Citrus Sinensis ID: 010147

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVCI
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEccccccccccccccccHHHHHHccccccccccccHHHHHHHHcccccccccHHccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEc
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEccccccccEEccccccHHHHcccccEEEEccccccEEEcccccccccccEEEEEEccEEccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEc
mescdcidtqwppdeLLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTlgleecalwmpsrtglnlELSYTLNnqiqigssvpinlpivtdvfnsaqamrlpyncplARIRLLvgryvppdivAVRVpllhlsnfqindwpelpakSYAVMVLMLptdggrkwrdHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLlletdltpeQRVMIETVLKSSNLLTTLVDdvldlsrledgsleldngpfNLQIVLREVIKLIKPVASCKKLSMTlimapelptyavgdeKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrppefypvstdghfYLRVQVCI
mescdcidtqwppDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRadeldremgliltqeetgrhvrMLTHEirstldrhtiLKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVlkssnlltTLVDDVLDLSRLEDgsleldngpFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrPPEFypvstdghfYLRVQVCI
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNllttlvddvldlSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVCI
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE**************************IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVC*
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREM******EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA****************YPVSTDGHFYLRVQVCI
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVCI
**SCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVCI
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDxxxxxxxxxxxxxxxxxxxxxxxxxIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVCI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query517 2.2.26 [Sep-21-2011]
Q38846613 Ethylene response sensor yes no 0.996 0.840 0.770 0.0
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 0.996 0.697 0.745 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.996 0.695 0.749 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 0.996 0.695 0.739 0.0
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.996 0.697 0.741 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.996 0.695 0.747 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.996 0.695 0.741 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.996 0.695 0.726 0.0
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.994 0.681 0.724 0.0
P49333 738 Ethylene receptor 1 OS=Ar no no 0.988 0.692 0.724 0.0
>sp|Q38846|ERS1_ARATH Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/515 (77%), Positives = 459/515 (89%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct: 1   MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct: 61  FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct: 121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct: 181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct: 241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct: 301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AII+LSSLLLET+L+PEQRVMIET+LKSSNL+ TL+ DVLDLSRLEDGSL L+N PF+LQ
Sbjct: 361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
            +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct: 421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515
           SIIAS+ KPESL +   PEF+PV +D HFYL VQV
Sbjct: 481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQV 515
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
283520948 634 ethylene response sensor 1 [Citrus hybri 0.996 0.812 1.0 0.0
4092526 634 putative ethylene receptor [Citrus sinen 0.996 0.812 0.992 0.0
224068380 636 ethylene receptor 1 [Populus trichocarpa 0.996 0.809 0.848 0.0
237769861 636 ethylene receptor [Dimocarpus longan] gi 0.996 0.809 0.823 0.0
225437449 636 PREDICTED: ethylene receptor 2 [Vitis vi 0.996 0.809 0.825 0.0
82471111 632 ERS type ethylene receptor [Ziziphus juj 0.996 0.814 0.842 0.0
163639425 629 ethylene receptor ERS1b [Actinidia delic 0.996 0.818 0.815 0.0
11935116 634 ethylene receptor [Carica papaya] 0.992 0.809 0.829 0.0
44885996 633 ethylene receptor [Diospyros kaki] 0.996 0.813 0.823 0.0
255564264 636 ethylene receptor, putative [Ricinus com 0.996 0.809 0.827 0.0
>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/515 (100%), Positives = 515/515 (100%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS
Sbjct: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL
Sbjct: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA
Sbjct: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG
Sbjct: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA
Sbjct: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH
Sbjct: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ
Sbjct: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420

Query: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
           IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV
Sbjct: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480

