++.. .+...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 777888888888899999999999999887 9999999999999999999999998865 356778887777666
Q ss_pred HHHHHHHh
Q 010145 169 LSIPIFLL 176 (517)
Q Consensus 169 ~~l~~~~~ 176 (517)
++.++.++
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-10 Score=117.65 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=109.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+++.+...++..++.+++|+++||+ |||+++..+.++..++.+.+....+.+
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~------------------- 340 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILINSN------------------- 340 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhCC-------------------
Confidence 367777888888889999999999999999995 999999988876555444322211101
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
+...++++|++.|++.+...+....++.|.+|++. |+.++++.+....++..++|.+.+++.+.. +|+.+
T Consensus 341 ---~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~ 411 (490)
T PRK10642 341 ---VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMP 411 (490)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 35567889999998888777888888999999887 999999866667777788999999887654 47777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010145 160 FGISTATILLSIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~ 176 (517)
+++..+..+++++..++
T Consensus 412 ~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 412 AYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555544444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-10 Score=115.47 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=114.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++.+++++.+...+...++.+++|+++||+ |||+.+..+.....+.......+.
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 303 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH---------------------- 303 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 467888999998888888888999999999995 999998877666555443333332
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+++.+++.+++.|...+..+.+..|.+|+ + |+++.+++....++|..+||.++|++.+.++|+..|
T Consensus 304 ---~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~ 373 (393)
T PRK15011 304 ---SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF 373 (393)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345677888888888887777777888888773 4 888999998899999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
++..+..+++++..+.
T Consensus 374 ~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 374 WFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888777776665543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-09 Score=104.16 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=103.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
.+.+-|+.-+|++.+....+.+-|+.||+ |-|.+.+++.++.++|+.+=.++.. |. ++| ...
T Consensus 78 ~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~-v~~---------------~f~ 139 (480)
T KOG2563|consen 78 SSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PF-VPP---------------LFR 139 (480)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cc-ccc---------------cch
Confidence 44567888899999999999999999995 9999999999999999999777642 21 111 112
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
....+.+..+.+.+.-.+....+.+.+-||+++| |..+..+-.++..+|.++|.++.+.+..
T Consensus 140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 3488899999999999999999999999999988 9999999999988999998888777753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=115.44 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHH
Q 010145 8 SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVM 87 (517)
Q Consensus 8 ~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (517)
.+.+.+.+.++..++.++.|+++||+ |||+.+..+..+..++.+...... +.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 313 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ-------------------------TPLQ 313 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc-------------------------cHHH
Confidence 34555667778888889999999995 999999999888777776665543 3456
Q ss_pred HHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 010145 88 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 167 (517)
Q Consensus 88 l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~ 167 (517)
+++.+++.|++.+...|....++.|..|+++ |++.+++++...++|..+||.++|++.+..||+..|++.+++.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~ 387 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVV 387 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHH
Confidence 7889999999999999999999999888776 9999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHh
Q 010145 168 LLSIPIFLL 176 (517)
Q Consensus 168 ~~~l~~~~~ 176 (517)
+++.+..++
T Consensus 388 l~~~~~~~~ 396 (408)
T PRK09874 388 LFNAVYSWN 396 (408)
T ss_pred HHHHHHHHH
Confidence 776655444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=118.36 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=117.3
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+..+.+++.+.+.++..++.+++|+++||+ |||+.+..+..+.+++.++.++++
T Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~------------------------ 313 (420)
T PRK09528 259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT------------------------ 313 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc------------------------
Confidence 4556778999999999999999999999995 999999999999999888887764
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 83 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 83 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+.+.+++.+++.|++.+...+....++.|.+|++. |+...+. +....++|..++|.++|++.+..||+..|.
T Consensus 314 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 314 -GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 44567888999999999888888899999998766 6666554 566788999999999999999899999999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 162 ISTATILLSIPIFL 175 (517)
Q Consensus 162 i~~~~~~~~l~~~~ 175 (517)
+.++..++..++.+
T Consensus 387 ~~~~~~~i~~~~~~ 400 (420)
T PRK09528 387 ILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 87666655444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=112.08 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=115.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++.+++++.+........+.+++|++.||+ |||+.+.++..+..++.++....+
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 286 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN---------------------- 286 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 367888899988887777788889999999995 999999988776655554444432
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+++.+++.|++.|...+....+..|..|+ + |++..++++...++|..++|.++|++.+..||+..|
T Consensus 287 ---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~ 356 (375)
T TIGR00899 287 ---SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVY 356 (375)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 345677788899999998888888899998764 3 668999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++..+..+++.+...
T Consensus 357 ~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 357 WFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.3e-10 Score=114.10 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
+.++..+.+.++..++.++.|++.|| +||||.+..+..+.+++.++..... +..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 303 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-------------------------TAW 303 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-------------------------cHH
Confidence 45667777888888999999999999 5999999999999998888776653 345
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT 166 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~ 166 (517)
.+++.+++.|++.+...|.....+.|.+|+++ |++.+++++...++|..++|.+.|++.+..||+..|.+..+.
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 67788899999999999998899999998777 999999999999999999999999999989999999988877
Q ss_pred HHHHHHHHH
Q 010145 167 ILLSIPIFL 175 (517)
Q Consensus 167 ~~~~l~~~~ 175 (517)
.+++.+..+
T Consensus 378 ~~~~~~~~~ 386 (392)
T PRK12382 378 AVLGIIVTI 386 (392)
T ss_pred HHHHHHHHH
Confidence 776665544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=110.65 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=114.8
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+.++++++.+.+.++..++.++.|+++||+ |||+.+..+..+..++.++.. ..
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~----------------------- 285 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ----------------------- 285 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh-----------------------
Confidence 67788899999999999999999999999995 999999999888887765543 10
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
..+...+++.|++.+...|.....+.|..|+++ ++...+.+....++|..+||.++|++.+..+|++.|.
T Consensus 286 ----~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~ 355 (381)
T PRK03633 286 ----AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFI 355 (381)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 124457778888888889999999999988765 6777777788889999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 010145 162 ISTATILLSIPIFLL 176 (517)
Q Consensus 162 i~~~~~~~~l~~~~~ 176 (517)
+.+...+++.+..+.
T Consensus 356 ~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 356 MIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHHh
Confidence 877766655544433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=113.24 Aligned_cols=144 Identities=13% Similarity=-0.007 Sum_probs=120.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+++.+.+.++..++.+++|++.||. ++++.+..+..+.+++.++....+
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---------------------- 310 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP---------------------- 310 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc----------------------
Confidence 467888999999999999999999999999994 888899988888888877766543
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.....++.++.|++.+...+...+++.|..|++. |++.+++++...++|..+||.++|++.+.+|++..+
T Consensus 311 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~ 381 (417)
T PRK10489 311 ---MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASA 381 (417)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHH
Confidence 44567788888999998888888899999999776 999999999999999999999999999989998888
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
.+.+...++..+....
T Consensus 382 ~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 382 SASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8666554443333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-11 Score=130.60 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=3.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccC------C
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDG------I 74 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~------~ 74 (517)
++++.+++|++.+.|.++..+..++..|+++|. -|-|.+-+|.+++++|+++.++ |.++.+.|..... .
T Consensus 33 F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----Phf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 33 FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----PHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----cHhhcCCCcccccccccccc
Confidence 578999999999999999999999999999994 8889999999999999999998 3333333321100 0
Q ss_pred ----Ccc-------------------cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH
Q 010145 75 ----ASC-------------------REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 131 (517)
Q Consensus 75 ----~~~-------------------~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~ 131 (517)
..| .++...-+.+|+++.++.|+|....++...+|+=|..++++ -+..+++
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi 181 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGI 181 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc------Cccchhh
Confidence 011 22233346789999999999999999999999999999877 7889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---------------------cc-CchhhHHHHHHHHHHHHHHHHhcCCcccc
Q 010145 132 YVFCLSCGALIAVTFVVWIED---------------------NK-GWQWGFGISTATILLSIPIFLLGSPFYRN 183 (517)
Q Consensus 132 ~~~~~~lG~~ig~~i~g~l~~---------------------~~-gw~~~f~i~~~~~~~~l~~~~~~~~~~~~ 183 (517)
.+.+..+|+++|..+++.... +. .|...|.+.+...++..+.++..+++.+.
T Consensus 182 ~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 182 LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 999999999999999886642 11 37777777776665554444544444444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-08 Score=105.19 Aligned_cols=319 Identities=15% Similarity=0.119 Sum_probs=192.2
Q ss_pred HHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHH
Q 010145 16 MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 95 (517)
Q Consensus 16 ~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 95 (517)
.+...+..+.-|.++||+ |||..+.+.+....+..+...+.. ++ +++ +.
T Consensus 72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~--------------------------~~-~~~---~~ 120 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG--------------------------YW-FFL---LL 120 (463)
T ss_pred HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH--------------------------HH-Hhh---hc
Confidence 356677889999999995 999999999999999988888862 22 222 44
Q ss_pred HH--hcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 010145 96 AL--GVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 96 G~--g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~~ 173 (517)
++ +.+.......++++|....++ |...+++.......+..++|.+++++....|.-.+|.++.++.+++++-
T Consensus 121 ~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y 194 (463)
T KOG2816|consen 121 GLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLY 194 (463)
T ss_pred ccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 43 345567788889999998877 9999999999999999999999999999999999999999988877766
Q ss_pred HHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCCCCCCCCc-hhHHH
Q 010145 174 FLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE-DIKFL 252 (517)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~l 252 (517)
..+..|+-..++.+++ ...+...+. ..+... ...+.
T Consensus 195 ~~~~l~Esl~~~~~~~-------------~~~~~~~~~------------------------------~~~~~~~~~~~~ 231 (463)
T KOG2816|consen 195 MLLFLPESLQEKERSD-------------ATLRELTPG------------------------------SLDSSHVADAFQ 231 (463)
T ss_pred HhhccccccCcccccc-------------ccccccCCC------------------------------cccchhhhhhhh
Confidence 5554443222211110 000000000 000000 00000
Q ss_pred HHhhhcCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCcCCchhHHH
Q 010145 253 NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPI-FMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFI 331 (517)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (517)
.. .. ...+|..+.++.. +.... ....+.... ...+.+.+++......+.+.....+..
T Consensus 232 ~~-------------~~--~~~~r~~l~l~l~~~~~~~---~~~~~~~~~---~~~yl~~~f~w~~~~~s~~~~~~~~~~ 290 (463)
T KOG2816|consen 232 SL-------------TK--VGPDRLLLLLLLVAFLSSL---PEAGGASDV---LLLYLKAKFGWNKKEFSDLLSLVSILG 290 (463)
T ss_pred hh-------------cc--cCCCccchHHHHHHHHHHH---HHhcCceeE---EEEEEeeecCcCHHHHHHHHHHHHHHH
Confidence 00 00 0111222211111 11111 111000000 011223332211111111222223332
Q ss_pred HHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHH
Q 010145 332 LILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYL 411 (517)
Q Consensus 332 ~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 411 (517)
.+... +..+...+.. .....+..|+....+..++.++.. .. |+.....
T Consensus 291 ~i~~l----~~~~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~---------------------~~-w~~~~~~ 338 (463)
T KOG2816|consen 291 IISQL----LLLPLLSSIL------GEKRLISLGLLSEFLQLLLFAFAT---------------------ET-WMMFAAG 338 (463)
T ss_pred HHHHH----HHHHHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhc---------------------cc-hhhhHHH
Confidence 33222 2222222221 222358889999999999888863 22 3444445
Q ss_pred HHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010145 412 FLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS 467 (517)
Q Consensus 412 l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~ 467 (517)
..........|..-+++...++++.+|++.++......+.+.+++.+.+.+...+.
T Consensus 339 v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 339 VVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 56666677889999999999999999999999999999999999999998877664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=114.09 Aligned_cols=146 Identities=19% Similarity=0.145 Sum_probs=110.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..++++..+.+.++..++.+++|+++||+ |||+.+.....+..++..+..+... .
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~~-~------------------- 347 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQHA-T------------------- 347 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHhc-C-------------------
Confidence 478889999999999999999999999999995 9999887765555544333333210 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhcc-------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIED------- 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~------- 152 (517)
+....++.+++.|+..............|.+|+++ |+.+.++.....++ |..++|.+.|++.+
T Consensus 348 ---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 348 ---SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred ---cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 34456677777876544433333466779999877 99999999999997 77999999999988
Q ss_pred -----ccCchhhHHHHHHHHHHHHHHHHh
Q 010145 153 -----NKGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 153 -----~~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
..+|+..|.+..+..+++.+..+.
T Consensus 419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 419 IFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 578999999877777766555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=115.27 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc-CcchHHHHHHH--HHHHHHHHHHHHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF-FTTYRIYVISA--AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~-~Grk~~l~~~~--~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
.|++..+++++.+.+.++..++.+++|+++||+ +++|+...++. ++.+++.++++.+.
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------------- 331 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG------------------- 331 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 367889999999999999999999999999983 24454444433 33334444444432
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cc
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GW 156 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw 156 (517)
+.+.+++.+++.|++.++..++..+++.|.+|+++ +++.+++++...++|..+||.++|++.+.. +|
T Consensus 332 ------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~ 399 (455)
T TIGR00892 332 ------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399 (455)
T ss_pred ------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence 45678889999999999999999999999999877 999999999999999999999999998877 59
Q ss_pred hhhHHHHHHHHHHHHHH
Q 010145 157 QWGFGISTATILLSIPI 173 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~ 173 (517)
+..|++.++..+++.+.
T Consensus 400 ~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 400 KYIFYASGSIVVSAGLF 416 (455)
T ss_pred chHHHHhhHHHHHHHHH
Confidence 99999888766655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-09 Score=109.31 Aligned_cols=142 Identities=18% Similarity=0.061 Sum_probs=114.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.....++.++.....
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------- 306 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAP----------------------- 306 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcC-----------------------
Confidence 67888999999999999999999999999995 999999987776666655555432
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-CchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~f 160 (517)
+...+.+.-++.|++.+...+...++..|.+|+++ |++..++.+...++|..+||.++|++.+.. +|...+
T Consensus 307 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~ 378 (406)
T PRK11551 307 --SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVI 378 (406)
T ss_pred --cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHH
Confidence 33445666778888888888999999999999887 999999999999999999999999997754 566667
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++..+..+++.+..+
T Consensus 379 ~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 379 GASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555544433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-09 Score=106.80 Aligned_cols=145 Identities=12% Similarity=0.010 Sum_probs=115.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.|..+++++.+.+.++..++.++.|+++||+ |||+. ..+..+..++..+..... +
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l~~~~--~------------------- 292 (390)
T PRK03545 236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLLLPAA--N------------------- 292 (390)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHHHHHh--c-------------------
Confidence 367888999999999999999999999999995 98765 445555555443332221 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+++..++.|++.+...+...+.+.|..| ++ |+++++++....++|..+||.++|++.+.++++..|
T Consensus 293 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~ 362 (390)
T PRK03545 293 ---SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIG 362 (390)
T ss_pred ---hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHH
Confidence 45567788889999998888888888888765 34 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 010145 161 GISTATILLSIPIFLLGS 178 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~ 178 (517)
++.++..+++++......
T Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 363 YVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 988887777776655443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-08 Score=106.13 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=133.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc-cc--------
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCV-LE-------- 71 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~-~~-------- 71 (517)
++++.++.|++.+.|.++..+...+..|.+-|. =|-|.+-+|.+++++|+++.++-+.+- ..|. +-
T Consensus 127 F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~----~~y~~~~~~~~~~~~ 201 (735)
T KOG3626|consen 127 FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFS----GPYEYELEVIKQSVE 201 (735)
T ss_pred cCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhc----Ccchhhhhhhhcccc
Confidence 467889999999999999999999999999995 889999999999999999999742211 1111 00
Q ss_pred -------------------cCCCcc---cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHH
Q 010145 72 -------------------DGIASC---REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 129 (517)
Q Consensus 72 -------------------~~~~~~---~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~ 129 (517)
++..++ ++.+..-+.+++++.++.|+|...+.+...+|+=|..+.++ -...+
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYl 275 (735)
T KOG3626|consen 202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYL 275 (735)
T ss_pred CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHH
Confidence 000111 23333345688899999999999999999999999888776 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc------------------c-CchhhHHHHHHHHHHHHHHHHhcCCcccc
Q 010145 130 NYYVFCLSCGALIAVTFVVWIEDN------------------K-GWQWGFGISTATILLSIPIFLLGSPFYRN 183 (517)
Q Consensus 130 ~~~~~~~~lG~~ig~~i~g~l~~~------------------~-gw~~~f~i~~~~~~~~l~~~~~~~~~~~~ 183 (517)
++.+.+..+|+++|.++|++.... . .|+..|++.+.+.++..+.+++..+..+.
T Consensus 276 gi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 276 GILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 999999999999999999887421 1 37888888888777766666666555444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-09 Score=111.74 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=106.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+++++.+.+.++..++.+++|+++||+ |||+++..+..+..++.++.....+ +
T Consensus 306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-~------------------- 364 (496)
T PRK03893 306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-A------------------- 364 (496)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc-c-------------------
Confidence 367889999999999999999999999999995 9999999887777666554443211 0
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+.+..++.+....+..+..+.++.|.+|+++ |++.+++++...++|..+||.++|++.+.+||+..+
T Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 365 ---NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred ---HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 33344445555444444456778889999999877 999999999999999999999999999999999887
Q ss_pred HHHHH
Q 010145 161 GISTA 165 (517)
Q Consensus 161 ~i~~~ 165 (517)
.+...
T Consensus 436 ~~~~~ 440 (496)
T PRK03893 436 ASLSF 440 (496)
T ss_pred HHHHH
Confidence 65443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=108.43 Aligned_cols=155 Identities=14% Similarity=0.033 Sum_probs=113.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|++..++++....+.++..++.+++|+++||+ |||+.+.+++.+..++.++.++...... ...++
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 379 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--------------TGSSK 379 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--------------CCccc
Confidence 66777888999999999999999999999995 9999999998888888777764211000 00000
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
..+...+....+..+.......+....++.|.+|+++ |+...++.....++|.+++|.+.+++.+..+|++.|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~ 453 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence 0122223333333333333345777788899999877 9999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010145 162 ISTATILLSIPIFLLG 177 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~ 177 (517)
+.++..+++.+..++.
T Consensus 454 ~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 454 FFGGLNVLGLIFVYFF 469 (481)
T ss_pred hHHHHHHHHHHHHhee
Confidence 8777766665554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.4e-09 Score=106.83 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=115.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.|.++++.+.+.+.++..++.++.|++.||+ |||+.+..+..+..++.++....+.
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~~~~~~~~--------------------- 292 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFCGFIWLPL--------------------- 292 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHccc---------------------
Confidence 367889999999999999999999999999995 9999999998888777665543221
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+.... .-++.|++.+...|.......|.+++++ +|++.++..+...+++..++|.+.|++.+..| |+..
T Consensus 293 ---~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~ 362 (393)
T PRK09705 293 ---QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMD 362 (393)
T ss_pred ---hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 11122 2246788888888988878888886433 28999999999999999999999999998775 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 010145 160 FGISTATILLSIPIFLLGSP 179 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~ 179 (517)
|.+.....++.++......+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 363 WAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88877766666555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=109.44 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=114.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+++++.+.+.++..++.+++|+++||+ |||+.+.....+..++..+....+
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~~---------------------- 292 (394)
T PRK03699 236 FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNTD---------------------- 292 (394)
T ss_pred cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 478889999999999999999999999999995 999999988777666655554432
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+...+.+..++.|++.+...+...++..|..|.+ +++..++.....++|..++|.+.|++.+..||+..|
T Consensus 293 ---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~ 362 (394)
T PRK03699 293 ---DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAAL 362 (394)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhh
Confidence 2334566777889988888888888888876532 456678888889999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010145 161 GISTATILLSIPIFLL 176 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~ 176 (517)
++..+..+++++....
T Consensus 363 ~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 363 LTANGLYAVVFVMCIL 378 (394)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9777766666544333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=108.21 Aligned_cols=137 Identities=15% Similarity=0.067 Sum_probs=107.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHH-H-HHhhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL-L-TVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l-~-~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
+|.+..+.+++.+.+.++..++.+++|+++||+ |||+.+..+..+..+..++ . .... .
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------- 309 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMALLD--S----------------- 309 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------
Confidence 367888899999999999999999999999995 9999888666655544422 2 2211 1
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhccccC-c
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY-VFCLSCGALIAVTFVVWIEDNKG-W 156 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~ig~~i~g~l~~~~g-w 156 (517)
.+.+.++...++.|++.+...+...+++.|.+|+++ |++++++. .....+|..++|.++|++.+..| |
T Consensus 310 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~ 379 (394)
T TIGR00883 310 ----GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDW 379 (394)
T ss_pred ----CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcc
Confidence 034566778888999999999999999999999877 88888874 45566899999999999998888 8
Q ss_pred hhhHHHHHHHH
Q 010145 157 QWGFGISTATI 167 (517)
Q Consensus 157 ~~~f~i~~~~~ 167 (517)
+..++......