Query: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515
           SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV
Sbjct: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis] Back     alignment and taxonomy information
>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa] gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan] gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|225437449|ref|XP_002272649.1| PREDICTED: ethylene receptor 2 [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] Back     alignment and taxonomy information
>gi|44885996|dbj|BAD11810.1| ethylene receptor [Diospyros kaki] Back     alignment and taxonomy information
>gi|255564264|ref|XP_002523129.1| ethylene receptor, putative [Ricinus communis] gi|223537691|gb|EEF39314.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.996 0.840 0.755 1.4e-208
UNIPROTKB|Q41341 635 Never-ripe "Ethylene receptor" 0.994 0.809 0.735 1.5e-200
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.994 0.681 0.707 3.6e-192
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.988 0.692 0.706 1.2e-191
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.959 0.641 0.409 1.7e-89
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.912 0.616 0.388 1.2e-81
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.893 0.716 0.370 2.5e-74
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.323 0.181 0.380 1.4e-22
UNIPROTKB|Q9KPC0 927 VC_2453 "Sensor histidine kina 0.324 0.181 0.375 1.5e-22
TIGR_CMR|VC_2453 927 VC_2453 "sensor histidine kina 0.324 0.181 0.375 1.5e-22
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2017 (715.1 bits), Expect = 1.4e-208, P = 1.4e-208
 Identities = 389/515 (75%), Positives = 449/515 (87%)

Query:     1 MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
             MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct:     1 MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query:    61 FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
             FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct:    61 FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query:   121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
             FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct:   121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query:   181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
             LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct:   181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query:   241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
             RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct:   241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query:   301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
             DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct:   301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query:   361 AIIALSSLLLETDLTPEQRVMIETVLKSSNXXXXXXXXXXXXSRLEDGSLELDNGPFNLQ 420
             AII+LSSLLLET+L+PEQRVMIET+LKSSN            SRLEDGSL L+N PF+LQ
Sbjct:   361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query:   421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480
              +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct:   421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query:   481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 515
             SIIAS+ KPESL +   PEF+PV +D HFYL VQV
Sbjct:   481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQV 515
GO:0004673 "protein histidine kinase activity" evidence=ISS;TAS
GO:0007165 "signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA
GO:0051740 "ethylene binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.74170.99610.6950N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.71870.98830.6924N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.72620.99610.6959N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.77080.99610.8401yesno
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.74170.99610.6978N/Ano
O49187ETR2_SOLLC2, ., 7, ., 1, 3, ., 30.70310.98830.6942N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.72480.99410.6816N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.73980.99610.6950N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.74560.99610.6978N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.72670.98830.6952N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.74950.99610.6959N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.74750.99610.6959N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.976
3rd Layer2.7.13.30.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 7e-34
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 9e-32
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 3e-23
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 2e-22
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 5e-22
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 9e-21
pfam01590143 pfam01590, GAF, GAF domain 3e-17
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 6e-15
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 2e-14
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 5e-13
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 5e-13
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 8e-12
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 3e-11
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 8e-10
smart00065149 smart00065, GAF, Domain present in phytochromes an 5e-09
COG5002459 COG5002, VicK, Signal transduction histidine kinas 2e-08
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 4e-08
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 2e-07
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 7e-07
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-06
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 2e-05
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 3e-05
pfam13492129 pfam13492, GAF_3, GAF domain 7e-05
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 8e-05
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 1e-04
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 8e-04
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 0.001
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 0.002
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 0.003
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 0.004
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information 
 Score =  136 bits (344), Expect = 7e-34
 Identities = 69/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 324 ME-QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMI 382
           ME QNV LD A++ A++A   +++F A M+HE+RT ++ +I  +   L+T LTP QR  +
Sbjct: 272 MEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYL 331

Query: 383 ETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMT 442
           +T+ +S+N L  +++D+LD S+LE G L L+N PF+L+  L EV+ L+   A  K L +T
Sbjct: 332 QTIERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELT 391

Query: 443 LIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482
           L + P++P   +GD  RL Q I N+VGNA+KFT+ G + I
Sbjct: 392 LNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDI 431

Length = 919
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 517
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10490895 sensor protein KdpD; Provisional 99.97
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 99.95
PRK13837 828 two-component VirA-like sensor kinase; Provisional 99.94
PRK11091 779 aerobic respiration control sensor protein ArcB; P 99.92
PRK10618 894 phosphotransfer intermediate protein in two-compon 99.89
PRK10841 924 hybrid sensory kinase in two-component regulatory 99.88
PRK09303380 adaptive-response sensory kinase; Validated 99.87
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.87
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 99.86
PRK15347 921 two component system sensor kinase SsrA; Provision 99.86
COG5002459 VicK Signal transduction histidine kinase [Signal 99.85
COG4251750 Bacteriophytochrome (light-regulated signal transd 99.85
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 99.85
PRK11006430 phoR phosphate regulon sensor protein; Provisional 99.81
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.81
COG4191603 Signal transduction histidine kinase regulating C4 99.79
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.79
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.77
PRK10364457 sensor protein ZraS; Provisional 99.75
PRK10604433 sensor protein RstB; Provisional 99.71
PRK10815485 sensor protein PhoQ; Provisional 99.7
PRK10337449 sensor protein QseC; Provisional 99.69
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.69
COG4192673 Signal transduction histidine kinase regulating ph 99.68
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.67
PRK11644495 sensory histidine kinase UhpB; Provisional 99.67
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.67
COG5000712 NtrY Signal transduction histidine kinase involved 99.67
PRK10755356 sensor protein BasS/PmrB; Provisional 99.67
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.65
PRK09835482 sensor kinase CusS; Provisional 99.64
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.64
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.64
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.63
PRK11100475 sensory histidine kinase CreC; Provisional 99.57
PRK09470461 cpxA two-component sensor protein; Provisional 99.57
PRK09467435 envZ osmolarity sensor protein; Provisional 99.56
PRK11360607 sensory histidine kinase AtoS; Provisional 99.55
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.54
PRK13560807 hypothetical protein; Provisional 99.52
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 99.44
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.4
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.4
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.39
PRK13557 540 histidine kinase; Provisional 99.38
PRK13559361 hypothetical protein; Provisional 99.29
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.22
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 99.21
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 99.12
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.01
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.97
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.96
PRK05022 509 anaerobic nitric oxide reductase transcription reg 98.86
COG3290537 CitA Signal transduction histidine kinase regulati 98.8
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.8
COG3605 756 PtsP Signal transduction protein containing GAF an 98.8
PRK11086542 sensory histidine kinase DcuS; Provisional 98.76
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.73
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.67
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 98.66
COG3920221 Signal transduction histidine kinase [Signal trans 98.65
KOG0519 786 consensus Sensory transduction histidine kinase [S 98.61
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.44
COG4585365 Signal transduction histidine kinase [Signal trans 98.22
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 98.2
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 98.2
PRK13558665 bacterio-opsin activator; Provisional 97.95
COG4564459 Signal transduction histidine kinase [Signal trans 97.69
COG3275557 LytS Putative regulator of cell autolysis [Signal 97.18
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 96.83
COG1956163 GAF domain-containing protein [Signal transduction 96.81
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 96.57
COG2972456 Predicted signal transduction protein with a C-ter 96.44
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 96.39
PRK10547 670 chemotaxis protein CheA; Provisional 96.28
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 95.46
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 94.94
COG5385214 Uncharacterized protein conserved in bacteria [Fun 93.54
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 92.6
PRK04184 535 DNA topoisomerase VI subunit B; Validated 92.21
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 92.18
PRK10963223 hypothetical protein; Provisional 92.08
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 91.05
PF10090182 DUF2328: Uncharacterized protein conserved in bact 90.91
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 89.96
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 88.96
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 87.82
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 85.44
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 85.43
PF0753683 HWE_HK: HWE histidine kinase; InterPro: IPR011102 81.82
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 81.32
COG3159218 Uncharacterized protein conserved in bacteria [Fun 80.45
PRK03660146 anti-sigma F factor; Provisional 80.39
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-36  Score=304.82  Aligned_cols=419  Identities=19%  Similarity=0.253  Sum_probs=303.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH-------HHH--hh--cccchhhHHHHHHHHHH
Q 010147           24 SDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHF-------ISL--WT--FTVHSKAVAVVMTIAKM   92 (517)
Q Consensus        24 ~~~~ia~ay~~i~~~l~~f~~~~~~~~~~~~~~~~~~fi~~cg~~h~-------~~~--~~--~~~~~~~~~~~~~~~~~   92 (517)
                      .|.+++..++++...+..++.+.=+...-.++++.|.+++..-.+-.       +++  ++  |..|-|.+. ....-..
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~  475 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL  475 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence            78999999999999998888777666666666667766654321111       111  00  011100000 0000011