T Consensus 380 ~~~~~~~~~~~ 390 (394)
T TIGR00883 380 YAIGYYLAALA 390 (394)
T ss_pred hhHHHHHHHHH
Confidence 88777655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=105.45 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=112.3
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcc-hHHHHHHHHHHHHHHHHH-HHhhhccCCCCCCcccccCCCcccC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT-YRIYVISAAIEFMGLLLL-TVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Gr-k~~l~~~~~l~~ig~~l~-~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+.+.+..||++++..+++.++.++.|+...|. |+ |+-++.|.++.++|.++- +++. .+.
T Consensus 67 ~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~-~~~----------------- 127 (488)
T KOG2325|consen 67 TATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAY-VPN----------------- 127 (488)
T ss_pred CCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHh-ccc-----------------
Confidence 45667789999999999999999999999995 75 888888999999999997 5543 221
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----c--
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----N-- 153 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~----~-- 153 (517)
. ..+.++++|++.|+|.|. ....-.|++|....++ |.++++....+..+|.++||.+...+.. .
T Consensus 128 --~-~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~ 197 (488)
T KOG2325|consen 128 --G-VKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFM 197 (488)
T ss_pred --c-hHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceE
Confidence 1 678899999999999887 5677899999877777 8899888888777888888776644431 1
Q ss_pred ----c---CchhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 154 ----K---GWQWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 154 ----~---gw~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
. -+..+=|+..+..++.+++..+..++
T Consensus 198 i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 198 ILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred EcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 1 12345556655555555555544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=105.82 Aligned_cols=148 Identities=9% Similarity=-0.039 Sum_probs=107.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------------- 360 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------------- 360 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------------------
Confidence 45555566666777888889999999999995 999999999999999988876542111
Q ss_pred CchhHHHHHHHHHHHHhccc-ccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hcccc
Q 010145 82 GGKAVMLFAGLYIVALGVGG-IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW------IEDNK 154 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~-~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~------l~~~~ 154 (517)
. .......+.++.+.+.+. ..|....++.|.+|+++ |+.++++.+...++|..+++.+.+. +.+.+
T Consensus 361 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 361 A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 0 111233344444444443 34778899999999877 9999999999999999988766554 44578
Q ss_pred CchhhHHHHHHHHHHHHHHHHhc
Q 010145 155 GWQWGFGISTATILLSIPIFLLG 177 (517)
Q Consensus 155 gw~~~f~i~~~~~~~~l~~~~~~ 177 (517)
+|++.|++.++..+++.+..++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhc
Confidence 89999988776666555544433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=104.37 Aligned_cols=139 Identities=12% Similarity=0.000 Sum_probs=119.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+.+.+...++..++.++.|++.||+ |+|+.+.++.+...++.++.+.++
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~---------------------- 291 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAIE---------------------- 291 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhHh----------------------
Confidence 478889999999999999999999999999995 999999999999999999888764
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+.+.+++.+++.|+..|...+....++.+. |+++ |+...+++. ....+|..+||.++|++.+.+|+ ..
T Consensus 292 ---~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~ 360 (382)
T TIGR00902 292 ---AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GT 360 (382)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence 566788899999999999999999999987 7665 788888875 46789999999999999998886 66
Q ss_pred HHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPI 173 (517)
Q Consensus 160 f~i~~~~~~~~l~~ 173 (517)
|++.+...++++++
T Consensus 361 ~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 361 FVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666655555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.9e-09 Score=106.88 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=107.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|..+++++.+.+.++..++.++.|+++||+ |||+.+..+..+..+......... .
T Consensus 269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--~------------------- 326 (405)
T TIGR00891 269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG--A------------------- 326 (405)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC--C-------------------
Confidence 367889999999999999999999999999995 999999988776543332221111 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+.+.+.++.++.++..+...+..++++.|.+|+++ |++++++.+...++|..++|.++|++.+..| |+..
T Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 327 ---NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred ---chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 34456677778888888888889999999999887 9999999999999999999999999999888 8777
Q ss_pred HHH
Q 010145 160 FGI 162 (517)
Q Consensus 160 f~i 162 (517)
|..
T Consensus 398 ~~~ 400 (405)
T TIGR00891 398 LAS 400 (405)
T ss_pred HHh
Confidence 664
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-07 Score=90.22 Aligned_cols=110 Identities=15% Similarity=-0.004 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHH-HHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHH
Q 010145 9 ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE-FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVM 87 (517)
Q Consensus 9 ~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~-~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (517)
+...+.-.+..++..|+-|.++|+. |+||-........ .+..+++..+++ +.++..
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~----------------------~s~~~~ 117 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP----------------------GSYLLL 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC----------------------CchHHH
Confidence 4555666677778889999999995 8777666544444 445555666532 115666
Q ss_pred HHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010145 88 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 147 (517)
Q Consensus 88 l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~ 147 (517)
.++...+..++.........++..|..++++ .++.-+.-+....+|..+.-..+
T Consensus 118 ~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~~ 171 (438)
T COG2270 118 LLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIFV 171 (438)
T ss_pred HHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHHH
Confidence 7777788999999999999999999999876 66666666667777777655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=98.81 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhccc--Cc--chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAF--FT--TYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~--~G--rk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+|.|+++.+...+.-.+.-.+- ++-|.++|.+ +| ||.-++++.++..++.+.++..+...
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~--------------- 83 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE--------------- 83 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc---------------
Confidence 4678888777777766666655 7789999986 34 44555556666655555555543211
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+.....+..++..+|......+..+++.|...++. . .|+...+..+....+|.+++..++|++.+..++
T Consensus 84 ------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~---~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~ 153 (433)
T PF03092_consen 84 ------SSAAIAVVLLFLASFGYAFADVAADALVVELARREP-E---SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP 153 (433)
T ss_pred ------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-c---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 144456677788999999999999999999886553 1 188889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q 010145 157 QWGFGISTATILLSIPIFLLG 177 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~ 177 (517)
+..|.+...+..+..+..++.
T Consensus 154 ~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 154 QGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred eEEehHHHHHHHHHHHHHHHh
Confidence 999998877766554443333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-08 Score=103.27 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=105.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+.++...+...+.....++.++.|+++||+ ||||++..+.++..++.+.........
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 340 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMALEAQ-------------------- 340 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHcC--------------------
Confidence 55565555555566667778889999999995 999999988776655544333321001
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhcccc--Cchh
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFC-LSCGALIAVTFVVWIEDNK--GWQW 158 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~ig~~i~g~l~~~~--gw~~ 158 (517)
.....+++..++.+++.+...+...+++.|.+|.+. |+.+.++.+.. ..+|..++|.+++++.+.. +|+.
T Consensus 341 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~ 413 (438)
T PRK09952 341 -SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHS 413 (438)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 023344556677788888888999999999999876 88888886655 4489999999999997633 5888
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 010145 159 GFGISTATILLSIPIFLLG 177 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~~ 177 (517)
++.+..+..+++.+..+..
T Consensus 414 ~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 414 VAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 8887766666666554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=102.31 Aligned_cols=148 Identities=11% Similarity=0.042 Sum_probs=103.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRI-YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~-l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..+++++.+.+.++..++.+++|+++||+ |||+. +........++.++.++......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 307 (399)
T TIGR00893 246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMFATN----------------- 307 (399)
T ss_pred hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 367788899999999999999999999999995 99962 11111122222111111100000
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQW 158 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~ 158 (517)
........+....+.+.+.+ ..+....++.|.+|+++ |++.+++.....++|..++|.+.|++.+..+ |+.
T Consensus 308 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 379 (399)
T TIGR00893 308 -YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG 379 (399)
T ss_pred -cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence 00022233333334444444 78999999999999887 9999999999999999999999999999888 999
Q ss_pred hHHHHHHHHHHHHHHH
Q 010145 159 GFGISTATILLSIPIF 174 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~ 174 (517)
.|.+.++..+++.+..
T Consensus 380 ~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 380 ALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998777766655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=101.41 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=108.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~-~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+. .+.....++.+.+.......
T Consensus 252 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~------------------ 312 (402)
T TIGR00897 252 LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYYIPQHF------------------ 312 (402)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHcc------------------
Confidence 367888999999999999999999999999995 9998764 33334444443333321100
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
..+.+.+++..++.|++.+...|. .....|. +|++ |++.+++.+...++|..++|.++|++.+..||+..
T Consensus 313 --~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~------~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~ 382 (402)
T TIGR00897 313 --GHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKH------KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGV 382 (402)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Ccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 013556677888888888876554 4556665 4445 99999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPIFL 175 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~ 175 (517)
|++..+..+++.+...
T Consensus 383 ~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 383 VWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988777666554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=104.03 Aligned_cols=149 Identities=13% Similarity=0.191 Sum_probs=112.5
Q ss_pred CCCCchhhHHHHHHH-HHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNF-MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV-QAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f-~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~-a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
+|+|.++.+++...+ .++..++.+++|+++||+ ||||.+.++.++..++.++... +...+
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~~~~----------------- 314 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSITDK----------------- 314 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------
Confidence 478999999998544 578899999999999995 9999888777666665443322 11001
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~ 158 (517)
+...+.+.-++..+..|...++..++..+..+++. ++..+++.+...++|..+++.+.|++.+..||+.
T Consensus 315 -----~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~ 383 (491)
T PRK11010 315 -----NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPT 383 (491)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 23344555666666666666777888888888776 7788899999999999988889999999899999
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q 010145 159 GFGISTATILLSIPIFLLGS 178 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~~~ 178 (517)
.|.+..+..+++++.....+
T Consensus 384 ~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99988888887776665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=95.19 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=119.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+|.++.+|+.-.|.++..++.+++|+++|| +.|+++.....+..+..+.+.+..+
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~---------------------- 298 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGA---------------------- 298 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcc----------------------
Confidence 6889999999999999999999999999999 8999999999999988888777642
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+.+..++.-++-|++.+........-+++ ..|++ ++.+.+++..+.|+|..+|.++||.+.+.+|++...+
T Consensus 299 --~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~ 369 (394)
T COG2814 299 --SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW 369 (394)
T ss_pred --hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 34556666666666666655555555555 22344 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 010145 162 ISTATILLSIPIFLLGSP 179 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~ 179 (517)
++++..+++++..+...+
T Consensus 370 ~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 370 VGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988888777665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=99.69 Aligned_cols=124 Identities=12% Similarity=0.113 Sum_probs=108.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+.+++.++.....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 299 (365)
T TIGR00900 242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAILVVGLTPP--------------------- 299 (365)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHhhch---------------------
Confidence 367888999999999999999999999999995 9999999888887777777666531
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g 155 (517)
+.+.+++..++.|++.+...+....++.|.+|+++ |++..++.+...++|..++|.++|++.+.+|
T Consensus 300 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 300 ---NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 25577888999999999999999999999999877 9999999999999999999999999987543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-08 Score=101.54 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-cchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
+|+|..++++..+.+.++..++.+++|+++||+. ++|+.. ........++......... .
T Consensus 274 ~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 335 (434)
T PRK11663 274 LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-A----------------- 335 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc-c-----------------
Confidence 3788889999999999999999999999999942 222222 2211111111111111110 0
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~ 158 (517)
+.....+..+..|++..........+++|.+|+++ |+...++.+...++|..++|.+.|++.+..||+.
T Consensus 336 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 404 (434)
T PRK11663 336 -----SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTG 404 (434)
T ss_pred -----cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHH
Confidence 22223333333444322222233456788888766 9999999999999999999999999999899999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010145 159 GFGISTATILLSIPIFL 175 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~ 175 (517)
.|.+.+...+++.+..+
T Consensus 405 ~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 405 FFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99977776655544443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=100.34 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=124.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcch--HHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY--RIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk--~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
+|+|..+...+.-.-++.+.+++++.|++.|| +|.| +++..++.++.+-.+...+.-. +...+
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~-~~~~g------------- 376 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFW-PSFFG------------- 376 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhh-hcccC-------------
Confidence 57889998888889999999999999999999 5999 9999988888665554433100 00000
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-ch
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~ 157 (517)
..+.+.+++.=++.|+..|..++..-++.+|..|+++ .+.+|+++....-..+.+||++.|.+.+..+ -|
T Consensus 377 ---~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r 447 (477)
T PF11700_consen 377 ---LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQR 447 (477)
T ss_pred ---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 1156678888889999999999999999999999987 8999999999999999999999999988665 88
Q ss_pred hhHHHHHHHHHHHHHHHHhc
Q 010145 158 WGFGISTATILLSIPIFLLG 177 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~ 177 (517)
+.+..-.++.++++++++..
T Consensus 448 ~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 99887777777777776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=97.46 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=111.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.+..+.+.+.+.-.++..+..++.|++.||+ |+|+.+..+..+.+++.++.+.++
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~---------------------- 291 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMGSTT---------------------- 291 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhh----------------------
Confidence 367888899999988888888999999999995 999999999999888877776653
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+.+.+++..++.|++.+...+....++.+. ++++ +++..+... ...++|..+||.++|++.+.+++ ..
T Consensus 292 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~ 360 (382)
T PRK11128 292 ---ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV 360 (382)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence 456788899999999999999999888886 4444 667777765 55678889999999999998887 46
Q ss_pred HHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPI 173 (517)
Q Consensus 160 f~i~~~~~~~~l~~ 173 (517)
|++.+...++++++
T Consensus 361 ~~~~~~~~~~~~~~ 374 (382)
T PRK11128 361 FWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=95.49 Aligned_cols=142 Identities=14% Similarity=0.007 Sum_probs=111.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++.+.++......++..++.++.|+++||+ |+|+.+.++.++..+|.++........
T Consensus 246 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------- 305 (406)
T PRK15402 246 EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS------------------- 305 (406)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------
Confidence 367888888888888888899999999999995 999999999998888888877653111
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
..+...++++.++.|+|.+...+.......+. ++++ |++..+..+....+|..+|+.+++++.+..++....
T Consensus 306 -~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 377 (406)
T PRK15402 306 -SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFN 377 (406)
T ss_pred -cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 01455677888999999998888776665443 3344 999999999999999999999999998877876666
Q ss_pred HHHHHHHHHH
Q 010145 161 GISTATILLS 170 (517)
Q Consensus 161 ~i~~~~~~~~ 170 (517)
+.+....++.
T Consensus 378 ~~~~~~~~~~ 387 (406)
T PRK15402 378 LFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHH
Confidence 6555444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=98.26 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=104.3
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+..+.+++.+...++..++.++.|+++||+ |||+++.++..+.+++.++..+..+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 309 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAGS------------------------ 309 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcch------------------------
Confidence 345677888888999999999999999995 9999999999988888777665421
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ-LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~-~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
+.+.+++..++.|++.+...+...++++|..|.++. ...++++..++++....++|..+++.+.|++.+..||
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345667788889999999999999999999874431 1122478999999999999999999999999776666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=99.97 Aligned_cols=127 Identities=14% Similarity=0.054 Sum_probs=104.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++.+++++...+.++..++.++.|++.||+ |||+++..+..+..++.++...... .
T Consensus 292 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~-~------------------- 350 (471)
T PRK10504 292 LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVAL-L------------------- 350 (471)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhccc-c-------------------
Confidence 367788899999889898888889999999995 9999999999988888777665321 0
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.....+.+..++.|++.+...+....+..+..|+++ |+..+++.+...++|..+|+.++|.+.+..++
T Consensus 351 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 351 --GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 023344566778899999999999999999999877 99999999999999999999999888655544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=101.04 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=98.0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC--cchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFF--TTYRIY-VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~--Grk~~l-~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
|++..+++++...+.++..++.+++|+++|| + |||+.. .....+..++.++..+... .
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~~-~----------------- 345 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNPA-G----------------- 345 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhcc-c-----------------
Confidence 6778889999999999999999999999999 5 444432 2222333333332222110 0
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhccccCch
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGAL-IAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~-ig~~i~g~l~~~~gw~ 157 (517)
+....++..++.|.+.....+....+..|.+|+++ |++..++.+...++|.. ++|.+.|++.+..||+
T Consensus 346 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~ 414 (452)
T PRK11273 346 -----NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 414 (452)
T ss_pred -----ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcch
Confidence 22334445555555433323333456779999877 99999999998899865 4799999999989999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010145 158 WGFGISTATILLSIPIFL 175 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~ 175 (517)
..|++..+..+++++...
T Consensus 415 ~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 415 GGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987776666655433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=98.36 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=108.9
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+..+.+.+.+...+...++.+..|++.|| +|||+.+.++..+.+++..+...+.
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~------------------------- 305 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT------------------------- 305 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC-------------------------
Confidence 44566788888888888899999999999 5999999999999998887766653
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhccccCchhhHHH
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 162 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i 162 (517)
+.+.+++.+++.|++.+........++.+..+++. ++...+. +....++|..+++.++|++.+..||+..|.+
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~ 379 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV 379 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 34567788999999887766666667777766554 6665655 5678999999999999999998999999998
Q ss_pred HHHHHHHHHH
Q 010145 163 STATILLSIP 172 (517)
Q Consensus 163 ~~~~~~~~l~ 172 (517)
.++..++..+
T Consensus 380 ~~~~~~i~~~ 389 (396)
T TIGR00882 380 LGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHH
Confidence 7766554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-07 Score=96.50 Aligned_cols=147 Identities=16% Similarity=0.058 Sum_probs=108.7
Q ss_pred CCCCchhhHHHHHHHHH-HHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~-~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
.|+|.++.+++...+.. ...++.+++|++.||+ |+||.+.++..+..+..++.........
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------- 299 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAAFWL----------------- 299 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHccc-----------------
Confidence 37889999999888764 6667789999999995 9999999887776444333222111000
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
.......+...++.+++.|...+...+...+..++++ .+++.++..+...++|..+||.++|++.+..||+..
T Consensus 300 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~ 372 (390)
T TIGR02718 300 --APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGG 372 (390)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 0023344455556677788888888888888777632 289999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIP 172 (517)
Q Consensus 160 f~i~~~~~~~~l~ 172 (517)
|.+..+..+++++
T Consensus 373 f~~~~~~~l~a~~ 385 (390)
T TIGR02718 373 FLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9987776655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=97.99 Aligned_cols=140 Identities=11% Similarity=-0.050 Sum_probs=110.7
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+....+++.+.+........++.|++.||+ |+|+.+..++.+..++.++...+.+
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~------------------------ 296 (395)
T PRK10054 242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFSGN------------------------ 296 (395)
T ss_pred HHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHcch------------------------
Confidence 344556777777777677778899999995 9999999999888888877765421
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHH
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 163 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~ 163 (517)
+.+.+.++.++.|+|.+...|...+++.+..|++. |++.++... ...+|..+||.++|++.+..|....|++-
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 34566778899999999999999999999998776 888888654 56689999999999999999988888876
Q ss_pred HHHHHHHHHHHH
Q 010145 164 TATILLSIPIFL 175 (517)
Q Consensus 164 ~~~~~~~l~~~~ 175 (517)
.+...+++++..
T Consensus 370 ~~~~~~~~~~~~ 381 (395)
T PRK10054 370 ALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=97.61 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=93.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHH-HHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL-LTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|++..+++++...+.++..++.+++|+++||+ ||||.+..+..+..+..++ .......+
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 329 (434)
T PRK15075 269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVAAP------------------ 329 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHcCC------------------
Confidence 377888889998889999999999999999995 9999988765554332221 11111001
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCch
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~ 157 (517)
+.....+..++.+++.+...+....++.|.+|++. |+..+++.+...+. +..++|.+.|++.+..|++
T Consensus 330 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 330 ----SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred ----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 22334455566677777777777789999999887 99999986655554 5777999999998887864
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-07 Score=96.64 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=97.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+.++.+.+.+.+.++..++.+++|+++||+ |||+.+..+.++..++.++...... +
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------- 319 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-D-------------------- 319 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-c--------------------
Confidence 56778888888999999999999999999995 9999999888877666555443211 0
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
....+.+..+..+.+..+..+..+.++.|.+|+++ |++++++.+...++|..++|.+.|++.+..|+....+
T Consensus 320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 320 --NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred --cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 11122222222333333445667788899999877 9999999999999999999999999998888765444
Q ss_pred H
Q 010145 162 I 162 (517)
Q Consensus 162 i 162 (517)
+
T Consensus 392 ~ 392 (426)
T PRK12307 392 F 392 (426)
T ss_pred H
Confidence 3
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=95.10 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=100.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|+|+++.+++.+.+.++..++.++.|++.||+ |+|+.+..+..+..++.++.....+
T Consensus 230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~~--------------------- 287 (382)
T PRK10091 230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFGG--------------------- 287 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 378889999999999999999999999999995 9999999999888888766544221
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-~~gw~~~ 159 (517)
+.+..++..++.++|.+...+.......+..++++ .++... .....++|..+||.++|++.+ ..+|+..
T Consensus 288 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~ 357 (382)
T PRK10091 288 ---MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-----LLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYV 357 (382)
T ss_pred ---hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-----HHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchH
Confidence 23345555666666665555444433333333222 144432 355678999999999999887 4789999
Q ss_pred HHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPI 173 (517)
Q Consensus 160 f~i~~~~~~~~l~~ 173 (517)
|.+..+..++....