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHh
Q 010147           93 ACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR  172 (517)
Q Consensus        93 ~ta~vs~~~a~~l~~l~p~~l~l~s~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~  172 (517)
                      +|-.|+++.++                 +...++.+++++.+..++++++.+.++++++.+..+.+.++++.++.+.+.+
T Consensus       476 vTf~vml~vai-----------------~t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~  538 (890)
T COG2205         476 VTFAVMLAVAL-----------------LTGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS  538 (890)
T ss_pred             HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            12222222222                 2456788999999999999999999999999999999999999999999999


Q ss_pred             hhCCceeEEEccCCCCCeEEEEEEecccccccccccc-CCchhHHHhhccCceeecCCCchhhhhhccCCCCCCceeEEe
Q 010147          173 TLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVR  251 (517)
Q Consensus       173 ~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (517)
                      +++. ++.++++++++....+.  ..    .+  ++. +.....+++.++++--.             +.-..|....+.
T Consensus       539 ~~~~-~v~i~l~~~~~~~~~~~--~~----~~--l~~~d~aaa~W~~~~~~~AG~-------------gTdTlpg~~~~~  596 (890)
T COG2205         539 LLNQ-RVVILLPDDNGKLQPLG--NP----DG--LSADDRAAAQWAFENGKPAGA-------------GTDTLPGAKYLY  596 (890)
T ss_pred             HhCC-ceEEEEecCCccccccc--CC----cc--ccHHHHHHhhchhhCCCcccc-------------CCCCCCCCceeE
Confidence            9999 88889988665441111  10    00  111 11122233333221110             111122333344


Q ss_pred             eeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147          252 VPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALD  331 (517)
Q Consensus       252 ~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~~~l~~~~~~l~  331 (517)
                      .|              +..++...||++.........++++..++.++++|+|.|+++..+.++..+.+-+         
T Consensus       597 lP--------------l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~---------  653 (890)
T COG2205         597 LP--------------LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA---------  653 (890)
T ss_pred             ee--------------cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            55              4445556888888888666799999999999999999999999988876554421         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010147          332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDG  408 (517)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~  408 (517)
                            .++++.++.|++++||||||||++|.|.++.|...  ..+ ++..+.+..|.+.++++..+|++|||++|+++|
T Consensus       654 ------~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG  727 (890)
T COG2205         654 ------AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSG  727 (890)
T ss_pred             ------HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence                  23445688999999999999999999999999865  334 447889999999999999999999999999999


Q ss_pred             CcccccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEEc
Q 010147          409 SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVA  487 (517)
Q Consensus       409 ~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~-i~i~~~~~  487 (517)
                      .+.++.++..+.++|.+++..++.....+.  +.++++.++|. +.+|...+.||+.||++||+||+|+|. |.|.+..+
T Consensus       728 ~~~l~~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~  804 (890)
T COG2205         728 GVNLKLDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE  804 (890)
T ss_pred             CcccccchhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe
Confidence            999999999999999999999887765554  66677788885 899999999999999999999999764 88888877


Q ss_pred             CCC-ccccCCCCCCCCCCCCCceEEEEE
Q 010147          488 KPE-SLSDWRPPEFYPVSTDGHFYLRVQ  514 (517)
Q Consensus       488 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~  514 (517)
                      .+. .+.++|+|+|+|......+|-+|.
T Consensus       805 ~~~v~~~V~DeGpGIP~~~~~~IFD~F~  832 (890)
T COG2205         805 RENVVFSVIDEGPGIPEGELERIFDKFY  832 (890)
T ss_pred             cceEEEEEEeCCCCCChhHHHHhhhhhh
Confidence            654 355889999999888888887775

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
3dge_A258 Structure Of A Histidine Kinase-response Regulator 3e-06
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 3e-06
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 344 RNDFRAVMNHEMRTLMHAIIALSSL----LLETDLTPEQRVMIETVLKSSNXXXXXXXXX 399
           + +F A ++HE+RT + AI A +      L E DL+   +  +E ++  SN         
Sbjct: 20  KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 400 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 459
              SRLE  SL+++    +L  ++   +  IK  AS   +++        P  A  D  R
Sbjct: 79  LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 460 LMQTILNIVGNAVKFTK----EGYVSII 483
           + Q +LN++ N VK++K    + YV +I
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVI 166
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 2e-44
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 3e-37
3p01_A184 Two-component response regulator; PSI-2, midwest c 1e-18
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 2e-15
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 1e-14
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 1e-13
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 4e-09
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 5e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 9e-09
2btz_A 394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 3e-08
2e0a_A 394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 8e-08
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 9e-08
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 2e-07
2q8g_A 407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 4e-07
2qyb_A181 Membrane protein, putative; GAF domain, domain of 2e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 4e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 6e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
1y8o_A 419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 3e-05
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 6e-05
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  156 bits (398), Expect = 2e-44
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 313 LEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET 372
               +   + +++   AL        +A   + DF   +++E+RT +  II  S LL   
Sbjct: 11  SSGLVPRGSHMLQS--ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA 68

Query: 373 D-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 431
           D ++   R  +  V  ++  L   +DDVLD+++++ G + L+     +  +L    +   
Sbjct: 69  DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERAL 128

Query: 432 PVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVA 487
             A    +++ +    ++     GD KRL QT+ ++V NA++ T   G V++ A  A
Sbjct: 129 KDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query517
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 99.87
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 99.84
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.79
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.76
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 99.73
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.7
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.7
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.68
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.68
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.67
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.65
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.61
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.58
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.58
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.56
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.55
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.55
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.55
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.5
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.5
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.49
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.45
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.43
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.34
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.33
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.31
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.3
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.28
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.28
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.27
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.27
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.24
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.23
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 99.23
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.18
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.17
1vhm_A195 Protein YEBR; structural genomics, unknown functio 99.14
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 99.11
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 99.11
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 99.1
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 99.08
4e04_A327 Bacteriophytochrome (light-regulated signal trans 99.08
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 99.07
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 99.05
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.95
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.92
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.89
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.81
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 98.78
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.78
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 98.75
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 98.74
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.72
4eho_A 635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.7
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 98.62
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 98.56
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 98.55
3zxo_A129 Redox sensor histidine kinase response regulator; 98.47
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.43
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 98.26
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 98.18
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 98.14
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.93
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 96.43
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 95.82
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 95.11
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 95.11
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 94.91
3e98_A252 GAF domain of unknown function; structural genomic 94.49
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 93.94
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 91.52
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 90.61
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 90.0
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 85.71
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=99.87  E-value=1.9e-21  Score=185.60  Aligned_cols=174  Identities=24%  Similarity=0.338  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 010147          336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL  412 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l  412 (517)
                      ++++..+.+.+|++++|||+||||++|.++++++.+.   ...++.+++++.+.++++++..++++++++++++.+...+
T Consensus        12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~   91 (258)
T 2c2a_A           12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI   91 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence            3445556688999999999999999999999998754   2344567899999999999999999999999999888888