T Consensus 358 ~~~~~~~~~~~~~~ 371 (382)
T PRK10091 358 ALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=93.43 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=105.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++++++...+.|..+..++.++++++.|| +|+||.+.++..+.+++.++....+
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~---------------------- 229 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH---------------------- 229 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 37889999999999999999999999999999 5999999999888888776555532
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+. ....+-++.|++.+...|+..+...+.+|++. .++.. +. .+..+|.+++|.+.|++.|..|.+..|
T Consensus 230 ---~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~asa--i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 230 ---GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGSG--IL-CLAIVGGAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred ---CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHH--HH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence 11 12235558999999999999999999888643 13433 33 566799999999999999989999999
Q ss_pred HHHHHH
Q 010145 161 GISTAT 166 (517)
Q Consensus 161 ~i~~~~ 166 (517)
++..+.
T Consensus 298 ~v~~~~ 303 (310)
T TIGR01272 298 ALPVPC 303 (310)
T ss_pred HHHHHH
Confidence 865544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=98.27 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=126.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+....|++.+++.+|..++.++.+++.+| +++++.+..+.++++++.+..+++.
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~---------------------- 305 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP---------------------- 305 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch----------------------
Confidence 46778889999999999999999999999999 5999999999999999888888875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+...++.++.|++...........+.+..|++. |||+++++....+.+..+|.++.|++.+.+|-+..+
T Consensus 306 ---~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al 376 (524)
T PF05977_consen 306 ---SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTAL 376 (524)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45677888899999999999999999999999887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
.++++..+++.++..
T Consensus 377 ~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 377 LIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988776655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-07 Score=89.00 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=104.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|++..|.+.+..+=...+.+..++.|.++||+ ||||.-+...++.++++++--..
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~~------------------------ 119 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHSS------------------------ 119 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 67788888888887778888889999999995 99999999888888888643332
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHH-HHHHHHHHHHHhhccccCc--hh
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLS-CGALIAVTFVVWIEDNKGW--QW 158 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~-lG~~ig~~i~g~l~~~~gw--~~ 158 (517)
+++.++++|++.|+++.....+-.+.......+++- .+...+.-|+......| +-++++..++-++.+..+. ..
T Consensus 120 --~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 120 --NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 677999999999999999999888865443332221 11124444444442223 3344455555566665544 89
Q ss_pred hHHHHHHHHHHHHHHHHhcCCc
Q 010145 159 GFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
+|..+.++.+++.+......++
T Consensus 197 PF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred hHHHHHHHHHHHHHHHHhcccc
Confidence 9999888877766655444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=95.07 Aligned_cols=146 Identities=20% Similarity=0.237 Sum_probs=113.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-cchHHHHHH-HHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIYVIS-AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-Grk~~l~~~-~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
|+|..+++|.++.|-.+...++++.||++||++ |||...-+. ++..+++-+..-.+++
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~-------------------- 343 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN-------------------- 343 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC--------------------
Confidence 789999999999999999999999999999999 888766543 3333333333333321
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCchh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~~ 158 (517)
.++.+..+..++.|+-.-+-+-.+-....|..|++- .|.+.+....+..+ |+..+....|++.|.+||..
T Consensus 344 ---~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g 414 (448)
T COG2271 344 ---GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDG 414 (448)
T ss_pred ---ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcc
Confidence 167788888888998888877777777888888665 88898988888888 99999999999999899999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 010145 159 GFGISTATILLSIPIFLL 176 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~ 176 (517)
.|.+-.+..+++.+.+..
T Consensus 415 ~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 415 GFIVLSIAALLAILLLLP 432 (448)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 998666655555554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-05 Score=79.68 Aligned_cols=341 Identities=11% Similarity=0.033 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHH
Q 010145 12 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG 91 (517)
Q Consensus 12 ~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (517)
.++-.....+.+++++-+.|+ +|.|..+.++...+..--+..-.- |-+.++++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------------N~y~~yfs 108 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------------NSYYLYFS 108 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------------chHHHHHH
Confidence 344455566778889999999 599999999888777643333221 45678999
Q ss_pred HHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccCch-hhH--
Q 010145 92 LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED--------NKGWQ-WGF-- 160 (517)
Q Consensus 92 r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~--------~~gw~-~~f-- 160 (517)
=.+.|+|.+..+..--.|.++..++++ +++-.++.....+.+.++|..+-..+.. ..+.+ ..+
T Consensus 109 sallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (461)
T KOG3098|consen 109 SALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEV 182 (461)
T ss_pred HHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcch
Confidence 999999999999999999999888776 8899999888888888887654433211 01121 111
Q ss_pred -HHHHHHHHHHHHHHH--hcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 161 -GISTATILLSIPIFL--LGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 161 -~i~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
.+......+..+..- ..........|.++... + .
T Consensus 183 ~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~----------------------------------~---------~ 219 (461)
T KOG3098|consen 183 LFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVN----------------------------------C---------K 219 (461)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhheeecCccchhh----------------------------------h---------h
Confidence 111111000000000 00000000001000000 0 0
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
+. . + ..+.+..+. .-+...+ ++++...+.++..-+.-..+...+..-+...... .
T Consensus 220 ~~-~--~----~~~~~~l~~----------~~~l~~~-~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~-------~ 274 (461)
T KOG3098|consen 220 SS-S--E----TSFSELLKL----------TFKLLKT-PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKL-------G 274 (461)
T ss_pred hh-c--c----ccHHHHHHH----------HHHHhcC-HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc-------c
Confidence 00 0 0 011111110 0011122 2344444554444333333322222111111011 1
Q ss_pred eCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 010145 318 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 397 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (517)
.+...+..++.+...+...+.+.....+.||.. + +.....+.++.++-.+..++.-... +.+......|+..
T Consensus 275 ~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~---fg~~~~~~~~~~~~~~~~~li~l~~----p~dap~~~t~~~~ 346 (461)
T KOG3098|consen 275 SNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR-G---FGRKPTVLIGIIIHLIGFLLIHLSF----PNDAPLRPTDSPP 346 (461)
T ss_pred CcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-h---cccCcchhHHHHHHHHHHHHHhccc----cccCCCCCCcccc
Confidence 123345666666666666666666666665532 2 3555556666666555554433321 0000000001111
Q ss_pred -CcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 398 -PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 462 (517)
Q Consensus 398 -~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~ 462 (517)
..+.......++..++|++++..+...+.++....| +.|..+.++.-+...+++.++....+..
T Consensus 347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 111224466777789999999999999999998885 6688999999998888888776665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=98.89 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchH
Q 010145 281 IFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360 (517)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~ 360 (517)
...+.+.+++.++-...+.+.+.....+.+... -..+.++..-.+...++.|+.+.+.++.=||+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~----s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~----------- 99 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISD----SELGLLQTVFIVVFMIASPLFGYLADRYNRKR----------- 99 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc----hhccchhHHHHHHHHHHHHHHHHHHhhcCcce-----------
Confidence 445566677777766666665544444444331 12345666666777778888888776555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHH
Q 010145 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 440 (517)
Q Consensus 361 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~ 440 (517)
.+.+|..+..++++..++. -.+|.++++=.+.|+||....|...+++.+.+|...|+++
T Consensus 100 v~~vG~~iW~~Av~~~~fs---------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~ 158 (493)
T KOG1330|consen 100 VIAVGIFIWTLAVFASGFS---------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRV 158 (493)
T ss_pred EEeeHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHH
Confidence 4888999999998888775 2678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 441 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 441 ~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
.++++++...|+.+|..+...+.+.+ .+|++.|+..++++++..++..++.++.++
T Consensus 159 ~~ify~~ipvGsglG~vvgs~va~~~----------------~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 159 LGIFYFAIPVGSGLGYVVGSVVASLT----------------FWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred HHHhhhhcccccceeEEeeeeeccCc----------------cceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999999999999888877765321 347899999999999999888887776664
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-07 Score=92.21 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=102.1
Q ss_pred CCCCchhhHHHHHHHH-HHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFM-GTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~-~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|++.++.+++.+... ++..++.+++|++.||+ ||||.+.++..+..+..+........+.
T Consensus 240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~----------------- 301 (402)
T PRK11902 240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK----------------- 301 (402)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 4778888999887765 45788999999999995 9999998888777766544432111010
Q ss_pred CCCchhHHHHHHH----HHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 010145 80 DEGGKAVMLFAGL----YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155 (517)
Q Consensus 80 ~~~~~~~~l~~~r----~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g 155 (517)
+.+.+++.- +..|++.+...+....++.+.+|+++ + +.+....++|..+++.++|++.+.+|
T Consensus 302 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 302 ----HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 233344433 45677777888888888888877544 3 34444456777766778999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHh
Q 010145 156 WQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 156 w~~~f~i~~~~~~~~l~~~~~ 176 (517)
|+..|.+...+.+++++..+.
T Consensus 368 ~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877766555433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.1e-07 Score=93.16 Aligned_cols=147 Identities=11% Similarity=-0.029 Sum_probs=93.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV-QAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~-a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.+..+++++.+...+...++.++.|+++||+ |||+.+.++..+..+....... .....
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 334 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQNVS------------------ 334 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHcCC------------------
Confidence 367778888888888888888899999999994 9999988776654443322211 11000
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCchh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~~ 158 (517)
+....+..-.+.+++.+...+....+..|.+|++. |+.+.++.+...++ .....|.+++++....+|..
T Consensus 335 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~ 404 (432)
T PRK10406 335 ----SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSAEYVALSLKSIGMETA 404 (432)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcH
Confidence 11111221222333334444567788999999887 99999999877665 23347888887754333666
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 010145 159 GFGISTATILLSIPIFLL 176 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~ 176 (517)
.+++..+..+++++..++
T Consensus 405 ~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 405 FFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555555444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=93.76 Aligned_cols=118 Identities=18% Similarity=0.095 Sum_probs=95.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+++++.+.+.++..++.+++|+++||+ |||+.+... .+..+...++.... .
T Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~--~------------------- 336 (398)
T TIGR00895 280 LGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLL-LLGAVFAVLVGSTL--F------------------- 336 (398)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHH-HHHHHHHHHHHHHh--h-------------------
Confidence 367888999999999999999999999999995 999555443 33333333333211 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 150 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l 150 (517)
+...+++..++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..+||.++|++
T Consensus 337 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 337 ---SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 34467778889999999999999999999999877 99999999999999999999999876
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-07 Score=93.84 Aligned_cols=140 Identities=13% Similarity=0.083 Sum_probs=106.1
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
++.+.+++.+...++...+....+++.||.++.++.+..+..+.+++.++.+.++
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~------------------------- 295 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS------------------------- 295 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-------------------------
Confidence 5677788888777766655555555555435778888888888888877776653
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc---C-chhh
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---G-WQWG 159 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~---g-w~~~ 159 (517)
+.+.+.+..++.++|.+...|....++.|..|+++ |++.+++.....++|..+||.++|++.+.. + ...+
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~ 369 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELP 369 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchH
Confidence 34456677788999999999999999999999887 999999999999999999999999997753 3 3566
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 160 FGISTATILLSIPIF 174 (517)
Q Consensus 160 f~i~~~~~~~~l~~~ 174 (517)
|++..+..++..+..
T Consensus 370 ~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 370 WMMLGIIGLITLLAL 384 (400)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-07 Score=92.85 Aligned_cols=123 Identities=18% Similarity=0.076 Sum_probs=97.3
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.|..+++.+.+.+.++..++.++.|+++||+-+||+.+.++..+.+++.+++....+
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 285 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM---------------------- 285 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh----------------------
Confidence 6788899999999999999999999999999415666777888888888777766431
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g 155 (517)
+ ... ..-++.|+|.|...|...+.+.+..++++ +++...++.+...++|..++|.+.|++.+..|
T Consensus 286 --~-~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 --H-GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred --h-HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 111 23467899999999998888877665443 27888888888889999999999999987654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=94.09 Aligned_cols=133 Identities=9% Similarity=0.048 Sum_probs=91.2
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRI-YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~-l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
|.|..+++++.....++..++.+++|+++||+ |||+. +.....+.+++. +..... +
T Consensus 275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~-~~~~~~--~------------------- 331 (412)
T TIGR02332 275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGW-LLASAT--D------------------- 331 (412)
T ss_pred CCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHH-HHHHhc--C-------------------
Confidence 45677889999999999999999999999995 97775 344443444332 222211 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
+....+++-.+.++|.....+.......|.+|+++ |+.++++.+...++|..++|.+.|.+.+.. +|++.
T Consensus 332 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~ 402 (412)
T TIGR02332 332 ---HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSG 402 (412)
T ss_pred ---CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchh
Confidence 11112222223334443334444455567777766 999999999999999999999999998877 49999
Q ss_pred HHHHHHH
Q 010145 160 FGISTAT 166 (517)
Q Consensus 160 f~i~~~~ 166 (517)
|++..++
T Consensus 403 ~~~~~~~ 409 (412)
T TIGR02332 403 LWFVAAL 409 (412)
T ss_pred HHHHHHH
Confidence 9876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=93.82 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHH-HHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA-IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~-l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.+..+++++.+.+.++..++.+++|+++||+.+||+....... ...+..++..... +
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------ 306 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN--P------------------ 306 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC--c------------------
Confidence 367888999999999999999999999999984234433322111 1111111111110 0
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
..+.....+..++.|+......+....+..|.+|+++ |+++.++.....++|..++|.+.|++.+.+||+..
T Consensus 307 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 307 --AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred --chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 0133455566677777666666777788999999877 99999999999999999999999999999999876
Q ss_pred H
Q 010145 160 F 160 (517)
Q Consensus 160 f 160 (517)
|
T Consensus 379 f 379 (379)
T TIGR00881 379 F 379 (379)
T ss_pred C
Confidence 4
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-06 Score=88.15 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=99.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.++.+++++.+.+.++..++.+++|++.||+ |||+.+..+..+..++.++.......+.
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 297 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAILGL------------------ 297 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 367888999999999999999999999999995 9999999998888888777766431110
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~~~ 159 (517)
.....++...++.|+|.+...+.......|..| ++ |++..++....... |++.+|. .+.+.+..+|...
T Consensus 298 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~ 367 (385)
T TIGR00710 298 --GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMS 367 (385)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHH
Confidence 134455666778999999999999999988775 34 78888887776655 5555554 4466555555555
Q ss_pred HHH
Q 010145 160 FGI 162 (517)
Q Consensus 160 f~i 162 (517)
+..
T Consensus 368 ~~~ 370 (385)
T TIGR00710 368 LSC 370 (385)
T ss_pred HHH
Confidence 544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-07 Score=95.12 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=95.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchH-----H--HHHHHHHHHHHHHHHHHhhhccCCCCCCcccccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYR-----I--YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDG 73 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~-----~--l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~ 73 (517)
+|++..+++.+.+.+.++..++.+++|+++||+ |||+ . +.....+..++.++.+...
T Consensus 283 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--------------- 346 (476)
T PLN00028 283 FGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--------------- 346 (476)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhcccc---------------
Confidence 378889999999999999999999999999994 9762 2 2222222222222222211
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 74 IASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN 153 (517)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~ 153 (517)
+.+...+..++.+++.+...+...+++.+..| ++ |+...++.....++|+.++|.+.+ ..+.
T Consensus 347 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~g~lg~~i~~~l~~-~~~~ 408 (476)
T PLN00028 347 ----------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTGAGGNVGAVLTQLLFF-TGSS 408 (476)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhhccccHHHHHHHHHHH-hcCC
Confidence 23445555566666665555666666666544 33 889999988877778777776654 2334
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhcC
Q 010145 154 KGWQWGFGISTATILLSIPIFLLGS 178 (517)
Q Consensus 154 ~gw~~~f~i~~~~~~~~l~~~~~~~ 178 (517)
.+|+..|.+.++..+++.+..++.+
T Consensus 409 ~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 409 YSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ccHhhHHHHHHHHHHHHHHHHHhee
Confidence 5799999988877777776665554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-07 Score=94.97 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=96.1
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHH-HHHhhhccCCCCCCcccccCCCcccCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL-LTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
|.|..+++++...+.+++.++.+++|+++||+ |+++....+..+..+..+. ..+.. .+.
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------ 342 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWM-NPA------------------ 342 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHh-cCC------------------
Confidence 67888899999999999999999999999994 7654333333322222111 11110 000
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhccccCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCG-ALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG-~~ig~~i~g~l~~~~gw~~~ 159 (517)
.+.....+..++.|++.............|.+|+++ |+.+.++.+...++| .++||.++|++.+..||...
T Consensus 343 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~ 414 (438)
T TIGR00712 343 --GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 414 (438)
T ss_pred --CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHH
Confidence 022233344445555433322233346778888877 999999998888887 57899999999998899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010145 160 FGISTATILLSIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~ 176 (517)
|.+..+..+++++..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 415 FMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98776655555554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=93.65 Aligned_cols=131 Identities=14% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHH
Q 010145 15 FMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYI 94 (517)
Q Consensus 15 f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 94 (517)
..++..++.+++++++||+ |||+++.++..+.+++.++.++..+... ....+...-+.
T Consensus 344 ~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~~ 401 (502)
T TIGR00887 344 ALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVLFFVLGFAYNHLS---------------------THGFLAIYVLA 401 (502)
T ss_pred HHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHHHHHhcc---------------------hhHHHHHHHHH
Confidence 3445556788999999995 9999999998888888777665421000 11111111112
Q ss_pred HHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc----------cCchhhHHHHH
Q 010145 95 VALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN----------KGWQWGFGIST 164 (517)
Q Consensus 95 ~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~----------~gw~~~f~i~~ 164 (517)
..++..+..+....+.+|.+|.+. |+++.++.+....+|.+++|.+.+++.+. .++...|++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 475 (502)
T TIGR00887 402 QFFANFGPNATTFIVPGEVFPTRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFA 475 (502)
T ss_pred HHHHhcCCCchhhhhhhccCchhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHH
Confidence 222333345667778899999887 99999999999999999999999988762 34566777666
Q ss_pred HHHHHHHHH
Q 010145 165 ATILLSIPI 173 (517)
Q Consensus 165 ~~~~~~l~~ 173 (517)
+..+++.+.
T Consensus 476 ~~~~~~~i~ 484 (502)
T TIGR00887 476 LFMFLGILF 484 (502)
T ss_pred HHHHHHHHH
Confidence 655555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=88.88 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=104.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|++.++++.+.+.+.++..++.++.|++.||. + |+.+..+..+..+..+++....+
T Consensus 247 ~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~-~~~l~~~~~~~~~~~~~l~~~~~--------------------- 303 (394)
T PRK10213 247 AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-V-KLALAGAPLVLAVSALVLTLWGS--------------------- 303 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 377888899999999999999999999999993 5 44444444554444344333221
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+.+.++.++.|++.+...+..+.++.+..|+ + +++..++.....++|..+||.++|++.+..|++..+
T Consensus 304 ---~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~ 373 (394)
T PRK10213 304 ---DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPL 373 (394)
T ss_pred ---hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHH
Confidence 345677788899999999999999999988763 3 456667777888999999999999999989999999
Q ss_pred HHHHHHHHH
Q 010145 161 GISTATILL 169 (517)
Q Consensus 161 ~i~~~~~~~ 169 (517)
...+...++
T Consensus 374 ~~~~~~~~~ 382 (394)
T PRK10213 374 MLSGTLMLL 382 (394)
T ss_pred HHHHHHHHH
Confidence 887655443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-07 Score=95.90 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=105.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+++++.....++..++.+++|++.||+ |||+.+.++..+.+++..+.....+ +
T Consensus 286 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~~~~~~~~~-~------------------- 344 (485)
T TIGR00711 286 LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGFYWRAFTFT-P------------------- 344 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHhccCC-C-------------------
Confidence 377889999999999999999999999999995 9999999999998888887763211 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN 153 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~ 153 (517)
..+.+.+....++.|+|.|...+.......+..|+++ |+.+.++.+...++|..+|+.+.+.+.++
T Consensus 345 -~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 345 -DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1145566777889999999988888888888888776 99999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=94.30 Aligned_cols=132 Identities=16% Similarity=0.019 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHH
Q 010145 13 TNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGL 92 (517)
Q Consensus 13 s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 92 (517)
..+.+....+.++++++.||+ |||+.+.++.++.+++.++.....+. ......+..
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~~ 417 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPVD-----------------------LYFLRTALA 417 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCCC-----------------------chHHHHHHH
Confidence 344556677889999999995 99999999999988888877765311 123444555
Q ss_pred HHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 010145 93 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 172 (517)
Q Consensus 93 ~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~ 172 (517)
++.+++.++..+....+..|.+|++. |+.++++.+....+|.+++|.+.+ +. ..++..++.+.++..+++.+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 418 VLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence 66777778888889999999999877 999999999999999999999988 53 35677777776666655544
Q ss_pred HHHh
Q 010145 173 IFLL 176 (517)
Q Consensus 173 ~~~~ 176 (517)
..++
T Consensus 490 ~~~~ 493 (505)
T TIGR00898 490 LTLF 493 (505)
T ss_pred HHHc
Confidence 4433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-07 Score=93.57 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=99.3
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+....++......++..++.++.++++||+ |+|+++.++.++..++.++..+...
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~~~---------------------- 316 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWVSV---------------------- 316 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc----------------------
Confidence 44444444444444566778899999999995 9999999999999888877765421
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR-KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~-~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+.+.+++..++.|+|.+...+...++.+|..|.+|.++- ++++..++.+.+...+|..+|+.+.+.+-+..||
T Consensus 317 -~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 317 -WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1455677788899999999999999999999886542221 2358888999999999999999998877544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=84.26 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
.+.+++.+.+.++..++.++.|.++||+ |||+.+..+.....++.+++++..+ ...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 94 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-----------------------VGL 94 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-----------------------chH
Confidence 3679999999999999999999999996 9999999988887777677777642 157
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCc-ccchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHhhccc--cCchhhHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDE-TTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDN--KGWQWGFG 161 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~-~~~~~~~~r~~~~~~~~~-~~~lG~~ig~~i~g~l~~~--~gw~~~f~ 161 (517)
..+++.|+.+|++.|...+...+++.|.+|+ ++ |+...+.... ...+|..++|.+++.+... .+||..|.
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 7899999999999999999999999999997 33 8888888888 6888999998877777543 58998776
Q ss_pred HHHHHH
Q 010145 162 ISTATI 167 (517)
Q Consensus 162 i~~~~~ 167 (517)
+.....
T Consensus 169 ~~~~~~ 174 (338)
T COG0477 169 LAALLG 174 (338)
T ss_pred HHHHHH
Confidence 655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=103.12 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=112.1
Q ss_pred CCCCch-hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPS-SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~-~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.+.. +++++.+.+.++..++.++.|+++||+ ++|+.+.++.++.+++.++.....
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 320 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTAP--------------------- 320 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHhh---------------------
Confidence 367778 899999999999999999999999995 999999999888888877777653
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCchh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQW 158 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-~~gw~~ 158 (517)
+.+.+++..++.|++.++..+...+++.+..|++. |++++++.+...++|.++++.+++.+.. .+++..
T Consensus 321 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~ 390 (1146)
T PRK08633 321 ----SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAG 390 (1146)
T ss_pred ----hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 45567788899999999999999999999999887 9999999999999999988888877653 245555
Q ss_pred hHHHHHHH
Q 010145 159 GFGISTAT 166 (517)
Q Consensus 159 ~f~i~~~~ 166 (517)
.|++.+.+
T Consensus 391 ~~~~~~~~ 398 (1146)
T PRK08633 391 LFYLIALV 398 (1146)
T ss_pred HHHHHHHH
Confidence 66654443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=92.08 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=103.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|+.++++....+.++..++.+++|++.|| +||||++..+..+..++.++..+..
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~---------------------- 346 (438)
T PRK10133 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG---------------------- 346 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 47899999999999999999999999999999 5999999998877776665555432
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+. .-+++-.+.|+|.+.+.|+..+...|.++++. +.+.++... ..+|..++|.+.|++.+..| -|..
T Consensus 347 ---~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~ 414 (438)
T PRK10133 347 ---GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_pred ---Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-HhccchHHHHHHHHHHHhccchHHH
Confidence 11 12455678999999999999999999987532 223333332 33578888899999988887 7888
Q ss_pred HHHHHHHHHHH
Q 010145 160 FGISTATILLS 170 (517)
Q Consensus 160 f~i~~~~~~~~ 170 (517)
|++..+..+..
T Consensus 415 ~~v~~~~~~~~ 425 (438)
T PRK10133 415 ELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHH
Confidence 88766654433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=94.35 Aligned_cols=123 Identities=8% Similarity=0.019 Sum_probs=104.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.|+.+++.....+.++..++.+++|++.||+ |||+.+..+..+.+++.++...... .
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~~~~-~------------------- 348 (495)
T PRK14995 290 HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAMTDF-S------------------- 348 (495)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHhcC-C-------------------
Confidence 378899999999999999999999999999995 9999999999988888877655321 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
.+.+...+..++.|+|.|...+.....+.+..|+++ ++.+.++++...++|..+|+.+++.+.+
T Consensus 349 --~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 349 --TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred --CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133455677889999999999999999999888877 9999999999999999999999988753
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-06 Score=70.63 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=94.5
Q ss_pred hhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHH
Q 010145 327 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 406 (517)
Q Consensus 327 ~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (517)
..+..++..++..++.|+..|| +.+..+..+.+++.+..... .+.+.+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 54 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS---------------------SNITVL 54 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh---------------------ccHHHH
Confidence 3445555666666666554433 23556666666666554442 244566
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhh
Q 010145 407 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 486 (517)
Q Consensus 407 i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (517)
....++.+++.+...+....+..|..|++.|++++++.+....+|..+++.+.+.+.+ ..+++
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~ 117 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-----------------FLGWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc-----------------ccchH
Confidence 6777889999999889999999999999999999999999999999999998887652 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010145 487 RFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 487 ~~f~~~~~l~lv~~~~~~~~~ 507 (517)
..|++.+++.++..+..+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 118 APFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 778887777777766655543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=86.75 Aligned_cols=151 Identities=17% Similarity=0.097 Sum_probs=112.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
++.|..+++.+...|.+...+..+.||+++||+ |.+|+.++....++++..+..+..+...
T Consensus 249 fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~~~~~~------------------ 309 (417)
T COG2223 249 FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLFLTGFG------------------ 309 (417)
T ss_pred cCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHccccccc------------------
Confidence 467888999999999999999999999999995 9999999999999999999888642111
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
++.+...+++.-+..++..|.-...+..++..++|+ + -+.+.++.....++|...-|...+...+..| ++..
T Consensus 310 ~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~------~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~ 382 (417)
T COG2223 310 HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E------TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA 382 (417)
T ss_pred cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h------hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence 011333333333344444444444455555555554 2 7899999999999999888888888776666 8999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010145 160 FGISTATILLSIPIFLLG 177 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~ 177 (517)
|++-..+.+++.++.+..
T Consensus 383 f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 383 FMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888777777655444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=87.44 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=119.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|+.+...+.-.-++...++++++|+++|| +|.|+++..++++..+.++..-+..
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~---------------------- 339 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLE---------------------- 339 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHcc----------------------
Confidence 58899999999999999999999999999999 5999999999999999888776642
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~ 159 (517)
....+++.=++.|+..|..++.+-+|.++..|+++ -+++|+++.......+.+||++.+.+.+-. +-|..
T Consensus 340 ---~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 340 ---GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred ---ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 12235555568999999999999999999999988 889999999999999999999998887533 45777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010145 160 FGISTATILLSIPIFLL 176 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~ 176 (517)
+..-.++..+++++++.
T Consensus 411 ~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 411 VLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHHHHhhHhhEEe
Confidence 76555555555555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=100.84 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=112.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC-
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE- 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~- 79 (517)
+|.+..+++++.+.+.++..++.++.|+++|++ ++++.+..+.++.+++.+.+.+... .....+.. ......
T Consensus 256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~-----~~~~~~~ 328 (1140)
T PRK06814 256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASS-SVPAEPAQ-----LKSILVF 328 (1140)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhccc-cccccccc-----ccchhhh
Confidence 477889999999999999999999999999985 8888777777777766665554200 00000000 000000
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cccCchh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKGWQW 158 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~-~~~gw~~ 158 (517)
-...+.+.++++.++.|++.++..+...+++.+.+|+++ |+++++..+...++|..+++.+++.+. ...++..
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~ 402 (1140)
T PRK06814 329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPW 402 (1140)
T ss_pred hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 000144567788899999999999999999999999988 999999999999999999999999886 3456777
Q ss_pred hHHHHHHH
Q 010145 159 GFGISTAT 166 (517)
Q Consensus 159 ~f~i~~~~ 166 (517)
.|.+.+..
T Consensus 403 ~~~~~~~~ 410 (1140)
T PRK06814 403 IILFIALA 410 (1140)
T ss_pred HHHHHHHH
Confidence 76655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.4e-06 Score=85.17 Aligned_cols=138 Identities=11% Similarity=-0.014 Sum_probs=105.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|+.+++++.+.+.++..++.++.+++.||+ ++|+.+..+. +.++..++.+..+
T Consensus 236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~-~~~~~~~~~~~~~---------------------- 291 (393)
T PRK11195 236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGI-LMGLVVLLMALQH---------------------- 291 (393)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHH-HHHHHHHHHHHHh----------------------
Confidence 478899999999999999999999999999995 9999888775 3344433344332
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+.+...+..++.|++.+...+...+.+.|..|++. .+++..+..+...++|..++..+.+.+. ..|=+..+
T Consensus 292 ---~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 362 (393)
T PRK11195 292 ---SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYSLLV-KLGVPVVA 362 (393)
T ss_pred ---HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHHHHH-HcCCCHHH
Confidence 34556677888999999999888888887644332 2799999999999999999999988773 46666666
Q ss_pred HHHHHHHHHHH
Q 010145 161 GISTATILLSI 171 (517)
Q Consensus 161 ~i~~~~~~~~l 171 (517)
.+.+...++.+
T Consensus 363 ~~~~~~~~~~~ 373 (393)
T PRK11195 363 VIVGFGLLVAL 373 (393)
T ss_pred HHHHHHHHHHH
Confidence 65544444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.3e-06 Score=89.21 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHH
Q 010145 8 SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVM 87 (517)
Q Consensus 8 ~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (517)
.+.+.....+...++.++.++++||+ |+|+.+.++..+.+++.+...+.. + .+.+.
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~--~---------------------~~~~~ 321 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP--P---------------------SNVWL 321 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC--c---------------------chHHH
Confidence 34555566677788889999999995 999999998877765544333321 1 14556
Q ss_pred HHHHHHHHHHhcccccccchhhhcccCCcccch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 88 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL-GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 88 l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
+++..++.|+|.+...+...++++|..|.+|.+ .+++.+..++.+.+..++|..+|+.++|++-+..|+
T Consensus 322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788888999999999999999999998854422 233356788899999999999999999988665555
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=84.63 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|++.+++.|....-.....+..+++.++.||+ |||+.++.+..++.+..++...+..+.. ...
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~~~l~~---------------~~~- 363 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIALFLSN---------------SFG- 363 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHH---------------Hhh-
Confidence 67889999999999999999999999999995 9999999999999999888887654331 000
Q ss_pred CchhHHHHHHHHHHHHhccc-ccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGG-IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~-~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
.+..+..+++.++..++.+. .-|...-+.+|.+|++. |..++++-+...-+...+-......+.+.+|- +.|
T Consensus 364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~f 436 (485)
T KOG0569|consen 364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVF 436 (485)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhh
Confidence 11112334555554443333 37888889999999887 99999998888888888887788888877775 666
Q ss_pred HHHHHHHHHHHHHHHhcCCc
Q 010145 161 GISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~ 180 (517)
.+-.+..++..+..+...|+
T Consensus 437 ilF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 437 ILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 65555555444444444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=81.69 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=102.0
Q ss_pred cCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccc
Q 010145 323 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 402 (517)
Q Consensus 323 ~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (517)
+.....+...+..++...+.||..|| +.+..+.++.+++.+...+. .+
T Consensus 37 ~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------~~ 84 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA---------------------SN 84 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH---------------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh---------------------hh
Confidence 34445555666667667777665544 33777888888774444432 23
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCc
Q 010145 403 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 482 (517)
Q Consensus 403 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (517)
.+.+++..++.|++.+...+....++.+..|++.|++++++......+|..+++.+.+.+.+ .
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-----------------~ 147 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-----------------Y 147 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------H
T ss_pred HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-----------------c
Confidence 44788888999999999999999999999999999999999999999999999999887641 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 010145 483 YHLERFYWLMCILGGLNFLHFLFW 506 (517)
Q Consensus 483 ~~~~~~f~~~~~l~lv~~~~~~~~ 506 (517)
.+|++.|++.+++.++..++...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccchhhhhhhhHhhh
Confidence 457778999999998887754333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=91.29 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=126.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCc--chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCccc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT--TYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~G--rk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
.+.++.+++.++++..+...++.++.|+++|+. . ++.++.+++++.+++.+.++++.
T Consensus 328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~~-------------------- 386 (509)
T KOG2504|consen 328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFAT-------------------- 386 (509)
T ss_pred cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 368899999999999999999999999999995 7 45556666777777777777764
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-ch
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~ 157 (517)
++..++..=++.|+..|.+....+..+.|....++ -..++++......+++++||.++|++.+..+ |.
T Consensus 387 -----~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 387 -----TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 46678888889999999999999999999999887 9999999999999999999999999988777 99
Q ss_pred hhHHHHHHHHHHHHHHHHhcC
Q 010145 158 WGFGISTATILLSIPIFLLGS 178 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~ 178 (517)
..|..++...+++...+++.+
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 999998888887776665544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=76.44 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=115.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|++|.+.+-++-.+|..++ ++.|.+.|++ |.+.++.+|.+...+|+.++.++.+-. .
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~------------------i 91 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR------------------I 91 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc------------------c
Confidence 5899999999999999999986 8899999995 999999999999999999988764311 1
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
....++.+.+..++.|.|.+.+..++.....+.||+ + ||.+.++.-....+++.+-..+...+-+.-.-...+
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll 164 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLL 164 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHH
Confidence 112577788888888888887777777777788874 5 999999999888888887776665554432334555
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 010145 161 GISTATILLSIPIFLLGSP 179 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~ 179 (517)
.++....++.++...+.++
T Consensus 165 ~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 165 FLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHhhheec
Confidence 5555555555555555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=86.27 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
+..+++...+.++..++.++.++++||+ |+||++..+.++.+++.++..+... .+.
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 315 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLGP-----------------------GSP 315 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHHh-----------------------hhH
Confidence 4567888889999999999999999995 9999999999999999998888641 157
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL-GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
+.+++.-++.|+|.|...+...++++|..+.+|.+ .+++.+..++.+.+...+|..+++.+.+.+.+..|+
T Consensus 316 ~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 316 WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 78899999999999999999999999999965432 233468889999999999999999988877544333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=85.26 Aligned_cols=131 Identities=10% Similarity=0.079 Sum_probs=98.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
.+..+++.+...++..++.++.++++||+ |+|+++.++..+..++.+........+ ..+
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 323 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAA--------------------PHN 323 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC--------------------chh
Confidence 34456666666688889999999999995 999999999988777766654321001 014
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCccc-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT-QLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~-~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+.+++.-++.|++.+...+...++++|..|.+| +..+++.+..+++..+...+|..+|+.+.|++.+..|+
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5567777788999999999999999999988543 22233356688999999999999999999888654444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=82.28 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=81.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+.+.+.+.+.++..++.++.|++.||+ |||+.+.++..+..++.++..+...
T Consensus 234 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 291 (392)
T PRK10473 234 MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS--------------------- 291 (392)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 367888889999999999999999999999995 9999999999999888888777532
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
....+..-.+.+.|.+...+.. +..+..|.++ |+.. .+....++..+|+.+++++.+.+|+....
T Consensus 292 ----~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~------~~g~---~~~~~~~~~~~g~~~~~~l~~~~g~~~~~ 356 (392)
T PRK10473 292 ----HAVSLFGITLICAGFSVGFGVA--MSQALGPFSL------RAGV---ASSTLGIAQVCGSSLWIWLAAVLGISAWN 356 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc------cccH---HHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 1123333334444443333332 2233334333 3322 22333456666677777776666766544
Q ss_pred HHHH
Q 010145 161 GIST 164 (517)
Q Consensus 161 ~i~~ 164 (517)
.+.+
T Consensus 357 ~~~~ 360 (392)
T PRK10473 357 MLIG 360 (392)
T ss_pred HHHH
Confidence 4333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=85.60 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=90.2
Q ss_pred CCCCchhhHHHHHHHH-HHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFM-GTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~-~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|++.++.+.+.+.+. ++..++.+++|++.||+ ||||.+..+.++..++..+.....+.... ++
T Consensus 239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~-- 303 (356)
T TIGR00901 239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWLASNGHH------------DG-- 303 (356)
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCcc------------cc--
Confidence 4788889998888776 56788999999999995 99999999998888876665543210000 00
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHH
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLS 137 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~ 137 (517)
.+..+.+.+....++.+++.+...+...+++.|.+|+++ |++.+++++...|
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 000145677888889999999999999999999999998 9999999887665
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=80.21 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=96.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.|..+.++....+.++..++.++++++.||+ |+|+.+.......+++.+.+.+......
T Consensus 233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 293 (401)
T PRK11043 233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH------------------ 293 (401)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 367888899888888888889999999999995 9999887777776666554433211110
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW 158 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~ 158 (517)
.+...++++..+.|++.+...|.......|..| ++ |+++.+++......+...++.+.|.+.+......
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 294 --PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 033445566778899999999998888888765 34 8999999998888888888888888876433333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.7e-05 Score=79.10 Aligned_cols=134 Identities=9% Similarity=0.052 Sum_probs=96.1
Q ss_pred hhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHH
Q 010145 327 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 406 (517)
Q Consensus 327 ~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (517)
..+...+..++...+.|++.||. .+..+.++.+++.+..... .+.+.+
T Consensus 60 ~~~~~~~~~~~~G~l~dr~Grr~-----------~l~~~~~~~~~~~~~~~~a---------------------~~~~~l 107 (413)
T PRK15403 60 YLAGGMALQWLLGPLSDRIGRRP-----------VLITGALIFTLACAATLFT---------------------TSMTQF 107 (413)
T ss_pred HHHHHHHHHHhhhHHHHHcCchH-----------HHHHHHHHHHHHHHHHHHc---------------------CCHHHH
Confidence 33444455566666666555542 3666777776666655543 255677
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhh
Q 010145 407 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 486 (517)
Q Consensus 407 i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (517)
++.-++.|++++...+.......|..|++.+++.+++.+....++..+++.+.+.+.+ ..+|+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-----------------~~gw~ 170 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-----------------FVHWK 170 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hcCHH
Confidence 7778889999887667667778888999999999999999999999999988877652 13578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 010145 487 RFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 487 ~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
+.|++.+++.++..+..++..++
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999888888777655554444
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=77.53 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=107.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHH-HHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM-GLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~i-g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|+|+.+++.+.+.-...++...++.|.+.||+ ||+-..+.+..+.++ +-..+.++. .
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~--l------------------ 353 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTF--L------------------ 353 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhh--c------------------
Confidence 578999999999999999999999999999996 999888877666655 555565542 1
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc---cCc
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---KGW 156 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~---~gw 156 (517)
-=+++..+.|+...+...+.-+.++-..|+++ .|.+++..+...|+|-++.|.+.|.+.+. +.|
T Consensus 354 -------sPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 354 -------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred -------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 13567778888888877777788888888887 99999999999999999999999999864 346
Q ss_pred hhhHHHHHHHHH
Q 010145 157 QWGFGISTATIL 168 (517)
Q Consensus 157 ~~~f~i~~~~~~ 168 (517)
--.|.+..+.+.
T Consensus 421 le~ffl~~~~~a 432 (459)
T KOG4686|consen 421 LEAFFLIIGLMA 432 (459)
T ss_pred HHHHHHHHHHHH
Confidence 556665555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-05 Score=78.77 Aligned_cols=119 Identities=12% Similarity=0.067 Sum_probs=82.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
.|.++.+++++.+...++..++.+++|++.||+ |||+++..+..+..+..+........+
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 284 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVSALLD------------------- 284 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 367889999999999999999999999999995 999999998887665444333221101
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHH-HHHHHHHHHHHHH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFC-LSCGALIAVTFVV 148 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~ig~~i~g 148 (517)
.+.+.+.++-.+.+.+.+...++...++.|..| ++ |++..+..... ..+|..+++.+++
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 285 --LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 033445555556666666777777777777665 44 77777765443 3466666665544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0031 Score=64.96 Aligned_cols=143 Identities=14% Similarity=0.076 Sum_probs=107.8
Q ss_pred CCCchhhH-HHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 2 HFSPSSSA-NIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 2 ~~s~~~~~-~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
|++++|.. -+.-.+.=......++...++|. +|.|++++.+.+-..+..+++-...
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------------------- 92 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------------------- 92 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------------------
Confidence 45556653 33333444445577888999999 5999999999999888888888875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--ccCchh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED--NKGWQW 158 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~--~~gw~~ 158 (517)
+...+-+..+.-|++.+. ..+..+|+--..|+++ -.++.++...+.-+|-.++..+|-.+.. ..+++.
T Consensus 93 ---sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~ 162 (412)
T PF01770_consen 93 ---SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ 162 (412)
T ss_pred ---cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 456788889999988887 6677777777667655 7788899999999998988888876654 456778
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 010145 159 GFGISTATILLSIPIFLLG 177 (517)
Q Consensus 159 ~f~i~~~~~~~~l~~~~~~ 177 (517)
...++.....+++++.++.
T Consensus 163 L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 163 LNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 8888888777777665554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=83.07 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHH--------HHHHHHHHHHHHHHHHhhhccCCCCCCccccc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIY--------VISAAIEFMGLLLLTVQAHTRSLKPPTCVLED 72 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l--------~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~ 72 (517)
+|.+..+.+++.+...++..++.+++|+++||+ ++|+.. ..+......+..+..... ..
T Consensus 292 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 358 (465)
T TIGR00894 292 LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LS----------- 358 (465)
T ss_pred hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-cC-----------
Confidence 477888999999999999999999999999994 655321 111111111111111111 00
Q ss_pred CCCcccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 73 GIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
.+....++...+.+.+.+...+.......|..|. . ++.+.++.....++|..++|.+.|++.+
T Consensus 359 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 359 ----------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred ----------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 0223344445555555555555555555555543 3 8999999999999999999999998875
Q ss_pred c---cCchhhHHHHHHHHHHHHHHHHh
Q 010145 153 N---KGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 153 ~---~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
. .+|+..|.+.++..+++.+....
T Consensus 422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 422 QDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4 34888999887777766555443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=80.65 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHH
Q 010145 14 NFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLY 93 (517)
Q Consensus 14 ~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 93 (517)
...+...+..+++|+++||+ |+||++.++.++..++........ |. +...+.+.+.++.+
T Consensus 294 l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~l--p~-----------------~~~~~~~~~~~~~~ 353 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLTL--PG-----------------TGSGNFIAFYAVFM 353 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHh--cc-----------------ccccHHHHHHHHHH
Confidence 34566788889999999995 999999999988888765543331 10 01124556666666
Q ss_pred HHHHhcccccccchhhhcccCCc------c---------cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-cCch
Q 010145 94 IVALGVGGIKGSLAPHGAEQYDE------T---------TQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQ 157 (517)
Q Consensus 94 l~G~g~g~~~~~~~~~i~d~~~~------~---------~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~gw~ 157 (517)
...++.|.-..++..++.+.+|+ + ....|++-+.+.++......+|..+-|.+.|...+. -++.
T Consensus 354 ~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~ 433 (462)
T PRK15034 354 GLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPV 433 (462)
T ss_pred HHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcH
Confidence 66566666666667777666663 0 011223467888888899999888888766665443 4588
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 010145 158 WGFGISTATILLSIPIFLL 176 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~ 176 (517)
..|++..++.+++.++.+.
T Consensus 434 ~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 434 GAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888777776666655444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=84.43 Aligned_cols=132 Identities=12% Similarity=-0.022 Sum_probs=108.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|+.+.|.+.+...++..++..+.+++.+| ++.|+++.++.++.+++.+......+-+...
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~---------------- 345 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA---------------- 345 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc----------------
Confidence 58899999999999999999999999999999 5999999999999999887654321111000
Q ss_pred CCc-hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 010145 81 EGG-KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 155 (517)
Q Consensus 81 ~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g 155 (517)
.+. .....+..-++.+++.+........++.+..|+++ ++..+++.....|+|..+++.+++++.+..|
T Consensus 346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000 12245566778999999999999999999999888 9999999999999999999999999987776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=82.93 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
..+++.+.+.+++.++.+++++++||+ |+|+++..+..+..+..++..+.+. + +..
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~-~----------------------~~~ 319 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM-Q----------------------ASI 319 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch-h----------------------HHH
Confidence 345677788899999999999999995 9999988766655554444333211 0 222
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR-SAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r-~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+++.-++.|++.++..+...++++|..+.+|-++.+|| +..++...+...+|..+|+.++|++-+..|+
T Consensus 320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555667888888888888899998885543333444 4447888899999999999988877543343
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.6e-05 Score=76.51 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
++..++..-++.|++++.. +.......|..|++.|++++++......+|..+++.+.+.+.+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----------------- 139 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT----------------- 139 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 5678888889999999864 4444667889999999999999999999999999988887752
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
+.+|+..|++.+++.++..++.++..++
T Consensus 140 ~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 140 AGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2467889999888888877666665544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=74.46 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.......+...+..++...+.||+.||. .+.++.++.+++.++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~i~~~~~~~~~-------------------- 88 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRY-----------TTTLSLLLLAIPCLWAGLAV-------------------- 88 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 34556666666777777777777666542 37778888888877766541
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 463 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~ 463 (517)
.+.+.+++..++.|++.+.. +....++.+..|++.|++++++......+|..+++.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 04455666777888886654 445688999999999999999999888888888877776654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.8e-05 Score=76.51 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=91.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..+.+++......+..++.++.+++.||+ |++. ..+.....++.++........
T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~------------------- 295 (394)
T PRK11652 238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLLAGLLMWIPGWFG------------------- 295 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 367888889888888888888889999999995 7333 233333333322222111000
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
..+.+.++++.++.|+|.+...|....+..|.+|+ + ++...++.....++|..+++.+++++.....+....
T Consensus 296 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 296 -VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 01345677788999999999999999999998863 3 788889999999999999999999887654444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00046 Score=72.16 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhh
Q 010145 357 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 436 (517)
Q Consensus 357 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 436 (517)
++...+..|+.+.++=++.+..+ .++|.+++.-++.|+..+..-.+.-+|+...+|+++
T Consensus 434 GHv~v~~lgLa~~~~Rf~~~S~L---------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 434 GHVNVMYLGLACNVGRFLYYSYL---------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred cccceeeehhhHHHHHHHHHHHh---------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 44444667777777766666665 377888888899999999988888899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 437 RSLATSLSWA-SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 437 rg~~~gi~~~-~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
|+++.++... ...+|.-+|+.+.+.+.+. .+-+-+|+.+++-+++.++.+...-+..+
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----------------fg~~ttf~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVER-----------------FGARTTFRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhhee-----------------ehhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999764 4556666666666665432 12244678777777776655554433333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=79.85 Aligned_cols=130 Identities=14% Similarity=0.074 Sum_probs=98.4
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+...++...+.+.....++.+++|+++||+ ++||.+.++..+.++..++.....+
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~~~~------------------------ 321 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIFAGG------------------------ 321 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcCC------------------------
Confidence 344456677777788899999999999995 9999999988888888877777531
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc------Cch
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK------GWQ 157 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~------gw~ 157 (517)
. .-.+..++.|+..+.+.|+..+...+..+++. +..... ..++. +|..+.|.+.|++.|.. +.+
T Consensus 322 -~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~-l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~ 391 (410)
T TIGR00885 322 -H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG-LVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVN 391 (410)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH-HHHHH-hccchHHHHHHHHHHHhcccccCccc
Confidence 1 23566778889999999999999999998654 222222 22333 99999999999999843 578
Q ss_pred hhHHHHHHHHH
Q 010145 158 WGFGISTATIL 168 (517)
Q Consensus 158 ~~f~i~~~~~~ 168 (517)
..|.++.+..+
T Consensus 392 ~~~~~~~~~~~ 402 (410)
T TIGR00885 392 TSFILPLLCFA 402 (410)
T ss_pred hHHHHHHHHHH
Confidence 88988766543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-05 Score=80.56 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=92.7
Q ss_pred HHHHHHhhhhhhhhh-cccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHH
Q 010145 330 FILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 408 (517)
Q Consensus 330 ~~~i~~~l~~~~~~~-~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 408 (517)
...+..++.+++.|+ +.|| +.+.+|.++++++.+..+... .....+..
T Consensus 62 ~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~ 110 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI 110 (489)
T ss_pred HHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence 344444566666766 4444 337888888888887766531 11122445
Q ss_pred HHHHHHHHHHHHhhhhHHHhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhh
Q 010145 409 QYLFLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 486 (517)
Q Consensus 409 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~--rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (517)
..+++++|.+...|...+++.|..|++. |+.+.++++...++|..+++.+.+.+.+ +.+|+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~-----------------~~gw~ 173 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD-----------------KFGYS 173 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH-----------------hhChH
Confidence 6777899999999888999999998874 5778999999999999999999988852 13578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 487 RFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 487 ~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
+.|++.++..++.++.+....+++
T Consensus 174 ~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 174 VTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhh
Confidence 888886655555555554444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=68.75 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=75.1
Q ss_pred HHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHHHHh
Q 010145 19 AFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALG 98 (517)
Q Consensus 19 ~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 98 (517)
..+...+.|-++|| .|||+. .+.+++-++++++.-+-| ++-+++++|++.|+.
T Consensus 85 smLFGtivgSLaDk-qGRKra----cvtycitYiLsCiTKhSp----------------------qYkVLmVGR~LGGia 137 (454)
T KOG4332|consen 85 SMLFGTIVGSLADK-QGRKRA----CVTYCITYILSCITKHSP----------------------QYKVLMVGRVLGGIA 137 (454)
T ss_pred HHHHHHHHHHHHhh-hccccc----eeeehHHHHHHHHhhcCC----------------------ceEEEeehhhhhhHH
Confidence 34555788899999 599995 456777788877754322 566899999999999
Q ss_pred cccccccchhh-hcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhcccc--CchhhHHHHHHHHHHHHH
Q 010145 99 VGGIKGSLAPH-GAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNK--GWQWGFGISTATILLSIP 172 (517)
Q Consensus 99 ~g~~~~~~~~~-i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~~--gw~~~f~i~~~~~~~~l~ 172 (517)
++....+-.+. ++|.-++++ -|.+....-|+=.. +...+=++++...+-.+.+++ |--.+|-.+..+..++..
T Consensus 138 TsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmA 214 (454)
T KOG4332|consen 138 TSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMA 214 (454)
T ss_pred HHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 99988877664 455443322 11111222222111 222233444555555555543 556777765555444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=73.34 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=107.2
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+|..++|++++..++......+.+..+++|.--+|+........+.+|.+.+.+.+.
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~---------------------- 296 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG---------------------- 296 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh----------------------
Confidence 7899999999999999999999999999997657788888888888888888887642
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-CchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~-gw~~~f 160 (517)
+. .+..-++.|+|.|+..|....++.+..++.+ +-++.-++.+-...+=+.+||++.|++.|.. +|+.++
T Consensus 297 --~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~ 367 (395)
T COG2807 297 --QL--PILWALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPL 367 (395)
T ss_pred --hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHH
Confidence 22 2333589999999999999999999888655 2566666777777777888999999998754 688777
Q ss_pred HHHHH
Q 010145 161 GISTA 165 (517)
Q Consensus 161 ~i~~~ 165 (517)
..-..
T Consensus 368 ~~l~~ 372 (395)
T COG2807 368 VLLAL 372 (395)
T ss_pred HHHHH
Confidence 74433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=79.01 Aligned_cols=138 Identities=12% Similarity=-0.031 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhhhhh----HHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 8 SANIVTNFMGTAFLLALFG----GFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 8 ~~~i~s~f~~~~~l~~l~~----G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
.+|+.+.-.+...+..++. +++.||+ +.++.+.+|+++.++|.+..+++.+... +....
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~----------------~~~~v 380 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAN----------------DAGIV 380 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcC----------------CCCcc
Confidence 3444444444444555555 7778884 8889999999999999999888753210 11234
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----------c
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------N 153 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~----------~ 153 (517)
+.+++++..++.|+|++...|+..+++.+..|++. |++.++.+.....+|..++..+.+.... .
T Consensus 381 s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~ 454 (500)
T PRK09584 381 SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSL 454 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 67789999999999999999999999999999887 9999999988887777777666543321 1
Q ss_pred cCchhhHHHHHHHHH
Q 010145 154 KGWQWGFGISTATIL 168 (517)
Q Consensus 154 ~gw~~~f~i~~~~~~ 168 (517)
.++...|..-++..+
T Consensus 455 ~~~~~~f~~~~~~~~ 469 (500)
T PRK09584 455 EVYGRVFLQIGIATA 469 (500)
T ss_pred hhHHHHHHHHHHHHH
Confidence 135667765444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=75.90 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=109.5
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCc
Q 010145 4 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 4 s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+....+.+.+.=.+.-...-.+.+++-.| +|.|+++.++.+..++=..+.+..++ | .+.
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~-~-------------------~~~ 299 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSD-P-------------------WPF 299 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcC-C-------------------cHH
Confidence 34444555555555666777899999999 59999999999999998888887631 1 011
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhccccCch-----
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFC-LSCGALIAVTFVVWIEDNKGWQ----- 157 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~ig~~i~g~l~~~~gw~----- 157 (517)
.......+..++|+..|...++...|+.+..|++. |+++-+++... ..+|..+|..++|++.+.+|-+
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~ 373 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW 373 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 22334455678999999999999999999999888 89999987765 5699999999999998876544
Q ss_pred -hhHHHHHHHHHHHHHHHHhc
Q 010145 158 -WGFGISTATILLSIPIFLLG 177 (517)
Q Consensus 158 -~~f~i~~~~~~~~l~~~~~~ 177 (517)
..|.+.++..++..+++...
T Consensus 374 ~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 374 SAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 55556666555555555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.6e-05 Score=77.43 Aligned_cols=136 Identities=12% Similarity=0.127 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 6 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 6 ~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
.-.|.+.+.-.+.-++...+..++-+| +|.|+.++++..+.++=..++++++ +.
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~-------------------------~~ 312 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT-------------------------NP 312 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT---------------------------SH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc-------------------------ch
Confidence 345777888888888899999999999 5999999999999999999999885 56
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhccccCchhhHHHHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 164 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~ 164 (517)
+.+.+.+.+.|+-.+....+...|+++.+|++- .+....+ ...+..+|..+.+.++|++.|..|++..|++-+
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 689999999999999999999999999999765 5556665 467888999999999999999999999998666
Q ss_pred HHHHHHHHH
Q 010145 165 ATILLSIPI 173 (517)
Q Consensus 165 ~~~~~~l~~ 173 (517)
..+++..++
T Consensus 387 ~iv~~~~li 395 (412)
T PF01306_consen 387 LIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0045 Score=63.70 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHH
Q 010145 9 ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVML 88 (517)
Q Consensus 9 ~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (517)
+.+.-+-.+...+.-+++.++.+|. -.+.=++....+.++|-++.+++. +.++-
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~-------------------------~v~~~ 115 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP-------------------------SVWVR 115 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc-------------------------chhHH
Confidence 4466666677778888999999995 766666677778888888888874 45567
Q ss_pred HHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCchhhHHHHHHHH
Q 010145 89 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTATI 167 (517)
Q Consensus 89 ~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-~~gw~~~f~i~~~~~ 167 (517)
+++-++.+++.|.-+.....+.+ .+++ ...+.+..+...+.++|+..=-.+.. .++-|..+.+..++.
T Consensus 116 l~Gv~las~ssg~GE~tfL~lt~-~y~~----------~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp 184 (402)
T PF02487_consen 116 LLGVVLASLSSGLGEVTFLSLTH-FYGK----------SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLP 184 (402)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHH-hcCc----------cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 88889999999999999888855 4442 23456666666666666644333333 245577777766655
Q ss_pred HHHHHHHHhc
Q 010145 168 LLSIPIFLLG 177 (517)
Q Consensus 168 ~~~l~~~~~~ 177 (517)
++.++.+++.
T Consensus 185 ~~~~~~~f~~ 194 (402)
T PF02487_consen 185 AIFLLSYFFL 194 (402)
T ss_pred HHHHHHHHHh
Confidence 5444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00027 Score=71.95 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=127.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|..|...+...+..|..++....|++..|..|+|++-.+++.+..++..++.++....
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~------------------- 299 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG------------------- 299 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 5789999999999999999999999999999667999999999999999988888876433
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-------- 152 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-------- 152 (517)
+.+.|..+-++.|+|.|.+........-|..++++ .+..++.|..+..+...+|..++|.+.|
T Consensus 300 ---~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~ 370 (403)
T PF03209_consen 300 ---SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN 370 (403)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56789999999999999999999999999998877 8899999999999999999999888753
Q ss_pred --ccCchhhHHHHHHHHHHHHHHHHh
Q 010145 153 --NKGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 153 --~~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
..+|..+|.+-.+..++++.+...
T Consensus 371 ~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 371 SPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 246778888887777766665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=75.07 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=93.9
Q ss_pred HHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHH
Q 010145 16 MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 95 (517)
Q Consensus 16 ~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 95 (517)
.+..+-|.++.+++.|| +||||++..+.+++++..+++....+-. .--.+++.+|+..
T Consensus 391 slaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~rn---------------------~~tvllf~arafi 448 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTRN---------------------AYTVLLFTARAFI 448 (528)
T ss_pred HHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCcc---------------------hhHHHHHHHHHHH
Confidence 34455688999999999 5999999999999999988877754211 0223566777776
Q ss_pred HHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 010145 96 ALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 96 G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~~ 173 (517)
.+..-+.+.|.-|.||..- |+...+.-..+.-+|+++.|.++ +..+.+-..+..+..+..+++.+.
T Consensus 449 ----sg~fqvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 449 ----SGAFQVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred ----hchheEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence 5556678899999999877 99999999999999999999998 333345556666666666655544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=77.76 Aligned_cols=147 Identities=9% Similarity=-0.083 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHhhhhhH----HhhcccCcchHHH--HHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 8 SANIVTNFMGTAFLLALFGG----FLADAFFTTYRIY--VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 8 ~~~i~s~f~~~~~l~~l~~G----~laDr~~Grk~~l--~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
.+|+.+.-.+...+.+++-. ++.||..+.+... .+|+++.+++.+..+++.... ++..
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~----------------~~~~ 377 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA----------------DAGG 377 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCCC
Confidence 45666666666666665544 4555521334433 778888888888877642111 0112
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
..+.+++++..++.++|+....|...+++.|..|++. |++.++++.....+|..+++.+.....+..+|...|.
T Consensus 378 ~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~ 451 (475)
T TIGR00924 378 LTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG 451 (475)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 3478899999999999999999999999999999887 9999999999999999999988887766668888888
Q ss_pred HHHHHHHHHHHHHHh
Q 010145 162 ISTATILLSIPIFLL 176 (517)
Q Consensus 162 i~~~~~~~~l~~~~~ 176 (517)
..+...++..+++++
T Consensus 452 ~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 452 KIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555544444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.4e-05 Score=76.18 Aligned_cols=143 Identities=12% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.+...-.+..++.+|+.+.+.+++..|. .+.+|++.+..+.+++++.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~i-----------pm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKI-----------PMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhcccc-----------HHHHHHHHHHHHHHHHHHcc--------------------
Confidence 44555556666777777777777666654 39999999999999999863
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCC
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 479 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (517)
+...++++=.+.|+|..+.....+++..+..|++. ||+++|+.-...++|..+++.+.+.+.+..
T Consensus 158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~------------- 223 (464)
T KOG3764|consen 158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA------------- 223 (464)
T ss_pred -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-------------
Confidence 44477888899999999999999999999998877 599999999999999999999999987533
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 480 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 480 ~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
+++..|.++++++++...+-++..+-++.
T Consensus 224 ----Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 224 ----GKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred ----CCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 33567999999999999887777655443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00052 Score=72.78 Aligned_cols=212 Identities=11% Similarity=0.030 Sum_probs=123.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCC
Q 010145 277 IVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGI 356 (517)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~ 356 (517)
++++....+...++.|.....+.+.+. +..+.+.. ..+....+.++...+..|+.+.+.|+...|.+||
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR---- 73 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHA------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR---- 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHH------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----
Confidence 455555555666665655544444332 21222221 2234556667788888888888888655454433
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccch
Q 010145 357 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS--SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL 434 (517)
Q Consensus 357 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~ 434 (517)
+..+..|.+..+++++++++...... -..++ ++......+..+..+.+..++.....++.-+++.|.+|+
T Consensus 74 --rp~il~g~~~~~~~l~ll~~~~~~~~------~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~ 145 (477)
T TIGR01301 74 --RPFIAAGAALVAFAVILIGFAADIGH------LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG 145 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCchhhh------hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 11234456667777666665421100 00000 011112223445555556667776777778999999998
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccC--CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 435 SMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG--SNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 435 ~~r--g~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
+.| +.+.++......+|+.++..+.+....... -++... ......+++..|++.+++.+++.++..+..+++
T Consensus 146 ~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 146 DARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI----FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh----cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 876 578998899999999999998876521100 011000 011123778889998888888888777777765
Q ss_pred c
Q 010145 511 K 511 (517)
Q Consensus 511 ~ 511 (517)
+
T Consensus 222 ~ 222 (477)
T TIGR01301 222 P 222 (477)
T ss_pred C
Confidence 4
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=73.86 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|-+..+..+.......+..++.++..++++| +|+|+++.++.++.++++++.-+.+ +
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~--~-------------------- 324 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP--A-------------------- 324 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc--C--------------------
Confidence 3444555666677777777779999999999 5999999999999999999988874 1
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ-LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN 153 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~-~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~ 153 (517)
.+..+.++..++.++|.+...+..-++++|..+-.|- ++.++-|-.++.+.+..-+|.+++..+.|++-..
T Consensus 325 -~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 325 -GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred -cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1678899999999999999999999999999885543 3333356778889999999999998877776443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=80.66 Aligned_cols=172 Identities=15% Similarity=0.012 Sum_probs=108.8
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHh-------h---
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK--RKRVA-------V--- 388 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~--~~~~~-------~--- 388 (517)
+.+.+...+...+..++..++.++..|| +.+.+|.++++++.++.+..+.. ++... +
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 4455566666666666666666554443 23778888888888877654311 11000 0
Q ss_pred -hcCCCCCC---------------CCc--ccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHH
Q 010145 389 -NSGLVNSS---------------EPL--PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM 450 (517)
Q Consensus 389 -~~~~~~~~---------------~~~--~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i 450 (517)
.+...+++ +.. ...+..+++.-++.|+|++...+...+++.|.+|++.|+.+.++.+....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 00001000 000 113456677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCc---cC-CCCC------cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010145 451 GYYFSTVLVSIVNNITSTYRHTPWL---FG-SNLN------HYHLERFYWLMCILGGLNFLHFLFWAA 508 (517)
Q Consensus 451 g~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~~~------~~~~~~~f~~~~~l~lv~~~~~~~~~~ 508 (517)
|..+|+.+.+.+.+.-. +|- ++ .+++ .+.|+..|++.+++.++..+.++++.+
T Consensus 220 G~~lG~llgg~l~~~~~-----d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 220 GPAFGYLLGSFCLQIYV-----DTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred hhHHHHHHHHHHHhccc-----ccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999988764321 110 00 0011 123666688888877776665555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=76.17 Aligned_cols=135 Identities=11% Similarity=0.061 Sum_probs=89.6
Q ss_pred hHHHHHHHhhhhhhhhhc-ccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHH
Q 010145 328 VIFILILAPVYNHVIIPF-ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 406 (517)
Q Consensus 328 ~~~~~i~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (517)
.....+..++..++.||+ .|| +.+.+|.++++++.++.+... .+...+
T Consensus 55 ~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~~~~~~ 103 (493)
T PRK15462 55 CSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------IHPSFL 103 (493)
T ss_pred HHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------cchhHH
Confidence 344445555667777776 443 236778888877765544321 111123
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcch
Q 010145 407 ALQYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYH 484 (517)
Q Consensus 407 i~~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (517)
.+...+..+|.+...+...+++.|..|++ .|+++.++.+...++|..+++.+.+.+.+ +.+
T Consensus 104 ~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-----------------~~G 166 (493)
T PRK15462 104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-----------------EYS 166 (493)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-----------------hhC
Confidence 33444555666776677778899999876 69999999999999999999999988752 245
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 485 LERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 485 ~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
|++.|.+.++..+++++.++...+++
T Consensus 167 w~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 167 WAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 78888887766666666655544443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00093 Score=69.90 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=78.9
Q ss_pred HHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHH
Q 010145 330 FILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQ 409 (517)
Q Consensus 330 ~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 409 (517)
.-.+......++.|++..| +.+.++.+...+..++.++. .+...+.+.
T Consensus 74 sYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa---------------------~Sl~~L~i~ 121 (511)
T TIGR00806 74 SHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLG---------------------TSVWHMQLM 121 (511)
T ss_pred HHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 3334444445555544433 34777777777777777764 257788889
Q ss_pred HHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 410 YLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 462 (517)
Q Consensus 410 ~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~ 462 (517)
-++.|++|+... +...++++.+|++.|++++|+.+....+|.++++.+.+.+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 8889999999999999999999999999999999999884
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=71.08 Aligned_cols=137 Identities=12% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
.++...+.+...+..|+.+.+.|-++||.. ++.|.++..+++++.+..
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA--------------------- 128 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATA--------------------- 128 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcC---------------------
Confidence 345566777777777888888888887753 788888888888877754
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
.+...++...++.|+|.+...... ..+.|..|.+.|+.+.++.....-.....++.+...+.
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~----------------- 190 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA----------------- 190 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----------------
Confidence 244466777888888877766544 56889999999988776665443333334445444332
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 481 NHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
.+.+|+|.|++.+++..++++...++.
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 135679999998888888776555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=71.75 Aligned_cols=119 Identities=6% Similarity=-0.016 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhH
Q 010145 358 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR 437 (517)
Q Consensus 358 ~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r 437 (517)
++..+.+|.++.+++.++.+.... + ....+.+.+.+..++.|+|++...+.....+.+.+| +.|
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~R 153 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNR 153 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence 334588899999998888776420 0 012356777888889999999988888888888887 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 438 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 438 g~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
|+++|+......+|..+.+.+...+.. .+++.+|++.+++.++..++.+.+.+..
T Consensus 154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~------------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 154 GAVVAIMKTFTGLGSAILGSIQLAFFS------------------DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 999999999999999875555544431 2345678888888877766666554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.094 Score=54.90 Aligned_cols=141 Identities=9% Similarity=-0.085 Sum_probs=82.7
Q ss_pred HHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHh----hhccCCCCCCcccccCCCcccCCCCchhH-HHHHHH
Q 010145 18 TAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQ----AHTRSLKPPTCVLEDGIASCREDEGGKAV-MLFAGL 92 (517)
Q Consensus 18 ~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~r 92 (517)
...++.+.-|...||. -|.|++..+.+..-++-++.+.. -..+. -.+.++.... .+.+.-
T Consensus 50 ~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~ 114 (432)
T PF06963_consen 50 SAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVAASCALFLLLLSYPS--------------SSSQSSWLFIALFALLI 114 (432)
T ss_pred HHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHH
Confidence 4445667788899995 99999998887766554443322 10010 0000112222 222333
Q ss_pred HHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 010145 93 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 172 (517)
Q Consensus 93 ~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~ 172 (517)
++..+..=.......+.--||..-=..++...+.+..+...-.=.+--++||++.|.+....|.+....+.++..++++.
T Consensus 115 ~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~ 194 (432)
T PF06963_consen 115 LLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVF 194 (432)
T ss_pred HHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 33333333334444444456543211122334778888888777888899999999998878888777776666666665
Q ss_pred H
Q 010145 173 I 173 (517)
Q Consensus 173 ~ 173 (517)
.
T Consensus 195 v 195 (432)
T PF06963_consen 195 V 195 (432)
T ss_pred H
Confidence 4
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=57.21 Aligned_cols=104 Identities=8% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHH
Q 010145 12 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG 91 (517)
Q Consensus 12 ~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (517)
.+.-.....+.+++++.+.++ +|.|+++.+|.+.+++-.+..-. + +.+.++.+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~----------------------~~~~l~~~ 95 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P----------------------NSYTLYPA 95 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h----------------------hHHHHHHH
Confidence 344445556666778888999 59999999999888854333211 1 56689999
Q ss_pred HHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010145 92 LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 148 (517)
Q Consensus 92 r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g 148 (517)
=++.|+|.+..+.+.-.++.+..++++ |++-.+++....+++.++|..+.-
T Consensus 96 s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 96 SALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887665 888888888888888887765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0045 Score=65.58 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=95.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhh
Q 010145 357 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 436 (517)
Q Consensus 357 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 436 (517)
+.++.+..+.++.+++-++..+.. ..+.+.+++.=+++|++++...|....+..+-+|+++
T Consensus 101 G~r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 101 GARRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 344457788888887777777653 2344577888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010145 437 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 508 (517)
Q Consensus 437 rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~ 508 (517)
|++..++......+|..++..+.+.+.+. ..+|+..|++.++++++-.++++++..
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s----------------~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCES----------------SLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcc----------------CCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888742 256788999999999888877666644
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=66.35 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
+.+.++...++.|+.|....|....+......++.||+-+|+++....+|+++|+.+...+.+.- . ...
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~----------~-~~~ 201 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN----------G-SGG 201 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc----------C-CCC
Confidence 55678888899999999999999999999999999999999999999999999999988765311 1 223
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
..+|++.|.+-++++++..++.+++.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEe
Confidence 46789999999999988876655543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00065 Score=71.05 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=108.7
Q ss_pred HHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHHHH
Q 010145 18 TAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVAL 97 (517)
Q Consensus 18 ~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 97 (517)
+-.+.-++.+++..|+ |+-+++..+++.+++=.+..+... +.|+.+..-+++|+
T Consensus 418 gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~-------------------------n~W~vLPieilqgi 471 (618)
T KOG3762|consen 418 GEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ-------------------------NPWMVLPIEILQGI 471 (618)
T ss_pred chHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc-------------------------CchheeeHHHHHHH
Confidence 4455668889999995 999999999999999988888875 56678889999999
Q ss_pred hcccccccchhhhcccCCcccchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHh
Q 010145 98 GVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY-VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 98 g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
.-+.++.++.+|+++..||+- |..+-++. ...-.+|--+|.++||.+.+.+|-|-.|.+.++.+++.++.+..
T Consensus 472 t~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 55555433 33456888899999999999999999999988888877777665
Q ss_pred cCCcc
Q 010145 177 GSPFY 181 (517)
Q Consensus 177 ~~~~~ 181 (517)
..+..
T Consensus 546 iq~~l 550 (618)
T KOG3762|consen 546 IQLLL 550 (618)
T ss_pred hhhhh
Confidence 54433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0042 Score=66.96 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=101.9
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.+.....+...+..++...+.|+++||.. +..+.++..++.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-----------l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKT-----------LLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHh---------------------
Confidence 355666666777777777777777777632 777888888888777765
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
.+..+++..-++.|+|.+........|..|.+|++.||...++..+...+|..++..+ +... . +.
T Consensus 140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~-~~~~-------------~-~~ 204 (513)
T KOG0254|consen 140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI-NYGT-------------S-KV 204 (513)
T ss_pred hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH-hhhh-------------c-cC
Confidence 2677899999999999999999999999999999999999999999888888887333 2221 1 11
Q ss_pred CcchhhHHHHHHHHHHHHHHHH
Q 010145 481 NHYHLERFYWLMCILGGLNFLH 502 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~ 502 (517)
+ .+|+..+++..+.+++..+.
T Consensus 205 ~-~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 205 Y-AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred C-ccHHHHHHHHHHHHHHHHHH
Confidence 1 46788888877777777666
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00088 Score=68.87 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=98.4
Q ss_pred HHHHH-hhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHH-HHHHH
Q 010145 17 GTAFL-LALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLF-AGLYI 94 (517)
Q Consensus 17 ~~~~l-~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~l 94 (517)
..+.+ +..++.++.|+ +|||++.+-+.+++++-.+.++...+. ++ +...+-.++ +..++
T Consensus 358 ~~~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~-----------------~~-~~~Gf~v~y~l~~ff 418 (538)
T KOG0252|consen 358 VCSTVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQ-----------------LE-NTIGFVVLYSLTFFF 418 (538)
T ss_pred HHccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCccc-----------------cc-ccCceeehHHHHHHH
Confidence 33344 66788889999 599999999999999999988886531 11 111222222 22233
Q ss_pred HHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----ccCchhhHHHHHHHHHH
Q 010145 95 VALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-----NKGWQWGFGISTATILL 169 (517)
Q Consensus 95 ~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-----~~gw~~~f~i~~~~~~~ 169 (517)
+.-+--.+.-.+-+|.+|.+- |+.+.++..++.-+|+++|.....++.+ ..+.+.+|++.+..+++
T Consensus 419 ---~NFGPn~ttfivpaE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~ 489 (538)
T KOG0252|consen 419 ---GNFGPNATTFIVPAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL 489 (538)
T ss_pred ---HhcCCCceeEEeehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH
Confidence 333333444555589999877 9999999999999999999999999998 78999999999988887
Q ss_pred HHHHHHhc
Q 010145 170 SIPIFLLG 177 (517)
Q Consensus 170 ~l~~~~~~ 177 (517)
+.+..++.
T Consensus 490 gi~~T~l~ 497 (538)
T KOG0252|consen 490 GILFTLLI 497 (538)
T ss_pred hHheeEEe
Confidence 77665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.1 Score=57.75 Aligned_cols=311 Identities=10% Similarity=-0.017 Sum_probs=195.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
...-..+.|....++.++.....+|..-|+-..+..-+....++.+...+.. +.+ .+...+..
T Consensus 21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a----------------~~~~~~~~ 83 (654)
T TIGR00926 21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA----------------IPSSGHPL 83 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc----------------Ccccccch
Confidence 4456778899999999999999999987777777777777777777676653 110 01111133
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chh------h
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQW------G 159 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~------~ 159 (517)
...+..+...++.++..+.-+...+++.+..+ .+.+.+..+++++..+.+.+ |.+++..+..... +.. .
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcc
Confidence 45567777899999999999999999998655 55566799999999987766 5667766654332 211 2
Q ss_pred HHHHH-HHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccC
Q 010145 160 FGIST-ATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKE 238 (517)
Q Consensus 160 f~i~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (517)
|.... +.+++.++.+......++..++++.......++.......
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a---------------------------------- 205 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTA---------------------------------- 205 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHH----------------------------------
Confidence 44333 3444454555554433333332222111111111111100
Q ss_pred CCCCCCCCchhHHHHHhhhcCC--CCCcccc--cchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCC
Q 010145 239 KVPSQKPTEDIKFLNRALRNNP--AYPIVQC--TVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG 314 (517)
Q Consensus 239 ~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (517)
..++...... ...|... .+..+++.+.+.+++.++...+.+++.+.++......+..+++...+
T Consensus 206 ------------~~~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~ 273 (654)
T TIGR00926 206 ------------LRKRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG 273 (654)
T ss_pred ------------HHHhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC
Confidence 0000000000 0111111 11223456778888999999999999999988888888888887644
Q ss_pred CeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 315 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 387 (517)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~ 387 (517)
.+...+.....++.+-.+++.++...+..++.+++.++ ....+++.-+.+++.++.+.++..+.......
T Consensus 274 ~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 274 DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334456667777777777766667788876443 45677899999999999999999988877775
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.80 E-value=3.5e-05 Score=81.39 Aligned_cols=141 Identities=17% Similarity=0.051 Sum_probs=89.6
Q ss_pred HHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHH-HhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHH
Q 010145 15 FMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLT-VQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLY 93 (517)
Q Consensus 15 f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 93 (517)
..+...++.+++.++.|| +|||++++.+..+.+++.+.++ ...... +.+...+........+
T Consensus 295 ~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGV----------------SSSSWWSILSIVFLAL 357 (451)
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccc----------------ccccccccccceeeee
Confidence 334455677788899999 5999999999999888887775 111000 0000112222222221
Q ss_pred HHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 010145 94 IVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 173 (517)
Q Consensus 94 l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~~~~~~l~~ 173 (517)
.......+..+....+..|.+|.+. |..+.++.+....++..+++.+..++.+..+-...|.+..+..++..+.
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 2222222445777789999999887 9999999999999999999988888877666344555544444444444
Q ss_pred HHhcC
Q 010145 174 FLLGS 178 (517)
Q Consensus 174 ~~~~~ 178 (517)
.++..
T Consensus 432 ~~~~l 436 (451)
T PF00083_consen 432 VYFFL 436 (451)
T ss_pred eeEEE
Confidence 33333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0048 Score=62.13 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=84.1
Q ss_pred CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 010145 321 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 400 (517)
Q Consensus 321 ~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (517)
+.+.....++-.+..|+.+.+.|+.+||- .+.+|++..++.....+..
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----------vll~c~~~va~s~ll~~~S--------------------- 118 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKP-----------VLLACLIGVALSYLLWALS--------------------- 118 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchH-----------HHHHHHHHHHHHHHHHHHH---------------------
Confidence 34444455555666666666666666552 3777777777777766654
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010145 401 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 464 (517)
Q Consensus 401 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~ 464 (517)
.++..++..=++.|+.-+-..+.- +++.|+++++.|+.+++...++.++|.++||++.+.+..
T Consensus 119 ~~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 RNFAAFVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 245556665778888888887777 899999999999999999999999999999999999875
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=62.23 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 010145 324 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 403 (517)
Q Consensus 324 ~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (517)
+.+..+...+...+.+.+.|+++||. .+..++++..++.+..++. .+.
T Consensus 124 ~s~~~~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a---------------------~~~ 171 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA---------------------PNY 171 (521)
T ss_pred HHHHHHHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh---------------------CcH
Confidence 34444555555555555666655543 2666677666666555554 367
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcc
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 483 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (517)
+.+.+.-++.|++..........++.|..+++.|+.+..+ ......+..+++.....+. .
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------------------~ 231 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------------------R 231 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------------h
Confidence 7888888999999999999999999999999999999999 7777788888777777765 2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 010145 484 HLERFYWLMCILGGLNFLH 502 (517)
Q Consensus 484 ~~~~~f~~~~~l~lv~~~~ 502 (517)
+|++.+|+..+.+++.++.
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5689999988888877666
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.3 Score=47.13 Aligned_cols=137 Identities=7% Similarity=0.017 Sum_probs=83.8
Q ss_pred chhhHHHHHHHHHHHHHh-hhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCcccccCCCcccCC--
Q 010145 5 PSSSANIVTNFMGTAFLL-ALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAH-TRSLKPPTCVLEDGIASCRED-- 80 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~-~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~-- 80 (517)
.+...|+.+...+.+.+. .++-+++++|+ +|+|.+.+-...+..-.++.++.-- .+....|+..-.+....++..
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 356788888877776666 88899999995 9999999877777766666555310 010111110000000000000
Q ss_pred ------CCchhHHHHHHHHHHHHhcccccc-cchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 81 ------EGGKAVMLFAGLYIVALGVGGIKG-SLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 151 (517)
Q Consensus 81 ------~~~~~~~l~~~r~l~G~g~g~~~~-~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~ 151 (517)
+.+....|++ ...+=...... .--.+..|.++.+| -.|.++++..+.|+|.++++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv---~~elw~~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYV---MAELWGSVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112222 22222222333 56678899999887 889999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=59.85 Aligned_cols=132 Identities=16% Similarity=0.120 Sum_probs=102.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+++-.++.|..+..++..++-++-.| +-..|.+.+....-.+-++..+++.+
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~g---------------------- 324 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIGG---------------------- 324 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhcC----------------------
Confidence 6788899999999999999999999999999 49999998877776666666666542
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
..-+.+.++.|+-.+.+.|++.+...+..+++. .++.. .-.+.-+|.++.|.+-|++.|..+-...+.
T Consensus 325 ----~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~---~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 325 ----VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ----hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 134556778999999999999999999999544 13332 233344788889999999999999888877
Q ss_pred HHHHHHH
Q 010145 162 ISTATIL 168 (517)
Q Consensus 162 i~~~~~~ 168 (517)
+....+.
T Consensus 393 ~~pllc~ 399 (422)
T COG0738 393 IVPLLCY 399 (422)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0055 Score=47.76 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=41.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHH
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 47 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~ 47 (517)
.|+|..|.|.+.++-.+...+++++.|+++||+ ||+|.++....++
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 478999999999999999999999999999995 9999988876654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.64 Score=47.24 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 462 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~ 462 (517)
...+..+.+.++.....+...+++..+++|++..|++|.+.++..++|..-=..+...+
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l 428 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWL 428 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHh
Confidence 34555678888888888899999999999999999999999998888876544444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.085 Score=55.63 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc-chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhH
Q 010145 359 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI-TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR 437 (517)
Q Consensus 359 ~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r 437 (517)
++.+.+|.+++.++.+++..++. .+. ..+++.++.++.|+|.+-....= .|+.+-.-.+.|
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~-----------------~~~~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR 163 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAY-----------------VPNGVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDR 163 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHh-----------------cccchHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccch
Confidence 34499999999999999966642 122 67889999999999977665555 677776666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010145 438 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512 (517)
Q Consensus 438 g~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~ 512 (517)
.++++.......+|..+|+.+...+....... -.|.+ +.+-..|...=|+.+++.++.++...+..++..+
T Consensus 164 ~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~--~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 164 PRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILP--GLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcC--cceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 88888888888888888888887776543221 12222 1333445556788888888888877777666543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.083 Score=54.37 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchh---hH
Q 010145 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MR 437 (517)
Q Consensus 361 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~r 437 (517)
-+.+|.++..++.++....... + ...+..+...+.+...++++|.+..=|....+..++.+++ .|
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-----------~-~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-----------P-SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-----------S-SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-----------c-hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 3677888888888875554200 0 0012234567788888999999999999999999998776 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 438 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 438 g~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
..+...++...++|..++..+.+.+.+ +.+|...|++.++..++++++++.-.++++.+
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~-----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQ-----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHH-----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhcc-----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 667777888899999988887776652 35678889999999999988887777777665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0028 Score=68.48 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=3.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------------C
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST------------Y 469 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~------------~ 469 (517)
....+++..++.|+|.....+...+|+.|.++++..+.+.|+......+|-.+|-.+.+...+.-.+ .
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 3578889999999999999999999999999999999999999999999999888887766542111 1
Q ss_pred CCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 470 RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
+..+|+ +.|..-|++.+++.++..+.++.+-|+.+..
T Consensus 220 ~dp~Wv-------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 220 SDPRWV-------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------
T ss_pred CCccHH-------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 112222 2344457777888877777777766655544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=56.40 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 481 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (517)
.+..+++..++.|+|+....+...+|+.|.+.++..+.+.|+.++.+.+|-++|-.+.+...+.=.+.. .....++
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~----~~~~~it 311 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG----LSPIGIT 311 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc----cCCCCCC
Confidence 345788888999999999999999999999999999999999999999999999998888775322110 0000111
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 482 ------HYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 482 ------~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
-+.|+.-|++.+++.++..+.++++-+++++.
T Consensus 312 ~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 312 PTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 13455568888999998888888887776643
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=55.12 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhH-HhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGG-FLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G-~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
++++..+.++..+.......++.++.. .+.-. +|-|+++..|++...++.++.+++++
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~~-------------------- 330 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFATE-------------------- 330 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhcc--------------------
Confidence 578999999999999999999998888 77777 69999999999999999999999863
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 150 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l 150 (517)
.++.+.+.++.+ ..+...|+..++++.+.++++ +++++++.+....+...++|.+-+.+
T Consensus 331 -----~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 331 -----TWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred -----chhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 345666655544 456779999999999999888 99999999999999999999887666
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=41.21 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=52.2
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQA 58 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~ 58 (517)
++|.++++|+-+.-.+|+.++.+...++.++. .+++.+..++++..+..+.+++..
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999994 889999999999999999999875
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.32 Score=52.44 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=83.8
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHH--HHHHHHHHHH-HHHhhhccCCCCCCcccccCCCccc
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVIS--AAIEFMGLLL-LTVQAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~--~~l~~ig~~l-~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
|-+..+.+.+++.|..+..+|..++|+++++- -|+ -..+- +.+.+..+.. +..+.....
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~---------------- 107 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAG-FVAVELLLALLGGLSALILYAAFAFQG---------------- 107 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 55667779999999999999999999988552 222 22222 2122211111 111110000
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCc-
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGW- 156 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~-~~gw- 156 (517)
.....++...++.++-.|+..|....+..+... ++ -++..+-.|....+|+++|.++.+++-- .+|-
T Consensus 108 ----~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 108 ----LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 011123344455677777777777766654322 11 4566788899999999999999887743 5564
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 010145 157 QWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~ 176 (517)
+..+.++.+-.+++++.++.
T Consensus 177 ~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 177 RTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555554444445444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.2 Score=52.04 Aligned_cols=168 Identities=13% Similarity=0.027 Sum_probs=114.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCC
Q 010145 276 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 355 (517)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~ 355 (517)
+++++...+.+...+.|....++.+.+.++ ....++. .+......++..++..|+.+...|+.-.|.+||+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR-- 102 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR-- 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------ccccccccccccceeccccccccccccccccccc--
Confidence 456677777888888888888888766543 4555543 2345667778888889999999998888877653
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchh
Q 010145 356 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 435 (517)
Q Consensus 356 ~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~ 435 (517)
| -+.++..+.+++++..++..+......+.+.. ...+......++.+.+.=++.-....+.=++..+.+...
T Consensus 103 P----fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~----~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d 174 (498)
T KOG0637|consen 103 P----FILAGSLLIAVSLFLIGYAADIGLLLGDNERK----PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD 174 (498)
T ss_pred c----hHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc----ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh
Confidence 2 27788888888888888775443332222110 022334445555555666665455555558888887666
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHH
Q 010145 436 MRSL-ATSLSWASLAMGYYFSTVLVS 460 (517)
Q Consensus 436 ~rg~-~~gi~~~~~~ig~~l~~~~~~ 460 (517)
.+-+ +.+...+.-++|+.+|-.+.+
T Consensus 175 ~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 175 AKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhccchhHHHHHHhcceeeeeccc
Confidence 6777 999999999999998877765
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.33 Score=50.34 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010145 405 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNI 465 (517)
Q Consensus 405 ~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~ 465 (517)
.......+.+.++.+......-......|+++|+.+..+..+.+.+|..++..+.+++.+.
T Consensus 142 l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 142 LTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 4445556667777766555434555567999999999999999999999999988887743
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.47 Score=45.91 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhh
Q 010145 357 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 436 (517)
Q Consensus 357 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 436 (517)
.+...+.+|.++..++..+.......+ -...+.|.+.+...+.+.+.+..+.+......+..|+ .
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 455567888888888887776553111 1123555565555667778777777777778889996 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 437 RSLATSLSWASLAMGYYFSTVLVSIVN 463 (517)
Q Consensus 437 rg~~~gi~~~~~~ig~~l~~~~~~~~~ 463 (517)
||++.|+.-....+++.+-+.+...+.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 999999999999999988777776665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.15 Score=53.59 Aligned_cols=136 Identities=11% Similarity=0.037 Sum_probs=101.0
Q ss_pred HHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHH
Q 010145 332 LILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYL 411 (517)
Q Consensus 332 ~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 411 (517)
-....+.+++.||+..+ ++-+..|.++++++-++.+.-. ..+...+.+..+
T Consensus 75 Y~t~i~GG~laDr~LG~----------~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~ 125 (498)
T COG3104 75 YLTPIIGGWLADRVLGT----------RRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLA 125 (498)
T ss_pred HHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHH
Confidence 33444556677666643 2338999999999998887631 023456777888
Q ss_pred HHHHHHHHHhhhhHHHhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHH
Q 010145 412 FLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFY 489 (517)
Q Consensus 412 l~g~~~~~~~~~~~~~~~~~~P~~~--rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 489 (517)
++++|.+..=|...++..+..|++. |..+.++.+..-++|+++++.+.+.+.. +.+|+.-|
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~-----------------~~g~~~gF 188 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI-----------------NYGWHVGF 188 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH-----------------hhCHHHHH
Confidence 8889999988888888888775443 5667788888888999999999988862 25678889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 010145 490 WLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 490 ~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
-+.++-.+.+++.++...++.+..
T Consensus 189 ~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 189 GLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred HHHHHHHHHHHHHHHHccchhcCC
Confidence 998888888888888877776644
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.77 Score=48.39 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhccc---chhhH
Q 010145 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA---PLSMR 437 (517)
Q Consensus 361 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~---P~~~r 437 (517)
.+.+|.++.+++.+.++.... ...+.......+.+..+|..+.....-+...|.+ |++ +
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~ 122 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R 122 (433)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence 366677666665655555420 1123334445556677777777777766666654 545 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 438 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 438 g~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
|.-.+..+..+.+|+.++..+.+.+.+. .+++..|++.+++.++..+..+++..+
T Consensus 123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~-----------------~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 123 GDLQSFVWGVRSVGSLVGSLLSGPLLDS-----------------FGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc-----------------CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 8889999999999999999988776532 223446777777777776655655554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.045 Score=56.61 Aligned_cols=120 Identities=12% Similarity=0.249 Sum_probs=85.9
Q ss_pred HHHHhhhhhHHhhccc---CcchHHHHHHHHHH-HHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHH
Q 010145 18 TAFLLALFGGFLADAF---FTTYRIYVISAAIE-FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLY 93 (517)
Q Consensus 18 ~~~l~~l~~G~laDr~---~Grk~~l~~~~~l~-~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 93 (517)
...+.+|+.|..+||. |||||-++....+. .++-++...++.+...+.+.- .+-.+......++++-.
T Consensus 79 ~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~--------~~~~~~rai~~~~lg~~ 150 (498)
T KOG0637|consen 79 SGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE--------RKPVKPRAIVLFILGFW 150 (498)
T ss_pred ccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc--------ccccchHHHHHHHHHhH
Confidence 3456778999999974 79999887755544 457777777776554332110 00023345667777777
Q ss_pred HHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 94 IVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 150 (517)
Q Consensus 94 l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l 150 (517)
+.=++.-..+...-++.+|.+.+.+. +.++.+++...+.+|..+|+.+++++
T Consensus 151 LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 151 LLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhcceeeeeccccc
Confidence 88888888899999999999986651 22299999999999999999888755
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.41 E-value=7.7 Score=34.61 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 463 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~ 463 (517)
+.+.+++.-++.|++..+.-.+.-.++.+...++.+++..++.+....++.++|..+...+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999977777789999999999999999999999999999888877665
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.05 E-value=7.6 Score=39.29 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred hhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhHHHHHHHHHHHHhccc
Q 010145 22 LALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGG 101 (517)
Q Consensus 22 ~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 101 (517)
.-++.=.++|.. =.|++++.-.+-.....+++-+..+.. .+=+.-+..|...+.
T Consensus 58 ~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~sV~-------------------------~mQvlE~FyG~~tAa 111 (433)
T KOG3810|consen 58 GLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPSVK-------------------------AMQVLEFFYGPATAA 111 (433)
T ss_pred HHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCCch-------------------------heeeehhhcChHHHH
Confidence 344555678974 556666655555555556665554322 122222233332222
Q ss_pred ccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--ccCchhhHHHHHHHHHHHHHHHHh
Q 010145 102 IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED--NKGWQWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 102 ~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~--~~gw~~~f~i~~~~~~~~l~~~~~ 176 (517)
..+.++|+-...+|++ +.++.++-..+.-.|...|..++-.+.. +.++...=.|+...+.++.+.-++
T Consensus 112 -EIAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f 181 (433)
T KOG3810|consen 112 -EIAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF 181 (433)
T ss_pred -HHhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh
Confidence 3444555555555554 8899999999999999988888777754 334444444666666655554433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=90.45 E-value=16 Score=35.39 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh-----ccccCchhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 124 QRSAFFNYYVFCLSCGALIAVTFVVWI-----EDNKGWQWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 124 ~r~~~~~~~~~~~~lG~~ig~~i~g~l-----~~~~gw~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
+|+.......++-|+|+++.-...-.- ...-.|++++.+.+.+.++-++.+.+..++
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 377777777888899988764332111 112369999998888777666665554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.4 Score=44.70 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhh----HHh---hcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 13 TNFMGTAFLLALFG----GFL---ADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 13 s~f~~~~~l~~l~~----G~l---aDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
..+.++..++..++ +.+ .++ +||++++.++..+..++.++.-++....+-+.|+ .....+.+.++
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-------~~~~~~~~~~~ 353 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-------DSPPLLFTPSY 353 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccccccCCCCCC-------cccccccccch
Confidence 34444444444443 333 466 5999999999999999999988764211111111 12223344456
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 148 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g 148 (517)
....+.-++.|++-+......+.++++.+| ++ |..+++++-+-..+++.++.+..+
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 666777789999999999999999999994 44 778888887777777776654444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=88.03 E-value=3 Score=43.23 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 84 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 151 (517)
Q Consensus 84 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~ 151 (517)
+.+..++.-+..|+-+|+.+.+....+.|..|+++ |+..++...++-++|..++.+++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777788888999999999999999999888776 999999999999999999988876654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=86.18 E-value=52 Score=35.27 Aligned_cols=136 Identities=8% Similarity=0.004 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHH-HHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCcccccCCCcccCCCCc
Q 010145 6 SSSANIVTNFMGTA-FLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAH-TRSLKPPTCVLEDGIASCREDEGG 83 (517)
Q Consensus 6 ~~~~~i~s~f~~~~-~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (517)
+....+.....+.+ .+...+-.+++|++ +|.+++.+....+..-.++.++--- ....+.|+-.- + ......+.
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~-~---~~~~~~~~ 132 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFA-D---KLLAILPP 132 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHH-H---Hhhhhccc
Confidence 34455555555533 44578889999995 9999999877766665555554210 00111121100 0 00000011
Q ss_pred hhH---------HHHHHHHHHHHhcccccc-cchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 84 KAV---------MLFAGLYIVALGVGGIKG-SLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 152 (517)
Q Consensus 84 ~~~---------~l~~~r~l~G~g~g~~~~-~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~ 152 (517)
+.. .+.+.-+..-+=.....+ .--.+..|.++.+| -.|.++.+..+.|+|.+++.....++.+
T Consensus 133 ~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 133 GFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111111111111122 33567788888777 8899999999999999999988877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=86.11 E-value=52 Score=35.17 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010145 402 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVS 460 (517)
Q Consensus 402 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~ 460 (517)
-+..++..+++..+.....+.+.+++-.+++++..-|++|-+.|+..++|+.--..++-
T Consensus 404 Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL 462 (544)
T PF13000_consen 404 YFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL 462 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence 34567778888889888999999999999999999999999999999999876554443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.71 E-value=7.3 Score=37.97 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhcccCcchHH---HHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchh
Q 010145 9 ANIVTNFMGTAFLLALFGGFLADAFFTTYRI---YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 85 (517)
Q Consensus 9 ~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~---l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (517)
|.+.+.|+.++.++.-+..++..|- |.|+ +.+...+..... ++.+-++..+ |. + .+.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l-~Lpilt~~vs---P~----------k----es~ 344 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAAL-LLPILTSSVS---PS----------K----ESP 344 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHH-HHHHHHhccC---CC----------c----CCc
Confidence 8899999999999988888887773 4433 344333333332 2222221111 11 0 133
Q ss_pred HHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 010145 86 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 165 (517)
Q Consensus 86 ~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~ 165 (517)
..-+++-.+.-.+.|.++|..+.+=++..|+++ |...++++..-.|+=.-++-.---.=..-.+-|..|.++.+
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 344667777888999999999999999999887 99999999987775444322110000012356788999888
Q ss_pred HHHHHHHH
Q 010145 166 TILLSIPI 173 (517)
Q Consensus 166 ~~~~~l~~ 173 (517)
+..++.+.
T Consensus 419 ~~~~a~i~ 426 (454)
T KOG4332|consen 419 FLFVASIL 426 (454)
T ss_pred HHHHHHHH
Confidence 87766544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=81.02 E-value=64 Score=34.37 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHH-HhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCc--ch
Q 010145 408 LQYLFLGSADLF-TLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH--YH 484 (517)
Q Consensus 408 ~~~~l~g~~~~~-~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 484 (517)
+.|+...+-... ..-..+.++.|....++..+.-++.....++|..+|+.+...+.+... .++. ..+. ..
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~------~~~~-~~~~~~~~ 205 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRA------SLGP-GVDGWHVS 205 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cccc-ccChHHHH
Confidence 344444443333 334778999999999999999999999999999999999887764321 1111 1111 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 010145 485 LERFYWLMCILGGLNFLHFLFWAA 508 (517)
Q Consensus 485 ~~~~f~~~~~l~lv~~~~~~~~~~ 508 (517)
..+.+.+.+++.++.+.+++++.+
T Consensus 206 ~~~l~~i~~~~~~~~~~~~~~l~~ 229 (472)
T TIGR00769 206 LKNLMVIVICSGLAIILLYWWVNR 229 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223445555566666666665543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=80.69 E-value=18 Score=38.11 Aligned_cols=125 Identities=17% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|+|+...|..=+.=.+....+.+...++-+|+ |.-|+=.+++........++..+--.+. .| ..
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~--~~-------------~~ 352 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG--SP-------------FS 352 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC--CC-------------ch
Confidence 45666666666666677777889999999995 9999999998887766666655432221 00 02
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 148 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g 148 (517)
..+...|+.+-++.=+|-=++--+..-++.|..|+++ |+.+.+......|+--++....+-
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777778888888999999999999887 999999999999988887776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.54 E-value=81 Score=33.25 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010145 403 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 462 (517)
Q Consensus 403 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~ 462 (517)
-++.++..++.|+..|......+.+..+.+++++|-.+..+..+.-.+|-.+|..+.-.+
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678899999998888889999999999999999999998889988888875544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 517 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = 3e-98
Identities = 85/512 (16%), Positives = 187/512 (36%), Gaps = 52/512 (10%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
+ + ++ +F+ + L GG++AD FF Y + + I +G L + H+
Sbjct: 49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS 108
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
+ GL+++ALG GGIK ++ +Q+D++
Sbjct: 109 VQ------------------------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQS--- 141
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
+ F+ + F ++ G+ A + + N G FGI + ++ F LG
Sbjct: 142 NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201
Query: 181 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240
Y + P V+ +A+ + K + V + + + + + +
Sbjct: 202 YIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGL 261
Query: 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 300
+ F+ V+ V+ V++I +F Q ++
Sbjct: 262 -CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKAS 320
Query: 301 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 360
+ QA M + PA + + +++L P N V+ P ++ +T L+
Sbjct: 321 TWILQANDM---VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALR 374
Query: 361 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 420
++G G+ ++ ++ V +++ ++ W L Y L ++
Sbjct: 375 KMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLV 422
Query: 421 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480
A +EF ++ AP +M+ S S+ +G + + V + T T + + +
Sbjct: 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGM 478
Query: 481 NHYHLERFYWLMCILGGLNFLHFLFWAARYKY 512
+ + F++ L + F +A Y+
Sbjct: 479 SVTAFQMFFFA--GFAILAAIVFALYARSYQM 508
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 33/185 (17%), Positives = 73/185 (39%), Gaps = 29/185 (15%)
Query: 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 60
+H + +++A+I+ + +L GGF+AD + +G ++L +
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107
Query: 61 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 120
A LF + ++ +G G +K +++ YDE
Sbjct: 108 ------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDE---- 139
Query: 121 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 180
++R A F+ +VF ++ GA IA V ++ G+ F ++ + + + ++ G
Sbjct: 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199
Query: 181 YRNKI 185
+
Sbjct: 200 TLDPH 204
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 70/525 (13%), Positives = 139/525 (26%), Gaps = 182/525 (34%)
Query: 112 EQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV-WIEDNKGWQWGFGISTATILLS 170
E+ D ++ + FV + N + I T S
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPS 106
Query: 171 IPIFLLGSPFYRNKIPTGSPLTTIFKV--------LTAAIFN------------------ 204
+ + R+++ + + + V L A+
Sbjct: 107 MMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 205 -----TCKSK------------------NSSNAVTE----VHSSPTCSNESRDEGNSNVK 237
C S NS V E + + SR + +SN+K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 238 EKVPSQKPTEDIK-FLNRALRNNPAYP---IV---------------QCTV------KEV 272
I+ L R L++ P Y +V C + K+V
Sbjct: 225 L------RIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 273 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM-----NTKLGSLKVPPASLPVFP 327
+ I + T + + ++ + + L P L P
Sbjct: 278 TDFLSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNP 327
Query: 328 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 387
+I + + + A + + + + +I+ ++ L + +++
Sbjct: 328 RRLSIIAESIRDGL----AT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 388 VNSGLVNSSEPLP---ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 444
+ S +P ++ +W + +D + + L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIK-------------------SDVMVVVNKLHKY-- 414
Query: 445 WASLA-----------MGYYFSTVLV---------SIVN--NITSTYRH----TPWLFGS 478
SL Y + SIV+ NI T+ P+L
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 479 NLNH--YHL------ERFYWLMCILGGLNFLHFLFWAARYKYSST 515
+H +HL ER + FL F F + ++ ST
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDST 512
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 517 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.79 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.09 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.92 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.78 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.57 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.19 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=257.05 Aligned_cols=407 Identities=17% Similarity=0.281 Sum_probs=274.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcc-cCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADA-FFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr-~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..+++++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++++++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~--------------------- 106 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF--------------------- 106 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC---------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 57899999999999999999999999999999 6 999999999999999999998874
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+++.++++|+++|+|.|...|+..++++|++|+++. +|+.++++++...++|..++|.+++++.+..+||++
T Consensus 107 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 107 ----GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp ----STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455799999999999999999999999999997652 377889999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccc---CCCCC-chhHHHHHHHH-------------HHHhhccCCCCCCcccccccCC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNK---IPTGS-PLTTIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSP 222 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~ 222 (517)
|++.++..+++++.+++..+++..+ +++++ +.++..+.... .....+ ..
T Consensus 179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--~~------------ 244 (491)
T 4aps_A 179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG--WN------------ 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS--SC------------
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc--Cc------------
Confidence 9998877776666555443322221 11111 11111110000 000000 00
Q ss_pred CCCCCCCcCCCCcccCCCCCCCCCchhHHHHHhhhcCC----CCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 010145 223 TCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNP----AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298 (517)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (517)
+..+............+ ...|+. ......++++.....+++....+++..+.+.
T Consensus 245 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4aps_A 245 ---------------------SLPAYINLLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQG 302 (491)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGG
T ss_pred ---------------------ccccchhhhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000000000000000 000000 0001123344444556666677777777777
Q ss_pred hhHHHHHHHH-hccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHH
Q 010145 299 STFSVQQAAT-MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAA 377 (517)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~ 377 (517)
...+..+... .+.. ..+.+.+..++.+..++..++.+++.+++.||. .....++..|.++.++++++..
T Consensus 303 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 303 SVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp GTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTH
T ss_pred cHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHH
Confidence 7655444322 2221 134556778888888888888888887776653 3556777889998888887776
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010145 378 LVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTV 457 (517)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~ 457 (517)
...... +...+.+.+++++.+++.+++++...+..++++.|..|++.||+++|+.+....+|..+++.
T Consensus 373 ~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 373 IPGALY------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHC------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHhc------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653110 01123466778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 458 LVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
+.+.+.+ .++...|++.++++++..++.++..++.+++
T Consensus 441 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNA------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGG------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhc------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777642 2345578888888888877777666555543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=264.25 Aligned_cols=435 Identities=20% Similarity=0.346 Sum_probs=265.2
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-cchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
.|..+++++.+.+.++..++.+++|+++|| + |||+++.++.++.+++.++++++. .
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~--~-------------------- 107 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFE--H-------------------- 107 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTS--S--------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhc--c--------------------
Confidence 899999999999999999999999999999 7 999999999999999999998874 0
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+.+.++++|++.|+|.|...|+..+++.|++|+++ |+++...+++.+.+.++|..++|.+++++.+..+||+.|+
T Consensus 108 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 182 (524)
T 2xut_A 108 --SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG 182 (524)
T ss_dssp --CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred --cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45679999999999999999999999999999876 2223556667999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCccc-------ccccCCCCCCCCCcCCCC
Q 010145 162 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVT-------EVHSSPTCSNESRDEGNS 234 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~ 234 (517)
+.++..+++.+.+++..++.+++++++++..+..+.+....++++.+.+...... ... +.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 250 (524)
T 2xut_A 183 IPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAY-------ALV----- 250 (524)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHH-------TGG-----
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhh-------hhc-----
Confidence 9888777766666555444333222222111111111111111100000000000 000 000
Q ss_pred cccCCCCCCC--------------CCchhHH--HHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 010145 235 NVKEKVPSQK--------------PTEDIKF--LNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298 (517)
Q Consensus 235 ~~~~~~~~l~--------------~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (517)
...... ...+..| +++.+. ...++...++|+++....++.....++..+.+.
T Consensus 251 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (524)
T 2xut_A 251 ----NIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK--------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQK 318 (524)
T ss_dssp ----GTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCC--------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSST
T ss_pred ----ccchhhhhhhhhhhhhhhhcccccchhhHHhhhhc--------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000000 0000001 110000 001111223344555555556666666777777
Q ss_pred hhHHHHHHHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHH
Q 010145 299 STFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAAL 378 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~ 378 (517)
.+.+..+...++... + .+.+.+..++.+..++..++.+++..+..+|+.+| .....++.+|+++.++++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 392 (524)
T 2xut_A 319 ASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGT 392 (524)
T ss_dssp TTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTT
T ss_pred chhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHH
Confidence 776655544443321 0 12334556666777777777777665555554333 45566777888888887776654
Q ss_pred HHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010145 379 VEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVL 458 (517)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~ 458 (517)
.... . +.....+.+++++.+++.+++++...+..++++.+.+|++.||+++|+.++...+|+.+++.+
T Consensus 393 ~~~~----------~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~ 460 (524)
T 2xut_A 393 IQLM----------M--DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLA 460 (524)
T ss_dssp TTTT----------T--TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHH
T ss_pred HHHH----------h--cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3100 0 001134667788889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 459 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
.+.+...+. .+|.++.+. +...+.|++.+++++++.++++++.++++++
T Consensus 461 ~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 461 NVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp HHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 988753210 012110000 0012337888888888888777776666544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=234.25 Aligned_cols=370 Identities=8% Similarity=-0.037 Sum_probs=233.8
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHH----hhhccCCCCCCcccccCCCccc
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV----QAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~----a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
.|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++ +.
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 117 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------------------- 117 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc--------------------
Confidence 5788999999999999999999999999995 9999999999999999999998 64
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-ch
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~ 157 (517)
+++.++++|+++|+|.|...++..+++.|++|+++ |++++++...+.++|.+++|.+++++.+..+ ||
T Consensus 118 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 118 -----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp -----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred -----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 45579999999999999999999999999999877 9999999999999999999999999888888 99
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
+.|++.++..++..+..++..++.+......+. + +. +.++++ +.
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~--------------~~~~~~---~~ 230 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------------EY--------------KNDYPD---DY 230 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------------TT--------------CCC--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------------hh--------------cccccc---cc
Confidence 999998877665554443333321111100000 0 00 000000 00
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
++ ...++. .++....++....+.++.. .+...+.+.......... ..+++...+...
T Consensus 231 ~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~ 287 (451)
T 1pw4_A 231 NE-KAEQEL----------------TAKQIFMQYVLPNKLLWYI---AIANVFVYLLRYGILDWS---PTYLKEVKHFAL 287 (451)
T ss_dssp -------------------------CCTHHHHHHTSSCHHHHHH---HHHHHHHHHHHHHHHHHH---HHHBTTBSCCCH
T ss_pred hh-hhhccc----------------ccccchHHHHHcCHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHhcCCCH
Confidence 00 000000 0000000000001222211 111111112222222221 223332221000
Q ss_pred eCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 318 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
...+.+.....+..++..++..++.+++.+ +.+..+..+.++.+ ++++.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----------------- 341 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN----------------- 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-----------------
Confidence 111123333444444555555555544410 11222444444443 444333321
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWL 475 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g~~l~~~~~~~~~~~~~~~~~~~~~ 475 (517)
...+.+.+....++.|++.....+....+..+..|++.||+++|+.+....+ |..+++.+.+.+.+.
T Consensus 342 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---------- 409 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---------- 409 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------
T ss_pred --cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 1124556667777888888888888889999999999999999999999999 999999999887632
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010145 476 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 508 (517)
Q Consensus 476 ~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~ 508 (517)
.+++..|++.+++.+++.++.++..+
T Consensus 410 -------~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 410 -------FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp -------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24577888888888888776666543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=237.83 Aligned_cols=411 Identities=14% Similarity=0.116 Sum_probs=231.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
+.+.+++++++.+|..++++++|+++||+ |||+++.++.+++++++++++++........+. ......-..+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-------~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-------hHHHHHHhhh
Confidence 45678999999999999999999999995 999999999999999999999653211000000 0000001126
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccCc
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED--------NKGW 156 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~--------~~gw 156 (517)
+++++++|+++|+|.|+..++.+.+++|..|+++ |++..++...+..+|.++++.++..+.. ..+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999887 9999999999999999999988776643 2457
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcc
Q 010145 157 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 236 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (517)
|+.+.+..+..++.++..++. |+-++.-..+.+.++..+.+.+...+..... +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~-------~~------------------ 253 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTV-PESPRWLMSRGKQEQAEGILRKIMGNTLATQ-------AV------------------ 253 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGS-CCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------HH------------------
T ss_pred HHHhhhhhhhhhhhhhhhhcC-CCChHHHHHcCchhHHHHhHHHhcCCchhHH-------HH------------------
Confidence 777776666555444333222 2111100011222222222222111110000 00
Q ss_pred cCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCe
Q 010145 237 KEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 316 (517)
Q Consensus 237 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (517)
.+.....++.+.. . .......+++.........++..... +....+. .......+..
T Consensus 254 ---------~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~ 310 (491)
T 4gc0_A 254 ---------QEIKHSLDHGRKT----G----GRLLMFGVGVIVIGVMLSIFQQFVGI-----NVVLYYA-PEVFKTLGAS 310 (491)
T ss_dssp ---------HHHHHHHHHHHHH----T----THHHHSCCTHHHHHHHHHHHHHHTCH-----HHHHHHH-HHHHHHSSCC
T ss_pred ---------HHHHHHHHhhhhh----h----hHHHHhcccHHHHHHHHHHHHHHhhh-----hHHHhcc-hHHHHhcCCC
Confidence 0000000000000 0 00000001111111111111111111 1111011 1111111100
Q ss_pred eeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 317 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 317 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
.........+..+..++...+...+.|++.||. .+..+...++++++..+.....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~-------------- 365 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT-------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc--------------
Confidence 000111122333344444455555566555542 3566777777776665544210
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF 476 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (517)
.......++..+++.........|..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+.. |.
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~- 435 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL- 435 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH-
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-
Confidence 11122222222233333333345667789999999999999999999999999999998888765321 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 010145 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516 (517)
Q Consensus 477 ~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~~ 516 (517)
....+....|++++++++++.+..+++.++.|.|+.|
T Consensus 436 ---~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 436 ---VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred ---HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 0012334578899999999999888999999888643
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-24 Score=219.75 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=126.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHH---HHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL---TVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~---~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++ +.++
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~------------------- 115 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM------------------- 115 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc-------------------
Confidence 588999999999999999999999999999995 99999999999999999999 5543
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cccC-
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG- 155 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~-~~~g- 155 (517)
+++.++++|++.|+|.|...++..++++|++|+++ |++.+++...+.++|..++|.+++++. +..+
T Consensus 116 ------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 116 ------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred ------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 67789999999999999999999999999999887 999999999999999999999999997 5544
Q ss_pred ------------------------chhhHHHHHHHHHHHHHHH
Q 010145 156 ------------------------WQWGFGISTATILLSIPIF 174 (517)
Q Consensus 156 ------------------------w~~~f~i~~~~~~~~l~~~ 174 (517)
||+.|++.+...++..+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999987665555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-23 Score=208.56 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++.++..+.+++.++.++++
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 86 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS---------------------- 86 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH----------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc----------------------
Confidence 578999999999999999999999999999995 999999999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..++|.+++++.+..+||+.|
T Consensus 87 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence 56789999999999999999999999999999887 999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHH
Q 010145 161 GISTATILLSI 171 (517)
Q Consensus 161 ~i~~~~~~~~l 171 (517)
++.++..++..
T Consensus 158 ~~~~~~~~~~~ 168 (375)
T 2gfp_A 158 LFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98776655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-20 Score=189.22 Aligned_cols=362 Identities=10% Similarity=0.026 Sum_probs=202.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHH---HHHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL---LTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l---~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.|..+++++.+.+.++..++++++|+++||+ ||||++.++..+++++... .+.+....
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------- 100 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQ---------------- 100 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHHHH----------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 478999999999999999999999999999995 9999999998887653221 12221100
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
..++.++++.+++.|...+...+.+.++.++.. ++|+..++......++|..++|.+++++.+ .+||
T Consensus 101 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~ 167 (417)
T 2cfq_A 101 --------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ 167 (417)
T ss_dssp --------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred --------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 013456666666666666555555555543221 136777778877889999999999999976 6899
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
+.|++.++..++.++..+...++ +++..+ +.++ .
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------------~~~~-----~- 201 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTD----APSSAT------------------------------------VANA-----V- 201 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------------------------SSSS-----S-
T ss_pred HHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------------------------cccc-----c-
Confidence 99997655533332222111111 100000 0000 0
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
+ ...++....++.+. ..+ +.++............+..+.+....+.. ...+.. +
T Consensus 202 -~-~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~ 255 (417)
T 2cfq_A 202 -G-ANHSAFSLKLALEL-----------------FRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFFT--SFFATG----E 255 (417)
T ss_dssp -S-SCCCCCCHHHHHHH-----------------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSSSH----H
T ss_pred -c-cccccccHHHHHHH-----------------hcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc----C
Confidence 0 00000000011100 011 11221111111111112222222111111 111100 0
Q ss_pred eCC---CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010145 318 VPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 394 (517)
Q Consensus 318 ~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 394 (517)
... +....++.+..++...+..++.||+.+| +.+..+.++.+++++..+..
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~--------------- 309 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA--------------- 309 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------
Confidence 001 1122233333344444555555544433 23556666666655444321
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 010145 395 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTP 473 (517)
Q Consensus 395 ~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 473 (517)
.+.+.++....+.+++.....+....+..|..|++.||++.++ .+..+.+|+.+++.+.+.+.+
T Consensus 310 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--------- 374 (417)
T 2cfq_A 310 ------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--------- 374 (417)
T ss_dssp ------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---------
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---------
Confidence 1334455555566777666667777899999999999999999 488889999999999987652
Q ss_pred CccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 474 WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
..+++..|++.+++++++.++.++..++.++.
T Consensus 375 --------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 375 --------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp --------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred --------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 13456778888888888877766655554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=117.08 Aligned_cols=146 Identities=13% Similarity=0.161 Sum_probs=124.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC--cchHHHHHHHHHHH-HHHHHHHHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF--TTYRIYVISAAIEF-MGLLLLTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~--Grk~~l~~~~~l~~-ig~~l~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.+..+++++.+.+.++..++.++.|+++|| + |||+.+.++..+.. ++.++..+..+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 343 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPA------------------ 343 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCT------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 47888999999999999999999999999999 8 99999988887777 55555444311
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCc
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw 156 (517)
.+.+.+.+..++.|++.+...+....++.|.+|+++ |++++++.....++ |..++|.+.|++.+..||
T Consensus 344 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 344 -----GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp -----TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred -----cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 145667788889999999999999999999999887 99999999999999 999999999999998999
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 010145 157 QWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~ 176 (517)
+..|++.++..+++.+..++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888777766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=113.21 Aligned_cols=138 Identities=8% Similarity=0.012 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
+.+++.+...++..++.+++|+++||+ |||+++..+..+.+++.++.+++. +.+
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~-------------------------~~~ 313 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------------SAL 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-------------------------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-------------------------cHH
Confidence 346666666677888899999999995 999999999888888766665542 345
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 165 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~ 165 (517)
.+++..++.+++.+...+....++.|.+|++. |+...++ +....++|..++|.++|++.+..|++..|.+.++
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 67777778888888777888899999999876 8998888 4777789999999999999888889999998777
Q ss_pred HHHHHHHHHHh
Q 010145 166 TILLSIPIFLL 176 (517)
Q Consensus 166 ~~~~~l~~~~~ 176 (517)
..+++.+..+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 76666655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-09 Score=107.09 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=111.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+++++.+.+.++..++.+++|+++|| +|||+.+.++..+.+++.++....+
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 346 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG---------------------- 346 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 47899999999999999999999999999999 5999999999999988888877753
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+.. ..+.-++.|++.+...|...++..|.+|++ |+...++.. ...+|..++|.+.|++.+..| ++..
T Consensus 347 ---~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 347 ---GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp ---HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred ---CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 222 334447899999999999999999988843 444445444 566999999999999999888 9999
Q ss_pred HHHHHHHHHHHH
Q 010145 160 FGISTATILLSI 171 (517)
Q Consensus 160 f~i~~~~~~~~l 171 (517)
|.+..+..++.+
T Consensus 415 ~~~~~~~~~~~~ 426 (438)
T 3o7q_A 415 ELIPALCFAVIF 426 (438)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998765544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=106.99 Aligned_cols=155 Identities=12% Similarity=0.016 Sum_probs=116.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHH-----HHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-----ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~-----~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+.+..+.+++.+...++..++.++.|++.||+ |||+... .+..+.+++.++.+.......
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 379 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-------------- 379 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC--------------
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence 34445678888888899999999999999995 9987655 777777777777666431110
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+...+.+.+.+.-++.|+|.+...|....++.|.+|+++ |+.+.++.+...++|..++|.+.+++.+ .++
T Consensus 380 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~ 450 (491)
T 4aps_A 380 --TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSE 450 (491)
T ss_dssp --CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SST
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccH
Confidence 0112255677788899999999999999999999999888 9999999999999999999999998876 577
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 157 QWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
...|.+.+...+++.+..++..++
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887766666655555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.8e-07 Score=92.63 Aligned_cols=150 Identities=12% Similarity=0.007 Sum_probs=106.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+..+.........+...++.++++++.||+ |||+.++.+....+++.+.++.......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------------------- 367 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-------------------- 367 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc--------------------
Confidence 4455556666667788888999999999995 9999999999999988877766532111
Q ss_pred chhHHHH-HHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------ccC
Q 010145 83 GKAVMLF-AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NKG 155 (517)
Q Consensus 83 ~~~~~l~-~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~------~~g 155 (517)
.....+. ...+..+++ ....|....+.+|.+|.+. |+.+.++.....++|..+++.+.+.+.+ ..+
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1222222 222223333 3345677889999999887 9999999999999999999988777643 245
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 156 WQWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 156 w~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
+...|++.+++.+++.+..++..|+
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecC
Confidence 6677887777776666655554444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=87.16 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=104.5
Q ss_pred cCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccc
Q 010145 323 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 402 (517)
Q Consensus 323 ~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (517)
......+...+..++..++.||+.||+. +..+.++.+++.+..... .+
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~-----------~~~~~~~~~~~~~~~~~~---------------------~~ 87 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPV-----------ILVGMSIFMLATLVAVTT---------------------SS 87 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCC-----------CHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchh-----------HHHHHHHHHHHHHHHHHh---------------------cc
Confidence 4455566666777777777777665532 567777777777766654 25
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCc
Q 010145 403 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 482 (517)
Q Consensus 403 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (517)
.+.++...++.|++.+...+....++.|..|++.|++++++.+....+|..+++.+.+.+.+ .
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----------------~ 150 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-----------------M 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-----------------H
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------h
Confidence 56777788899999999999999999999999999999999999999999999999887641 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 483 YHLERFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 483 ~~~~~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
.+|+..|++.+++.++..+..++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 467888888888877776544444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.2e-06 Score=87.61 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=96.4
Q ss_pred CchhHHHHHHHhhhhhhhhhc-ccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 010145 325 VFPVIFILILAPVYNHVIIPF-ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 403 (517)
Q Consensus 325 ~~~~~~~~i~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (517)
....+...+..++..++.|++ .|| +.+.++.++.+++.++.... +.+.
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 109 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF--------------------EHSV 109 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------cccH
Confidence 334444455555556666555 433 33677777777777766653 1256
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
+.+++..++.|++.+...|...+++.|..|++.|++.+++ .+....+|..+++.+.+.+.+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------------- 173 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------------- 173 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH----------------
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 6777788899999999999999999999999999877666 888888898888888776642
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 481 NHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
..+|+..|++.+++.++..+.+++..
T Consensus 174 -~~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 174 -NFGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13568888888888777766554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 517 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.83 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.5e-26 Score=233.43 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=130.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.+|.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.++++++.....
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 114 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------------------ 114 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------------------
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh------------------
Confidence 478999999999999999999999999999995 9999999999999999999988754332
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-cCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~gw~~~ 159 (517)
+++.+++.|++.|++.|...++...+++|++|+++ |++++++...+.++|..++|.+++.+... .+||+.
T Consensus 115 ---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~ 185 (447)
T d1pw4a_ 115 ---SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 185 (447)
T ss_dssp ---SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred ---hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 46689999999999999999999999999999887 99999999999999999999988876553 489999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 010145 160 FGISTATILLSIPIFLLGS 178 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~ 178 (517)
|++.+...++..+..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhHHHHHHHHHHhc
Confidence 9987776655544444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.4e-20 Score=188.53 Aligned_cols=363 Identities=9% Similarity=0.010 Sum_probs=210.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.+|+|++.+++.++..+++++.|+++||+ ||||+++++..+..++.++.....+.+.
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~------------------ 98 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL------------------ 98 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHTHHHH------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhhhhhh------------------
Confidence 378999999999999999999999999999995 9999999999999999888887643221
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
.....++.+.+.+.+.+...+.......+..+++ .+++.+..+........+..++|.+++++.+ .+|+..+
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 170 (417)
T d1pv7a_ 99 ---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp ---HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred ---HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHHhhhhcccccccccccccccc-ccccccc
Confidence 1223445555555555555555554444433322 2236667778888889999999999999876 4666666
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
.+......+..+...+..++.+..++++++ ++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--------------------------------- 204 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGAN--------------------------------- 204 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSC---------------------------------
T ss_pred cchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhh---------------------------------
Confidence 655444443333333333221111110000 0000
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 320 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
.+........+ .. .+ +..................... ..... ............
T Consensus 205 --~~~~~~~~~~~-~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~ 258 (417)
T d1pv7a_ 205 --HSAFSLKLALE-LF----------------RQ-PKLWFLSLYVIGVSCTYDVFDQ---QFANF---FTSFFATGEQGT 258 (417)
T ss_dssp --CCCCCHHHHHH-HT----------------TS-SHHHHHHHHHHHHHHHHHHHHH---HHHHH---HTTSSSCHHHHH
T ss_pred --ccccccccccc-cc----------------cc-ccccchhhhhHHHHHHHHhhhc---ccccc---ccccccccccch
Confidence 00000000000 00 00 0000000000111110111100 00000 010000000000
Q ss_pred ---CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 010145 321 ---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 397 (517)
Q Consensus 321 ---~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (517)
........+...+...+ ..++.+|. ...+.+..+.++.+++++.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~----~~~l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------ 309 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFF----APLIINRI-------GGKNALLLAGTIMSVRIIGSSFA------------------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----HHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred hhhcccccccccccccchhh----hhhhhccc-------ccccchhhhHHHHHHhhhccccc------------------
Confidence 01111222222233333 33333332 33444677777777766655542
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 010145 398 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLF 476 (517)
Q Consensus 398 ~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (517)
.+.+.++...++.+++.+...+...+++.|.+|++.|+++.++. ++...+|..+++.+.+.+.+
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~------------ 374 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------------ 374 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH------------
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 35667777888899999999999999999999999999999985 56788999999999888763
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 477 ~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
..+++..|++.++++++..++..+..++.+
T Consensus 375 -----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 375 -----SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -----HHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 245677888889888888877777765554
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=9.4e-11 Score=115.80 Aligned_cols=141 Identities=8% Similarity=-0.004 Sum_probs=120.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
....+...+...++..++.++.+++.||+ |||+++.++..+.+++.++..+.+ +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 311 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------------S 311 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------------------C
T ss_pred hhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------------------c
Confidence 34567777888888999999999999995 999999999999999988888764 5
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhccccCchhhHHHH
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNKGWQWGFGIS 163 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~ 163 (517)
.+.+++..++.|++.+...+...+++.|.+|+++ |++.++..+ ....+|..++|.++|++.+..||+..|++.
T Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 6678888899999999999999999999999887 999999754 566799999999999999999999999987
Q ss_pred HHHHHHHHHHHHhc
Q 010145 164 TATILLSIPIFLLG 177 (517)
Q Consensus 164 ~~~~~~~l~~~~~~ 177 (517)
++..++..++..+.
T Consensus 386 ~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 386 GLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77766555554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=5.9e-09 Score=104.74 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=114.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+.++..+.+.++..++.+++|++.||+ +||+..........+...........+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 339 (447)
T d1pw4a_ 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYWMNP-------------------- 339 (447)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTTSCC--------------------
T ss_pred ccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHHhcc--------------------
Confidence 67888999999999999999999999999995 987765555544444333333321111
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~~~f 160 (517)
..+.+..++..++.|++.++..+....+..|.+|++. |+.+.++.+...++ |.+++|.+.|++.+..||+..|
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 413 (447)
T d1pw4a_ 340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 413 (447)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 1156677788888999999999999999999999877 99999999888887 5677899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++..+..+++.+.+.
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 414 MVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877666665554443
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