Q ss_pred             ccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEcC
Q 010147          413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAK  488 (517)
Q Consensus       413 ~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~----g~i~i~~~~~~  488 (517)
                      ..+++|+.+++++++..+...+..+++.+.++.+...+..+.+|+..+.||+.||+.||+||++.    +.|.+.+...+
T Consensus        92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~  171 (258)
T 2c2a_A           92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD  171 (258)
T ss_dssp             CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence            88999999999999999999999999999888764545557889999999999999999999864    34666655443


Q ss_pred             CCc-cccCCCCCCCCCCCCCce
Q 010147          489 PES-LSDWRPPEFYPVSTDGHF  509 (517)
Q Consensus       489 ~~~-~~~~~~~~~~~~~~~~~~  509 (517)
                      +.. +.+.++|+|+|.....++
T Consensus       172 ~~~~i~V~D~G~Gi~~~~~~~i  193 (258)
T 2c2a_A          172 GGVLIIVEDNGIGIPDHAKDRI  193 (258)
T ss_dssp             TEEEEEEEECSSCCCGGGTTGG
T ss_pred             CeEEEEEEecCCCCCHHHHHhh
Confidence            322 335566766654443333
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 517
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 4e-13
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 2e-08
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 1e-07
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 2e-07
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 3e-07
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 4e-07
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 2e-06
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 1e-04
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 2e-04
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 7e-04
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 0.001
d2hkja3 219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 0.003
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.9 bits (158), Expect = 4e-13
 Identities = 16/73 (21%), Positives = 33/73 (45%)

Query: 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGN 470
           +++    +L  ++   +  IK  AS   +++        P  A  D  R+ Q +LN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 471 AVKFTKEGYVSII 483
            VK++K+      
Sbjct: 61  GVKYSKKDAPDKY 73
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query517
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.56
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.5
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.41
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.35
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.28
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.16
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.15
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.12
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 99.11
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.08
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.07
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 99.01
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.99
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.89
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 98.85
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.81
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.7
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.52
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.35
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 98.33
d2hkja3 219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 94.14
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 91.0
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.3e-14  Score=125.27  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhccC
Q 010147          143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ  222 (517)
Q Consensus       143 ~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (517)
                      .+.+.++..++. .+|++++++.+++.+.+.+++++|+||+.|++...+......+........+|.+.+.+++++.+++
T Consensus         5 ~~~ll~l~~~l~-~ld~~~l~~~il~~~~~~~~ad~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~   83 (187)
T d1mc0a1           5 DRKILQLCGELF-DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ   83 (187)
T ss_dssp             HHHHHHHHHTCC-CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCceEEEEEeccCCcccceeecCCccHHHHHHHhhh
Confidence            344666666664 5899999999999999999999999999999988887666555544455668888999999999999


Q ss_pred             ceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEE-EeecCCCCccccchhHHHHHHHH
Q 010147          223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVL-MLPTDGGRKWRDHELELIDVVAD  301 (517)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~-~~~~~~~~~~~~~e~~ll~~va~  301 (517)
                      ++.++|...++.+.... .......+.+++|++..            .++..+|++ ..++..++.|+++|.+++..+|.
T Consensus        84 ~~~i~d~~~d~~~~~~~-~~~~~~~s~l~vPl~~~------------~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~~a~  150 (187)
T d1mc0a1          84 CIQLKDLTSDDVQQLQN-MLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHCFH  150 (187)
T ss_dssp             CEEGGGSCHHHHHHHHH-HHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHH
T ss_pred             hhhhhccccccccccch-hhhhhHHHHHhhhhhcc------------ccccceEEEEEEcccccchhhhHHHHHHHHHHH
Confidence            99999998887665432 22334567788887532            233467777 44556678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010147          302 QVAVALSHAAILEDSMRARNQL  323 (517)
Q Consensus       302 qva~al~~a~l~~~~~~~~~~l  323 (517)
                      ++|+||+|++++++.++.++++
T Consensus       151 ~~a~ai~na~l~~~~~~~~~~~  172 (187)
T d1mc0a1         151 YTGTVLTSTLAFQKEQKLKCEC  172 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877665443
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure