Citrus Sinensis ID: 010168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
Protein Sequence
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHcccHHHHHccHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHcccccHHcccccccHHHccccccccccccEEEEEccccccEEEEccccHHHHHcccccHHHHHHHHHccHHHHHHHHHccccccHHHHcccccHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccEEEccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEcccHHHHHHHHcccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
mefaffrglpenlsiLDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMpyiekvslfkgcsseFINQIVIRVHeefflpgevimEQGNVVDQLYFVCHGVleevgvgedgseetvsqlqpnssfgevsilcnipqpytVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVnsaayhgdlyqlkgliragadpnktdydgrsplhlatsrgyeDITLFLIQKgvdinikdkfgntplleaikcghDGVTSLLVKEgaslnvddagsFLCTAVARGDSDFLKRVLsngvdpssrdydhrtplhvAASEGLYLMAKLLLEAGAsvftkdrwgntpldegrmcgnKNLIKLLEDAectqlsefhycsqgmidkmhprkctvfpfhpwdekvhrrhgiVLWVPHNIEELIKLAVdkldfpdghsilsedggkildvdmindgQKLYLISETQ
Flexible Loop (DISEMBL)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNgvdpssrdydhrTPLHVAASEGLYLMAKLLLEAGASVFTKDRwgntpldegrmcGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILsedggkildvdMINDGQKLYLISETQ
Low Complexity Region (SEG)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFvchgvleevgvgedgseetvSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Disordered region (IsUnstruct)
**FAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG****************FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGAD****DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG********DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLI****
Disordered Region (DISOPRED)
MEFAFF*GLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLI****
Disordered Region (DISEMBL)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG************PNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Disordered Region (DISPRO)
*EFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFAFFRGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	516	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.901	0.561	0.698	0.0
Q94A76	820	Potassium channel GORK OS	no	no	0.875	0.551	0.663	0.0
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.895	0.538	0.632	0.0
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.705	0.506	0.583	1e-129
Q38998	857	Potassium channel AKT1 OS	no	no	0.689	0.415	0.320	7e-47
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.689	0.400	0.323	5e-46
Q9SCX5	880	Probable potassium channe	no	no	0.709	0.415	0.312	1e-45
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.757	0.418	0.296	2e-45
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.757	0.418	0.296	2e-45
Q38898	802	Potassium channel AKT2/3	no	no	0.846	0.544	0.290	2e-42

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/465 (69%), Positives = 392/465 (84%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     +L  +P  +  KI+QTLY+PYIEKV LF+GCSSEFINQIVIR+HEEF
Sbjct: 364 LRLQYESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEF 423

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQG+VVDQLYFVCHGVLEE+G+ +DGSEE V+ LQP+ SFGE+SILCNIPQP
Sbjct: 424 FLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQP 483

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV + EL R+LR+DKQSF NILEI+F DGR++L NLLEGKESN+R+KQL+SDITFHI K
Sbjct: 484 YTVRVAELCRILRLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISK 543

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELAL++NSAA++GDLYQLK LIRAG DPNKTDYDGRSPLHLA SRGYEDITL+LIQ+
Sbjct: 544 QEAELALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQE 603

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
            VD+NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+++AG+FLCT VA+GDSDFLKR
Sbjct: 604 SVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKR 663

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +LSNG+DP+S+DYDHRTPLHVAASEG Y++A  L+EA A+V  KDRWGNTPLDE   CGN
Sbjct: 664 LLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGN 723

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           K LIKLLEDA+ +Q+S F   S+   DK++ +KCTV+  HP D K  RR GIVLWVP +I
Sbjct: 724 KMLIKLLEDAKNSQISSFPSGSKEPKDKVYKKKCTVYFSHPGDSKEKRRRGIVLWVPRSI 783

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISET 515
           EELI+ A ++L+ P+   +LSED  KI+DVD+I+DGQKLYL  ET
Sbjct: 784 EELIRTAKEQLNVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/457 (66%), Positives = 378/457 (82%), Gaps = 5/457 (1%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +L  +P  +  KI+Q LY+PYI+KV LFKGCS+EFINQIVIR+HEE+FLPGEVI EQGNV
Sbjct: 360 MLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNV 419

Query: 124 VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183
           VD LYFVC G+LE +    DGSEE+V+ L P++SFG++SI+CNI QP+TV +CEL  LLR
Sbjct: 420 VDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLR 479

Query: 184 IDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAA 243
           +DKQSF+NILEIYF DGR +L N++E KESN R+K+L+SDI  HIGK EAELAL+VNSAA
Sbjct: 480 LDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNSAA 539

Query: 244 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 303
           + GD YQLK LIR+GADPNKTDYDGRSPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+T
Sbjct: 540 FQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHT 599

Query: 304 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY 363
           PL EA+K G +GV  LLVKEGAS N++D+G+FLCT VA+GDSDFLKR+LS+G++P+S DY
Sbjct: 600 PLFEAVKAGQEGVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDY 659

Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423
           DHRTPLHVAASEGL+LMAK+L+EAGASV +KDRWGN+PLDE R+CGNK LIKLLED +  
Sbjct: 660 DHRTPLHVAASEGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNA 719

Query: 424 QLSEFHYCSQGMI-DKMHPRKCTVFPFHPWD--EKVHRRHGIVLWVPHNIEELIKLAVDK 480
           Q S +    + +  +++  RKCTVFPFHP +  E+  R+HG+V+W+P N+E+LI  A  +
Sbjct: 720 QSSIYPSSLRELQEERIERRKCTVFPFHPQEAKEERSRKHGVVVWIPSNLEKLIVTAAKE 779

Query: 481 LDFPDGHS--ILSEDGGKILDVDMINDGQKLYLISET 515
           L   DG S  +LSED G+I D+DMI+DG KLY+IS+T
Sbjct: 780 LGLSDGASFVLLSEDQGRITDIDMISDGHKLYMISDT 816

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 294/465 (63%), Positives = 372/465 (80%), Gaps = 3/465 (0%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     +L  +P  +  KISQTLY PYIE + LFKGCS+EFI QIVIR+ EEF
Sbjct: 380 LRLQYESSYTEASVLQDIPVSIRAKISQTLYKPYIESIPLFKGCSAEFIQQIVIRLQEEF 439

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVI+EQG+ VDQLYFVCHG LE VG+GEDG EET+  L+P SSFGE+++LCNIPQP
Sbjct: 440 FLPGEVILEQGSAVDQLYFVCHGALEGVGIGEDGQEETILMLEPESSFGEIAVLCNIPQP 499

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           +TV +CEL RLLR+DKQSFTNILEI+F DGR++L+NL E  E   R+KQL+SDITFHIGK
Sbjct: 500 FTVRVCELCRLLRLDKQSFTNILEIFFVDGRRILSNLSESSEYGSRIKQLESDITFHIGK 559

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAEL LRVN+AA++GD++QLK LIRAGADP  TDYDGRSPLHLA  +G+ED+  FL+ +
Sbjct: 560 QEAELTLRVNNAAFYGDMHQLKSLIRAGADPKNTDYDGRSPLHLAACKGFEDVVQFLLHE 619

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
           GVDI++ DKFGNTPLLEA+K GHD V +LL  +GA L++++AGS LCTAVARGD+DF++R
Sbjct: 620 GVDIDLSDKFGNTPLLEAVKQGHDRVATLLFSKGAKLSLENAGSHLCTAVARGDTDFVRR 679

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
            L+ G DP++RDYDHR PLH+AA+EGLYLMAKLL++AGASVF  DRWG TPLDEGR CG+
Sbjct: 680 ALAYGGDPNARDYDHRAPLHIAAAEGLYLMAKLLVDAGASVFATDRWGTTPLDEGRRCGS 739

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           + +++LLE A+  +LS +    + + DKMHPR+C+VFP HPWD    RR G+V+W+PH I
Sbjct: 740 RTMVQLLEAAKSGELSRYPERGEEVRDKMHPRRCSVFPHHPWDGGERRREGVVVWIPHTI 799

Query: 471 EELIKLAVDKLDFP---DGHSILSEDGGKILDVDMINDGQKLYLI 512
           E L+  A +KL      +G  +L EDG ++LDVDM++DGQKLYL+
Sbjct: 800 EGLVSSAQEKLGLAGSGEGLRLLGEDGARVLDVDMVHDGQKLYLV 844

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/367 (58%), Positives = 287/367 (78%), Gaps = 3/367 (0%)

Query: 55  YLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPG 114
           Y +   I+D    +P  V  K+SQTLY+  + +V LF+GCS +F++QIV+++HEEFFLPG
Sbjct: 351 YTRDRVIVD---DIPVAVRSKMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLPG 407

Query: 115 EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVC 174
           EVI+EQG VVDQ+Y V HG LEEV  GEDGSEE +S+L+P    G+V+++CNIPQPYTV 
Sbjct: 408 EVILEQGTVVDQIYIVAHGCLEEVANGEDGSEEIISELRPYGIVGDVAVICNIPQPYTVR 467

Query: 175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAE 234
           +CEL  LLRIDKQS T+IL+IYF D  ++L+NLL+GKE+  + KQL+SDIT+ + K E+E
Sbjct: 468 VCELCSLLRIDKQSLTSILQIYFKDNSQILSNLLKGKETESKRKQLESDITYLLAKQESE 527

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           L L VN+AAYHGD+++LK LI AGADP+K+DYDGR+ LH+A  RGYE+I  FLIQ+G ++
Sbjct: 528 LVLGVNNAAYHGDIFRLKSLISAGADPSKSDYDGRTALHIAALRGYENIVRFLIQRGANV 587

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           N  D+FGN+PLL+A+K GHD +TSLLV+ GA LN++DAG +LC  V  G  D LK++L  
Sbjct: 588 NSIDRFGNSPLLQAVKSGHDRITSLLVEHGAILNLEDAGGYLCRVVRGGRIDLLKKLLRF 647

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
           G+ P+ R+YD RTPLH+AA+EGL+L+A  L+E+GA +  KDRWGNTPLDEGR C +K L+
Sbjct: 648 GISPNCRNYDQRTPLHIAAAEGLHLVASTLIESGADIQAKDRWGNTPLDEGRRCSSKPLV 707

Query: 415 KLLEDAE 421
           ++LE A 
Sbjct: 708 RILEQAR 714

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  188 bits (478), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 193/359 (53%), Gaps = 3/359 (0%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
           + L  LP  +   IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ Q  
Sbjct: 345 ETLDALPKAIRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNE 404

Query: 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182
                Y + +G  + V V + G+E  V +++     GE+ +LC  PQ +TV    L +LL
Sbjct: 405 APTDFYILVNGTADLVDV-DTGTESIVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLL 463

Query: 183 RIDKQSFTNILEIYFCDGRKVLTNLLEG-KESN-LRLKQLKSDITFHIGKHEAELALRVN 240
           R+++ +F NI++    DG  ++ NLL+  KE N   +  +  +I   + + + +L L + 
Sbjct: 464 RMNRTTFLNIIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLC 523

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            AA   D   L  L++ G DPN++D +GR+PLH+A S+G  +  L L++   D N +D  
Sbjct: 524 FAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAE 583

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G+ PL EA+  GH+ V  +L++ G++++  D G F CTA  +G+   LK ++ +G D + 
Sbjct: 584 GSVPLWEAMVEGHEKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTR 643

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
                 + LH A  E    M K LLE GA V  +D  G TP D     G++++  L  +
Sbjct: 644 PRATGTSALHTAVCEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 186/359 (51%), Gaps = 3/359 (0%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
           +++  LP  +   IS  L+   ++K+ LF G S++ + Q+V  +  E+F P E ++ Q  
Sbjct: 371 EIIDSLPKAIRSSISHYLFYEVVDKIYLFHGISNDLLFQLVTEMKAEYFPPKEDVILQNE 430

Query: 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182
                Y +  G ++ +    +G E+ VS+ Q    FGEV +LC  PQ +TV    LS+LL
Sbjct: 431 APTDFYILVTGAVDIIA-RVNGVEQVVSEAQRGHVFGEVGVLCYRPQLFTVRTKRLSQLL 489

Query: 183 RIDKQSFTNILEIYFCDGRKVLTNLLE--GKESNLRLKQLKSDITFHIGKHEAELALRVN 240
           R+++    N+++    DG  ++ NLL+      +  +K + +D    + + + +L L + 
Sbjct: 490 RLNRTVLLNLVQANVGDGAIIMNNLLQHLKDSEDPVMKGVLADTEHMLAQGKMDLPLSLC 549

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            AA  GD   L  L+R G+ PN+ D DGR+ LH+A S+G     + L++ G D NI+D  
Sbjct: 550 FAAARGDDLLLHQLLRRGSSPNEMDKDGRTALHIAASKGSHYCVVLLLEHGADPNIRDSE 609

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           GN PL EAI   H  +  LL + GA L++D    F   AV +   D LK ++  G D + 
Sbjct: 610 GNVPLWEAIIGRHREIAKLLAENGAKLSLDSVSYFSGLAVEKNCLDALKDIIKYGGDVTL 669

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
            D +  T LH A SEG   + K LL+ GA +   D +G TP       GN+ +  L  +
Sbjct: 670 PDGNGTTALHRAVSEGHLEIVKFLLDQGADLDWPDSYGWTPRGLADHQGNEEIKTLFHN 728

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 48  LTRIALRY------LKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQ 101
           +  ++LRY      L+   IID    LP  +   IS  L+   ++K  LF G S++ + Q
Sbjct: 351 VAHLSLRYRTDSEGLQQQEIID---SLPKAIRSSISHYLFYEVVDKTYLFHGISNDLLFQ 407

Query: 102 IVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161
           +V  +  E+F P E ++ +       Y +  G ++ +    +G ++ V + Q    FGEV
Sbjct: 408 LVSEMKAEYFPPKEDVILRNEAPSDFYIMVTGAVDIIA-RVNGVDQVVGEAQTGHVFGEV 466

Query: 162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE--GKESNLRLKQ 219
            +LC  PQ +TV    LS+LLR+++ +F N+++    DG  ++ NLL+     ++  +K 
Sbjct: 467 GVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDPVMKG 526

Query: 220 LKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279
           + ++    + + + +L L +  AA  GD   L  L++ G++PN+TD +GR+ LH+A S+G
Sbjct: 527 ILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKG 586

Query: 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTA 339
            +   + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F C A
Sbjct: 587 SQYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLA 646

Query: 340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 399
           V + + + LK ++  G D S  D +  T LH A SEG   + + LLE GA +   D +G 
Sbjct: 647 VGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGW 706

Query: 400 TPLDEGRMCGNKNLIKLL 417
           T        G++++  L 
Sbjct: 707 TARALAEHQGHEDIKALF 724

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 200/398 (50%), Gaps = 7/398 (1%)

Query: 48  LTRIALRYLKSSFII---DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVI 104
           ++ I+L+Y   S  +   ++L  LP  +   ISQ L+   ++ V LF+G S++ I Q+V 
Sbjct: 374 ISHISLKYRTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVS 433

Query: 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL 164
            +  E+F P E ++ Q       Y +  G +E V   ++G+++ +         GE+ +L
Sbjct: 434 EMKAEYFPPREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVL 492

Query: 165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL---LEGKESNLRLKQLK 221
           C  PQ +TV    L +LLR+++ +F +I++    DG  ++ NL   L+ ++ N  +  + 
Sbjct: 493 CYRPQLFTVRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSVMAGVV 552

Query: 222 SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 281
            +I   + +   +L + +  A   GD + L  L++ G DPN++D DG + LH+A S+G E
Sbjct: 553 KEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNE 612

Query: 282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA 341
                L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  D G + C AV 
Sbjct: 613 QCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSGDTGLYACIAVE 672

Query: 342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 401
             D++ L  ++  G D +    D  T LH A  +G   MA+LLLE GA +  +D  G TP
Sbjct: 673 ESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGADIDKQDGNGWTP 732

Query: 402 LDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKM 439
                  G+ ++  L    +    S  H+       ++
Sbjct: 733 RALAEQQGHDDIQLLFRSRKAATASGHHHVPSSTTTRV 770

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 200/398 (50%), Gaps = 7/398 (1%)

Query: 48  LTRIALRYLKSSFII---DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVI 104
           ++ I+L+Y   S  +   ++L  LP  +   ISQ L+   ++ V LF+G S++ I Q+V 
Sbjct: 374 ISHISLKYRTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVS 433

Query: 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL 164
            +  E+F P E ++ Q       Y +  G +E V   ++G+++ +         GE+ +L
Sbjct: 434 EMKAEYFPPREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVL 492

Query: 165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL---LEGKESNLRLKQLK 221
           C  PQ +TV    L +LLR+++ +F +I++    DG  ++ NL   L+ ++ N  +  + 
Sbjct: 493 CYRPQLFTVRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSVMAGVV 552

Query: 222 SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 281
            +I   + +   +L + +  A   GD + L  L++ G DPN++D DG + LH+A S+G E
Sbjct: 553 KEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNE 612

Query: 282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA 341
                L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  D G + C AV 
Sbjct: 613 QCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSGDTGLYACIAVE 672

Query: 342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 401
             D++ L  ++  G D +    D  T LH A  +G   MA+LLLE GA +  +D  G TP
Sbjct: 673 ESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGADIDKQDGNGWTP 732

Query: 402 LDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKM 439
                  G+ ++  L    +    S  H+       ++
Sbjct: 733 RALAEQQGHDDIQLLFRSRKAATASGHHHVPSSTTTRV 770

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 226/479 (47%), Gaps = 42/479 (8%)

Query: 44  LVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIV 103
           L Y   R     L    +ID L   P  +   I Q L++P +EKV LFKG S E +  +V
Sbjct: 351 LAYMCLRFKAESLNQQHLIDQL---PKSIYKSICQHLFLPSVEKVYLFKGVSREILLLLV 407

Query: 104 IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI 163
            ++  E+  P E ++ Q    D +Y +  G +E +   E   E  +  L+    FGEV  
Sbjct: 408 SKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIID-SEMERESVLGTLRCGDIFGEVGA 466

Query: 164 LCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE--GKESNLRLKQLK 221
           LC  PQ YT     LS+LLR+        ++I   D   +L N L+   K SNL +  LK
Sbjct: 467 LCCRPQSYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDIGDLK 526

Query: 222 SDITFHIGKHE----AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277
           +      G++       +A  + +    G+   L  L++A   P+ TD  G++PLH+A S
Sbjct: 527 AQ---QNGENTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAAS 583

Query: 278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 337
           RGYED  L L++ G +I+I+D  GN+ L EAI   H  +  +L    A  +   AG  LC
Sbjct: 584 RGYEDCVLVLLKHGCNIHIRDVNGNSALWEAIISKHYEIFRILYHFAAISDPHIAGDLLC 643

Query: 338 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 397
            A  + + + +K +L  G++  + D+   T L VA +E    M  LL   GA V   +  
Sbjct: 644 EAAKQNNVEVMKALLKQGLNVDTEDHHGVTALQVAMAEDQMDMVNLLATNGADVVCVNTH 703

Query: 398 GN-TPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD--E 454
              TPL++ R+                 + E     +G        + +++  HP +  E
Sbjct: 704 NEFTPLEKLRV-----------------VEEEEEEERG--------RVSIYRGHPLERRE 738

Query: 455 KVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILS-EDGGKILDVDMINDGQKLYLI 512
           +     G ++ +P ++++L K+A +K  F    ++++ EDG +I  +++I D  KLY +
Sbjct: 739 RSCNEAGKLILLPPSLDDLKKIAGEKFGFDGSETMVTNEDGAEIDSIEVIRDNDKLYFV 797

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
224065090	841	predicted protein [Populus trichocarpa]	0.897	0.550	0.782	0.0
356499077	849	PREDICTED: potassium channel SKOR-like [	0.897	0.545	0.774	0.0
356552003	850	PREDICTED: potassium channel SKOR-like [	0.897	0.544	0.772	0.0
224079588	821	predicted protein [Populus trichocarpa]	0.866	0.544	0.798	0.0
147777957	559	hypothetical protein VITISV_022830 [Viti	0.885	0.817	0.774	0.0
225451365	794	PREDICTED: potassium channel SKOR [Vitis	0.885	0.575	0.772	0.0
255585584	445	Potassium channel SKOR, putative [Ricinu	0.856	0.993	0.787	0.0
449445216	828	PREDICTED: potassium channel SKOR-like [	0.903	0.562	0.725	0.0
27651624	795	shaker-like potassium channel [Vitis vin	0.885	0.574	0.742	0.0
449479935	828	PREDICTED: potassium channel SKOR-like [	0.903	0.562	0.725	0.0

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/464 (78%), Positives = 404/464 (87%), Gaps = 1/464 (0%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S      L  LP  +  K+SQTLY  YIEKV L KGCS+EFINQIVIR+HEEF
Sbjct: 373 VRLQYESSYTEASALQDLPISIRAKVSQTLYTEYIEKVPLLKGCSAEFINQIVIRLHEEF 432

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQGNVVDQLYFVCHGVLEEVG+G+DGSEETV  L PNSSFGE+SILCNIPQP
Sbjct: 433 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQP 492

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV +CEL RLLRIDKQSF+NILEIYF DGRK+L NLLEGKESNLR KQL+SDITFHIGK
Sbjct: 493 YTVRVCELCRLLRIDKQSFSNILEIYFYDGRKILDNLLEGKESNLRDKQLESDITFHIGK 552

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELALRVNSAAYHGDLYQLKG IRAGADPN+TDYDGRSPLHLA SRGYEDITLFLIQ+
Sbjct: 553 QEAELALRVNSAAYHGDLYQLKGFIRAGADPNRTDYDGRSPLHLAASRGYEDITLFLIQE 612

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
           GVDINIKDKFGNTPLLEAIK GHD V SLL K+GA LN+DDAGS LC AVARGDSDFLKR
Sbjct: 613 GVDINIKDKFGNTPLLEAIKNGHDRVESLLFKQGAILNIDDAGSVLCRAVARGDSDFLKR 672

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +LSNG+DP+S+DYDHRTPLHVAASEGLYLMAKLL+EAGASVF+KDRWGNTPLDEGRMCGN
Sbjct: 673 ILSNGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGASVFSKDRWGNTPLDEGRMCGN 732

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           K LIKLLE+A+ +Q  EFHY +    +K+ P+KCT+FPFHPW E+  RR G+VLWVP+ +
Sbjct: 733 KKLIKLLEEAKSSQKLEFHYSTHETTEKVLPKKCTIFPFHPWAEE-QRRPGVVLWVPNTM 791

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISE 514
           EEL+K A ++L FPDG  ILSED GKILDV+MI+ GQKLYL S+
Sbjct: 792 EELVKAASEQLQFPDGSCILSEDAGKILDVNMIDGGQKLYLTSD 835

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/466 (77%), Positives = 409/466 (87%), Gaps = 3/466 (0%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     ++  +P  +  KISQTLY+PYIEKVSLFKGCSSEFINQIVIR+HEEF
Sbjct: 387 VRLQYESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEF 446

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQGNVVDQLYFVCHGVLEEVG+ EDG+EETVS LQPNSSFGE+SILCNIPQP
Sbjct: 447 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQP 506

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV +CEL RLLR+DKQSFTNIL+IYF DGRKVL NLLEGKES  R KQL+SDITFH+GK
Sbjct: 507 YTVRVCELGRLLRLDKQSFTNILDIYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGK 565

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELAL+VNSAA++GD+YQLKGLIRAGADPNK DYDGRSPLHLA SRGYEDIT+FLIQ+
Sbjct: 566 QEAELALKVNSAAFNGDMYQLKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQE 625

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
            VD+NI D FGNTPLLEA+K GHD V SLLVKEGAS+ +++AGSFLCTAVARGDSD+LKR
Sbjct: 626 RVDVNIIDNFGNTPLLEAVKNGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKR 685

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +LSNG+DP+ +DYD+R+PLHVAA+EGLY MAKLLLEAGASVFT+DRWGNTPLDE RMCGN
Sbjct: 686 LLSNGMDPNLKDYDYRSPLHVAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGN 745

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           KNLIKLLEDA+ +QLSEF   SQ   DKMHP+KCTVFPFHPWD K +RRHGIVLW+PH+I
Sbjct: 746 KNLIKLLEDAKSSQLSEF--PSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSI 803

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ 516
           EELIK A ++++   G  ILSED GKI DVDMI DGQKLYL+ ET 
Sbjct: 804 EELIKSAAEQIEISGGSCILSEDAGKITDVDMIKDGQKLYLVHETH 849

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/466 (77%), Positives = 408/466 (87%), Gaps = 3/466 (0%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     ++  +P  +  KISQTLY+PYIEKVSLFKGCSSEFI QIVIR+HEEF
Sbjct: 388 VRLQYESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFIRQIVIRLHEEF 447

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQGNVVDQLYFVCHGVLEEVG  EDG+EETVS LQPNSSFGE+SILCNIPQP
Sbjct: 448 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAEDGTEETVSLLQPNSSFGEISILCNIPQP 507

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV +CELSRLLR+DKQSFTNIL+IYF DGRKVL NLLEGKES  R KQL+SDITFHIGK
Sbjct: 508 YTVRVCELSRLLRLDKQSFTNILDIYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGK 566

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELAL+VN+AA++GDLYQLKGLIRAGADPNKTDYDGRSPLHLA SRGYEDITLFLIQ+
Sbjct: 567 QEAELALKVNNAAFNGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQE 626

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
            VD+NIKD FGNTPLLEA+K GHD V SLLV+EGAS+ +++AGSFLCTAVARGDSD+LKR
Sbjct: 627 RVDVNIKDNFGNTPLLEAVKNGHDRVASLLVREGASMKIENAGSFLCTAVARGDSDYLKR 686

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +LSNG+DP+ +DYD+R+PLH+AA+EGLY MAKLLLE GASVFTKDRWGNTPLDE RMCGN
Sbjct: 687 LLSNGMDPNLKDYDYRSPLHIAAAEGLYFMAKLLLEGGASVFTKDRWGNTPLDEARMCGN 746

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           KNLIKLLEDA+  QLSEF   SQ   DKMHP+KCTVFP+HPWD K +RRHGIVLW+PH+I
Sbjct: 747 KNLIKLLEDAKSAQLSEF--PSQEYTDKMHPKKCTVFPYHPWDPKDNRRHGIVLWIPHSI 804

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ 516
           +ELIK A ++++F     ILSED GK+ DVDMI DGQKLYL+ ET 
Sbjct: 805 QELIKSAAEQIEFSGDACILSEDAGKVTDVDMIKDGQKLYLVHETH 850

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/447 (79%), Positives = 393/447 (87%)

Query: 65  LSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVV 124
           L  LP  +  KISQTLY  YIEKV L K CS+EFINQIVIR+HEEFFLPGEVIMEQGNVV
Sbjct: 375 LQDLPISIRAKISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLPGEVIMEQGNVV 434

Query: 125 DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184
           DQLYFVCHGVLEEVG+G+DGSEETV  L PNSSFGE+SILCNIPQPYTV +CEL RLLRI
Sbjct: 435 DQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCELCRLLRI 494

Query: 185 DKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAY 244
           DKQS +NILEIYF DGR++L NLLEGKESNL+ KQL+SDITFHIGK EAELALRVNS AY
Sbjct: 495 DKQSLSNILEIYFYDGRRILDNLLEGKESNLQYKQLESDITFHIGKQEAELALRVNSTAY 554

Query: 245 HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 304
           HGDLYQLKGLIRAGADPN+TDYDGRSPLHLA SRGYED TLFLIQ+GVDINIKDKFGNTP
Sbjct: 555 HGDLYQLKGLIRAGADPNRTDYDGRSPLHLAASRGYEDTTLFLIQEGVDINIKDKFGNTP 614

Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 364
           LLEAIK GHD V SLL ++GA LN+DDAGS LC AVARGDSDFLKRVLSNG+DP+S+DYD
Sbjct: 615 LLEAIKNGHDRVASLLSEQGAILNIDDAGSVLCRAVARGDSDFLKRVLSNGIDPNSKDYD 674

Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 424
           HRTPLHVAASEGLYLMAKLL+EAGASVF+KDRWGNTPL EGR+CGNKNLIKLLE+A+ +Q
Sbjct: 675 HRTPLHVAASEGLYLMAKLLIEAGASVFSKDRWGNTPLVEGRICGNKNLIKLLEEAKSSQ 734

Query: 425 LSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFP 484
             EFHY S    +KM P+KCT+FPFHPW  K  RR G+VLW+PH +EEL+K A +KL  P
Sbjct: 735 KLEFHYASHETTEKMLPKKCTIFPFHPWGAKEQRRPGVVLWIPHTMEELVKAASEKLQLP 794

Query: 485 DGHSILSEDGGKILDVDMINDGQKLYL 511
           DG  ILSED GKIL+VDMI+DGQKLYL
Sbjct: 795 DGSCILSEDAGKILEVDMIDDGQKLYL 821

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777957|emb|CAN64951.1| hypothetical protein VITISV_022830 [Vitis vinifera]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/461 (77%), Positives = 398/461 (86%), Gaps = 4/461 (0%)

Query: 55  YLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPG 114
           Y ++S I DL    P  +  KI+QTLY P +EKVSLF+GCS E INQIVIRVHEEFFLPG
Sbjct: 100 YTEASVIQDL----PISIRAKIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPG 155

Query: 115 EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVC 174
           EVIMEQGNVVDQLYFVCHG+LEE+G+G DGSEETV  LQPNSSFGE+SILCNIPQPYTV 
Sbjct: 156 EVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVR 215

Query: 175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAE 234
           + EL RLLR+DKQSFT+ILEIYF DGR++L NLLEGKESNLR+KQL+SDITFHIG+ EAE
Sbjct: 216 VLELCRLLRLDKQSFTDILEIYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAE 275

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           LALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGRSPLHLA++RG+EDI  FLIQ+GVD+
Sbjct: 276 LALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDV 335

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           NI D FGNTPLLEAIK  HD V SLLV +GA L +DDAG FLC  +ARGDSDFLKR+LSN
Sbjct: 336 NISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSN 395

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
           G+DP+S+DYDHRTPLHVAASEGLY MAKLLLEAGASVF+KDRWGNTPLDEG  CGNKNL+
Sbjct: 396 GIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEAGASVFSKDRWGNTPLDEGWKCGNKNLM 455

Query: 415 KLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELI 474
           KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFPFHPWD K H+R GI+LWVP  IEELI
Sbjct: 456 KLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPFHPWDPKEHKRPGIMLWVPQTIEELI 515

Query: 475 KLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISET 515
           K A + L F     ILSEDGGKILDVDMI+DGQKLYL+ ET
Sbjct: 516 KTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCET 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451365|ref|XP_002262949.1| PREDICTED: potassium channel SKOR [Vitis vinifera] gi|296087079|emb|CBI33453.3| unnamed protein product [Vitis vinifera]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/461 (77%), Positives = 397/461 (86%), Gaps = 4/461 (0%)

Query: 55  YLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPG 114
           Y ++S I DL    P  +  KI+QTLY P +EKVSLF+GCS E INQIVIRVHEEFFLPG
Sbjct: 335 YTEASVIQDL----PISIRAKIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPG 390

Query: 115 EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVC 174
           EVIMEQGNVVDQLYFVCHG+LEE+G+G DGSEETV  LQPNSSFGE+SILCNIPQPYTV 
Sbjct: 391 EVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVR 450

Query: 175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAE 234
           + EL RLLR+DKQSFT+ILEIYF DGR++L NLLEGKESNLR+KQL+SDITFHIG+ EAE
Sbjct: 451 VLELCRLLRLDKQSFTDILEIYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAE 510

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           LALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGRSPLHLA++RG+EDI  FLIQ+GVD+
Sbjct: 511 LALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDV 570

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           NI D FGNTPLLEAIK  HD V SLLV +GA L +DDAG FLC  +ARGDSDFLKR+LSN
Sbjct: 571 NISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSN 630

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
           G+DP+S+DYDHRTPLHVAASEGLY MAKLLLEA ASVF+KDRWGNTPLDEG  CGNKNL+
Sbjct: 631 GIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARASVFSKDRWGNTPLDEGWKCGNKNLM 690

Query: 415 KLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELI 474
           KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFPFHPWD K H+R GI+LWVP  IEELI
Sbjct: 691 KLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPFHPWDPKEHKRPGIMLWVPQTIEELI 750

Query: 475 KLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISET 515
           K A + L F     ILSEDGGKILDVDMI+DGQKLYL+ ET
Sbjct: 751 KTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCET 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585584|ref|XP_002533481.1| Potassium channel SKOR, putative [Ricinus communis] gi|223526674|gb|EEF28913.1| Potassium channel SKOR, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/442 (78%), Positives = 389/442 (88%)

Query: 75  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGV 134
           +ISQTLYMPYIEKV LFK CS+EFINQIVIR+HEEFFLPGEVIMEQGN VDQLYFVCHGV
Sbjct: 2   QISQTLYMPYIEKVPLFKECSAEFINQIVIRLHEEFFLPGEVIMEQGNAVDQLYFVCHGV 61

Query: 135 LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
           LE V   EDGSEET S LQPNSSFGE+SILCNIPQPYT+ +CEL RLLRIDKQSF+NILE
Sbjct: 62  LEMVATSEDGSEETASLLQPNSSFGEISILCNIPQPYTIRVCELCRLLRIDKQSFSNILE 121

Query: 195 IYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGL 254
           IYF DGRK++ N+ EGKES+LR KQL+SDITFHIGK EAELALRVNSAAYHGDLYQLKG 
Sbjct: 122 IYFYDGRKIVNNIFEGKESSLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGF 181

Query: 255 IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314
           +RAGADPN+TDYDGRSPLHLA SRGYEDI  FLIQ+GVDINIKDKFGNTPLLEAIK GHD
Sbjct: 182 VRAGADPNRTDYDGRSPLHLAASRGYEDIACFLIQEGVDINIKDKFGNTPLLEAIKSGHD 241

Query: 315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS 374
            V SLLVKEGA L +DDAGSFLC+ V +GDSD L+R+LSNG++P+S+DYDHRTPLHVAAS
Sbjct: 242 HVASLLVKEGAELRMDDAGSFLCSTVLKGDSDLLRRILSNGINPNSKDYDHRTPLHVAAS 301

Query: 375 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQG 434
           EGLY+MAKLLLEAGASV +KDRWG TPLDEGR+ GNKNLIKLLEDA+ TQLSEF   +Q 
Sbjct: 302 EGLYMMAKLLLEAGASVCSKDRWGKTPLDEGRISGNKNLIKLLEDAKSTQLSEFLPHTQE 361

Query: 435 MIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDG 494
           + DK+  RKCT+FPFHPWD K  +R GIVLWVP  +EELIK A ++L+ PD   +LS+DG
Sbjct: 362 LTDKIQRRKCTIFPFHPWDPKEQKRPGIVLWVPQTMEELIKAAAEQLNLPDDSFMLSKDG 421

Query: 495 GKILDVDMINDGQKLYLISETQ 516
           GKILDVDM++DGQ LYLISET 
Sbjct: 422 GKILDVDMVDDGQMLYLISETH 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/466 (72%), Positives = 398/466 (85%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     +L  +P  +  KISQTLY+PY++ VSLF+GCS EFINQIVIR+HEEF
Sbjct: 363 LRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEF 422

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQGNVVDQLYFVCHGVLEE+G+G+D SEET+  LQPNSSFGE+SILCNIPQP
Sbjct: 423 FLPGEVIMEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQP 482

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV +CEL RLLRIDKQSFTNIL+IYF DGRK+L NLLEGKE+NLR+KQL+SDITFHIGK
Sbjct: 483 YTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGK 542

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELAL+VNSAAYHGDLYQLKGL+RAGADPNKTDYDGRSPLHLA SRG+EDI +FLIQ+
Sbjct: 543 QEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQE 602

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
           GV+I++KD FGNTPL+EAIK G+D V  LL KEGASL VD+ GSFLCTAV+RGDSD +KR
Sbjct: 603 GVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKR 662

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +L  G+DP+S+DYD RTPLH+A SEGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGN
Sbjct: 663 LLCYGIDPNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGN 722

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           KN++KLLE+A+ +QLSE  Y S+   DK   +KCTVFPFHPWD + ++R GI+LWVP  I
Sbjct: 723 KNMLKLLEEAKASQLSESPYSSREFTDKKPTKKCTVFPFHPWDPEENKRPGIMLWVPLTI 782

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ 516
           EELIK + ++L       ILSEDGGKILDV MI++ QKLYL+ +T 
Sbjct: 783 EELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPDTH 828

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27651624|emb|CAD35400.1| shaker-like potassium channel [Vitis vinifera]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/462 (74%), Positives = 388/462 (83%), Gaps = 5/462 (1%)

Query: 55  YLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPG 114
           Y ++S I DL    P  +  KI+QTLY P +EKVSLF+GCS E INQIVIRVHEEFFLPG
Sbjct: 335 YTEASVIQDL----PISIRAKIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPG 390

Query: 115 EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVC 174
           EVIMEQGNVVDQLYFVCHG+LEE+G+G DGSEETV  LQPNSSFGE+SILCNIPQPYTV 
Sbjct: 391 EVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVR 450

Query: 175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAE 234
           + EL RLLR+DKQS   ILEIYF DGR++L NLLEGKESNLR+KQL+SDITFHIG+ EAE
Sbjct: 451 VLELCRLLRLDKQSLQIILEIYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAE 510

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           LALRVNSA+YHGDLYQLK LIRAGADPNKTDYDGRSPLHLA++RG+EDI  FLIQ+GVD+
Sbjct: 511 LALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDV 570

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           NI D FGNTPLLEAIK  HD V SLLV +GA L +DDAG FLC  +ARGDSDFLKR+LSN
Sbjct: 571 NISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCCTIARGDSDFLKRILSN 630

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNL 413
           G+DP+S+DYDH+TP+HVAAS  +    K+   +AGASVF+KDRWGNTPLDEG  CGNKNL
Sbjct: 631 GIDPNSKDYDHKTPIHVAASGRVIFYGKVAFRKAGASVFSKDRWGNTPLDEGWKCGNKNL 690

Query: 414 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEEL 473
           +KLLEDA+  QLSEF  CS+ + DKMHPRKCTVFPFHPWD K H+R GI+LWVP  IEEL
Sbjct: 691 MKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPFHPWDPKEHKRPGIMLWVPQTIEEL 750

Query: 474 IKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISET 515
           IK A + L F     ILSEDGGKILDVDMI+DGQKLYL+ ET
Sbjct: 751 IKTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCET 792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/466 (72%), Positives = 398/466 (85%)

Query: 51  IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
           + L+Y  S     +L  +P  +  KISQTLY+PY++ VSLF+GCS EFINQIVIR+HEEF
Sbjct: 363 LRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEF 422

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           FLPGEVIMEQGNVVDQLYFVCHGVLEE+G+G+D SEET+  LQPNSSFGE+SILCNIPQP
Sbjct: 423 FLPGEVIMEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQP 482

Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
           YTV +CEL RLLRIDKQSFTNIL+IYF DGRK+L NLLEGKE+NLR+KQL+SDITFHIGK
Sbjct: 483 YTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGK 542

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            EAELAL+VNSAAYHGDLYQLKGL+RAGADPNKTDYDGRSPLHLA SRG+EDI +FLIQ+
Sbjct: 543 QEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQE 602

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
           GV+I++KD FGNTPL+EAIK G+D V  LL KEGASL VD+ GSFLCTAV+RGDSD +KR
Sbjct: 603 GVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKR 662

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +L  G+DP+S+DYD RTPLH+A SEGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGN
Sbjct: 663 LLCYGIDPNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGN 722

Query: 411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
           KN++KLLE+A+ +QLSE  Y S+   DK   +KCTVFPFHPWD + ++R GI+LWVP  I
Sbjct: 723 KNMLKLLEEAKASQLSESPYSSREFTDKKPTKKCTVFPFHPWDPEENKRPGIMLWVPLTI 782

Query: 471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ 516
           EELIK + ++L       ILSEDGGKILDV MI++ QKLYL+ +T 
Sbjct: 783 EELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPDTH 828

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.901	0.561	0.666	1.3e-195
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.875	0.551	0.638	1.7e-187
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.718	0.432	0.299	4.6e-58
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.682	0.4	0.312	2.1e-57
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.697	0.448	0.307	7.9e-47
TAIR|locus:2005531	697	KAT2 "potassium channel in Ara	0.290	0.215	0.305	6.4e-25
TAIR|locus:2170468	677	KAT1 "potassium channel in Ara	0.290	0.221	0.298	8e-23
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.356	0.814	0.354	8.4e-20
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.344	0.787	0.362	1e-18
ZFIN|ZDB-GENE-041210-88	280	asb13a.2 "ankyrin repeat and S	0.344	0.635	0.335	2.2e-18

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 1602 (569.0 bits), Expect = 1.3e-195, Sum P(2) = 1.3e-195
 Identities = 310/465 (66%), Positives = 374/465 (80%)

Query:    51 IALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF 110
             + L+Y  S     +L  +P  +  KI+QTLY+PYIEKV LF+GCSSEFINQIVIR+HEEF
Sbjct:   364 LRLQYESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEF 423

Query:   111 FLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQP 170
             FLPGEVIMEQG+VVDQLYF                    + LQP+ SFGE+SILCNIPQP
Sbjct:   424 FLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQP 483

Query:   171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGK 230
             YTV + EL R+LR+DKQSF NILEI+F DGR++L NLLEGKESN+R+KQL+SDITFHI K
Sbjct:   484 YTVRVAELCRILRLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISK 543

Query:   231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
              EAELAL++NSAA++GDLYQLK LIRAG DPNKTDYDGRSPLHLA SRGYEDITL+LIQ+
Sbjct:   544 QEAELALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQE 603

Query:   291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
              VD+NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+++AG+FLCT VA+GDSDFLKR
Sbjct:   604 SVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKR 663

Query:   351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
             +LSNG+DP+S+DYDHRTPLHVAASEG Y++A  L+EA A+V  KDRWGNTPLDE   CGN
Sbjct:   664 LLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGN 723

Query:   411 KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
             K LIKLLEDA+ +Q+S F   S+   DK++ +KCTV+  HP D K  RR GIVLWVP +I
Sbjct:   724 KMLIKLLEDAKNSQISSFPSGSKEPKDKVYKKKCTVYFSHPGDSKEKRRRGIVLWVPRSI 783

Query:   471 EELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISET 515
             EELI+ A ++L+ P+   +LSED  KI+DVD+I+DGQKLYL  ET
Sbjct:   784 EELIRTAKEQLNVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 1537 (546.1 bits), Expect = 1.7e-187, Sum P(2) = 1.7e-187
 Identities = 292/457 (63%), Positives = 363/457 (79%)

Query:    64 LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
             +L  +P  +  KI+Q LY+PYI+KV LFKGCS+EFINQIVIR+HEE+FLPGEVI EQGNV
Sbjct:   360 MLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNV 419

Query:   124 VDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183
             VD LYF                    + L P++SFG++SI+CNI QP+TV +CEL  LLR
Sbjct:   420 VDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLR 479

Query:   184 IDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAA 243
             +DKQSF+NILEIYF DGR +L N++E KESN R+K+L+SDI  HIGK EAELAL+VNSAA
Sbjct:   480 LDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNSAA 539

Query:   244 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 303
             + GD YQLK LIR+GADPNKTDYDGRSPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+T
Sbjct:   540 FQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHT 599

Query:   304 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY 363
             PL EA+K G +GV  LLVKEGAS N++D+G+FLCT VA+GDSDFLKR+LS+G++P+S DY
Sbjct:   600 PLFEAVKAGQEGVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDY 659

Query:   364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423
             DHRTPLHVAASEGL+LMAK+L+EAGASV +KDRWGN+PLDE R+CGNK LIKLLED +  
Sbjct:   660 DHRTPLHVAASEGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNA 719

Query:   424 QLSEFHYCSQGMID-KMHPRKCTVFPFHPWDEKVHR--RHGIVLWVPHNIEELIKLAVDK 480
             Q S +    + + + ++  RKCTVFPFHP + K  R  +HG+V+W+P N+E+LI  A  +
Sbjct:   720 QSSIYPSSLRELQEERIERRKCTVFPFHPQEAKEERSRKHGVVVWIPSNLEKLIVTAAKE 779

Query:   481 LDFPDGHS--ILSEDGGKILDVDMINDGQKLYLISET 515
             L   DG S  +LSED G+I D+DMI+DG KLY+IS+T
Sbjct:   780 LGLSDGASFVLLSEDQGRITDIDMISDGHKLYMISDT 816

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
 Identities = 113/377 (29%), Positives = 189/377 (50%)

Query:    48 LTRIALRYLKSSFII---DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVI 104
             L  + L+Y   S  +   + L  LP  +   IS  L+   ++KV LF+G S++ + Q+V 
Sbjct:   327 LAHLCLKYRTDSEGLQQQETLDALPKAIRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVS 386

Query:   105 RVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSIL 164
              +  E+F P E ++ Q       Y                      +++     GE+ +L
Sbjct:   387 EMKAEYFPPKEDVILQNEAPTDFYILVNGTADLVDVDTGTESIVR-EVKAGDIIGEIGVL 445

Query:   165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG-KESNLR-LKQLKS 222
             C  PQ +TV    L +LLR+++ +F NI++    DG  ++ NLL+  KE N   +  +  
Sbjct:   446 CYRPQLFTVRTKRLCQLLRMNRTTFLNIIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLL 505

Query:   223 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED 282
             +I   + + + +L L +  AA   D   L  L++ G DPN++D +GR+PLH+A S+G  +
Sbjct:   506 EIENMLARGKMDLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIAASKGTLN 565

Query:   283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
               L L++   D N +D  G+ PL EA+  GH+ V  +L++ G++++  D G F CTA  +
Sbjct:   566 CVLLLLEYHADPNCRDAEGSVPLWEAMVEGHEKVVKVLLEHGSTIDAGDVGHFACTAAEQ 625

Query:   343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
             G+   LK ++ +G D +       + LH A  E    M K LLE GA V  +D  G TP 
Sbjct:   626 GNLKLLKEIVLHGGDVTRPRATGTSALHTAVCEENIEMVKYLLEQGADVNKQDMHGWTPR 685

Query:   403 DEGRMCGNKNLIKLLED 419
             D     G++++  L  +
Sbjct:   686 DLAEQQGHEDIKALFRE 702

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.1e-57, Sum P(3) = 2.1e-57
 Identities = 112/358 (31%), Positives = 186/358 (51%)

Query:    48 LTRIALRYLKSSFII---DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVI 104
             +  ++LRY   S  +   +++  LP  +   IS  L+   ++K  LF G S++ + Q+V 
Sbjct:   351 VAHLSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISNDLLFQLVS 410

Query:   105 RVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSIL 164
              +  E+F P E ++ +       Y                      + Q    FGEV +L
Sbjct:   411 EMKAEYFPPKEDVILRNEAPSDFYIMVTGAVDIIARVNGVDQVV-GEAQTGHVFGEVGVL 469

Query:   165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG-KES-NLRLKQLKS 222
             C  PQ +TV    LS+LLR+++ +F N+++    DG  ++ NLL+  K+S +  +K + +
Sbjct:   470 CYRPQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDPVMKGILA 529

Query:   223 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED 282
             +    + + + +L L +  AA  GD   L  L++ G++PN+TD +GR+ LH+A S+G + 
Sbjct:   530 ETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGSQY 589

Query:   283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
               + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F C AV +
Sbjct:   590 CVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLAVGQ 649

Query:   343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
              + + LK ++  G D S  D +  T LH A SEG   + + LLE GA +   D +G T
Sbjct:   650 NNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGWT 707

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
 Identities = 113/368 (30%), Positives = 170/368 (46%)

Query:    44 LVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIV 103
             L Y   R     L    +ID L   P  +   I Q L++P +EKV LFKG S E +  +V
Sbjct:   351 LAYMCLRFKAESLNQQHLIDQL---PKSIYKSICQHLFLPSVEKVYLFKGVSREILLLLV 407

Query:   104 IRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSI 163
              ++  E+  P E ++ Q    D +Y                     + L+    FGEV  
Sbjct:   408 SKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSEMERESVLGT-LRCGDIFGEVGA 466

Query:   164 LCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG--KESNLRLKQLK 221
             LC  PQ YT     LS+LLR+        ++I   D   +L N L+   K SNL +  LK
Sbjct:   467 LCCRPQSYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDIGDLK 526

Query:   222 SDITF-HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY 280
             +     +       +A  + +    G+   L  L++A   P+ TD  G++PLH+A SRGY
Sbjct:   527 AQQNGENTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAASRGY 586

Query:   281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV 340
             ED  L L++ G +I+I+D  GN+ L EAI   H  +  +L    A  +   AG  LC A 
Sbjct:   587 EDCVLVLLKHGCNIHIRDVNGNSALWEAIISKHYEIFRILYHFAAISDPHIAGDLLCEAA 646

Query:   341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN- 399
              + + + +K +L  G++  + D+   T L VA +E    M  LL   GA V   +     
Sbjct:   647 KQNNVEVMKALLKQGLNVDTEDHHGVTALQVAMAEDQMDMVNLLATNGADVVCVNTHNEF 706

Query:   400 TPLDEGRM 407
             TPL++ R+
Sbjct:   707 TPLEKLRV 714

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 6.4e-25, Sum P(3) = 6.4e-25
 Identities = 47/154 (30%), Positives = 75/154 (48%)

Query:    63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
             + L+ LP  +   I+  L+ P ++ V LF G S  F+ Q+V  +  E+F P E ++ Q  
Sbjct:   350 EALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNFLFQLVSDIDAEYFPPREDVILQNE 409

Query:   123 VVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182
                 LY                       +    +FGE+ +LC  PQP+TV   ELS++L
Sbjct:   410 APTDLYILVSGAVDFTVYVGEEDQVQGKAVV-GDAFGEIGVLCYTPQPFTVRTTELSQIL 468

Query:   183 RIDKQSFTNILEIYFCDGRKVLTNL---LEGKES 213
             RI K+S  + +  +  DGR ++ NL   L G++S
Sbjct:   469 RISKKSLMSAMRAHVEDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 8.0e-23, Sum P(3) = 8.0e-23
 Identities = 46/154 (29%), Positives = 73/154 (47%)

Query:    63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
             + L+ LP  +   I+  L+ P +  + LF+G S  F+ Q+V  +  E+F P E I+ Q  
Sbjct:   350 ETLNNLPKAIRSSIANYLFFPIVHNIYLFQGVSRNFLFQLVSDIDAEYFPPKEDIILQNE 409

Query:   123 VVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182
                 LY                       +    +FGEV +L   PQP+TV   ELS++L
Sbjct:   410 APTDLYILVSGAVDFTVYVDGHDQFQGKAVI-GETFGEVGVLYYRPQPFTVRTTELSQIL 468

Query:   183 RIDKQSFTNILEIYFCDGRKVLTNL---LEGKES 213
             RI + S  + +  +  DGR ++ NL   L G++S
Sbjct:   469 RISRTSLMSAMHAHADDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 8.4e-20, P = 8.4e-20
 Identities = 68/192 (35%), Positives = 104/192 (54%)

Query:   232 EAELA-LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQ 289
             EA ++ + V + AY G   +LK  + +      KTD D R+ LH A S G+ +I  FL+ 
Sbjct:     2 EARVSNVEVCNLAYGGKFEELKKCVLSDNSLAAKTDQDSRTALHWACSAGHVNIAQFLLD 61

Query:   290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCTAVARGDSDF 347
              GV++++KD    TPL  A   G + +   L+ +GA LN V+  G   L  A ++   + 
Sbjct:    62 LGVEVDLKDDACWTPLHIAASAGREEIVRSLISKGAQLNSVNQNGCTPLHYAASKNLYEI 121

Query:   348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----D 403
              + +L NG DP++ D    TPLH A+++G Y + +LLL+  AS   +D  GNTPL    D
Sbjct:   122 AQILLENGADPNATDKLQSTPLHRASAKGNYRLIQLLLKESASTNIQDSEGNTPLHLACD 181

Query:   404 EGRMCGNKNLIK 415
             E R    K L++
Sbjct:   182 EERAEAAKLLVE 193

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 67/185 (36%), Positives = 96/185 (51%)

Query:   237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
             L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct:     8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query:   296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCTAVARGDSDFLKRVLS 353
              KD  G +PL  A   G D +   L+ +GA +N V+  G   L  A ++   +    +L 
Sbjct:    68 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query:   354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCG 409
              G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+  
Sbjct:   128 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 187

Query:   410 NKNLI 414
              K L+
Sbjct:   188 AKLLV 192

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-041210-88 asb13a.2 "ankyrin repeat and SOCS box-containing 13a, tandem duplicate 2" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 61/182 (33%), Positives = 89/182 (48%)

Query:   239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
             V+ AAY G++  L+ LI +GA  N    D  +PLH A +RG       L+  G  ++ ++
Sbjct:    23 VHKAAYEGEVSVLQDLISSGASVNIVAVDSITPLHEAAARGQTQCVRLLLDAGAQVDARN 82

Query:   299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCTAVARGDSDFLKRVLSNG 355
               G+TPL EA   G+     LL+  GA +N        S L  A   G++D ++ V++ G
Sbjct:    83 VDGSTPLCEACSIGNFECVRLLLDYGAKVNPTLTSRTTSPLHEACMGGNADCVRLVIAKG 142

Query:   356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
                 + D  H TPLHVA +       K+LL AG  V    R   TPL       N N+I+
Sbjct:   143 ASLEAYDLYHGTPLHVACANRRLECVKVLLNAGVHV-NATRLHETPLHHAARTNNVNMIE 201

Query:   416 LL 417
             +L
Sbjct:   202 ML 203

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	516
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-57
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	2e-24
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-19
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	2e-17
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	3e-14
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-12
pfam11834	69	pfam11834, DUF3354, Domain of unknown function (DU	4e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-09
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	7e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
TIGR03896	317	TIGR03896, cyc_nuc_ocin, bacteriocin-type transpor	0.002
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.002
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.003
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.003

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  204 bits (521), Expect = 2e-57
 Identities = 141/471 (29%), Positives = 228/471 (48%), Gaps = 27/471 (5%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           L+  LP  +   I Q L++P +EKV LFKG S E +  +V ++  E+  P E ++ Q   
Sbjct: 355 LIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEA 414

Query: 124 VDQLYFVCHGVLEEVGV-GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182
            D +Y V  G +E +   GE   E  V  L     FGEV  LC  PQ +T     LS+LL
Sbjct: 415 PDDVYIVVSGEVEIIDSEGEK--ERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLL 472

Query: 183 RIDKQSFTNILEIYFCDGRKVLTNLLEG--KESNLRLKQLKSDITFHIGKH-EAELALRV 239
           R+   +    ++    D   +L N L+   +  +L +  L  D   + G+H +  +A  +
Sbjct: 473 RLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGD---NGGEHDDPNMASNL 529

Query: 240 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
            + A  G+   L+ L++A  DP+  D  GR+PLH+A S+GYED  L L++   +++I+D 
Sbjct: 530 LTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA 589

Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359
            GNT L  AI   H  +  +L    +  +   AG  LCTA  R D   +K +L  G++  
Sbjct: 590 NGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD 649

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF---TKDRWGNTPLDE---GRMCGNKNL 413
           S D+   T L VA +E    M +LL+  GA V    T D +  T L E    R  G+   
Sbjct: 650 SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSIT 709

Query: 414 I-KLLEDAECTQLSEFH-----YCSQGMIDKMHPRKCTVFPFHPW--DEKVHRRHGIVLW 465
           I   +   E     +              ++  PR  +++  HP   +E+     G ++ 
Sbjct: 710 IVDSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPR-VSIYKGHPLLRNERCCNEAGKLIN 768

Query: 466 VPHNIEELIKLAVDKLDFPDGHS--ILSEDGGKILDVDMINDGQKLYLISE 514
           +P ++EEL  +A +KL F D     + +E+G +I  +++I D  KL+++ +
Sbjct: 769 LPPSLEELKAIAGEKLGF-DARKAMVTNEEGAEIDSIEVIRDNDKLFVVED 818

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  121 bits (306), Expect = 5e-33
 Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 31/156 (19%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
           N  D DGR+PLHLA S G+ ++   L++ G D+N KD  G TPL  A K GH        
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------- 52

Query: 322 KEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 381
                                   + +K +L  G D ++RD D  TPLH+AA  G   + 
Sbjct: 53  -----------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           KLLL+ GA V  +D+ G TPL      G+  ++KLL
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  106 bits (266), Expect = 2e-27
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 31/144 (21%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G L  +K L+  GAD N  D DGR+PLHLA   G+ +I   L++KG D+N +DK G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           NTPL  A + G+  V  LL+K GA +N                                R
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHGADVNA-------------------------------R 102

Query: 362 DYDHRTPLHVAASEGLYLMAKLLL 385
           D D RTPLH+AA  G   + KLLL
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 41/115 (35%), Positives = 60/115 (52%)

Query: 90  LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETV 149
           LF G   E + ++   + E  F  GEVI+ QG+  D LY V  G +E   + EDG E+ V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
             L P   FGE+++L N P+  TV     S LL + +  F  +L+ Y    R++L
Sbjct: 61  GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 89.9 bits (222), Expect = 2e-20
 Identities = 69/234 (29%), Positives = 91/234 (38%), Gaps = 34/234 (14%)

Query: 188 SFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGD 247
           S + +L I  C    +L  LL     +L     K             L L +  AA    
Sbjct: 4   SLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNL--------YLELALLPAASL-- 53

Query: 248 LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307
             +L   +         D DGR PLH A S+G + I   L+  G D+N KD  G+TPL  
Sbjct: 54  -SELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHL 112

Query: 308 AIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 367
           A   G+                 +    L  A A  D + L            RD D  T
Sbjct: 113 AALNGNP-----------PEGNIEVAKLLLEAGADLDVNNL------------RDEDGNT 149

Query: 368 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
           PLH AA  G   + +LLLEAGA   +++ +G T LD     G   L+KLL D  
Sbjct: 150 PLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G+L  +K L+  GAD N  D D  + LHLA   G  +I   L++ G D+N KDK G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           NT L  A + G+  +  LL++ GA +N+ D
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 90  LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETV 149
           LFK   +E + ++   +    +  GEVI+ QG+V D  Y +  G +E   V EDG E+ V
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCI--CELSRLLRIDKQSFTNILE 194
             L P   FGE+++L N  +  +      EL+ LLRID + F  +L 
Sbjct: 61  GTLGPGDFFGELALLTNSRRAASAAAVALELATLLRIDFRDFLQLLP 107

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI 167
              F  GEVI  +G+  D LY V  G ++   + EDG E+ ++ L P   FGE+++L   
Sbjct: 1   LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGE 60

Query: 168 PQPYTVCICELSRLLRIDKQSFTNILEIY 196
           P+  TV     S LL I ++ F  +LE  
Sbjct: 61  PRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 364
           L  A K G+  +  LL+++GA +N+ D  + L  A   G+ + +K +L +G D +++D D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
             T LH+AA  G   + KLLLE GA +  KD
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 79.7 bits (197), Expect = 6e-16
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 24/184 (13%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGY-EDITLFLIQKGVDINIKDKFGNTPL---LEAI 309
           L+ AGAD N  +  G +PLHL        D+   LI+ G D+N KDK G TPL   L + 
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL-SG 127

Query: 310 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA------RGDSDFLKRVLSNGVDPSSRDY 363
              +  V  LL+++GA +N  D   +  T +A        + + L+ ++  G D  + D 
Sbjct: 128 FNINPKVIRLLLRKGADVNALDL--YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD 185

Query: 364 DHRTPLHVAASEGLYLMA-----KLLLEAGASVFTKDRWGNTPLDEGRM---CGNKNLIK 415
             R+ LH                + L+ AG      D  GNTPL        C    ++ 
Sbjct: 186 RFRSLLHHHL---QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP 242

Query: 416 LLED 419
           LL  
Sbjct: 243 LLIA 246

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 41/208 (19%)

Query: 220 LKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279
            + +    I   EA L       A +  + +++ L+ AGAD N     G++PLHL     
Sbjct: 2   EEDESVDII--MEAAL-YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYS 58

Query: 280 ---YEDITLFLIQKGVDINIKDKFGNTPL---------LEAIKCGHDGVTSLLVKEGASL 327
               +DI   L++ G D+N  ++ G TPL         L+ IK        LL+K GA +
Sbjct: 59  SEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK--------LLIKAGADV 110

Query: 328 NVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL---- 379
           N  D        +  +    +   ++ +L  G D ++ D    TPL V       L    
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV------LLKSRN 164

Query: 380 ----MAKLLLEAGASVFTKDRWGNTPLD 403
               + +LL++AGA V+  D    + L 
Sbjct: 165 ANVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
           L  A   G+ + +K +L  G D +  D D  T LH+AA  G   + KLLLE GA V  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 396 RWGNTPLDEGRMCGNKNLIKLL 417
           + GNT L      GN  ++KLL
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 28/126 (22%), Positives = 53/126 (42%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
            +++  L     SE +  + +++       GEV+  +G   D LY +  G+++     ED
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
           G E  +  L P   FGE+++L   P+  +        +L I ++ F  +L         +
Sbjct: 61  GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120

Query: 204 LTNLLE 209
           L  L  
Sbjct: 121 LRLLAR 126

Length = 214

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
           LC   A GD+   + +L+ G DP+ RDYD RTPLH+A + G   + ++LLE GA     D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 396 RWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS 432
           + G TPL+     G + +++LL         E    +
Sbjct: 146 KDGKTPLELAEENGFREVVQLLS-RHSQCHFELGANA 181

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 251 LKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309
            K L+  GAD N  D   G + LH AT    + +T  L+  G ++NI DK  N+PL  A+
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 310 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR-GDSDFLKRVLSNGVDPSSRDY-DH 365
           K  +  +  +L++ GAS +  D    + L  +V    D D LK +L +GVD +++ Y   
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425
            T LH +      L  KLLLE GA + + + +  TPL         + +K        ++
Sbjct: 270 LTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL--------SSAVKQYLCINIGRI 319

Query: 426 SEFHYCSQGMIDK 438
              + C    I  
Sbjct: 320 LISNICLLKRIKP 332

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.8 bits (173), Expect = 5e-13
 Identities = 71/245 (28%), Positives = 106/245 (43%), Gaps = 25/245 (10%)

Query: 166 NIPQPYTVCI----CELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLK 221
            IP P    I     ++ +LL ID    T+IL I   +   + T L  G + N++  +LK
Sbjct: 67  KIPHPLLTAIKIGAHDIIKLL-IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK 125

Query: 222 SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 281
           + + + I K               GDL  +K L   GAD N  D +G  P+H+A    + 
Sbjct: 126 TFLHYAIKK---------------GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFF 170

Query: 282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTA 339
           DI   L++KG   N+KD  G +PL  A + G      LL+  G  +       F  L  A
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Query: 340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRWG 398
           +    S     +L N    + +D D  TPLH A +    + +  +LL   A +  KD  G
Sbjct: 231 IIHNRS--AIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKG 288

Query: 399 NTPLD 403
             P+D
Sbjct: 289 ENPID 293

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 246 GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
           GD   ++  I+ GAD N  +     PL  A   G  DI   LI  GVD +I         
Sbjct: 46  GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-------- 97

Query: 306 LEAIKCGHDGVTSLLVKEGASLNVDDAGS--FLCTAVARGDSDFLKRVLSNGVDPSSRDY 363
              I C    +   ++  G  +N+ DA    FL  A+ +GD + +K +   G D +  D 
Sbjct: 98  --PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           +   P+H+A     + + KLLLE GA    KD  G +PL      G+   IKLL D
Sbjct: 156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211

Length = 434

>gnl|CDD|221253 pfam11834, DUF3354, Domain of unknown function (DUF3354)

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 441 PRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDV 500
           P++ T+   HP ++      G ++ +P ++EEL+++A +K  F     +L+EDG +I D+
Sbjct: 1   PKRVTIHRGHPPEKGK--EAGKLILLPGSLEELLEIAGEKFGFAPT-KVLNEDGAEIDDI 57

Query: 501 DMINDGQKLYLI 512
           ++I DG  LYL+
Sbjct: 58  EVIRDGDHLYLV 69

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 60 amino acids in length. Length = 69

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 19/168 (11%)

Query: 254 LIRAGADPNKTDYDGRSPLHLA--TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 311
           L+  GA+ N  D +G +PL  A         I  +L+  G ++NIK+  G   L   ++ 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 312 GHD--GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPL 369
                 +  LL+ +G  +N  +                +  +LS GV  + +D    TPL
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNR---------------VNYLLSYGVPINIKDVYGFTPL 196

Query: 370 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           H A         K LL+ GA+    +++G+TPL    +  NK + KLL
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 47/86 (54%)

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           L + +   A  GD    + L+  GADPN  DYDGR+PLH+A + G+  +   L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLL 320
            + DK G TPL  A + G   V  LL
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 33/156 (21%)

Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL--FLIQKGVDINIKDKFGNTPLLEA 308
           ++ L+R GAD N  D  G +PL +       ++ L   LI  G D+   D    + L   
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL--- 191

Query: 309 IKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
               H                      L     +  +  ++ ++  G DP++ D    TP
Sbjct: 192 ----H--------------------HHL--QSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 369 LHVAASEGLYLMAKL--LLEAGASVFTKDRWGNTPL 402
           LH  A+      + +  LL AG S+  ++R+G TPL
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 2   EFAFFRGLPE-NLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSF 60
           E AF    P+  L I D    + F VDI++ FF+AY D +T  LV    +IA+RYL + F
Sbjct: 82  EVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWF 141

Query: 61  IIDLLSCLPWDVI 73
           ++D+ S +P+  +
Sbjct: 142 LMDVASTIPFQAL 154

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 4e-09
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 246 GDLYQLKGLIRAGADPNKTDYDGRSPLHLATS-RGYEDITLFLIQKGVDINIKDKFGNTP 304
           G+L   + L+  G +PN   YDG SP+ LA   R  E I L L++ G   ++K     + 
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL-LMKHGAIPDVKYPDIESE 71

Query: 305 LLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           L +A++ G       L+  G   +     D  + L  A      D +K +++ G DP   
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           + D  +PLH+A   G     +LL++  A +  +D  G TPL      G+  + K+L D+
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 251 LKGLIRAGADPNKTDYDGRSPLH-LAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 308
           ++ LIRAG DP  TD  G +PLH +AT S     + L L+  G+ IN ++++G TPL  A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 309 IKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLS 353
               +      L+  GA +N   +         V   +   ++  L+
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
           +K LI  GADP+  + D  SPLHLA   G       LI     ++I+D  G TPL+ A+ 
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 311 CGHDGVTSLLVKEGASLN-VDDAG--SFLCTAVARGDSDFLKRVLSNGVD 357
            G   +  +L+  GA+++     G  + LC A+     D ++  +  G D
Sbjct: 178 KGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 57.8 bits (139), Expect = 7e-09
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  G  PN+TD DG  PLH+A+      I   L+  G D N  DK   TPL        
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 314 DGV--TSLLVKEGASLN--VDDAGSFLCTAVARGDSDFLKRVLSNG-----VDPSSRDYD 364
           + +   +LLV+ GA +N  VD+ G     A         K+++S G     VD   +++ 
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHI 177

Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
           HR   H+ +          +++ G S    D  GNTPL
Sbjct: 178 HR---HLMSDNPKASTISWMMKLGISPSKPDHDGNTPL 212

Length = 446

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGA---DPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
            LA    +    G++   K L+ AGA     N  D DG +PLH A   G  DI   L++ 
Sbjct: 111 HLAALNGNP-PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
           G D N ++ +G T L  A K G   +  LL+ +G  L                       
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL----------------SLLKFNL 213

Query: 351 VLSNGVDPSSRDYDHRTPLHVA 372
                 + S R+  + T L +A
Sbjct: 214 EGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITL-FLIQKGVDINIKDKFGNTPLLEA--IK 310
           L+  GAD N  +  G +PL+L    GY+   +  LI  G D+N  D+   TPL +A  + 
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352

Query: 311 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              D V +LL + GA++N  D    + +  A  R +   +  +L  G D  +      T 
Sbjct: 353 RNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTA 411

Query: 369 LHVA-ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK---NLIKLLED 419
           LH A      Y+  K L++ GA+V +K++  +TPL     C      ++I++L D
Sbjct: 412 LHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA--CKKNCKLDVIEMLLD 464

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 240 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKGVDINI 296
           N   Y   L  +K LI  GAD NK + DG +PL+   S GY    +I LF+I+ G D  +
Sbjct: 81  NIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL 140

Query: 297 KDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNV-------DDAGSFLCTAVARGDSD 346
            DK G T L   ++  H     +  LL+++G  +N        D    +    + R D+D
Sbjct: 141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDAD 200

Query: 347 FLKRVLSNGVDPSSRDYDHRTPL 369
            LK  + NG   +  +  H+   
Sbjct: 201 ILKLFVDNGFIINKENKSHKKKF 223

Length = 489

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           ++ A   GD+  ++ L+  G   +   Y DG +PLHLAT     DI   LI +G D +I 
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG 355
           +    +PL  A+  G      LL+   A L+++D      L  A+A+GD    K +L +G
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 356 VDPSSRDYDHRTP----LHVAASEGLYLMAKLLLEAGA 389
            +    DY  +      L  A       + +L ++ GA
Sbjct: 192 ANI---DYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  G   N  D  G +PLH A      +   +L+  G + N+ +K+G+TPL  AI   +
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN 237

Query: 314 DGVTSLLVKEGASLNV 329
             +  LL+  G S+  
Sbjct: 238 KEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
           GR+ LH A   G  ++  +L++KGVDIN  D+ GNT L  A + G+  V  LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 254 LIRAG-ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
           L+  G  D N TD +G +PLHLA   G  ++  +L++ GVD+N++D  G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRV 351
           + + K       L          +   L+ +      D  G   L +A ++GD   +K +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 352 LSNGVDPSSRDYDHRTPLHVAA-----SEGLYLMAKLLLEAGAS---VFTKDRWGNTPLD 403
           L++G D +++D D  TPLH+AA      EG   +AKLLLEAGA       +D  GNTPL 
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 404 EGRMCGNKNLIKLLEDAECTQLSEFHY 430
              + G+ ++++LL +A     S   Y
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
           DG +PLHLA   G+ ++   L++ G D+N +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDF 347
           KG  INI      TPL++AI+ G   +  L +K GA +N  +      L TA+  G  D 
Sbjct: 24  KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI 83

Query: 348 LKRVLSNGVDPS-----------------------SRDYDHRTPLHVAASEGLYLMAKLL 384
           +K ++ NGVD S                        +D + +T LH A  +G     K+L
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            E GA V  +D  G  P+         ++IKLL
Sbjct: 144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GAD N  D    +P+H A  RG   +   L+  G D+NI      + L  A+   +
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
                 ++   +++N +D    L  A+   D +    +   G   +S D    TPLH A+
Sbjct: 224 IDTIKAIIDNRSNINKNDLS--LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS 281

Query: 374 -SEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
            +  L  +   LLE GA V  K+  G TPL
Sbjct: 282 QAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 288
           AA  G L  +K L+  G D N+TD DG + LH+A   G  ++   L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            RT LH AA  G   + K LLE G  +   D  GNT L      GN  ++KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.4 bits (125), Expect = 4e-07
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 254 LIRAGADPNKTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
           L  AG   N  D    +PLH A+ +     +   L+++G D+N K+  G TPL    K G
Sbjct: 259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG 318

Query: 313 HDGVT-SLLVKEGASLNVDDAGSFLCTAVARGDS-----DFLKRVLSNGVDPSSRDYDHR 366
           +D      L+  GA +N  D      T + +  +     D +  +L  G + ++RDY  +
Sbjct: 319 YDTENIRTLIMLGADVNAAD--RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK 376

Query: 367 TPLHVAASEGLYLMAKLLLEAGASV 391
           TP+H AA     ++   LL+ GA +
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 247 DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL 305
           D   ++ LI  GAD N  D    +PLH A++    +DI + L++ G ++N +D    TP+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Query: 306 LEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFL--KRVLSNGVDPSSR 361
             A    +  + + L+  GA +       G+ L  A+  G + ++  K ++  G + +S+
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC-GTNPYMSVKTLIDRGANVNSK 438

Query: 362 DYDHRTPLHVAASEGLYL-MAKLLLEAGASV 391
           + D  TPLH A  +   L + ++LL+ GA V
Sbjct: 439 NKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)

Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSR------------------GYEDITL------- 285
           +K L+  G + N+ D+   +PLH+                       Y  + +       
Sbjct: 53  VKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112

Query: 286 -FLIQKGVDINIKDKFGNTPLLEAIKCGHDG-----VTSLLVKEGASLNVDD---AGSFL 336
              I K +  N         L+   K   D      +T LL+  GA +N+ D     + L
Sbjct: 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTAL 172

Query: 337 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 396
             A    D    + +LS G + +  D  + +PLH A       +  +LLE GAS   +D+
Sbjct: 173 HYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK 232

Query: 397 WGNTPL--DEGRMCGNKNLIKLL 417
            GNTPL    G  C + +++KLL
Sbjct: 233 CGNTPLHISVGY-CKDYDILKLL 254

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 396
           D  TPLH+AA  G   + KLLLEAGA V  +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCTAV 340
           I   L++ G D+N KD +  TP+  A + G+  + +LL+  GA +N+   D  S L  AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
              + D +K ++ N  + +  D    + L    +E L   + LL +AG SV + D   NT
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDL---SLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCKNT 275

Query: 401 PL 402
           PL
Sbjct: 276 PL 277

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 248 LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL-- 305
           +  +K +I      + +      PL+LA      D+   L+  G DIN   K  +TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 306 --LEAIKCGHD-GVTSLLVKEGASLNV-DDAGS---FLCTAVARGDSDFLKRVLSNGVDP 358
                        +  LL++ GA++N  D+ G        +        ++ +L NG + 
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 359 SSRDYDHRTPLHVAAS--------------EGLYLMAK----LLLEAGASVFTKDRWGNT 400
           + ++ D    LH+                 +G+ + AK     LL  G  +  KD +G T
Sbjct: 135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFT 194

Query: 401 PLDEGRMCGNKNLIKLL 417
           PL       N   +K L
Sbjct: 195 PLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
           + L  A   G  + +K +L  GVD +  D D  T LH+AA  G   + KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLF-LIQKGVDINIKDKFGNTPLLEAIK 310
           +++ G  P+K D+DG +PLH+  S+  +++ +  L+    D+N ++KFG++PL   IK
Sbjct: 194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK 251

Length = 446

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 352 LSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
           L +G +D ++ D +  TPLH+AA  G   + + LL+ G  +  +D  G T LD
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ AA  G+   +  L+  GAD N    D  S L  A      D    +I    +IN  D
Sbjct: 182 IHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND 241

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKE-GASLN-VDD-AGSFLCTAV-ARGDSDFLKRVLSN 354
                 LL+AI+   D  TSLL+ + G S+N +DD   + L  A  A   S  + ++L  
Sbjct: 242 ----LSLLKAIR-NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER 296

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLM-AKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKN 412
           G D ++++    TPL++ A  G      + L+  GA V   DR   TPL +      NK+
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKD 356

Query: 413 -LIKLLE 418
            +I LLE
Sbjct: 357 IVITLLE 363

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           DGR+PLHLA   G  ++   L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           DG +PLHLA   G  ++   L++ G DIN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
           Y G SPL+ A   G   I   L +   DI   D  GNT LL            ++  E  
Sbjct: 173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT-LLHL---------LVMENEFK 222

Query: 326 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS----RDYDHRTPLHVAASEGLYLMA 381
           +             ++    +F   +L    D        ++   TPL +AA EG  ++ 
Sbjct: 223 AEY---------EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF 273

Query: 382 KLLLEAGASVFTKDRWGNTPL 402
           +L L           W N   
Sbjct: 274 RLKLAIKYKQKKFVAWPNGQQ 294

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           GNTPL  A + GH  V  LL++ GA +N  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 319 LLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372
           LL      LN  D      L  A   G  + ++ +L  GVD + RD D  T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 305 LLEAIKCGHDGVTSLLVKEGASLN--VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           L +AI  G   +   L+  G + N  + D  S +  A+   DS+ +K ++ +G  P  + 
Sbjct: 6   LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65

Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGA---SVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            D  + LH A  EG     + LL+ G     VF KD  G TPL    +    +++KLL
Sbjct: 66  PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLL 121

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 287 LIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
           L++ G +D+N  D  GNTPL  A K G   +   L+K G  LN+ D+
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS 47

Length = 56

>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 114 GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL-CNIPQPYT 172
           G +++ +G  VD LY + +G    + +  DG    V   +     GE   L  ++P   T
Sbjct: 169 GTILIHEGGTVDALYILLYGEA-SLSISPDGPGREVGSSRRGEILGETPFLNGSLPGTAT 227

Query: 173 VCICELSRLLRIDKQSFTNILE 194
           V   E S LL IDKQ     L+
Sbjct: 228 VKAIENSVLLAIDKQQLAAKLQ 249

Members of this protein family are uncharacterized and contain two copies of the cyclic nucleotide-binding domain pfam00027. Members are restricted to select cyanobacteria but are found regularly in association with a transport operon that, in turn, is associated with the production of putative bacteriocins. The models describing the transport operon are TIGR03794, TIGR03796, and TIGR03797. Length = 317

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 43/203 (21%)

Query: 175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLK-SDITFHIGKHEA 233
           +C +  L R DK++ + IL+    D   VL ++L        ++ +   DI   + +   
Sbjct: 305 MCSIVPLWRNDKETISLILKTMNSD---VLQHIL--------IEYMTFGDIDIPLVECML 353

Query: 234 ELALRVNSAAYHG-------DLYQLKGLIRA-GADPNKTDYDGRSPL-HLATSR-GYEDI 283
           E    VN  A HG       D Y +K L++  G D      DG  P+ HL  S  G  + 
Sbjct: 354 EYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNF 413

Query: 284 TLFLIQKGV---------------------DINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
             +  +KG+                     DIN+ DK G T L +A++     + SLL++
Sbjct: 414 YTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLE 473

Query: 323 EGASLNVDDAGSFLCTAVARGDS 345
            G+ +N+     + C A+A  +S
Sbjct: 474 SGSDVNIRSNNGYTCIAIAINES 496

Length = 661

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 250 QLKGLIRAGADPN-KTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307
           +LK L+  GAD N K    G +PLH+A  ++ YE  T    Q GV++ I +    TP   
Sbjct: 73  KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV 132

Query: 308 AIKCGHDGVTSLLVKEGASLNV 329
           A +     + ++L  +GA   V
Sbjct: 133 ACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ A Y+ +   +K L+  GA+PN  +  G +PLH+A     ++I   L+  G  I    
Sbjct: 196 LHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII 255

Query: 299 KF 300
           + 
Sbjct: 256 ET 257

Length = 422

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 41/182 (22%)

Query: 251 LKGLIRAGADPNKTDYDGRSPLH--LATSRGYE---DITLFLIQKGVDINIKDKFGNTPL 305
           +K  I  GA+ N  D +  +PL   L+  + Y+   DI   LI+ G DIN K+  G TPL
Sbjct: 54  VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113

Query: 306 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 365
              +  G+             +N               + + L  ++ NG D +  D D 
Sbjct: 114 YCLLSNGY-------------IN---------------NLEILLFMIENGADTTLLDKDG 145

Query: 366 RTPLHVAASEGLYL---MAKLLLEAGASVFTKDRW-GNTPLD----EGRMCGNKNLIKLL 417
            T L V      ++   + KLLLE G  + T +       L           + +++KL 
Sbjct: 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205

Query: 418 ED 419
            D
Sbjct: 206 VD 207

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	516
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.57
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.47
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.46
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.46
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.46
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
PLN02868	413	acyl-CoA thioesterase family protein	99.35
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.34
COG2905	610	Predicted signal-transduction protein containing c	99.31
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.27
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.25
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.24
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.19
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.06
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.06
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.02
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.88
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.82
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.77
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.73
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0522	560	consensus Ankyrin repeat protein [General function	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.52
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.45
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.44
KOG0511	516	consensus Ankyrin repeat protein [General function	98.35
KOG2384	223	consensus Major histocompatibility complex protein	98.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.3
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.22
KOG0511	516	consensus Ankyrin repeat protein [General function	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.06
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.52
KOG2505	591	consensus Ankyrin repeat protein [General function	97.12
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.03
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	96.97
KOG2505	591	consensus Ankyrin repeat protein [General function	96.85
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	96.75
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	96.73
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.31
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.34
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.12
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.04
PF00520	200	Ion_trans: Ion transport protein calcium channel s	93.21
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	92.91
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.42
cd01615	78	CIDE_N CIDE_N domain, found at the N-terminus of t	85.78
cd06537	81	CIDE_N_B CIDE_N domain of CIDE-B proteins. The CID	85.61
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.48
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	83.22
cd06539	78	CIDE_N_A CIDE_N domain of CIDE-A proteins. The CID	81.6

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=6.8e-77  Score=646.35  Aligned_cols=512  Identities=30%  Similarity=0.478  Sum_probs=440.5

Q ss_pred             CeeecccCCC-CCchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCHHHHH-----
Q 010168            1 MEFAFFRGLP-ENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY-----   74 (516)
Q Consensus         1 ~~~~f~~~~~-~~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~~~~~-----   74 (516)
                      |+++|....+ ..|+++|+++|++|++||+++|+|+|++.+++.+|.||++|++||+++||++|++|++|++++.     
T Consensus        81 ~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~  160 (823)
T PLN03192         81 FEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITG  160 (823)
T ss_pred             HHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcC
Confidence            5788876543 4599999999999999999999999999999889999999999999999999999999997642     


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       161 ~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~  240 (823)
T PLN03192        161 TVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIP  240 (823)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       241 ~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~  320 (823)
T PLN03192        241 NFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAA  320 (823)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcc
Q 010168           75 ---------------------------------------------KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEE  109 (516)
Q Consensus        75 ---------------------------------------------~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~  109 (516)
                                                                   +|+.+++.++++++++|++++++++.+++..++.+
T Consensus       321 ~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~  400 (823)
T PLN03192        321 SNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAE  400 (823)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhhee
Confidence                                                         77778888999999999999999999999999999


Q ss_pred             eeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccch
Q 010168          110 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSF  189 (516)
Q Consensus       110 ~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~  189 (516)
                      .|+|||.|+.|||.++.+|||.+|.|+++. ..+|++.++..+.+|++|||.+++.+.|++++++|.+.|+++.+++++|
T Consensus       401 ~~~pge~I~~qge~~~~lY~I~~G~V~i~~-~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f  479 (823)
T PLN03192        401 YIPPREDVIMQNEAPDDVYIVVSGEVEIID-SEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTL  479 (823)
T ss_pred             eeCCCCEEEECCCCCceEEEEEecEEEEEE-ecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHH
Confidence            999999999999999999999999999986 5567888999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhccchhhhhhhhhccchhhhh--hhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 010168          190 TNILEIYFCDGRKVLTNLLEGKESNLRL--KQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD  267 (516)
Q Consensus       190 ~~ll~~~~~~~~~~l~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  267 (516)
                      .++++.+|..+..+++.++++.......  ..+..+..  ....+..+.++||.||..|+.++++.|++.|+++|..|..
T Consensus       480 ~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~--~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~  557 (823)
T PLN03192        480 IEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNG--GEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK  557 (823)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcc--cccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            9999999999999998888654321111  11111111  1123345679999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHH
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF  347 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~  347 (516)
                      |+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|++.++..+...+.++||.|+..|+.++
T Consensus       558 G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~  637 (823)
T PLN03192        558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTA  637 (823)
T ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888888899999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHH--HHcccCc
Q 010168          348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG-NTPLDEGRMCGNKNLIKLL--EDAECTQ  424 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~tpl~~A~~~~~~~~v~~L--~~~~~~~  424 (516)
                      ++.|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..| .||++++......+...-+  .+.....
T Consensus       638 v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~~~~~~~~~~~~~~~  717 (823)
T PLN03192        638 MKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPAD  717 (823)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhhhCceeeeccCCCcc
Confidence            999999999999999999999999999999999999999999999999988 9999888654433321111  1110000


Q ss_pred             --------cccccccCccccccCCCcceeecCCCCCCccc--ccccceEEEcCCcHHHHHHHHhhhcCCCCCCcc-cccC
Q 010168          425 --------LSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV--HRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSI-LSED  493 (516)
Q Consensus       425 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~-~~~~  493 (516)
                              .+................+....+.|+...+.  ....++++++|.+++|+++.+++|+|++...++ .++|
T Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  797 (823)
T PLN03192        718 EPDLGRDGGSRPGRLQGTSSDNQCRPRVSIYKGHPLLRNERCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEE  797 (823)
T ss_pred             ccccccccccccccccccccccccCceEEEecCCCcccccccccccCeEEeCCccHHHHHHHHHHHhCCCcccceeecCC
Confidence                    00000111111123344566888999877655  558999999999999999999999999987765 6999


Q ss_pred             CceEEEEeeeecCCeEEEeecC
Q 010168          494 GGKILDVDMINDGQKLYLISET  515 (516)
Q Consensus       494 ~~~i~d~~~~~~~~~~~~~~~~  515 (516)
                      ||+|+|++|||||||||+++++
T Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~  819 (823)
T PLN03192        798 GAEIDSIEVIRDNDKLFVVEDE  819 (823)
T ss_pred             CceeeeeEEEecCCEEEEeecc
Confidence            9999999999999999999986

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-39  Score=329.65  Aligned_cols=299  Identities=34%  Similarity=0.541  Sum_probs=241.2

Q ss_pred             CeeecccC----------CCCCchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCH
Q 010168            1 MEFAFFRG----------LPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPW   70 (516)
Q Consensus         1 ~~~~f~~~----------~~~~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~   70 (516)
                      |.++|...          ...++.++|.++|++|++||++||+|+|+++.+.++|.|||+||+||+++||++|++|++|+
T Consensus        97 ~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~  176 (727)
T KOG0498|consen   97 LFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPF  176 (727)
T ss_pred             ceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcCh
Confidence            46677766          56779999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH----------------------------------------------------------------------------
Q 010168           71 DVIY----------------------------------------------------------------------------   74 (516)
Q Consensus        71 ~~~~----------------------------------------------------------------------------   74 (516)
                      +++.                                                                            
T Consensus       177 ~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia  256 (727)
T KOG0498|consen  177 DQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIA  256 (727)
T ss_pred             hhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9883                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       257 ~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~  336 (727)
T KOG0498|consen  257 IERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLF  336 (727)
T ss_pred             hcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------HHHHHh
Q 010168           75 --------------------------------------------------------------------------KISQTL   80 (516)
Q Consensus        75 --------------------------------------------------------------------------~i~~~~   80 (516)
                                                                                                +|++|+
T Consensus       337 A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL  416 (727)
T KOG0498|consen  337 AYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL  416 (727)
T ss_pred             HHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence                                                                                      999999


Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeee-
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG-  159 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fG-  159 (516)
                      |.++++++|+|++++++.+.+|+..++...|+|||+|++|||+.+.||||.+|.+++.. +.+|.+.....+++|++|| 
T Consensus       417 ~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~-~~~g~~~~~~~L~~Gd~~Ge  495 (727)
T KOG0498|consen  417 CLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT-TDGGGFFVVAILGPGDFFGE  495 (727)
T ss_pred             hHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE-ccCCceEEEEEecCCCccch
Confidence            99999999999999999999999999999999999999999999999999999999987 4455778899999999999 


Q ss_pred             ccccccC-CCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhh---hhhccchhhhhhhhccccccccccchhhh
Q 010168          160 EVSILCN-IPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTN---LLEGKESNLRLKQLKSDITFHIGKHEAEL  235 (516)
Q Consensus       160 e~~ll~~-~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~---ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (516)
                      |+...+. .|.++||+|.+.|+++.+..+++..+++.++.++..+++.   +...+...-....+.....-+...+. ..
T Consensus       496 El~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~-~~  574 (727)
T KOG0498|consen  496 ELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKG-EE  574 (727)
T ss_pred             HHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhc-cc
Confidence            8888777 8889999999999999999999999999999999998884   43333222221111111110000000 00


Q ss_pred             HHHH--HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Q 010168          236 ALRV--NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG  301 (516)
Q Consensus       236 ~t~L--~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g  301 (516)
                      ..+.  -.++..++..-....+..+..++..+.+|.+++|.++..|...+...++.++++++..+..+
T Consensus       575 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~  642 (727)
T KOG0498|consen  575 ELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAEG  642 (727)
T ss_pred             hhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCcccccc
Confidence            0011  11223333333344556677778888888889998888888888888888888888877666

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=261.66  Aligned_cols=184  Identities=28%  Similarity=0.342  Sum_probs=166.6

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCChHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIR-AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A  308 (516)
                      .+.+++||||+||..|+.+++++|++ .+..+|.+|..||||||+||..|+.++|+.|+.+ |+|+|..+..|.||||||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence            34478999999999999999999995 4788899999999999999999999999999998 999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          309 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       309 ~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      +..|+.+++++|+++|+.++.++  +.||||.|+..|+++++++|+..|+.+|.+|..|+||||.|...|+.+...+|++
T Consensus       114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            99999999999999999998877  6799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          387 AGASVFTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       387 ~g~~~~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                      +|++.+..|+.| ||+..|+..=...+.+
T Consensus       194 ~gAd~~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  194 AGADTDREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             hccceeeccccC-chHHHHHHHHHHHHHH
Confidence            999999999988 9988887543333333

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-37  Score=256.98  Aligned_cols=192  Identities=31%  Similarity=0.410  Sum_probs=177.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcCCCCCCChHHHHHHHc
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDY-DGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKC  311 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~~~  311 (516)
                      +.++.+.+|...-..-++.++++.. +++.++. +|+|||||||+.|+.+++.+|+ +.+..+|.+|..||||||.||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            3466778888888888888888765 6788776 9999999999999999999999 56888999999999999999999


Q ss_pred             CChHHHHHHHHc-CCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          312 GHDGVTSLLVKE-GASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       312 ~~~~~v~~Ll~~-g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      |+.++|+.|+.+ |+++|...  |.|+||+|+.+|..+++++|+++|+.++.+|..|+||||.|+..|+.+++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            999999999998 99999854  679999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       389 ~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      +.+|.+|+.|+||||.|...|+.+...+|+++||+...
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceee
Confidence            99999999999999999889999999999999997543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=285.61  Aligned_cols=194  Identities=22%  Similarity=0.169  Sum_probs=178.5

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      ..+..|.||||+|+..|+.++++.|++.|++++..+  |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            356679999999999999999999999999998764  789999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcCC--c-chHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHH
Q 010168          310 KCGHDGVTSLLVKEGASLNVDD--A-GSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLL  385 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~~--~-~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll  385 (516)
                      ..|+.+++++|+++|++++..+  + .||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..|+.+++++|+
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999998654  3 48999999999999999999987543  23 25899999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          386 EAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       386 ~~g~~~~~~~~~g~tp-l~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                      ++|++++.+|..|.|| ||+|+..|+.+++++|+++|++...+
T Consensus       181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence            9999999999999987 99999999999999999999987544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=273.44  Aligned_cols=217  Identities=17%  Similarity=0.176  Sum_probs=188.3

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+.+.+..+...........++......+.  .  .+.||||.|+..|+.++++.|++.|++++.+|..|+||||+|+..
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~  104 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS  104 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcC--C--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            456666666666655555555544433322  2  257999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCC-hHHHHHHHcCChHHHHHHHHcCCCCC-cCCcchHHHHHHHcCCHHHHHHHHHCCC
Q 010168          279 GYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCTAVARGDSDFLKRVLSNGV  356 (516)
Q Consensus       279 g~~~~v~~Ll~~g~~~~~~d~~g~-tpL~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~l~~A~~~~~~~~v~~Ll~~g~  356 (516)
                      |+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++.. ...+.||||+|+..|+.+++++|+++|+
T Consensus       105 g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA  184 (284)
T PHA02791        105 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT  184 (284)
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999885 99999999999999999999986543 2357899999999999999999999999


Q ss_pred             CCCCCCCCCCcH-HHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          357 DPSSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       357 ~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      +++.++..|.|| ||+|+..|+.++|++|+++|++++.+|..| |||      ++.|++++|+++.++-.+
T Consensus       185 d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        185 STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhcc
Confidence            999999999987 999999999999999999999999999954 777      899999999998876544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-35  Score=294.99  Aligned_cols=220  Identities=22%  Similarity=0.165  Sum_probs=160.1

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED  282 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  282 (516)
                      .+..++..+.......++......  +.....|.||||.|+..|+.+++++|++.|++++..+..+.||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~iv~~Ll~~g~~~--n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          5 ALCDAILFGELDIARRLLDIGINP--NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            344555555555555555444333  233445777888888888888888887777777777777778888888888888


Q ss_pred             HHHHHHHcCCCCc-CCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 010168          283 ITLFLIQKGVDIN-IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS  359 (516)
Q Consensus       283 ~v~~Ll~~g~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~  359 (516)
                      ++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            8888887776653 345667788888888888888888888777776643  5677888888888888888888777777


Q ss_pred             CCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       360 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      .+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|++.
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            7777788888888888888888888888887777777664 6777777778888888888777754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=293.49  Aligned_cols=217  Identities=27%  Similarity=0.319  Sum_probs=196.8

Q ss_pred             hhhccchhhhhhhhccccccccccchhhhHHHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHH
Q 010168          207 LLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAA--YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YED  282 (516)
Q Consensus       207 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g--~~~  282 (516)
                      +...........++......  +..+..|.||||+|+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANV--NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCC--CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH
Confidence            33333333443344333333  556777899999999  999999999999999999999999999999999999  999


Q ss_pred             HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--c------chHHHHHHHcCC--HHHHHHHH
Q 010168          283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--A------GSFLCTAVARGD--SDFLKRVL  352 (516)
Q Consensus       283 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~------~~~l~~A~~~~~--~~~v~~Ll  352 (516)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +      .+|||.|+..|+  .+++++|+
T Consensus       158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll  237 (480)
T PHA03100        158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL  237 (480)
T ss_pred             HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754  3      789999999999  99999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       353 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|++..
T Consensus       238 ~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        238 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-34  Score=295.80  Aligned_cols=243  Identities=24%  Similarity=0.279  Sum_probs=214.8

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHH-----HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNS-----AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLH  273 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh  273 (516)
                      .+...+..+...+.......++......  +..+..+.||||.     |+..|+.++++.|++.|++++..|..|.||||
T Consensus        34 ~~~t~L~~A~~~~~~~ivk~Ll~~g~~~--~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         34 KPVLPLYLAKEARNIDVVKILLDNGADI--NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLL  111 (480)
T ss_pred             ccchhhhhhhccCCHHHHHHHHHcCCCC--CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhh
Confidence            4455666666666666666665554433  3445567899999     99999999999999999999999999999999


Q ss_pred             HHH--HcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC--ChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHH
Q 010168          274 LAT--SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDF  347 (516)
Q Consensus       274 ~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~  347 (516)
                      +|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++..+  |.||||+|+..|+.++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            999  999999999999999999999999999999999999  9999999999999998754  6799999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCC------CcHHHHHHHhCh--HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          348 LKRVLSNGVDPSSRDYDH------RTPLHVAASEGL--YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g------~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      +++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       192 v~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~  271 (480)
T PHA03100        192 IKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD  271 (480)
T ss_pred             HHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999988      899999999999  999999999999999999999999999999999999999999


Q ss_pred             cccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          420 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +|++...              ....+.+|+|.+...++
T Consensus       272 ~gad~n~--------------~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        272 LGANPNL--------------VNKYGDTPLHIAILNNN  295 (480)
T ss_pred             cCCCCCc--------------cCCCCCcHHHHHHHhCC
Confidence            9995533              33445678888776666

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=284.22  Aligned_cols=194  Identities=25%  Similarity=0.263  Sum_probs=185.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      .+++||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCc---CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          315 GVTSLLVKEGASLNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~---~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      +++++|++.|+..+.   .++.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            999999999986643   45789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccc
Q 010168          392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF  428 (516)
Q Consensus       392 ~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~  428 (516)
                      +.+|..|+||||+|+..|+.+++++|+++|++.....
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~  198 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFG  198 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCC
Confidence            9999999999999999999999999999999886544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=291.71  Aligned_cols=206  Identities=30%  Similarity=0.371  Sum_probs=181.6

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-------------------------------
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE-------------------------------  281 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~-------------------------------  281 (516)
                      ..+.||||.||..|+.++|+.|++.|+++|.+|..|+||||+||..|+.                               
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            4567899999999999999999999999999999999999999986543                               


Q ss_pred             ---------------------------------HHHHHHHHcCCCCcCCCCC-CChHHHHHHHcCChHHHHHHHHcCCCC
Q 010168          282 ---------------------------------DITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASL  327 (516)
Q Consensus       282 ---------------------------------~~v~~Ll~~g~~~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~g~~~  327 (516)
                                                       +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                             2677778889999999988 999999999999999999999999999


Q ss_pred             CcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh-ChHHHHHHHHHcCCCCCCCCC-CCCCHHH
Q 010168          328 NVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDR-WGNTPLD  403 (516)
Q Consensus       328 ~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~g~tpl~  403 (516)
                      +..+  |.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            8754  67999999999999999999999999999999999999999976 689999999999999999886 7999999


Q ss_pred             HHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCc
Q 010168          404 EGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  454 (516)
Q Consensus       404 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (516)
                      +|  .++.+++++|+++|++....              ...+.+|+|.+..
T Consensus       275 ~A--~~~~~~v~~Ll~~gadin~~--------------d~~g~TpL~~A~~  309 (477)
T PHA02878        275 SS--IKSERKLKLLLEYGADINSL--------------NSYKLTPLSSAVK  309 (477)
T ss_pred             HH--ccCHHHHHHHHHCCCCCCCc--------------CCCCCCHHHHHHH
Confidence            99  57889999999999976443              3344567766654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.7e-33  Score=281.15  Aligned_cols=228  Identities=21%  Similarity=0.262  Sum_probs=192.0

Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcC-CCCCCCh
Q 010168          227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINI-KDKFGNT  303 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~-~d~~g~t  303 (516)
                      ..+..+..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..+  ..+++++|+++|++++. .|..|.|
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            34566778999999999999999999999999999999999999999999866  48999999999999995 6899999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC--h
Q 010168          304 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARG--DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG--L  377 (516)
Q Consensus       304 pL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~  377 (516)
                      ||| ||..|+.+++++|+++|++++..+  |+||||+|+..+  +.+++++|+++|++++.+|..|+||||+|+..|  +
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            997 677899999999999999988755  779999988755  468999999999999999999999999999986  8


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcccCcccccc-cc----Cccc---cccCCCcceeecC
Q 010168          378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAECTQLSEFH-YC----SQGM---IDKMHPRKCTVFP  448 (516)
Q Consensus       378 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~-~~~v~~L~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~  448 (516)
                      .+++++|++ |+++|.+|..|+||||+|+..++ .+++++|+++|+....... .+    ....   .... ....+.+|
T Consensus       223 ~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~-g~~~~~Tp  300 (446)
T PHA02946        223 VDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDK-GKQYDSTD  300 (446)
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHc-CcccCCCH
Confidence            899999985 89999999999999999999988 4899999999876432210 00    0000   0000 11234589


Q ss_pred             CCCCCcccc
Q 010168          449 FHPWDEKVH  457 (516)
Q Consensus       449 ~~~~~~~~~  457 (516)
                      +|.|+..++
T Consensus       301 Lh~Aa~~g~  309 (446)
T PHA02946        301 FKMAVEVGS  309 (446)
T ss_pred             HHHHHHcCC
Confidence            999988888

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-33  Score=288.86  Aligned_cols=242  Identities=25%  Similarity=0.314  Sum_probs=198.4

Q ss_pred             chhhhhhhhhcc---chhhhhhhhccccccccccchhhhHHHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 010168          200 GRKVLTNLLEGK---ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHG-DLYQLKGLIRAGADPNKTDYDGRSPLHLA  275 (516)
Q Consensus       200 ~~~~l~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A  275 (516)
                      +.+.++.++...   .......++....  ..+..+..|.||||+|+..| +.+++++|++.|++++.+|..|+||||+|
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga--din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a  124 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGA--DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY  124 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            445555555444   3333333443333  33445557899999999999 59999999999999999999999999999


Q ss_pred             H--HcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC--ChHHHHHHHHcCCCCCcCC--cchHHHHHHHc--CCHHH
Q 010168          276 T--SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCTAVAR--GDSDF  347 (516)
Q Consensus       276 ~--~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~--~~~~~  347 (516)
                      +  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|+++|++++..+  +.||||.|+..  ++.++
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i  204 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI  204 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHH
Confidence            9  456889999999999999999999999999988876  5789999999998887654  67899998865  77899


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhChH--HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLY--LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      ++.|+++|++++.+|..|+||||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus       205 ~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n  284 (471)
T PHA03095        205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN  284 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999865  68899999999999999999999999999999999999999999654


Q ss_pred             ccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          426 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      .              ....+.+|+|.+...++
T Consensus       285 ~--------------~~~~g~tpl~~A~~~~~  302 (471)
T PHA03095        285 A--------------VSSDGNTPLSLMVRNNN  302 (471)
T ss_pred             c--------------cCCCCCCHHHHHHHhCC
Confidence            3              23345588888877766

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-33  Score=283.04  Aligned_cols=223  Identities=25%  Similarity=0.278  Sum_probs=133.8

Q ss_pred             chhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCC--------------------
Q 010168          200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA--------------------  259 (516)
Q Consensus       200 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------------------  259 (516)
                      +...+..++..+.......++.....+  +..+..+.||||.|+..|+.+++++|++.|+                    
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            344455555555444444444333222  2333445566666666666666666655443                    


Q ss_pred             ---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cch
Q 010168          260 ---DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS  334 (516)
Q Consensus       260 ---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~  334 (516)
                         +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t  192 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES  192 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence               334455556666666666666666666666666666666666666666666666666666666666555432  446


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHH
Q 010168          335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNL  413 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~-~~~~  413 (516)
                      |||+|+..|+.+++++|+++|++++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+ +.++
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~i  270 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDI  270 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHH
Confidence            6666666666666666666666666666666666666665543 3444444 45667777888888888888765 7888


Q ss_pred             HHHHHHcccCccc
Q 010168          414 IKLLEDAECTQLS  426 (516)
Q Consensus       414 v~~L~~~~~~~~~  426 (516)
                      +++|+++|++...
T Consensus       271 v~~Ll~~gad~n~  283 (434)
T PHA02874        271 IDILLYHKADISI  283 (434)
T ss_pred             HHHHHHCcCCCCC
Confidence            8999888886543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=284.18  Aligned_cols=229  Identities=25%  Similarity=0.265  Sum_probs=203.5

Q ss_pred             cccchhhhHHHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCCCCh
Q 010168          228 IGKHEAELALRVNSAAYHG---DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNT  303 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~t  303 (516)
                      .+..+..|.||||.|+..|   +.++++.|++.|+++|.++..|+||||+|+..| +.+++++|+++|++++.+|..|.|
T Consensus        40 vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~t  119 (471)
T PHA03095         40 VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRT  119 (471)
T ss_pred             cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3455667899999999999   999999999999999999999999999999999 599999999999999999999999


Q ss_pred             HHHHHH--HcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh--
Q 010168          304 PLLEAI--KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARG--DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE--  375 (516)
Q Consensus       304 pL~~A~--~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--  375 (516)
                      |||+|+  ..++.+++++|+++|++++..+  +.||||.|+..+  +.+++++|+++|++++..+..|+||||+|+..  
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~  199 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFK  199 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCC
Confidence            999999  5568899999999999998754  679999998876  68999999999999999999999999999875  


Q ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCC
Q 010168          376 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD  453 (516)
Q Consensus       376 g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~--~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (516)
                      ++.++++.|+++|++++.+|..|+||||+|+..|+.  .+++.|++.|++...              +...+.+|+|.|+
T Consensus       200 ~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~--------------~d~~g~TpLh~A~  265 (471)
T PHA03095        200 PRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA--------------RNRYGQTPLHYAA  265 (471)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCC--------------cCCCCCCHHHHHH
Confidence            688999999999999999999999999999999975  688899999985432              3355679999998


Q ss_pred             cccccccceEEEcCCcHHHHHHHHhh
Q 010168          454 EKVHRRHGIVLWVPHNIEELIKLAVD  479 (516)
Q Consensus       454 ~~~~~~~~~~~~~p~~~~~l~~~~~~  479 (516)
                      ..++         +..++.|++.|++
T Consensus       266 ~~~~---------~~~v~~LL~~gad  282 (471)
T PHA03095        266 VFNN---------PRACRRLIALGAD  282 (471)
T ss_pred             HcCC---------HHHHHHHHHcCCC
Confidence            8877         5666777765543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=283.20  Aligned_cols=199  Identities=26%  Similarity=0.268  Sum_probs=179.1

Q ss_pred             ccccchhhhHHHHHHHHhc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCcCCC
Q 010168          227 HIGKHEAELALRVNSAAYH-----GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG---YEDITLFLIQKGVDINIKD  298 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~~~~d  298 (516)
                      +.+..+..|.||||.|+..     +..++++.|+++|+++|.+|..|+||||+|+.++   +.+++++|+++|++++.+|
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d  142 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD  142 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC
Confidence            4456667899999998864     6799999999999999999999999999999876   7899999999999999999


Q ss_pred             CCCChHHHHHHHcCC---hHHHHHHHHcCCCCCcCC---cchHHHHHHHc----CCHHHHHHHHHCCCC-----------
Q 010168          299 KFGNTPLLEAIKCGH---DGVTSLLVKEGASLNVDD---AGSFLCTAVAR----GDSDFLKRVLSNGVD-----------  357 (516)
Q Consensus       299 ~~g~tpL~~A~~~~~---~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~----~~~~~v~~Ll~~g~~-----------  357 (516)
                      ..|.||||+|+..++   .+++++|+++|++++..+   +.||||.++..    ++.+++++|+++|++           
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~  222 (489)
T PHA02798        143 KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKK  222 (489)
T ss_pred             CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccch
Confidence            999999999999998   999999999999998753   56899988764    478888888887764           


Q ss_pred             ----------------------------CCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 010168          358 ----------------------------PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  409 (516)
Q Consensus       358 ----------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  409 (516)
                                                  +|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.++
T Consensus       223 ~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        223 FMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence                                        4456778999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcccCcc
Q 010168          410 NKNLIKLLEDAECTQL  425 (516)
Q Consensus       410 ~~~~v~~L~~~~~~~~  425 (516)
                      +.++++.|++.+++..
T Consensus       303 ~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        303 SKFIFNSILNKKPNKN  318 (489)
T ss_pred             cHHHHHHHHccCCCHH
Confidence            9999999999998775

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.5e-32  Score=286.17  Aligned_cols=196  Identities=19%  Similarity=0.174  Sum_probs=173.3

Q ss_pred             cccc-hhhhHHHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCcCCCCCCC
Q 010168          228 IGKH-EAELALRVNSAAY--HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGN  302 (516)
Q Consensus       228 ~~~~-~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~g~~~~~~d~~g~  302 (516)
                      .+.. +..|.||||.|+.  .++.+++++|+++|+++|.+|..|+||||+|+..|+  .++|++|+++|+++|.+|..|.
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~  248 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGM  248 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            3444 5678999999875  467999999999999999999999999999999995  5999999999999999999999


Q ss_pred             hHHHHH-------------------------------------HHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHH--
Q 010168          303 TPLLEA-------------------------------------IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVA--  341 (516)
Q Consensus       303 tpL~~A-------------------------------------~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~--  341 (516)
                      ||||+|                                     +..|+.+++++|+++|++++.++  |+||||+|+.  
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            999975                                     34578899999999999998755  7799999875  


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--------------hChHHHHHHHHHcCCCCCCCCCCCCCHHHH---
Q 010168          342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS--------------EGLYLMAKLLLEAGASVFTKDRWGNTPLDE---  404 (516)
Q Consensus       342 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--------------~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~---  404 (516)
                      .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|+||||.   
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~  408 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYIC  408 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHH
Confidence            467899999999999999999999999999875              368999999999999999999999999993   


Q ss_pred             -HHHcCCHHHHHHHHHcccC
Q 010168          405 -GRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       405 -A~~~~~~~~v~~L~~~~~~  423 (516)
                       |...++.+++++|++.|+.
T Consensus       409 ~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        409 TAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             HHHhcChHHHHHHHHhCcch
Confidence             3345789999999998754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.7e-32  Score=277.68  Aligned_cols=207  Identities=24%  Similarity=0.233  Sum_probs=182.9

Q ss_pred             hHHHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          235 LALRVNSAAY--HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       235 ~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..++||.++.  .++.++++.|+++|+++|.+|.+|+||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            3678887764  45789999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C--hHHHHHHHHcCCCCCc---CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh--HHHHHHHH
Q 010168          313 H--DGVTSLLVKEGASLNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL--YLMAKLLL  385 (516)
Q Consensus       313 ~--~~~v~~Ll~~g~~~~~---~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll  385 (516)
                      +  .+++++|+++|++++.   ..+.|||| |+..++.+++++|+++|++++.+|..|+||||+|+..++  .+++++|+
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll  195 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM  195 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence            4  7899999999999984   45779997 777899999999999999999999999999999987654  68999999


Q ss_pred             HcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          386 EAGASVFTKDRWGNTPLDEGRMCG--NKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       386 ~~g~~~~~~~~~g~tpl~~A~~~~--~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      ++|++++.+|..|+||||+|+..|  +.+++++|++ |++.              ..++..+.+|+|.++..++
T Consensus       196 ~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi--------------n~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV--------------NKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC--------------CCCCCCCCCHHHHHHHhCC
Confidence            999999999999999999999986  8899999985 6643              3344556688888776655

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=6.4e-33  Score=271.85  Aligned_cols=190  Identities=34%  Similarity=0.455  Sum_probs=160.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCChHHHHHHHcC
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCG  312 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~A~~~~  312 (516)
                      ....++.|++.|.++.|+.|++. |.+++..|.+|.|+||+||.+++.+++|+|+++|+++|..+ .-+.||||||+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            34567788888888888888888 88888888888888888888888888888888888888877 67888888888888


Q ss_pred             ChHHHHHHHHcCCCCCcCCc--chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          313 HDGVTSLLVKEGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~~~--~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      +..+|.+|+++||+++..|.  -+++|.|+..|+...+-+|+.+|++++.+|.+|+||||+|+.+|+...++.|++.|++
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            88888888888888888764  4788888888888888888888888888888888888888888887778888888888


Q ss_pred             CCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          391 VFTKD-RWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       391 ~~~~~-~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      ++..| ..|+||||+|+..||..++++|++.|++.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~  238 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADL  238 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcc
Confidence            88877 78888888888888888888666666644

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.8e-32  Score=285.46  Aligned_cols=218  Identities=20%  Similarity=0.199  Sum_probs=184.5

Q ss_pred             cccccchhhhHHHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH----------------------------
Q 010168          226 FHIGKHEAELALRVNSAAYHGD--LYQLKGLIRAGADPNKTDYDGRSPLHLA----------------------------  275 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A----------------------------  275 (516)
                      ...+..+..|.||||+|+..|+  .++++.|++.|+++|.+|..|+||||+|                            
T Consensus       203 ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~  282 (764)
T PHA02716        203 VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIP  282 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccch
Confidence            3445667789999999999995  5899999999999999999999999975                            


Q ss_pred             ---------HHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH--cCChHHHHHHHHcCCCCCcCC--cchHHHHHHH-
Q 010168          276 ---------TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK--CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVA-  341 (516)
Q Consensus       276 ---------~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~-  341 (516)
                               +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|++++..+  |.||||+|+. 
T Consensus       283 ~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        283 MILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHh
Confidence                     34578899999999999999999999999999875  457899999999999998865  6799999875 


Q ss_pred             -------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH----HHhChHHHHHHHHHcCC---------------
Q 010168          342 -------------RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA----ASEGLYLMAKLLLEAGA---------------  389 (516)
Q Consensus       342 -------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A----~~~g~~~~v~~Ll~~g~---------------  389 (516)
                                   .++.+++++|+++|++++.++..|+||||.+    ...++.+++++|++.|+               
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~  442 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIR  442 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhc
Confidence                         3689999999999999999999999999942    23467888888887543               


Q ss_pred             ----------------------------------------------CCCCCCCCCCCHHHHHHHcCCHH-----HHHHHH
Q 010168          390 ----------------------------------------------SVFTKDRWGNTPLDEGRMCGNKN-----LIKLLE  418 (516)
Q Consensus       390 ----------------------------------------------~~~~~~~~g~tpl~~A~~~~~~~-----~v~~L~  418 (516)
                                                                    +++..|..|+||||+|+..|+.+     ++++|+
T Consensus       443 ~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL  522 (764)
T PHA02716        443 VDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL  522 (764)
T ss_pred             cCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH
Confidence                                                          23445778999999999999874     459999


Q ss_pred             HcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          419 DAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +.|++..              .+...+.+|+|.|..+++
T Consensus       523 ~~GADIN--------------~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        523 SIQYNIN--------------IPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             hCCCCCc--------------ccCCCCCCHHHHHHHcCC
Confidence            9999654              345567799999888776

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=272.24  Aligned_cols=236  Identities=28%  Similarity=0.292  Sum_probs=197.9

Q ss_pred             hhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 010168          204 LTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDI  283 (516)
Q Consensus       204 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~  283 (516)
                      +..+...++.......+.... ...+..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~-~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~i   83 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKG-NCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI   83 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            344445555544444444332 2234455678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC-----------------------CCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHH
Q 010168          284 TLFLIQKGV-----------------------DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCT  338 (516)
Q Consensus       284 v~~Ll~~g~-----------------------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~  338 (516)
                      +++|+++|+                       +++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+
T Consensus        84 v~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~  163 (434)
T PHA02874         84 IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI  163 (434)
T ss_pred             HHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence            999998765                       466788999999999999999999999999999998754  6799999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 010168          339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  418 (516)
Q Consensus       339 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~  418 (516)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++ +++++|+
T Consensus       164 A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll  242 (434)
T PHA02874        164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI  242 (434)
T ss_pred             HHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999775 5666666


Q ss_pred             HcccCccccccccCccccccCCCcceeecCCCCCCccc
Q 010168          419 DAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV  456 (516)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (516)
                       .|++..              .....+.+|+|.|...+
T Consensus       243 -~~~~in--------------~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        243 -NNASIN--------------DQDIDGSTPLHHAINPP  265 (434)
T ss_pred             -cCCCCC--------------CcCCCCCCHHHHHHhcC
Confidence             355332              23334567777766543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.9e-31  Score=275.23  Aligned_cols=170  Identities=32%  Similarity=0.392  Sum_probs=157.1

Q ss_pred             HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCC
Q 010168          250 QLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN  328 (516)
Q Consensus       250 ~v~~Ll~~g~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~  328 (516)
                      ++++|++.|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            667777789999999988 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC--cchHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 010168          329 VDD--AGSFLCTAVAR-GDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE  404 (516)
Q Consensus       329 ~~~--~~~~l~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~  404 (516)
                      ..+  |.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|+|++..|..|.||||+
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            765  77999999976 789999999999999999886 799999999  578899999999999999999999999999


Q ss_pred             HHHcC-CHHHHHHHHHcc
Q 010168          405 GRMCG-NKNLIKLLEDAE  421 (516)
Q Consensus       405 A~~~~-~~~~v~~L~~~~  421 (516)
                      |+..+ +.+++++|+...
T Consensus       307 A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        307 AVKQYLCINIGRILISNI  324 (477)
T ss_pred             HHHHcCccchHHHHHHHH
Confidence            99754 567888888764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=2.9e-32  Score=267.25  Aligned_cols=184  Identities=32%  Similarity=0.401  Sum_probs=172.9

Q ss_pred             ccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCh
Q 010168          225 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  303 (516)
Q Consensus       225 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  303 (516)
                      ....+..+.+|.|+||+||.+++++++++|+++|+++|..+ .-+.||||+||++|+..+|.+|+++||||+.+|.+|.|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            44456666789999999999999999999999999999988 66899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHH
Q 010168          304 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       304 pL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~  380 (516)
                      |||.|+..|+..+|-+|+.+|++++..|  |+||||+|+.+|+...+..|++.|+.++..| ..|+||||+|+..|+..+
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~  227 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTA  227 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcce
Confidence            9999999999999999999999998866  6799999999999988999999999999988 899999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 010168          381 AKLLLEAGASVFTKDRWGNTPLDEGRMC  408 (516)
Q Consensus       381 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  408 (516)
                      +++|++.|++.+.+|.+|.||+++|...
T Consensus       228 v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  228 VKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             EehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9977888899999999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4.4e-31  Score=273.41  Aligned_cols=190  Identities=19%  Similarity=0.264  Sum_probs=132.7

Q ss_pred             hHHHHHHHHhcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-cCCCCCCChH
Q 010168          235 LALRVNSAAYHG------DLYQLKGLIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI-NIKDKFGNTP  304 (516)
Q Consensus       235 ~~t~L~~A~~~g------~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~-~~~d~~g~tp  304 (516)
                      +.||||.|+..+      +.+++++|+++|+++|.+|..|.||||.|+..   |+.+++++|+++|+|+ +.+|..|.||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            356666555433      34566666666666666666666666655543   4556666666666666 5566666666


Q ss_pred             HHHHHHc--CChHHHHHHHHcCCCCCcC---CcchHHHHHHHcC----CHHHHHHHHHCCCC------------------
Q 010168          305 LLEAIKC--GHDGVTSLLVKEGASLNVD---DAGSFLCTAVARG----DSDFLKRVLSNGVD------------------  357 (516)
Q Consensus       305 L~~A~~~--~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~----~~~~v~~Ll~~g~~------------------  357 (516)
                      ||+|+..  ++.+++++|+++|++++..   .+.||||.|+..+    +.+++++|+++|++                  
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence            6665543  3556666666666665541   2456666555433    55666666665554                  


Q ss_pred             --------------------CCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          358 --------------------PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       358 --------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                                          ++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.++++.|
T Consensus       229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                455667799999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccCc
Q 010168          418 EDAECTQ  424 (516)
Q Consensus       418 ~~~~~~~  424 (516)
                      ++.++..
T Consensus       309 L~~~p~~  315 (494)
T PHA02989        309 LQLKPGK  315 (494)
T ss_pred             HhcCCCh
Confidence            9987644

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.4e-31  Score=284.29  Aligned_cols=188  Identities=23%  Similarity=0.273  Sum_probs=117.3

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      ..++|+.|+..|+.+++++|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~  224 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI  224 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCH
Confidence            34566667777777888888888888887777788888888888888888888888877777777777777777766666


Q ss_pred             HHHHHHHHcCC-----------------------------CCCcC--CcchHHHHHHHcCCH-HHHHHHHHCCCCCCCCC
Q 010168          315 GVTSLLVKEGA-----------------------------SLNVD--DAGSFLCTAVARGDS-DFLKRVLSNGVDPSSRD  362 (516)
Q Consensus       315 ~~v~~Ll~~g~-----------------------------~~~~~--~~~~~l~~A~~~~~~-~~v~~Ll~~g~~~~~~~  362 (516)
                      +++++|++.+.                             +++..  .|.||||+|+..++. +++++|++.|++++.+|
T Consensus       225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d  304 (682)
T PHA02876        225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN  304 (682)
T ss_pred             HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC
Confidence            66655544333                             23322  244566666665554 35555566666666666


Q ss_pred             CCCCcHHHHHHHhC-hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHccc
Q 010168          363 YDHRTPLHVAASEG-LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC-GNKNLIKLLEDAEC  422 (516)
Q Consensus       363 ~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~v~~L~~~~~  422 (516)
                      ..|.||||+|+..| +.+++++|+..|++++..|..|+||||+|+.. ++.+++++|++.|+
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ga  366 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGA  366 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCC
Confidence            56666666666555 35555555555555555555555555555442 23445555555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.2e-31  Score=272.33  Aligned_cols=209  Identities=21%  Similarity=0.167  Sum_probs=178.2

Q ss_pred             hhHHHHHHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          234 ELALRVNSAAYH--GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG------YEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       234 ~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      .|.||||.++..  ++.++|+.|+++|+++|.++ .+.||||.|+.++      +.+++++|+++|+++|.+|..|.|||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            467888765544  37899999999999999886 6799999998754      57899999999999999999999999


Q ss_pred             HHHHHc---CChHHHHHHHHcCCCC-CcC--CcchHHHHHHHc--CCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHhC
Q 010168          306 LEAIKC---GHDGVTSLLVKEGASL-NVD--DAGSFLCTAVAR--GDSDFLKRVLSNGVDPSS-RDYDHRTPLHVAASEG  376 (516)
Q Consensus       306 ~~A~~~---~~~~~v~~Ll~~g~~~-~~~--~~~~~l~~A~~~--~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g  376 (516)
                      |.|+..   |+.+++++|+++|+++ +..  .|.||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+
T Consensus       113 ~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        113 VCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc
Confidence            988765   6789999999999999 554  478999998764  689999999999999998 6889999999998764


Q ss_pred             ----hHHHHHHHHHcCCCCCC--------------------------------------CCCCCCCHHHHHHHcCCHHHH
Q 010168          377 ----LYLMAKLLLEAGASVFT--------------------------------------KDRWGNTPLDEGRMCGNKNLI  414 (516)
Q Consensus       377 ----~~~~v~~Ll~~g~~~~~--------------------------------------~~~~g~tpl~~A~~~~~~~~v  414 (516)
                          +.+++++|+++|++++.                                      +|..|+||||+|+..|+.+++
T Consensus       193 ~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v  272 (494)
T PHA02989        193 IDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAF  272 (494)
T ss_pred             cccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHH
Confidence                89999999999887654                                      445699999999999999999


Q ss_pred             HHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          415 KLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       415 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      ++|+++|++....              ...+.+|+|.|...++
T Consensus       273 ~~LL~~Gadin~~--------------d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        273 NYLLKLGDDIYNV--------------SKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHHHHcCCCcccc--------------CCCCCCHHHHHHHcCC
Confidence            9999999965443              3445688888877766

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=237.82  Aligned_cols=175  Identities=17%  Similarity=0.199  Sum_probs=158.4

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcCCC-CCCChHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKD-KFGNTPLLEA  308 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~A  308 (516)
                      .+.+.||||.|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            45678999999999999999999975   5677889999999999854  8999999999999999997 5899999998


Q ss_pred             HHc---CChHHHHHHHHcCCCCCcCC--cchHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-HHHhChHHH
Q 010168          309 IKC---GHDGVTSLLVKEGASLNVDD--AGSFLCTAVA--RGDSDFLKRVLSNGVDPSSRDYDHRTPLHV-AASEGLYLM  380 (516)
Q Consensus       309 ~~~---~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~  380 (516)
                      +..   ++.+++++|+++|++++..+  |.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            864   47999999999999999865  6799999886  468999999999999999999999999996 566789999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 010168          381 AKLLLEAGASVFTKDRWGNTPLDEGRMCG  409 (516)
Q Consensus       381 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  409 (516)
                      +++|+++|++++.+|..|+||||+|..++
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.8e-31  Score=264.91  Aligned_cols=235  Identities=23%  Similarity=0.298  Sum_probs=195.4

Q ss_pred             cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCcCCCCC
Q 010168          226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-----KGVDINIKDKF  300 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~g~~~~~~d~~  300 (516)
                      .+.+..+..+.||||.||..++.|..+.|++.|+++...|.+|++|+|.|+.+|..++.+..+.     .+..+|.-+..
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~  224 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE  224 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC
Confidence            4455666778889999999999997788889999998888999999999999999999998887     56778888899


Q ss_pred             CChHHHHHHHcCChHHHHHHHHcCCCCCc-----------------CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 010168          301 GNTPLLEAIKCGHDGVTSLLVKEGASLNV-----------------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY  363 (516)
Q Consensus       301 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  363 (516)
                      |.||||.|+..|+.++++.+++.|.....                 .+|.||||+|++.|+.++++.|+..|++++.++.
T Consensus       225 ~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~  304 (929)
T KOG0510|consen  225 KATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNK  304 (929)
T ss_pred             CCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCC
Confidence            99999999999999999999988754322                 3467899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhChHHHHHHHHH-cC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCC
Q 010168          364 DHRTPLHVAASEGLYLMAKLLLE-AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHP  441 (516)
Q Consensus       364 ~g~t~L~~A~~~g~~~~v~~Ll~-~g-~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~  441 (516)
                      ++.||||.||..|+..+|+.|++ .| ...|..|-.|+||||+|+.+||..++++|+++||......           ..
T Consensus       305 d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~-----------e~  373 (929)
T KOG0510|consen  305 DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMS-----------EA  373 (929)
T ss_pred             CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccc-----------cc
Confidence            99999999999999999999998 55 5578888889999999999999999999999998655311           11


Q ss_pred             cceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhhh
Q 010168          442 RKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDK  480 (516)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  480 (516)
                      ...+.+++|-|+..|+         +..++-|++.|++-
T Consensus       374 D~dg~TaLH~Aa~~g~---------~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  374 DSDGNTALHLAAKYGN---------TSAVQKLISHGADI  403 (929)
T ss_pred             ccCCchhhhHHHHhcc---------HHHHHHHHHcCCce
Confidence            4556788999888888         77778887766543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1e-30  Score=281.46  Aligned_cols=201  Identities=24%  Similarity=0.298  Sum_probs=184.0

Q ss_pred             ccccchhhhHHHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCCCChH
Q 010168          227 HIGKHEAELALRVNSAAYHGDL-YQLKGLIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTP  304 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~tp  304 (516)
                      ..+..+..|.||||+|+..|+. ++++.|++.|++++.+|.+|+||||+|+..| +.++++.|+..|++++..|..|.||
T Consensus       265 ~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~Tp  344 (682)
T PHA02876        265 SVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITP  344 (682)
T ss_pred             CCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcH
Confidence            3455566789999999999997 5899999999999999999999999999999 5999999999999999999999999


Q ss_pred             HHHHHHc-CChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh-HHH
Q 010168          305 LLEAIKC-GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLM  380 (516)
Q Consensus       305 L~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~  380 (516)
                      ||+|+.. ++.+++++|++.|++++..+  |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..+
T Consensus       345 Lh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHH
Confidence            9999986 46889999999999999865  6799999999999999999999999999999999999999998765 567


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcccCcccc
Q 010168          381 AKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       381 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~-~~~~v~~L~~~~~~~~~~  427 (516)
                      +++|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++....
T Consensus       425 vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             HHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999876 689999999999976544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1e-30  Score=260.90  Aligned_cols=231  Identities=28%  Similarity=0.320  Sum_probs=202.3

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      .-.+..+.+|+|.|+..|+.++++.|++.|+|+|..|..|.||||.||..++.|..+.|++.|+++...|.+|++|+|.|
T Consensus       115 ~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~a  194 (929)
T KOG0510|consen  115 PLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEA  194 (929)
T ss_pred             ChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHH
Confidence            33455678899999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHcCChHHHHHHHH-----cCCCCCc--CCcchHHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCC
Q 010168          309 IKCGHDGVTSLLVK-----EGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVD---------------PSSRDYDHR  366 (516)
Q Consensus       309 ~~~~~~~~v~~Ll~-----~g~~~~~--~~~~~~l~~A~~~~~~~~v~~Ll~~g~~---------------~~~~~~~g~  366 (516)
                      ++.|..++.+..+.     ++..+|.  ..+.+|||.|+..|+.++++.++++|+.               +|..|.+|+
T Consensus       195 a~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~  274 (929)
T KOG0510|consen  195 ARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGC  274 (929)
T ss_pred             HHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCC
Confidence            99999999999998     5556665  4467999999999999999999998743               456788999


Q ss_pred             cHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cccCccccccccCccccccCCCccee
Q 010168          367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHPRKCT  445 (516)
Q Consensus       367 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (516)
                      ||||+||+.|+.+++..|+..|++++.++.++.||||.|+..|+.++|+-|++ .+..             ..+...-.+
T Consensus       275 tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r-------------llne~D~~g  341 (929)
T KOG0510|consen  275 TPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR-------------LLNESDLHG  341 (929)
T ss_pred             chHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc-------------ccccccccC
Confidence            99999999999999999999999999999999999999999999999999998 3332             333444567


Q ss_pred             ecCCCCCCcccccccceEEEcCCcHHHHHHHHhhhc
Q 010168          446 VFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKL  481 (516)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  481 (516)
                      .+|+|.++..||         -..++-|++.|+...
T Consensus       342 ~tpLHlaa~~gH---------~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  342 MTPLHLAAKSGH---------DRVVQLLLNKGALFL  368 (929)
T ss_pred             CCchhhhhhcCH---------HHHHHHHHhcChhhh
Confidence            799999999999         566777777777665

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-31  Score=250.87  Aligned_cols=191  Identities=26%  Similarity=0.393  Sum_probs=175.2

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCC--------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCh
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRA-GADPNKT--------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  303 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--------~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  303 (516)
                      ..|.|||..||++|+.++|++|+++ ++++...        ...|-+||..|+..||+++||.|+++|+++|.......|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            3467999999999999999999984 6766432        356889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 010168          304 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  381 (516)
Q Consensus       304 pL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  381 (516)
                      ||..||.-|+.++|++|+++|+|++..+  |.|-||+||.+|+.+++++|++.|+|+|.++..|+|+||.|+..|+.+++
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH
Confidence            9999999999999999999999999876  66899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       382 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      ++|+++|+.+. .|..|.|||..|+..|+.++|++|++...+.
T Consensus       200 q~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~~~sr  241 (615)
T KOG0508|consen  200 QLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQCETSR  241 (615)
T ss_pred             HHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcCCcch
Confidence            99999998874 4677999999999999999999999755433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=251.91  Aligned_cols=184  Identities=19%  Similarity=0.053  Sum_probs=170.2

Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          241 SAAYHGDLYQLKGLIRAGADPN------KTDYDGRSPLHLATS--RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       241 ~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      .|+..+..++++.|+++|++++      .++..++|+||+|+.  .|+.++|++|+++|||++..  ++.||||.|+..|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            7999999999999999999998      788899999999999  99999999999999999985  4589999999999


Q ss_pred             ChHHHHHHHHcCCCCCcC--------CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          313 HDGVTSLLVKEGASLNVD--------DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~--------~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      +.+++++|+++|++....        .+.+++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999854322        145789999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcC--------CHHHHHHHHHcccCccc
Q 010168          385 LEAGASVFTKDRWGNTPLDEGRMCG--------NKNLIKLLEDAECTQLS  426 (516)
Q Consensus       385 l~~g~~~~~~~~~g~tpl~~A~~~~--------~~~~v~~L~~~~~~~~~  426 (516)
                      +++|++++.+|..|+||||+|+..|        |.+++++|+++|++...
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999998        46999999999986643

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=267.41  Aligned_cols=209  Identities=21%  Similarity=0.183  Sum_probs=178.6

Q ss_pred             hHHHHH--HHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          235 LALRVN--SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       235 ~~t~L~--~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                      +.|+++  .+...++.+++++|+++|+++|..|..|.||||.|+.+     ++.+++++|+++|+|+|.+|..|.||||+
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC  115 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence            334444  33445689999999999999999999999999999865     67899999999999999999999999999


Q ss_pred             HHHcC---ChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHh---
Q 010168          308 AIKCG---HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD---SDFLKRVLSNGVDPSSRD-YDHRTPLHVAASE---  375 (516)
Q Consensus       308 A~~~~---~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~---  375 (516)
                      |+..+   +.+++++|+++|++++..+  |.||||+|+..++   .+++++|+++|++++..+ ..|.||||.++..   
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~  195 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNID  195 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccc
Confidence            99986   6899999999999999865  6799999999998   999999999999999885 5789999998765   


Q ss_pred             -ChHHHHHHHHHcCCCC---------------------------------------CCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          376 -GLYLMAKLLLEAGASV---------------------------------------FTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       376 -g~~~~v~~Ll~~g~~~---------------------------------------~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                       ++.+++++|+++|+++                                       |.+|..|+||||+|+..|+.++++
T Consensus       196 ~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~  275 (489)
T PHA02798        196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFE  275 (489)
T ss_pred             cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence             3788999998887644                                       456778999999999999999999


Q ss_pred             HHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          416 LLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       416 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +|++.|++....              ...+.+|+|.|...++
T Consensus       276 ~LL~~GAdin~~--------------d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        276 YLLQLGGDINII--------------TELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHcCCccccc--------------CCCCCcHHHHHHHcCc
Confidence            999999975443              3345577777766555

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.1e-30  Score=247.69  Aligned_cols=201  Identities=26%  Similarity=0.409  Sum_probs=180.2

Q ss_pred             CeeecccCCCC--CchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCHHHHH----
Q 010168            1 MEFAFFRGLPE--NLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY----   74 (516)
Q Consensus         1 ~~~~f~~~~~~--~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~~~~~----   74 (516)
                      |.|+|....++  .|.++|.|+|++|++||++||+|+|+ ...+++|.|||.|++||+|+||++|++||+|||.+.    
T Consensus       237 yNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFV-GPgGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~  315 (971)
T KOG0501|consen  237 YNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFV-GPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFER  315 (971)
T ss_pred             eeeeecccccCceeEEEecchhhhhhhhhhhhhcceeee-cCCCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhc
Confidence            56889887644  49999999999999999999999999 666678999999999999999999999999999887    


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       316 ~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~k  395 (971)
T KOG0501|consen  316 DDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWK  395 (971)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       396 La~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI  475 (971)
T KOG0501|consen  396 LANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTI  475 (971)
T ss_pred             HHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------HHHHHhcHHHhhcccC
Q 010168           75 ----------------------------------------------------------------KISQTLYMPYIEKVSL   90 (516)
Q Consensus        75 ----------------------------------------------------------------~i~~~~~~~~l~~~~~   90 (516)
                                                                                      +|+.|+.....+.+|-
T Consensus       476 ~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpa  555 (971)
T KOG0501|consen  476 IQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPA  555 (971)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcc
Confidence                                                                            8899999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccC--CC
Q 010168           91 FKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN--IP  168 (516)
Q Consensus        91 f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~--~~  168 (516)
                      |+-.++..+..++..++..+..||+.|++.|+..+.+.||++|..++.+     ...+++.+++||.||+.-.-..  ..
T Consensus       556 FRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ-----DDEVVAILGKGDVFGD~FWK~~t~~q  630 (971)
T KOG0501|consen  556 FRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ-----DDEVVAILGKGDVFGDEFWKENTLGQ  630 (971)
T ss_pred             eeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee-----cCcEEEEeecCccchhHHhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999997     3358999999999998655332  23


Q ss_pred             cceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          169 QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       169 ~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      ..++++|++.|.+..|.++.+.+++.-+..+...+-+++
T Consensus       631 s~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl  669 (971)
T KOG0501|consen  631 SAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL  669 (971)
T ss_pred             hhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence            458899999999999999999999998887766655554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=258.51  Aligned_cols=193  Identities=19%  Similarity=0.141  Sum_probs=165.7

Q ss_pred             ccchhhhHHHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcCCCCCC
Q 010168          229 GKHEAELALRVNSAAYH---GDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKFG  301 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g  301 (516)
                      ...+..|.||||+||..   |+.+++++|+++|++++..+..|+||||+|+..|+.+    +++.|++++..++..+.  
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--  103 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--  103 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--
Confidence            45567789999997655   8899999999999999999999999999999999954    56788887544555443  


Q ss_pred             ChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC---------
Q 010168          302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV--ARGDSDFLKRVLSNGVDPSSRDY---DH---------  365 (516)
Q Consensus       302 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~--~~~~~~~v~~Ll~~g~~~~~~~~---~g---------  365 (516)
                      .+++|+|+..|+.++|++|+++|++++.++  |.||||.|+  ..|+.+++++|+++|++++..|.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            378888999999999999999999999854  779999654  57899999999999999986653   33         


Q ss_pred             --CcHHHHHHH-----------hChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcccCc
Q 010168          366 --RTPLHVAAS-----------EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAECTQ  424 (516)
Q Consensus       366 --~t~L~~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~--~~v~~L~~~~~~~  424 (516)
                        .||||+|+.           .++.++|++|+++|+++|.+|.+|+||||+|+.+|+.  ++|++|++ |++.
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence              599999986           4689999999999999999999999999999999985  79999986 7654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-29  Score=238.18  Aligned_cols=214  Identities=26%  Similarity=0.288  Sum_probs=181.9

Q ss_pred             HHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCC--------CCCCChHHH
Q 010168          241 SAAYHGDLYQLKGLIRAGAD-----PNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK--------DKFGNTPLL  306 (516)
Q Consensus       241 ~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~--------d~~g~tpL~  306 (516)
                      .|++.|++..+..|+....+     +-..+.+|.|||.+||++||.++|++|++ .++++...        ...|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            68888888888877754332     11234678899999999999999999999 57776543        357899999


Q ss_pred             HHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          307 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       307 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      .|+..||.++|+.|+++|+++|...  +.|||-.||--|+.+++++|+++|+|++..|..|.|.||+||.+|+.+++++|
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            9999999999999999999999754  55999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEE
Q 010168          385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVL  464 (516)
Q Consensus       385 l~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (516)
                      ++.|+|+|.++..|+|+||.++..|+.+++++|+.+|+...               ...-+.+|+-.|...|+......+
T Consensus       170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---------------~d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---------------VDGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---------------ecCCCCchHHHHhhhcchHHHHHH
Confidence            99999999999999999999999999999999999997432               223367899999888884333333


Q ss_pred             EcCCc
Q 010168          465 WVPHN  469 (516)
Q Consensus       465 ~~p~~  469 (516)
                      .-+.+
T Consensus       235 ~~~~~  239 (615)
T KOG0508|consen  235 LQCET  239 (615)
T ss_pred             hcCCc
Confidence            33444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.7e-28  Score=246.27  Aligned_cols=190  Identities=14%  Similarity=0.133  Sum_probs=164.7

Q ss_pred             cchhhhHHHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCC--CCcCCCCCCC
Q 010168          230 KHEAELALRVNSAAYHG---DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGV--DINIKDKFGN  302 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~--~~~~~d~~g~  302 (516)
                      ..+..|.||||+|+..|   +.++|++|+++||+++.+|..|+||||+|+..+  +.++|++|+++|+  +++..+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            55567999999999997   599999999999999999999999999999966  7999999999965  4577888899


Q ss_pred             hHHHHHHH--cCChHHHHHHHH-cCCCCCcC-------CcchHHHHHHHcCCHHHHHHHHHCCCCCC-------CCCCCC
Q 010168          303 TPLLEAIK--CGHDGVTSLLVK-EGASLNVD-------DAGSFLCTAVARGDSDFLKRVLSNGVDPS-------SRDYDH  365 (516)
Q Consensus       303 tpL~~A~~--~~~~~~v~~Ll~-~g~~~~~~-------~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~~g  365 (516)
                      +|||.++.  .++.+++++|++ .+++++..       .+-+|++++...++.++|++|+++|++++       ..+..+
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            99999999  888999999996 67787655       34689999999999999999999999995       234455


Q ss_pred             Cc-HHHHH------HHhChHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH
Q 010168          366 RT-PLHVA------ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE--GRMCGNKNLIKLLED  419 (516)
Q Consensus       366 ~t-~L~~A------~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~--A~~~~~~~~v~~L~~  419 (516)
                      ++ .||++      ...++.+++++|+++|+++|.+|..|.||||+  |...|+.|++++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            54 45533      45678999999999999999999999999995  556678999999999

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.7e-28  Score=208.88  Aligned_cols=222  Identities=24%  Similarity=0.273  Sum_probs=191.5

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+.............+.......-+.+...+ .+.+|+.+++.|+-+|+...+..++..|+..|..+..+++|+.+++..
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~-t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq  139 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDE-TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ  139 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCC-CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH
Confidence            3444444444444444444444444444433 344599999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCC
Q 010168          279 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGV  356 (516)
Q Consensus       279 g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~  356 (516)
                      .+++++..+.+.  .+|..|+.|.|||.||+..|+.++|++|++.|++++.-.  ..++|.+|+..|..++|++|++++.
T Consensus       140 l~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~v  217 (296)
T KOG0502|consen  140 LHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREV  217 (296)
T ss_pred             HHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC
Confidence            999988777665  688999999999999999999999999999999999744  5689999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       357 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      ++|.-|++|.|||-+|++.|+.+||+.|+..|++++..+..|++++..|+..|+. +|+..++.-+.+
T Consensus       218 dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk  284 (296)
T KOG0502|consen  218 DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK  284 (296)
T ss_pred             CcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 888877766543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.3e-27  Score=251.15  Aligned_cols=196  Identities=20%  Similarity=0.232  Sum_probs=167.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh----HHHHHH
Q 010168          248 LYQLKGLIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD----GVTSLL  320 (516)
Q Consensus       248 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~----~~v~~L  320 (516)
                      ++.|+.|+..|..++.+|.+|+||||+||..   |+.++|++|+++|++++..+..|.||||+|+..|+.    ++++.|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5678999999999999999999999998665   889999999999999999999999999999999995    466788


Q ss_pred             HHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HhChHHHHHHHHHcCCCCCCCCC--
Q 010168          321 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA--SEGLYLMAKLLLEAGASVFTKDR--  396 (516)
Q Consensus       321 l~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~--  396 (516)
                      ++.+...+..+...++++|+..|+.+++++|+++|++++.+|..|+||||.|+  ..|+.+++++|+++|++++.+|.  
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            88765556666667888999999999999999999999999999999999654  57899999999999999987653  


Q ss_pred             -CC-----------CCHHHHHHH-----------cCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCC
Q 010168          397 -WG-----------NTPLDEGRM-----------CGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD  453 (516)
Q Consensus       397 -~g-----------~tpl~~A~~-----------~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (516)
                       .|           .||||+|+.           .++.+++++|+++|++....              ...+.+|+|.+.
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~--------------d~~G~TpLh~A~  237 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI--------------DKNYCTALQYYI  237 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC--------------CCCCCcHHHHHH
Confidence             34           599999986           46899999999999965433              344557777777


Q ss_pred             cccc
Q 010168          454 EKVH  457 (516)
Q Consensus       454 ~~~~  457 (516)
                      ..++
T Consensus       238 ~~g~  241 (661)
T PHA02917        238 KSSH  241 (661)
T ss_pred             HcCC
Confidence            7666

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=216.92  Aligned_cols=157  Identities=20%  Similarity=0.232  Sum_probs=142.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC--ChHHHHHHHHcCCCCCcC---CcchHHHHHH
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVD---DAGSFLCTAV  340 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~  340 (516)
                      ..++||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++..   .+.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            5689999999999999999999986   5678899999999999865  899999999999999975   3679999987


Q ss_pred             Hc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--hChHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHHHH
Q 010168          341 AR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPLDE-GRMCGNKNLI  414 (516)
Q Consensus       341 ~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~-A~~~~~~~~v  414 (516)
                      ..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence            64   47999999999999999999999999999986  468999999999999999999999999995 5678899999


Q ss_pred             HHHHHcccCcc
Q 010168          415 KLLEDAECTQL  425 (516)
Q Consensus       415 ~~L~~~~~~~~  425 (516)
                      ++|+++|++..
T Consensus       176 ~~Ll~~Gadi~  186 (209)
T PHA02859        176 DFLTSLGIDIN  186 (209)
T ss_pred             HHHHHcCCCCC
Confidence            99999999654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=1.2e-28  Score=261.38  Aligned_cols=228  Identities=29%  Similarity=0.349  Sum_probs=140.0

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS  277 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  277 (516)
                      ..+...++........+....+....  ..-...+..+.||+|.|+..|+.+.+++++.+|++++..+..|.||||.|+.
T Consensus       339 ~~g~t~lHlaa~~~~~~~~~~l~~~~--~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~  416 (1143)
T KOG4177|consen  339 TAGYTPLHLAAKEGQVEVAGALLEHG--AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAH  416 (1143)
T ss_pred             cCCcccccHhhhhhhHHHHHHhhccc--cccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhh
Confidence            34445555555544443222222111  1222334455666666666666666666666666666555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC-ChHHHHHHHHcCCCCCc---------------------------
Q 010168          278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG-HDGVTSLLVKEGASLNV---------------------------  329 (516)
Q Consensus       278 ~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~g~~~~~---------------------------  329 (516)
                      .++..+|+.++++|++++..+..|.||+|.|+..| ..+++..+++.|++++.                           
T Consensus       417 ~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~  496 (1143)
T KOG4177|consen  417 YGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG  496 (1143)
T ss_pred             ccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhc
Confidence            55555555555555555444444444444444444 44444444444444443                           


Q ss_pred             --------CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCH
Q 010168          330 --------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP  401 (516)
Q Consensus       330 --------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tp  401 (516)
                              ..+-+++|.|...+...+++.++++|++++.++..|.||||.|+..|+..+|++|+++|+|++.+++.|+||
T Consensus       497 ~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP  576 (1143)
T KOG4177|consen  497 GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP  576 (1143)
T ss_pred             CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence                    122344555555555556666666667777778888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          402 LDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       402 l~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                      ||.|+..|+.+|+.+|+++|+++...
T Consensus       577 LH~Aa~~G~~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  577 LHQAAQQGHNDIAELLLKHGASVNAA  602 (1143)
T ss_pred             hhHHHHcChHHHHHHHHHcCCCCCcc
Confidence            88888888888888888888866543

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-27  Score=225.62  Aligned_cols=196  Identities=27%  Similarity=0.448  Sum_probs=179.4

Q ss_pred             ecccCCCC---CchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhh-hhHHHhhccCCHHHHH-----
Q 010168            4 AFFRGLPE---NLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVIY-----   74 (516)
Q Consensus         4 ~f~~~~~~---~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~-~f~~d~~~~~P~~~~~-----   74 (516)
                      +|.+-.+.   .|+.+|+++|++|++||+++++|+|+++|..  |.|-++...+|.+| .|.+|++|.+|+|++.     
T Consensus        19 ~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGll--V~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~   96 (536)
T KOG0500|consen   19 AFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLL--VKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGS   96 (536)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCee--ehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCc
Confidence            45544333   4999999999999999999999999999888  99999999999999 6999999999999886     


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus        97 ~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~  176 (536)
T KOG0500|consen   97 ASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCD  176 (536)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010168           75 --------------------------------------------------------------------------------   74 (516)
Q Consensus        75 --------------------------------------------------------------------------------   74 (516)
                                                                                                      
T Consensus       177 ~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM  256 (536)
T KOG0500|consen  177 AGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYM  256 (536)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeC
Q 010168           75 ------------------------------------------KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFL  112 (516)
Q Consensus        75 ------------------------------------------~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~  112 (516)
                                                                +|+.+.+.+.|+++++|+.+.+.++.+++..++++.|.
T Consensus       257 ~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfS  336 (536)
T KOG0500|consen  257 RYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFS  336 (536)
T ss_pred             HHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccc------cCCCcceEEEEeeeeeEEEeec
Q 010168          113 PGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL------CNIPQPYTVCICELSRLLRIDK  186 (516)
Q Consensus       113 ~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll------~~~~~~~tv~a~~~~~l~~l~~  186 (516)
                      |||+|++.||.+.+||+|.+|.+.+.  +.||. .....+.+|++|||++++      .+.+|++++++...++++++++
T Consensus       337 PgDyICrKGdvgkEMyIVk~G~L~Vv--~dDg~-t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLsk  413 (536)
T KOG0500|consen  337 PGDYICRKGDVGKEMYIVKEGKLAVV--ADDGV-TVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSK  413 (536)
T ss_pred             CCCeEEecCcccceEEEEEccEEEEE--ecCCc-EEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeH
Confidence            99999999999999999999999987  45665 457889999999999985      4678999999999999999999


Q ss_pred             cchhhHHHhhhccchhhh
Q 010168          187 QSFTNILEIYFCDGRKVL  204 (516)
Q Consensus       187 ~~~~~ll~~~~~~~~~~l  204 (516)
                      +++.+.++++|+....+.
T Consensus       414 dDl~~aL~eYP~a~~~L~  431 (536)
T KOG0500|consen  414 DDLWEALSEYPDARKRLE  431 (536)
T ss_pred             HHHHHHHHhCCHHHHHHH
Confidence            999999999998777665

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.9e-26  Score=231.27  Aligned_cols=225  Identities=16%  Similarity=0.082  Sum_probs=176.9

Q ss_pred             hhhhhhhhhccch-hhhhhhhccccccccccchhhhHHHHHHHHh-cCCHHHHHHHHHcCCCCC----------------
Q 010168          201 RKVLTNLLEGKES-NLRLKQLKSDITFHIGKHEAELALRVNSAAY-HGDLYQLKGLIRAGADPN----------------  262 (516)
Q Consensus       201 ~~~l~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~----------------  262 (516)
                      ..+++.+...... .+...++....  +.+..+..+.+|+|+|+. .|+.+++++|+++|+++.                
T Consensus        72 ~~~~~~~~s~n~~lElvk~LI~~GA--dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~  149 (631)
T PHA02792         72 FDIFEYLCSDNIDIELLKLLISKGL--EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITR  149 (631)
T ss_pred             ccHHHHHHHhcccHHHHHHHHHcCC--CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccc
Confidence            3455555543333 33333343333  334445568899999976 699999999999998732                


Q ss_pred             --------------------CCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC--C
Q 010168          263 --------------------KTDYDGRSPLHLATSRG-------YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--H  313 (516)
Q Consensus       263 --------------------~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~--~  313 (516)
                                          ..|..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+...  +
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        150 AEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIK  229 (631)
T ss_pred             ccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccch
Confidence                                34456999999999999       899999999999999999999999999999988  6


Q ss_pred             hHHHHHHHHc----------------------------------------------------------------------
Q 010168          314 DGVTSLLVKE----------------------------------------------------------------------  323 (516)
Q Consensus       314 ~~~v~~Ll~~----------------------------------------------------------------------  323 (516)
                      .+++++|++.                                                                      
T Consensus       230 ~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~  309 (631)
T PHA02792        230 REIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDL  309 (631)
T ss_pred             HHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHH
Confidence            7777777652                                                                      


Q ss_pred             ---------------------CCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CcHHHHHHHhChH--
Q 010168          324 ---------------------GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH--RTPLHVAASEGLY--  378 (516)
Q Consensus       324 ---------------------g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~--  378 (516)
                                           |++.........++.|+..|+.+++++|+++|++++.+|..|  .||||.|+..+..  
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v  389 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDV  389 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhH
Confidence                                 111110011235788899999999999999999999998775  6999998776654  


Q ss_pred             -HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          379 -LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       379 -~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                       +++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++....
T Consensus       390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence             4689999999999999999999999999999999999999999975543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=224.36  Aligned_cols=197  Identities=13%  Similarity=0.037  Sum_probs=173.2

Q ss_pred             HHhcCCHHH-HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc------CCCCCCChHHHHHHH--cC
Q 010168          242 AAYHGDLYQ-LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN------IKDKFGNTPLLEAIK--CG  312 (516)
Q Consensus       242 A~~~g~~~~-v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~tpL~~A~~--~~  312 (516)
                      -..+...++ -++++.+|+++|..+.+|     +|+..+..+++++|+.+|++++      .++..++|+||.|+.  .|
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n  129 (437)
T PHA02795         55 EPICDPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYV  129 (437)
T ss_pred             hccCCHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCC
Confidence            334445554 468899999999988888     9999999999999999999999      788999999999999  89


Q ss_pred             ChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCcHHHHHHHhChHHHHHHHHH
Q 010168          313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD------YDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      +.++|++|+++||+++..++.||+|.|+..++.+++++|+++|++.....      ..|.||+|.|+..++.+++++|++
T Consensus       130 ~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs  209 (437)
T PHA02795        130 EIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP  209 (437)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh
Confidence            99999999999999999888999999999999999999999998543222      347899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       387 ~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +|+++|.+|..|.||||+|+..|+.+++++|+++|++...              ....+.+|+|.|...++
T Consensus       210 ~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~--------------~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        210 YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA--------------VMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999996543              23445688888877664

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=2e-26  Score=244.61  Aligned_cols=192  Identities=34%  Similarity=0.417  Sum_probs=150.7

Q ss_pred             hhhHHHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHc
Q 010168          233 AELALRVNSAAYHG-DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  311 (516)
Q Consensus       233 ~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~  311 (516)
                      ..|.|++|.|+..| ..+....+++.|+++|.....|.||||.|+..|+.++++.|++.++..+.....|.|++|.|...
T Consensus       438 ~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  438 KLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             hcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence            34455666666665 55555555555666666555666666666666666666666666555555555666666666666


Q ss_pred             CChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCC
Q 010168          312 GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  389 (516)
Q Consensus       312 ~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  389 (516)
                      ++..+++.++++|++++...  +.||||.|+..|+.++|++|+++|++++.++..|+||||.||..|+.+++++|+++|+
T Consensus       518 ~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  518 DTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA  597 (1143)
T ss_pred             hhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCC
Confidence            66666666666777777655  4599999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          390 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       390 ~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      ++|..|.+|.|||++|+..|+.+++++|...++..
T Consensus       598 ~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  598 SVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            99999999999999999999999999999999883

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.2e-25  Score=228.31  Aligned_cols=198  Identities=20%  Similarity=0.142  Sum_probs=168.0

Q ss_pred             cccccchhhhHHHHHH--HHhcCCHHHHHHHHH--------------------------------cCCCCCC--------
Q 010168          226 FHIGKHEAELALRVNS--AAYHGDLYQLKGLIR--------------------------------AGADPNK--------  263 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~g~~~~~--------  263 (516)
                      .+++..+..|.||||+  |+..|+.++++.|++                                .|+|...        
T Consensus       226 adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  305 (672)
T PHA02730        226 VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGR  305 (672)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhcc
Confidence            3456777889999994  666788999999999                                6888755        


Q ss_pred             ------------CCCCCCc---------------------HHHHHHHcC---CHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          264 ------------TDYDGRS---------------------PLHLATSRG---YEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       264 ------------~~~~g~t---------------------~Lh~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                                  .+..|.+                     .||.=...+   +.+++++|+++||++|.. ..|.||||+
T Consensus       306 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~  384 (672)
T PHA02730        306 HTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHD  384 (672)
T ss_pred             CcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHH
Confidence                        5556654                     677777755   689999999999999985 799999999


Q ss_pred             HHHcCC----hHHHHHHHHcCC--CCCcCC--cchHHHH---HHHcC---------CHHHHHHHHHCCCCCCCCCCCCCc
Q 010168          308 AIKCGH----DGVTSLLVKEGA--SLNVDD--AGSFLCT---AVARG---------DSDFLKRVLSNGVDPSSRDYDHRT  367 (516)
Q Consensus       308 A~~~~~----~~~v~~Ll~~g~--~~~~~~--~~~~l~~---A~~~~---------~~~~v~~Ll~~g~~~~~~~~~g~t  367 (516)
                      |+..++    .+++++|+++|+  +++.++  +.||||.   |...+         ..+++++|+.+|++++.+|..|.|
T Consensus       385 Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~T  464 (672)
T PHA02730        385 YFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKT  464 (672)
T ss_pred             HHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCC
Confidence            998875    899999999998  466544  6799984   33232         235799999999999999999999


Q ss_pred             HHHHHHHhChHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHH--cCCHHHHHHHHHcccCc
Q 010168          368 PLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRM--CGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       368 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~--~~~~~~v~~L~~~~~~~  424 (516)
                      |||+|+..++.+++++|+++|++++.++. .|.||||+|+.  .++.+++++|+++|++.
T Consensus       465 PLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        465 LLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999999999999999999999999997 59999999997  47999999999999865

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.9e-25  Score=241.08  Aligned_cols=227  Identities=19%  Similarity=0.137  Sum_probs=184.5

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRA--GADPNKTDYDGRSPLH-LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      ..+..+++.||..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            4668899999999999999999998  8999999999999999 8889999999999999987    6788999999998


Q ss_pred             HcC---ChHHHHHHHHcCCC------CC------cCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC------------
Q 010168          310 KCG---HDGVTSLLVKEGAS------LN------VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD------------  362 (516)
Q Consensus       310 ~~~---~~~~v~~Ll~~g~~------~~------~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~------------  362 (516)
                      ..+   ...++..+.+.+.+      ++      ...|.||||+|+.+|+.+++++|+++|++++.++            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            732   23345555554432      11      1347899999999999999999999999998653            


Q ss_pred             --CCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHHHcccCcccccccc
Q 010168          363 --YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---------NKNLIKLLEDAECTQLSEFHYC  431 (516)
Q Consensus       363 --~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~---------~~~~v~~L~~~~~~~~~~~~~~  431 (516)
                        ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.++.......  
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e--  248 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE--  248 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh--
Confidence              35899999999999999999999999999999999999999999987         34577788877764322100  


Q ss_pred             CccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhh
Q 010168          432 SQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  479 (516)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  479 (516)
                           .....+..+.+|+|.|+..++         ++.++.+++...+
T Consensus       249 -----l~~i~N~~g~TPL~~A~~~g~---------~~l~~lLL~~~~~  282 (743)
T TIGR00870       249 -----LEVILNHQGLTPLKLAAKEGR---------IVLFRLKLAIKYK  282 (743)
T ss_pred             -----hhhhcCCCCCCchhhhhhcCC---------ccHHHHHHHHHHh
Confidence                 112345667799999999888         6677777776544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.2e-24  Score=218.60  Aligned_cols=197  Identities=14%  Similarity=0.084  Sum_probs=164.9

Q ss_pred             cccccchhhhHHHHHHHHhcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHc------
Q 010168          226 FHIGKHEAELALRVNSAAYHG-------DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQK------  290 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~------  290 (516)
                      ..++-.+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.  +.|++++|++.      
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            334455667899999999999       899999999999999999999999999999988  67788777642      


Q ss_pred             --------------------------------------------------------------------------------
Q 010168          291 --------------------------------------------------------------------------------  290 (516)
Q Consensus       291 --------------------------------------------------------------------------------  290 (516)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             -----CCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCc----chHHHHHHHcCCH---HHHHHHHHCCCCC
Q 010168          291 -----GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA----GSFLCTAVARGDS---DFLKRVLSNGVDP  358 (516)
Q Consensus       291 -----g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~~~l~~A~~~~~~---~~v~~Ll~~g~~~  358 (516)
                           |++.+  ...+..+++.|+..|+.++|++|+++|++++.++.    .+|||.|+..+..   +++++|+++|+++
T Consensus       326 ~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI  403 (631)
T PHA02792        326 CMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI  403 (631)
T ss_pred             HHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence                 11110  11245678999999999999999999999988663    3899988776664   4688899999999


Q ss_pred             CCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--c--------CCHHHHHHHHHcccCc
Q 010168          359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM--C--------GNKNLIKLLEDAECTQ  424 (516)
Q Consensus       359 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~--~--------~~~~~v~~L~~~~~~~  424 (516)
                      |.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+.  .        ...+++++|++++++.
T Consensus       404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999999999999999999999999999999976  2        2256789999998765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=2.5e-24  Score=234.94  Aligned_cols=162  Identities=21%  Similarity=0.206  Sum_probs=151.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHc
Q 010168          265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR  342 (516)
Q Consensus       265 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~  342 (516)
                      +..+.++||.||..|+.++++.|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            4467899999999999999999999999999999999999999999999999999999999999865  77999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       343 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      |+.+++++|++.++..+.  ..|.++||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999999998876543  457799999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccccc
Q 010168          423 TQLSEF  428 (516)
Q Consensus       423 ~~~~~~  428 (516)
                      +.....
T Consensus       680 dv~~~~  685 (823)
T PLN03192        680 DVDKAN  685 (823)
T ss_pred             CCCCCC
Confidence            876554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=7.1e-25  Score=238.09  Aligned_cols=219  Identities=20%  Similarity=0.123  Sum_probs=172.0

Q ss_pred             hhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHH-HHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 010168          201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVN-SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG  279 (516)
Q Consensus       201 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g  279 (516)
                      ...+..+++.++.....+.+......+.+..+..|.|||| .|+..++.++++.|++.|+    .+..|.||||.|+..+
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEY   93 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhcc
Confidence            3444445555554444444544335556677788999999 8888999999999999987    6778999999999732


Q ss_pred             ---CHHHHHHHHHcCCC------Cc----CCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC----------------
Q 010168          280 ---YEDITLFLIQKGVD------IN----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------  330 (516)
Q Consensus       280 ---~~~~v~~Ll~~g~~------~~----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~----------------  330 (516)
                         ...+++.+...+.+      ++    ..+..|.||||+||..|+.++|++|+++|++++..                
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccc
Confidence               23344444444422      11    12357999999999999999999999999999864                


Q ss_pred             CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC---------hHHHHHHHHHcCCCC-------CCC
Q 010168          331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG---------LYLMAKLLLEAGASV-------FTK  394 (516)
Q Consensus       331 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~-------~~~  394 (516)
                      .+.+|||.|+..|+.+++++|+++|++++.+|..|+||||+|+..+         ...+.+++++.++..       +..
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~  253 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL  253 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence            2568999999999999999999999999999999999999999987         234566666655443       667


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          395 DRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       395 ~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                      |.+|.||||+|+..|+.+++++|++.+..
T Consensus       254 N~~g~TPL~~A~~~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       254 NHQGLTPLKLAAKEGRIVLFRLKLAIKYK  282 (743)
T ss_pred             CCCCCCchhhhhhcCCccHHHHHHHHHHh
Confidence            99999999999999999999999996654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=199.20  Aligned_cols=175  Identities=27%  Similarity=0.365  Sum_probs=154.0

Q ss_pred             CHHHHHHHHHc----CCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCChHHHHHHHc-----
Q 010168          247 DLYQLKGLIRA----GAD-----PNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKC-----  311 (516)
Q Consensus       247 ~~~~v~~Ll~~----g~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~~-----  311 (516)
                      +.+.|+..+..    +++     +|..|.+|+|+||||+.+++.++|+.||+.| +++|.+|+-|.||.++|+..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            56666654432    333     5889999999999999999999999999988 89999999999999999864     


Q ss_pred             CChHHHHHHHHcCCCCCcC---CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc-
Q 010168          312 GHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-  387 (516)
Q Consensus       312 ~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-  387 (516)
                      .+.++|..|.+.| ++|.+   .|+|+|++|+.+|+.++|+.|+..|+|+|.+|.+|.|+|+.||.+||.++|++||.. 
T Consensus       318 ~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  318 ADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            3567888888765 56653   478999999999999999999999999999999999999999999999999999985 


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          388 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       388 g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      ++|....|.+|.|+|.+|...||.+|.-+|-.+..
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence            69999999999999999999999999999976554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-24  Score=214.87  Aligned_cols=205  Identities=24%  Similarity=0.243  Sum_probs=179.2

Q ss_pred             cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      ...+..+..+.|+||.||.+|+.+++++|++..+-++..|..|.+|||+|+.+|+.++++.|+.++..+|..+..|.|||
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL  119 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc
Confidence            34455566899999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCcHHHHHHHh
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDP--------SSRDYDHRTPLHVAASE  375 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~  375 (516)
                      |.|+.+||.+++.+|+++|+++-..+  +++++-+|++.|..++++.|++....+        ..++..+.+|||.|+++
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN  199 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence            99999999999999999999987755  468999999999999999999763221        23445678999999999


Q ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccccccc
Q 010168          376 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYC  431 (516)
Q Consensus       376 g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~  431 (516)
                      |+.++++.|++.|.++|.....| |+||.|+.+|..++|++|++.|.....+..++
T Consensus       200 gh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~  254 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHG  254 (854)
T ss_pred             chHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccc
Confidence            99999999999999999988776 89999999999999999999887665544433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.3e-24  Score=207.42  Aligned_cols=190  Identities=34%  Similarity=0.450  Sum_probs=161.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      -.+..|+..|+.+-++.|+..|+++|..+.+|.|+||-||...+.+||++|+++|++||..|..|+||||.|+..||..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcCC--cchH------------HHHHHHc-C-CH------------HHHHHHHHCCCCCCCCCCCCCcH
Q 010168          317 TSLLVKEGASLNVDD--AGSF------------LCTAVAR-G-DS------------DFLKRVLSNGVDPSSRDYDHRTP  368 (516)
Q Consensus       317 v~~Ll~~g~~~~~~~--~~~~------------l~~A~~~-~-~~------------~~v~~Ll~~g~~~~~~~~~g~t~  368 (516)
                      +++|+.+|+++-..+  ++.|            +-.++.. | .+            .=+...+..|...+..+..|.|+
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            999999998765432  1111            1111111 1 11            11333344788888888889999


Q ss_pred             HHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       369 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      ||+|+..|..++.++|+++|.+++.+|.+||||||.|+..|+.+++++|+++|++...
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            9999999999999999999999999999999999999999999999999999987644

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.4e-24  Score=185.08  Aligned_cols=190  Identities=22%  Similarity=0.179  Sum_probs=172.8

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHH
Q 010168          239 VNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  317 (516)
Q Consensus       239 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v  317 (516)
                      +-.|...|+.++...++.-.++ +..++.+|+.++|.|+-.|+...++.++.+|+..|..+..+++|+.+++...+.+.+
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~  145 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVV  145 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHH
Confidence            3457888888888877665444 455677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCC
Q 010168          318 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW  397 (516)
Q Consensus       318 ~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  397 (516)
                      ..|.++-.+-..+.|.|||.||+++|++++|++|++.|++++...+...|+|.+|++.|..++|++|+.++.|+|..|.+
T Consensus       146 ~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN  225 (296)
T KOG0502|consen  146 DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN  225 (296)
T ss_pred             HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC
Confidence            99888776666667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcccCccccc
Q 010168          398 GNTPLDEGRMCGNKNLIKLLEDAECTQLSEF  428 (516)
Q Consensus       398 g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~  428 (516)
                      |.|||-+|++.||.+|++.|++.|++.....
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            9999999999999999999999999776543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.7e-23  Score=182.24  Aligned_cols=142  Identities=19%  Similarity=0.223  Sum_probs=93.2

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH---HHHHHHcCCCCCc
Q 010168          257 AGADPNKTDYDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV---TSLLVKEGASLNV  329 (516)
Q Consensus       257 ~g~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~---v~~Ll~~g~~~~~  329 (516)
                      +|++++..+.++.++||.||+.|+.    +++++|.+.|++++..|..|+||||+|+..|+.+.   +++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4567777777888888888888887    56667777888888888888888888888877543   5666666665554


Q ss_pred             CC---cchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCC
Q 010168          330 DD---AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG  398 (516)
Q Consensus       330 ~~---~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  398 (516)
                      .+   +.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            32   3455555555555555555553 455555555566666666666666666666666666665555544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=207.40  Aligned_cols=207  Identities=24%  Similarity=0.291  Sum_probs=180.2

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+.+.++.+.-+...++...++..+..+.+.+  ..|.+|||+||+.|+.+++++++.++..+|..+..|.||||.||.+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            45556666665565556655566666665555  6789999999999999999999999988999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCc----------CCcchHHHHHHHcCCHHHH
Q 010168          279 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV----------DDAGSFLCTAVARGDSDFL  348 (516)
Q Consensus       279 g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~~l~~A~~~~~~~~v  348 (516)
                      ||.+++.+|+.+|+|+-.+|..+.|+|.+|++.|..++++.|++....+..          -..-+++|+|+++|+.+|+
T Consensus       126 gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~  205 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECM  205 (854)
T ss_pred             cchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHH
Confidence            999999999999999999999999999999999999999999987333221          1133689999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 010168          349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC  408 (516)
Q Consensus       349 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  408 (516)
                      +.|++.|.++|.....| |+||.|+..|..++|++|++.|.+...+|.+|+|+|++-...
T Consensus       206 ~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  206 QALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            99999999999988776 999999999999999999999999999999999999877654

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=178.56  Aligned_cols=136  Identities=17%  Similarity=0.226  Sum_probs=114.7

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcch
Q 010168          261 PNKTDYDGRSPLHLATSRGYEDITLFLIQ------KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS  334 (516)
Q Consensus       261 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  334 (516)
                      ++.++..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+.+++                 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-----------------   76 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-----------------   76 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-----------------
Confidence            35677889999999999999999998854      3688999999999999999998885432                 


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Q 010168          335 FLCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKN  412 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~  412 (516)
                                .+++++|+++|++++.++. .|+||||+|+..++.+++++|++ .|++++..|..|+||||+|+..++.+
T Consensus        77 ----------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         77 ----------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             ----------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence                      2445566666777777774 89999999999999999999997 58999999999999999999999999


Q ss_pred             HHHHHHHcccC
Q 010168          413 LIKLLEDAECT  423 (516)
Q Consensus       413 ~v~~L~~~~~~  423 (516)
                      ++++|++.++.
T Consensus       147 iv~~L~~~~~~  157 (169)
T PHA02741        147 MMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.89  E-value=6.3e-23  Score=198.24  Aligned_cols=128  Identities=27%  Similarity=0.579  Sum_probs=115.9

Q ss_pred             HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecC
Q 010168           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP  154 (516)
Q Consensus        75 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~  154 (516)
                      +++...+...+.++.+|++|+...+..++..++...|-|||+|++.||.+..||+|..|.|.|.. .++|+ .++..+.+
T Consensus       519 dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~~-~Vl~tL~~  596 (815)
T KOG0499|consen  519 DLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDGT-KVLVTLKA  596 (815)
T ss_pred             eeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCCC-EEEEEecc
Confidence            56667788899999999999999999999999999999999999999999999999999999986 56665 68999999


Q ss_pred             CCeeeccccc---cCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhh
Q 010168          155 NSSFGEVSIL---CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL  204 (516)
Q Consensus       155 G~~fGe~~ll---~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l  204 (516)
                      |+.|||++++   .+.+|+++++|...|.++.+++.++.+++..+|....-+.
T Consensus       597 GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLr  649 (815)
T KOG0499|consen  597 GSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILR  649 (815)
T ss_pred             cceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHH
Confidence            9999999986   5578899999999999999999999999999996654433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=8.5e-22  Score=185.83  Aligned_cols=154  Identities=23%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             CCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCC----CCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC---Cc
Q 010168          261 PNKTDYDGRSP-LHLATSRGYEDITLFLIQKGVDINIK----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DA  332 (516)
Q Consensus       261 ~~~~~~~g~t~-Lh~A~~~g~~~~v~~Ll~~g~~~~~~----d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~---~~  332 (516)
                      +..+|..|+|+ ||.|+..|+.+++++|+++|+++|.+    +..|.||||+|+..|+.+++++|+++|++++..   .+
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            34556666664 55566668888888888888888876    357888888888888888888888888888863   36


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Q 010168          333 GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN  412 (516)
Q Consensus       333 ~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~  412 (516)
                      .||||.|+..|+.+++++|+.+|++++.+|..|.||||+|+..++.+++..+.  |.   ..+..+.+|++++   ++.+
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFD  176 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHH
Confidence            78888888888888999999999999999999999999999999888876665  32   2466678888875   4789


Q ss_pred             HHHHHHHccc
Q 010168          413 LIKLLEDAEC  422 (516)
Q Consensus       413 ~v~~L~~~~~  422 (516)
                      ++++|++++.
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999887

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=8.8e-23  Score=196.53  Aligned_cols=179  Identities=31%  Similarity=0.394  Sum_probs=155.1

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      +..+.+|.|+||.||...+.++|++|++.|+++|..|..||||||.|+..||..++++|+++|+++...+.+|..|+..+
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            55667899999999999999999999999999999999999999999999999999999999999888888877776543


Q ss_pred             HHcCChH--------------------------HHHHHHHcCCCCCc--CCcchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 010168          309 IKCGHDG--------------------------VTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSS  360 (516)
Q Consensus       309 ~~~~~~~--------------------------~v~~Ll~~g~~~~~--~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~  360 (516)
                      ...-..+                          =+...+..|...+.  ..|.|+||.|+.+|..++.++|+++|.+++.
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence            3211111                          12233335555443  2377999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 010168          361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM  407 (516)
Q Consensus       361 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~  407 (516)
                      +|.+||||||.|+..|..+++++|+++|++.+.....|.||+.+|..
T Consensus       227 ~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  227 KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            99999999999999999999999999999999999999999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=7.6e-22  Score=173.08  Aligned_cols=140  Identities=15%  Similarity=0.161  Sum_probs=125.7

Q ss_pred             cCCCCcCCCCCCChHHHHHHHcCCh----HHHHHHHHcCCCCCcC--CcchHHHHHHHcCCHH---HHHHHHHCCCCCCC
Q 010168          290 KGVDINIKDKFGNTPLLEAIKCGHD----GVTSLLVKEGASLNVD--DAGSFLCTAVARGDSD---FLKRVLSNGVDPSS  360 (516)
Q Consensus       290 ~g~~~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~---~v~~Ll~~g~~~~~  360 (516)
                      +|++++..+..+.++||.||+.|+.    +++++|.+.|+.++..  .++||||+|+..|+.+   ++++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            5778888899999999999999997    6777888899888764  4789999999998865   48999999999999


Q ss_pred             CC-CCCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccccc
Q 010168          361 RD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH  429 (516)
Q Consensus       361 ~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~  429 (516)
                      ++ ..|.||||+|+..|+.+++++|+. .|++++.++..|+||||+|+..++.+++++|+++|++...+..
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            98 589999999999999999999995 8999999999999999999999999999999999997765543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=3.6e-22  Score=182.75  Aligned_cols=158  Identities=25%  Similarity=0.354  Sum_probs=143.1

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCcCC-CCCC
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAG-ADPNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIK-DKFG  301 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~~~~-d~~g  301 (516)
                      +--+..|+|+||+|+.++|.++|+.||+.| .+++.++..|.||+++|+..     .+.++|..|...| |+|.+ ...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhc
Confidence            445677999999999999999999999998 89999999999999999863     4778999998886 77765 5789


Q ss_pred             ChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHhChH
Q 010168          302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASEGLY  378 (516)
Q Consensus       302 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~  378 (516)
                      +|+|++|+.+|+.++|+.||..|+|+|.++  |.|+|+.||.+|+.|++++|+.. +++....|.+|.|+|.+|...|+-
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            999999999999999999999999999865  77999999999999999999975 689999999999999999999999


Q ss_pred             HHHHHHHHc
Q 010168          379 LMAKLLLEA  387 (516)
Q Consensus       379 ~~v~~Ll~~  387 (516)
                      ++.-+|..+
T Consensus       421 eIa~mlYa~  429 (452)
T KOG0514|consen  421 EIAVMLYAH  429 (452)
T ss_pred             HHHHHHHHH
Confidence            998888654

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-21  Score=171.40  Aligned_cols=130  Identities=25%  Similarity=0.265  Sum_probs=108.9

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCcCCCC
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKGLIR------AGADPNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIKDK  299 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~d~  299 (516)
                      ..+..|.||||+||..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|+++|.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            445678999999999999999999854      368899999999999999999999    5899999999999999985


Q ss_pred             -CCChHHHHHHHcCChHHHHHHHH-cCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 010168          300 -FGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL  377 (516)
Q Consensus       300 -~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  377 (516)
                       .|.||||+|+..++.+++++|++ .|+++                               +..|..|+||||+|+..|+
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-------------------------------~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDL-------------------------------HFCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-------------------------------CcCCCCCCCHHHHHHHCCC
Confidence             89999999999998888888876 35544                               4556677788888887777


Q ss_pred             HHHHHHHHHcCCC
Q 010168          378 YLMAKLLLEAGAS  390 (516)
Q Consensus       378 ~~~v~~Ll~~g~~  390 (516)
                      .+++++|++.++.
T Consensus       145 ~~iv~~L~~~~~~  157 (169)
T PHA02741        145 VAMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=4.2e-21  Score=181.16  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=128.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCChHHHHHH
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTD----YDGRSPLHLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAI  309 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~  309 (516)
                      ..++||.|+..|+.++++.|+++|+++|.++    ..|.||||+|+..|+.+++++|+++|+++|.. +..|.||||+|+
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            3567888888899999999999999999874    58999999999999999999999999999986 568999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          310 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      ..|+.+++++|+++|++++..+  |.||||+|+..++.+++..+.  |.   ..+..+.+|++++   ++.+++++|+++
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~ei~~~Lish  184 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFDILKILVSH  184 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHHHHHHHHHH
Confidence            9999999999999999999764  779999999999988876664  32   2455667888875   478999999998


Q ss_pred             CC
Q 010168          388 GA  389 (516)
Q Consensus       388 g~  389 (516)
                      ++
T Consensus       185 ~v  186 (300)
T PHA02884        185 FI  186 (300)
T ss_pred             HH
Confidence            87

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=3.8e-21  Score=167.18  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--C-----CcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcc
Q 010168          261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGV--D-----INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG  333 (516)
Q Consensus       261 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~--~-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  333 (516)
                      ++..|.+|.||||+||..|+.  +.++...+.  +     ++.+|..|.||||+|+..|+.+.+                
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~----------------   71 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ----------------   71 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH----------------
Confidence            456677788888888888873  333333222  1     234577777777777777665321                


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCH
Q 010168          334 SFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNK  411 (516)
Q Consensus       334 ~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~  411 (516)
                                  +++++|+++|++++.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.
T Consensus        72 ------------e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~  139 (154)
T PHA02736         72 ------------EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA  139 (154)
T ss_pred             ------------HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH
Confidence                        33455666666777776 478888888888888888888887 4888888888888888888888888


Q ss_pred             HHHHHHHHcccCc
Q 010168          412 NLIKLLEDAECTQ  424 (516)
Q Consensus       412 ~~v~~L~~~~~~~  424 (516)
                      +++++|++.|++.
T Consensus       140 ~i~~~Ll~~ga~~  152 (154)
T PHA02736        140 KMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHHHHcCCCC
Confidence            8888888888753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.2e-20  Score=155.12  Aligned_cols=142  Identities=30%  Similarity=0.279  Sum_probs=110.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  315 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~  315 (516)
                      -.+.+|+..+.+..|+.||+..++ +|.+|.+|.||||-|+.+||.++|+.|+.+|++++.+...|+||||.||.-++.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            456789999999999999988776 6999999999999999999999999999999999999999999999998877777


Q ss_pred             HHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChH-HHHHHHHH-cCCCCCC
Q 010168          316 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY-LMAKLLLE-AGASVFT  393 (516)
Q Consensus       316 ~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~-~g~~~~~  393 (516)
                      ++..|+++|+|+|.                               ......||||+||...+. ..+++|+. .+.++..
T Consensus       145 va~~LLqhgaDVnA-------------------------------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~  193 (228)
T KOG0512|consen  145 VAGRLLQHGADVNA-------------------------------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGL  193 (228)
T ss_pred             HHHHHHhccCcccc-------------------------------cccccchhhHHhhcccchHHHHHHHhhccccChhh
Confidence            77777766666554                               444456666666655433 34455443 4566666


Q ss_pred             CCCCCCCHHHHHHHcC
Q 010168          394 KDRWGNTPLDEGRMCG  409 (516)
Q Consensus       394 ~~~~g~tpl~~A~~~~  409 (516)
                      ++..+.||+.+|.+.+
T Consensus       194 ~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  194 KNNLEETAFDIARRTS  209 (228)
T ss_pred             hcCccchHHHHHHHhh
Confidence            6777777777776554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=5.6e-21  Score=166.11  Aligned_cols=131  Identities=23%  Similarity=0.281  Sum_probs=102.6

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcC--CC-----CCCCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCcCCC
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAG--AD-----PNKTDYDGRSPLHLATSRGYE---DITLFLIQKGVDINIKD  298 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~-----~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~g~~~~~~d  298 (516)
                      +..+..|.||||+||..|+..  .++...+  .+     ++.+|.+|+||||+|+..|+.   +++++|+++|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            455677999999999999843  3333222  22     235688999999999999987   46899999999999998


Q ss_pred             -CCCChHHHHHHHcCChHHHHHHHHc-CCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC
Q 010168          299 -KFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG  376 (516)
Q Consensus       299 -~~g~tpL~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  376 (516)
                       ..|.||||+|+..|+.+++++|++. |+                               +++.++..|+||||+|+..|
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~-------------------------------d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGV-------------------------------NMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCC-------------------------------CCccccCCCCCHHHHHHHcC
Confidence             5899999999999888888887763 44                               45566677888888888888


Q ss_pred             hHHHHHHHHHcCCCCC
Q 010168          377 LYLMAKLLLEAGASVF  392 (516)
Q Consensus       377 ~~~~v~~Ll~~g~~~~  392 (516)
                      +.+++++|+++|++.+
T Consensus       138 ~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        138 DAKMMNILRAKGAQCK  153 (154)
T ss_pred             CHHHHHHHHHcCCCCC
Confidence            8888888888877654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=3.6e-20  Score=152.38  Aligned_cols=118  Identities=26%  Similarity=0.275  Sum_probs=99.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHH
Q 010168          271 PLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  349 (516)
Q Consensus       271 ~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~  349 (516)
                      -+.+|+..+....|+.||+..++ +|.+|.+|.||||-|+.+||.++|+.|+..|+                        
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA------------------------  121 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA------------------------  121 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccC------------------------
Confidence            46788888889999988887665 78899999999998888888777777766555                        


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHH
Q 010168          350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK-NLIKLLED  419 (516)
Q Consensus       350 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~-~~v~~L~~  419 (516)
                             +++.+...||||||.||..++.+++.+|+++|+|+|+......||||+|+.+.+. ..+.+|+.
T Consensus       122 -------n~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  122 -------NKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             -------CcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence                   5556778899999999999999999999999999999999999999999988765 55666664

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-19  Score=182.67  Aligned_cols=237  Identities=22%  Similarity=0.269  Sum_probs=186.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcC---------CCCCCCCCCCCcHHHHHHH---cCCHHHHHHHHHcCCC-Cc---C-CCC
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAG---------ADPNKTDYDGRSPLHLATS---RGYEDITLFLIQKGVD-IN---I-KDK  299 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~g~~-~~---~-~d~  299 (516)
                      .++..|...+.++.+..|+..+         .+++.+...|.|.||.|..   .++-++++.|++.-.. +|   . -..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5678888999998888887655         5678888899999999997   4566899999986432 12   1 236


Q ss_pred             CCChHHHHHHHcCChHHHHHHHHcCCCCCcCC-------------------------cchHHHHHHHcCCHHHHHHHHHC
Q 010168          300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-------------------------AGSFLCTAVARGDSDFLKRVLSN  354 (516)
Q Consensus       300 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~-------------------------~~~~l~~A~~~~~~~~v~~Ll~~  354 (516)
                      .|.||||+|+.+.+.++|++|++.|||++...                         |..||.+||-.++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            79999999999999999999999999998621                         23589999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccC
Q 010168          355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS  432 (516)
Q Consensus       355 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~  432 (516)
                      |||++.+|..|+|.||..+..-..++-.+++++|++  ...+|..|.|||.+|++-|..++.+.+++......       
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~-------  335 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTD-------  335 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccc-------
Confidence            999999999999999999999999999999999999  88999999999999999999999999999753222       


Q ss_pred             ccccccCCCcceeecCCCCCCcccc-----------cccceEEEcCCcHHHHHHHHhhhcCCC
Q 010168          433 QGMIDKMHPRKCTVFPFHPWDEKVH-----------RRHGIVLWVPHNIEELIKLAVDKLDFP  484 (516)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~~~l~~~~~~~~~~~  484 (516)
                          ....|-.++.+|+..-+.-++           .......++...+++|++..-++|+..
T Consensus       336 ----W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~  394 (782)
T KOG3676|consen  336 ----WAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGKK  394 (782)
T ss_pred             ----eeecccccccccchhcccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence                222233333333333222111           122223455667888888877777754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=8.7e-20  Score=162.05  Aligned_cols=135  Identities=30%  Similarity=0.411  Sum_probs=96.1

Q ss_pred             cCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q 010168          290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT  367 (516)
Q Consensus       290 ~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  367 (516)
                      ..-|.|.-|..|.+||||||+.||..+++.|+.+|+.+|..+  ..+|||+|+..|+.++|+.|+++.+|+|..+..|+|
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgnt  102 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT  102 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC
Confidence            344556666666666666666666666666666666666544  236666666666666777777777788888999999


Q ss_pred             HHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          368 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       368 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      |||+||..|...+++-|+..|+-++..+++|.|||..|.-.-...+.+.-.++|...
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999875433333333334455443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=7.2e-20  Score=187.70  Aligned_cols=195  Identities=24%  Similarity=0.275  Sum_probs=158.4

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCChHHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI-KDKFGNTPLLE  307 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~  307 (516)
                      ...+....|+|-.||..|+.|.+++|+.+|+++..+|..|.+||.+|+..||..+|+.|+.+.++++. .|+.+.|+|.+
T Consensus       751 ~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  751 PLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             cccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            33456678999999999999999999999999999999999999999999999999999999999886 47888999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHhChHHHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD--YDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~  383 (516)
                      ||..|+.++|++||.+|++-..++  ..|||.+|...|..++++.|+.+|+++|.+.  ..|-.||++|+..|+.+.++.
T Consensus       831 acsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            999999999999999888765544  3478888888888888888888887777664  457788888888888888888


Q ss_pred             HHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          384 LLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       384 Ll~~g~~~~~~~-~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                      |++.|-|+|..- .+-+|+|-+|+..|..+++.+|+.+.+.
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an  951 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN  951 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhhh
Confidence            877777776643 2445666677777777777777665553

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=4e-20  Score=189.58  Aligned_cols=192  Identities=26%  Similarity=0.335  Sum_probs=102.3

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--CCCCChHHHHHHH
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK--DKFGNTPLLEAIK  310 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A~~  310 (516)
                      ..+.|+|-+||..|+.++|++||..|++-..++-...|||.+|...|..++++.|+.+|+.+|.+  .+.|-+||++|..
T Consensus       822 rtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  822 RTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             cccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence            33444555555555555555555555554444444455555555555555555555555554443  2445555555555


Q ss_pred             cCChHHHHHHHHcCCCCCcC---CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          311 CGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      .||.+.++.|++.|.++|..   +.+|+|.+|+-.|..+++.+||.+.+++..+...|-|||+-++..|.+++-++|+.+
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            55555555555555555542   234555555555555555555555555555555566666666655555555555555


Q ss_pred             CCCCCC-----------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          388 GASVFT-----------------------------------KDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       388 g~~~~~-----------------------------------~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      |+|.|.                                   +|++|+|+|.+|+..|++..+.+|++.+++.
T Consensus       982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen  982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADA 1053 (2131)
T ss_pred             ccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccCh
Confidence            555433                                   3345555555555555555555555555544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=8.2e-19  Score=137.26  Aligned_cols=89  Identities=39%  Similarity=0.565  Sum_probs=82.4

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHH
Q 010168          239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS  318 (516)
Q Consensus       239 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~  318 (516)
                      ||+||+.|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988877    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcCC
Q 010168          319 LLVKEGASLNVDD  331 (516)
Q Consensus       319 ~Ll~~g~~~~~~~  331 (516)
                      +|+++|++++.++
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999988653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=7.1e-19  Score=156.28  Aligned_cols=117  Identities=29%  Similarity=0.366  Sum_probs=91.2

Q ss_pred             ccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Q 010168          223 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  302 (516)
Q Consensus       223 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~  302 (516)
                      +.....+..+..|.+|||+||..|+..+++.|+.+|+.+|..+....||||+||.+||.++|+.|+++.+|+|..+..|+
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            33444556667788888888888888888888888888888877778888888888888888888888888888888888


Q ss_pred             hHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHH
Q 010168          303 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTA  339 (516)
Q Consensus       303 tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A  339 (516)
                      |||||||.-|...+++-|+..|+.++..+  |.+||..|
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            88888888888888888888877766533  44665544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.1e-17  Score=130.89  Aligned_cols=89  Identities=35%  Similarity=0.490  Sum_probs=52.4

Q ss_pred             HHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       305 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      ||+||+.|+.+++++|++.+.+++.  +++|||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4455555555555555555544444  44455555555555555555555666666666777777777777777777777


Q ss_pred             HHcCCCCCCCC
Q 010168          385 LEAGASVFTKD  395 (516)
Q Consensus       385 l~~g~~~~~~~  395 (516)
                      +++|++++.+|
T Consensus        79 l~~g~~~~~~n   89 (89)
T PF12796_consen   79 LEHGADVNIRN   89 (89)
T ss_dssp             HHTTT-TTSS-
T ss_pred             HHcCCCCCCcC
Confidence            77777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=99.74  E-value=7.9e-18  Score=119.52  Aligned_cols=69  Identities=45%  Similarity=0.937  Sum_probs=63.4

Q ss_pred             CcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhhhcCCCCCCcccccCCceEEEEeeeecCCeEEEe
Q 010168          441 PRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLI  512 (516)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~  512 (516)
                      |.++.+++.|++.. +. ..++++|+|++++||++++++|||+. .++++++|||+|+||+||||||+||++
T Consensus         1 ~~RVtI~~~~~~~~-~~-~~GKvi~lP~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IRDgD~L~~~   69 (69)
T PF11834_consen    1 PKRVTIFPNHPPEK-GR-RAGKVIWLPDSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIRDGDHLYLV   69 (69)
T ss_pred             CcEEEEecCCCCcc-cC-cCCEEEEcCccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence            46788999999987 33 57999999999999999999999998 799999999999999999999999985

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=2.6e-16  Score=131.30  Aligned_cols=124  Identities=45%  Similarity=0.664  Sum_probs=96.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcC
Q 010168          264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG  343 (516)
Q Consensus       264 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~  343 (516)
                      .|.+|.||||+|+..|+.+++++|+++|++.+..+..|.||||.|+..++.+++++|++.|+                  
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~------------------   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA------------------   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------------------
Confidence            45678888888888888888888888888877778888888888888777777777777654                  


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 010168          344 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  418 (516)
Q Consensus       344 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~  418 (516)
                                   +++..+..|.||+|+|+..++.+++++|+++|.+.+..+..|.||+++|...++.+++++|+
T Consensus        65 -------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          65 -------------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -------------CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                         34455566778888888888888888888887777777778888888888888888777763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=2.6e-16  Score=131.30  Aligned_cols=122  Identities=45%  Similarity=0.636  Sum_probs=105.5

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHc
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  311 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~  311 (516)
                      +..|.||||.|+..|+.++++.|++.|.+.+..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            35688999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          312 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       312 ~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      ++.+++++|++++.+                               ++..+..|.||++.|...++.+++++|
T Consensus        84 ~~~~~~~~L~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKHGAD-------------------------------VNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHcCCC-------------------------------CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            998888888887643                               344555666777777777777776665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=2.5e-15  Score=152.48  Aligned_cols=160  Identities=25%  Similarity=0.321  Sum_probs=138.0

Q ss_pred             cccchhhhHHHHHHHHh---cCCHHHHHHHHHcCCC-CCC----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--
Q 010168          228 IGKHEAELALRVNSAAY---HGDLYQLKGLIRAGAD-PNK----TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK--  297 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~---~g~~~~v~~Ll~~g~~-~~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~--  297 (516)
                      ++.....|.|.||.|.-   .++-++++.|++.-.. +|.    -...|+||||+|+.+.+.++|++|++.|||++.+  
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~  215 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC  215 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence            34556779999999987   4556889999876332 121    1246999999999999999999999999999753  


Q ss_pred             -------C--------------CCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHC
Q 010168          298 -------D--------------KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN  354 (516)
Q Consensus       298 -------d--------------~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~  354 (516)
                             |              ..|..||.+||..++.+++++|+++|||++.+|  |+|.||.-+..-..++-.+++++
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~  295 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL  295 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhc
Confidence                   1              147789999999999999999999999999876  77999999999999999999999


Q ss_pred             CCC--CCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          355 GVD--PSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       355 g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      |++  ...++..|-|||.+||..|..++.+.+++.
T Consensus       296 ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  296 GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999  888999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=8.8e-16  Score=112.91  Aligned_cols=92  Identities=37%  Similarity=0.594  Sum_probs=85.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHH
Q 010168          238 RVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  317 (516)
Q Consensus       238 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v  317 (516)
                      .+.+++.+|.++.|+..+..|.++|.. ..|+|||||||-.|+.+++++|+..|++++.+|+.|-|||..|+..||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            467899999999999999999888876 4899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcC
Q 010168          318 SLLVKEGASLNVD  330 (516)
Q Consensus       318 ~~Ll~~g~~~~~~  330 (516)
                      ++|++.|++-...
T Consensus        84 klLL~~GAdrt~~   96 (117)
T KOG4214|consen   84 KLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHcCccccee
Confidence            9999999986543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=5.9e-15  Score=137.07  Aligned_cols=135  Identities=40%  Similarity=0.541  Sum_probs=114.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHH
Q 010168          261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV  340 (516)
Q Consensus       261 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~  340 (516)
                      ....+..+.+++|.|+..+..+++++|+..|++++.+|..|.||||+|+..++.                          
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------------  119 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------------  119 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------------
Confidence            445667789999999999999999999999999999999999999999999883                          


Q ss_pred             HcCCHHHHHHHHHCCC---CCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          341 ARGDSDFLKRVLSNGV---DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       341 ~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      ..++.++++.|++.|+   ..+.++..|+||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.+
T Consensus       120 ~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL  199 (235)
T ss_pred             ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHH
Confidence            2233444444444444   4566689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcc
Q 010168          418 EDAE  421 (516)
Q Consensus       418 ~~~~  421 (516)
                      ++.+
T Consensus       200 ~~~~  203 (235)
T COG0666         200 LDKG  203 (235)
T ss_pred             HhcC
Confidence            9876

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.60  E-value=6e-15  Score=137.90  Aligned_cols=127  Identities=20%  Similarity=0.275  Sum_probs=118.2

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .++++..|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++.. .+|++.++..+.+|++||+.
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~-~~~~~~~i~~~~~g~~~g~~   84 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS-SQDRETTLAILRPVSTFILA   84 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc-CCCceEEEEEeCCCchhhhH
Confidence            45789999999999999999999999999999999999999999999999999999985 46778899999999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +++.+.++.++++|.++|.++.++.+.|..++..+|.....++..+..
T Consensus        85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~  132 (236)
T PRK09392         85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG  132 (236)
T ss_pred             HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888777766654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=1.4e-14  Score=134.57  Aligned_cols=129  Identities=37%  Similarity=0.491  Sum_probs=107.7

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---CCcCCCCC
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY-----EDITLFLIQKGV---DINIKDKF  300 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~g~---~~~~~d~~  300 (516)
                      ...+..+.+++|.|+..++.+.+++++..|++++.++..|.||||+|+..++     .++++.|++.|+   ..+.+|..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3444557889999999999999999999999999999999999999999999     999999999999   56667999


Q ss_pred             CChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 010168          301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       301 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  380 (516)
                      |.||||+|+..|+.+++++|++.|++++.                               .+..|.|+++.|+..++.++
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-------------------------------~~~~g~t~l~~a~~~~~~~~  195 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNS-------------------------------RNSYGVTALDPAAKNGRIEL  195 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcc-------------------------------cccCCCcchhhhcccchHHH
Confidence            99999999999999999999888766654                               35556666666666666666


Q ss_pred             HHHHHHcC
Q 010168          381 AKLLLEAG  388 (516)
Q Consensus       381 v~~Ll~~g  388 (516)
                      ++.+++.+
T Consensus       196 ~~~l~~~~  203 (235)
T COG0666         196 VKLLLDKG  203 (235)
T ss_pred             HHHHHhcC
Confidence            66666543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.57  E-value=1.2e-14  Score=106.92  Aligned_cols=102  Identities=25%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             HHHHHHHcCChHHHHHHHHcCCCCCcC-CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 010168          304 PLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK  382 (516)
Q Consensus       304 pL~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  382 (516)
                      .+.|++++|..+-|+-.+..|.++|.. .+++|||+|+..|+.+++++|+..|++++.+|+.|-|||..|+..||.++|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            456666667776666666666665543 3456677777777777777777777777777777888888888888888888


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHH
Q 010168          383 LLLEAGASVFTKDRWGNTPLDEG  405 (516)
Q Consensus       383 ~Ll~~g~~~~~~~~~g~tpl~~A  405 (516)
                      +|+++|++...+..+|.+.+..+
T Consensus        85 lLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHcCcccceeCCCchhHHhhc
Confidence            88888887777777776655443

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.53  E-value=6.3e-14  Score=114.86  Aligned_cols=113  Identities=35%  Similarity=0.526  Sum_probs=106.3

Q ss_pred             CccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc
Q 010168           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ  169 (516)
Q Consensus        90 ~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~  169 (516)
                      +|+.++++++..+...++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||...++.+.++
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR   80 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             ceEEEEeeeeeEEEeeccchhhHHHhhhccchh
Q 010168          170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRK  202 (516)
Q Consensus       170 ~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  202 (516)
                      ..++.|.++|.++.++.+.+.+++.+++.....
T Consensus        81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~  113 (115)
T cd00038          81 SATVRALTDSELLVLPRSDFRRLLQEYPELARR  113 (115)
T ss_pred             CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence            999999999999999999999999988765543

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=9.6e-15  Score=102.35  Aligned_cols=55  Identities=45%  Similarity=0.642  Sum_probs=33.4

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          254 LIRAG-ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       254 Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      ||++| ++++.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57778 89999999999999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=8.8e-14  Score=147.97  Aligned_cols=95  Identities=38%  Similarity=0.559  Sum_probs=89.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChH
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  315 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~  315 (516)
                      .+.|+.||..|+.+.++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCCCcC
Q 010168          316 VTSLLVKE-------GASLNVD  330 (516)
Q Consensus       316 ~v~~Ll~~-------g~~~~~~  330 (516)
                      ++++|+++       |++++..
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~  184 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPD  184 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcc
Confidence            99999998       6555543

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.51  E-value=1.3e-13  Score=126.69  Aligned_cols=118  Identities=14%  Similarity=0.199  Sum_probs=109.0

Q ss_pred             cCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCC-Ccc
Q 010168           92 KGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-PQP  170 (516)
Q Consensus        92 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~-~~~  170 (516)
                      +.++++++..+...++.+.|++|++|+.+|++++.+|+|++|.++++..+.+|++..+..+.+|++||+.+++.+. ++.
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~   85 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS   85 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence            5689999999999999999999999999999999999999999999998899999999999999999999988764 677


Q ss_pred             eEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       171 ~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .+++|.++|.++.++.+.|.+++..+|.....++..+..
T Consensus        86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  124 (211)
T PRK11753         86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR  124 (211)
T ss_pred             EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            899999999999999999999999999888777666654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=4.9e-14  Score=98.27  Aligned_cols=54  Identities=41%  Similarity=0.656  Sum_probs=37.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHH
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV  321 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  321 (516)
                      |+||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            577888888888888888888778888777777888888888888877777775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.5e-14  Score=100.27  Aligned_cols=55  Identities=40%  Similarity=0.524  Sum_probs=33.6

Q ss_pred             HHHCC-CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 010168          351 VLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  405 (516)
Q Consensus       351 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  405 (516)
                      |+++| ++++.+|..|.||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.5e-13  Score=146.26  Aligned_cols=102  Identities=24%  Similarity=0.260  Sum_probs=83.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHH
Q 010168          271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFL  348 (516)
Q Consensus       271 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v  348 (516)
                      +|+.|+..|+.++++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            5888999999999999999999999999999999999999999999999998888877654  55777777777777777


Q ss_pred             HHHHHC-------CCCCCCCCCCCCcHHHHH
Q 010168          349 KRVLSN-------GVDPSSRDYDHRTPLHVA  372 (516)
Q Consensus       349 ~~Ll~~-------g~~~~~~~~~g~t~L~~A  372 (516)
                      ++|+++       |++++..+..|.+|+..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            777777       677777777777775544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-13  Score=122.50  Aligned_cols=121  Identities=26%  Similarity=0.358  Sum_probs=73.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHH
Q 010168          269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL  348 (516)
Q Consensus       269 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v  348 (516)
                      ..||.-|...|..+....||+.--++|.+|..|.|||..|+..|+.++|++|++.|+|+|..                  
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~------------------   74 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK------------------   74 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc------------------
Confidence            34555555566666666555554445666666666666666666666666666666555532                  


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       349 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                                  ++..+.||||.|+.+|+.++.++|++.|+.+...|+-|+|+-.+|+.-||.+||..+-.
T Consensus        75 ------------qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   75 ------------QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ------------cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence                        23345566666666666666666666666666666666666666666666666665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.1e-13  Score=96.48  Aligned_cols=54  Identities=44%  Similarity=0.597  Sum_probs=44.5

Q ss_pred             CCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 010168          365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  418 (516)
Q Consensus       365 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~  418 (516)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.47  E-value=4.8e-13  Score=110.34  Aligned_cols=114  Identities=31%  Similarity=0.428  Sum_probs=103.6

Q ss_pred             CccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccc--cCC
Q 010168           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL--CNI  167 (516)
Q Consensus        90 ~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll--~~~  167 (516)
                      +|.+++++.+..+...++.+.|++|++|+++|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR   80 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence            578999999999999999999999999999999999999999999999998889999999999999999999988  446


Q ss_pred             CcceEEEEeeeeeEEEeeccchhhHHHhhhccchhh
Q 010168          168 PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV  203 (516)
Q Consensus       168 ~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~  203 (516)
                      +...++.+.+.|.++.++.+.+...+...+......
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  116 (120)
T smart00100       81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLEL  116 (120)
T ss_pred             ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence            778899999999999999999999888777654443

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.46  E-value=2e-13  Score=126.51  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             HHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeee
Q 010168          101 QIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSR  180 (516)
Q Consensus       101 ~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~  180 (516)
                      .+...++.+.|++|++|+.+|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.+++.+++|.++|.
T Consensus        26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~  105 (226)
T PRK10402         26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW  105 (226)
T ss_pred             HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence            46667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          181 LLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       181 l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      ++.++.+.+..++..+|.....++..+..
T Consensus       106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~  134 (226)
T PRK10402        106 CLALPMKDCRPLLLNDALFLRKLCKFLSH  134 (226)
T ss_pred             EEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999887776666654

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=2.1e-13  Score=125.92  Aligned_cols=128  Identities=27%  Similarity=0.405  Sum_probs=116.2

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCee
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  158 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~f  158 (516)
                      ....+.+++.-+|+.|+++++.++...+..+.+++|+.|+.||+.++.||+|-+|.+.|++.   |  ..+..+.+|..|
T Consensus       118 ~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~---~--~~v~~~~~g~sF  192 (368)
T KOG1113|consen  118 RRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN---G--TYVTTYSPGGSF  192 (368)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC---C--eEEeeeCCCCch
Confidence            44556788899999999999999999999999999999999999999999999999999982   3  468899999999


Q ss_pred             eccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       159 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      ||++++++.|+.+|+.|.+++.+|.+++..|..++..+....+.++...++..
T Consensus       193 GElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~  245 (368)
T KOG1113|consen  193 GELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESV  245 (368)
T ss_pred             hhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999888877777777666543

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.46  E-value=2.3e-13  Score=106.72  Aligned_cols=90  Identities=32%  Similarity=0.565  Sum_probs=86.3

Q ss_pred             ceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccc
Q 010168          109 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQS  188 (516)
Q Consensus       109 ~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~  188 (516)
                      +.|++|++|+++|++.+.+|+|++|.++++..+.+|+..++..+.+|++||+.+++.+.++..++.|.++|.++.++++.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~   81 (91)
T PF00027_consen    2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRED   81 (91)
T ss_dssp             EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHH
T ss_pred             eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHH
Confidence            68999999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhhc
Q 010168          189 FTNILEIYFC  198 (516)
Q Consensus       189 ~~~ll~~~~~  198 (516)
                      |.++++++|+
T Consensus        82 ~~~~~~~~p~   91 (91)
T PF00027_consen   82 FLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHSHH
T ss_pred             HHHHHHhCcC
Confidence            9999998873

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.45  E-value=6.4e-13  Score=124.15  Aligned_cols=125  Identities=13%  Similarity=0.141  Sum_probs=110.0

Q ss_pred             hhcccCccCCCHHHHHHHHHHhhc-ceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccc
Q 010168           85 IEKVSLFKGCSSEFINQIVIRVHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  163 (516)
Q Consensus        85 l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~l  163 (516)
                      +++.+.|..++++++..|...... +.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+.+|++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            555666667999999999988764 6899999999999999999999999999999999999999999999999998766


Q ss_pred             ccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          164 LCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       164 l~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +. .+.+.+++|.+++.++.++++.|.+++..+|.....++..+..+
T Consensus        95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~  140 (235)
T PRK11161         95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGE  140 (235)
T ss_pred             cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            54 45567899999999999999999999999998888877776543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=9.9e-13  Score=117.46  Aligned_cols=117  Identities=22%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCChHHHHHHHcCCh
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI-KDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~~~~~~  314 (516)
                      ..||..|...|+.+....||+.--++|.+|..|.|+|..|+..|+.++|+.|++.|+|+|. ++..+.||||.|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4577888888888888888877556788888888888888888888888888888888875 456788888888888888


Q ss_pred             HHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHH
Q 010168          315 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVL  352 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll  352 (516)
                      ++.++|++.|+.+...+  |+|+-..|+--|+.+||..+-
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            88888888888777655  567788888888877776553

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=4.8e-13  Score=128.61  Aligned_cols=92  Identities=32%  Similarity=0.436  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      ..|.-|+..|-+++|+..+..--|+...+..|-||||-|+..||.++|++|++.|+++|..|.+||||||.|+..++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            34667888999999999998888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCC
Q 010168          317 TSLLVKEGASLN  328 (516)
Q Consensus       317 v~~Ll~~g~~~~  328 (516)
                      ++.|++.|+-+-
T Consensus       632 ckqLVe~Gaavf  643 (752)
T KOG0515|consen  632 CKQLVESGAAVF  643 (752)
T ss_pred             HHHHHhccceEE
Confidence            999999887653

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.43  E-value=7.2e-13  Score=121.84  Aligned_cols=124  Identities=23%  Similarity=0.351  Sum_probs=109.9

Q ss_pred             hcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccccc
Q 010168           86 EKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC  165 (516)
Q Consensus        86 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~  165 (516)
                      ...+.|..++.+....+......+.+++|++|+++|++++.+|+|.+|.++++....+|++.++..+.+|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            45667777888888888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          166 NIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       166 ~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +.+++++++|.+++.++.++++.|..++..+|.....++..+..
T Consensus        83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~  126 (214)
T COG0664          83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR  126 (214)
T ss_pred             CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence            88999999999999999999999999887755555555444443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=3.2e-13  Score=129.83  Aligned_cols=97  Identities=30%  Similarity=0.394  Sum_probs=89.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       336 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                      |.-|+..|.+++|+..+..--|+...+..|.||||-|+..||.+||++|++.|+++|+.|++||||||+|+.+++..+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            56688999999999999888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccCccccccccC
Q 010168          416 LLEDAECTQLSEFHYCS  432 (516)
Q Consensus       416 ~L~~~~~~~~~~~~~~~  432 (516)
                      .|++.|+..........
T Consensus       634 qLVe~GaavfAsTlSDm  650 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDM  650 (752)
T ss_pred             HHHhccceEEeeecccc
Confidence            99999998766544433

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.35  E-value=4.2e-12  Score=128.04  Aligned_cols=117  Identities=20%  Similarity=0.234  Sum_probs=106.3

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      ...+++++++|++++++++..+...++.+.|++|++|+++|+.++.+|+|++|.|+++..+.+| +.++..+++|++||+
T Consensus         6 ~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~   84 (413)
T PLN02868          6 VVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGY   84 (413)
T ss_pred             HHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeeh
Confidence            4467899999999999999999999999999999999999999999999999999999988887 678999999999997


Q ss_pred             cccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccc
Q 010168          161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDG  200 (516)
Q Consensus       161 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~  200 (516)
                      .  +.+.++..+++|.++|.++.++++.+..+...+....
T Consensus        85 ~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~  122 (413)
T PLN02868         85 G--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDS  122 (413)
T ss_pred             h--hCCCCcccEEEECCCEEEEEEcHHHHhhhcccccccc
Confidence            5  6788899999999999999999999988776665443

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.34  E-value=1.6e-12  Score=125.67  Aligned_cols=124  Identities=21%  Similarity=0.355  Sum_probs=112.4

Q ss_pred             HHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCC-CCeeeEEEecC
Q 010168           76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED-GSEETVSQLQP  154 (516)
Q Consensus        76 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~-g~~~~l~~l~~  154 (516)
                      .....+..+|+++|+|.++|++.+..++..++...|.+|++|++||+.++.+|+|.+|.|.+.+.+.. +.++.+..+..
T Consensus       265 ~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~k  344 (732)
T KOG0614|consen  265 ERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNK  344 (732)
T ss_pred             HHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccc
Confidence            34467889999999999999999999999999999999999999999999999999999999987654 67778999999


Q ss_pred             CCeeeccccccCCCcceEEEEeee-eeEEEeeccchhhHHHhhhcc
Q 010168          155 NSSFGEVSILCNIPQPYTVCICEL-SRLLRIDKQSFTNILEIYFCD  199 (516)
Q Consensus       155 G~~fGe~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~ll~~~~~~  199 (516)
                      |++|||-+++...-|++++.|..+ .+++.++++.|..++....+.
T Consensus       345 Gd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l  390 (732)
T KOG0614|consen  345 GDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEEL  390 (732)
T ss_pred             cchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHh
Confidence            999999999999999999999988 899999999998877554433

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.31  E-value=2.6e-11  Score=118.97  Aligned_cols=126  Identities=20%  Similarity=0.289  Sum_probs=114.8

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .+++.++|+|+.++++++.+|...+...+|.+||+|+..|.+...+|+|.+|.|+++.  .+|+  ++..+..|+.||-.
T Consensus         6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~~   81 (610)
T COG2905           6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGFS   81 (610)
T ss_pred             HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccch
Confidence            4678999999999999999999999999999999999999999999999999999874  4444  89999999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      +++...+....+.+.+++.++.++++.|.+++.+++.+..-+......+.
T Consensus        82 ~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~  131 (610)
T COG2905          82 SLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRL  131 (610)
T ss_pred             hhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999988889999999999999999999999999998877766655543

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=2.9e-12  Score=123.88  Aligned_cols=145  Identities=21%  Similarity=0.276  Sum_probs=123.8

Q ss_pred             hhhHHHhhccCCHHHHH--HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceE
Q 010168           58 SSFIIDLLSCLPWDVIY--KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL  135 (516)
Q Consensus        58 ~~f~~d~~~~~P~~~~~--~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v  135 (516)
                      +-|-+|..+++|.....  .-+.++....+++..|+++|...++.+++.+|.+..|.+|+.|++|||+++++|++..|.+
T Consensus       127 t~~~~~~s~~~~l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~  206 (732)
T KOG0614|consen  127 TNFTIDPSSSITLPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGEL  206 (732)
T ss_pred             cccccccccccccccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceE
Confidence            34556666667665443  2334677788999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          136 EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       136 ~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      .|.+   +  ...+..+++|..|||.+++++.+|+++++|.+++.+|.|.++.|+.+|+..-....+-..++
T Consensus       207 ~V~~---~--g~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~f  273 (732)
T KOG0614|consen  207 QVSR---E--GKLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNF  273 (732)
T ss_pred             EEee---C--CeeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987   3  36899999999999999999999999999999999999999999999987765544433333

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.25  E-value=2.2e-11  Score=110.14  Aligned_cols=96  Identities=25%  Similarity=0.317  Sum_probs=88.4

Q ss_pred             CCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc--ceEEEEeeeeeEEEeeccchhh
Q 010168          114 GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ--PYTVCICELSRLLRIDKQSFTN  191 (516)
Q Consensus       114 ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~--~~tv~a~~~~~l~~l~~~~~~~  191 (516)
                      |++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.+.  ..+++|.++|.++.++.+.|.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~   80 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK   80 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence            78999999999999999999999999999999999999999999999999877653  4789999999999999999999


Q ss_pred             HHHhhhccchhhhhhhhh
Q 010168          192 ILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       192 ll~~~~~~~~~~l~~ll~  209 (516)
                      ++..+|.....++..+..
T Consensus        81 l~~~~p~l~~~~~~~l~~   98 (193)
T TIGR03697        81 AIEEDPDLSMLLLQGLSS   98 (193)
T ss_pred             HHHHChHHHHHHHHHHHH
Confidence            999999888888777654

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.24  E-value=3e-11  Score=112.10  Aligned_cols=105  Identities=18%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             HHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeE
Q 010168          102 IVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRL  181 (516)
Q Consensus       102 l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l  181 (516)
                      +....+.+.|++|++|+.+|++++.+|+|++|.|+++..+.+|++.++..+.+|++||+.   .+.++.++++|.++|.+
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v  110 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV  110 (230)
T ss_pred             ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence            345677899999999999999999999999999999999999999999999999999964   45667899999999999


Q ss_pred             EEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          182 LRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       182 ~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +.++.+.|.+++..+|.....++..+..
T Consensus       111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~  138 (230)
T PRK09391        111 RLIKRRSLEQAAATDVDVARALLSLTAG  138 (230)
T ss_pred             EEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence            9999999999999999888887776654

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.19  E-value=7e-11  Score=107.65  Aligned_cols=84  Identities=25%  Similarity=0.364  Sum_probs=77.1

Q ss_pred             HhhcceeCCCCeEEecCC--ccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEE
Q 010168          105 RVHEEFFLPGEVIMEQGN--VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL  182 (516)
Q Consensus       105 ~~~~~~~~~ge~i~~~g~--~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~  182 (516)
                      .++.+.|++|++|+++|+  +++.+|+|++|.|+++..+.+|++.++..+.+|++||+.+++ +.+++.++.|.++|.++
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~   83 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID   83 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence            456789999999999999  779999999999999999999999999999999999997654 57788999999999999


Q ss_pred             Eeeccch
Q 010168          183 RIDKQSF  189 (516)
Q Consensus       183 ~l~~~~~  189 (516)
                      .++...+
T Consensus        84 ~i~~~~~   90 (202)
T PRK13918         84 VLNPALM   90 (202)
T ss_pred             EEEHHHc
Confidence            9998876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.06  E-value=1.1e-10  Score=111.70  Aligned_cols=159  Identities=28%  Similarity=0.337  Sum_probs=119.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 010168          335 FLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  413 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  413 (516)
                      -||..++.|+.++.-.|+..|+++|..+ ..|.||||+|++.|+..-+++|+-.|||+++.|.+|+||+.+|-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            3788888888888888888888888776 468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCC-----cHHHHHHHHhhhcCCCCCCc
Q 010168          414 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPH-----NIEELIKLAVDKLDFPDGHS  488 (516)
Q Consensus       414 v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~l~~~~~~~~~~~~~~~  488 (516)
                      .+-|++..-....+..           ..-|+--|-|        ..+.-+.+|.     .+.|+.+.+.+++..-. .+
T Consensus       216 aeRl~e~~y~vtDR~~-----------f~lcgrKpDH--------kngqhfiIP~~~~sld~se~~k~ar~klq~l~-n~  275 (669)
T KOG0818|consen  216 AERLVEIQYELTDRLA-----------FYLCGRKPDH--------KNGQHFIIPQMADSLDLSELAKAAKKKLQSLS-NH  275 (669)
T ss_pred             HHHHHHHHHHHHHHHH-----------HHHhcCCCcc--------cCCcceeccccccchhHHHHHHHHHHHHhhcc-hh
Confidence            9999886543332211           1112211222        2222334442     36678888888888777 55


Q ss_pred             ccccCCceEEEEeeeecCCeEEEee
Q 010168          489 ILSEDGGKILDVDMINDGQKLYLIS  513 (516)
Q Consensus       489 ~~~~~~~~i~d~~~~~~~~~~~~~~  513 (516)
                      ++.+-.-++.|.-++|++|.++.++
T Consensus       276 ~FeeL~mD~yDEvdRRE~eavW~~t  300 (669)
T KOG0818|consen  276 LFEELAMDVYDEVDRRETDAVWLAT  300 (669)
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHhhh
Confidence            7777777777777788888777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.06  E-value=2.1e-10  Score=109.34  Aligned_cols=103  Identities=34%  Similarity=0.486  Sum_probs=92.0

Q ss_pred             ccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCC
Q 010168          223 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFG  301 (516)
Q Consensus       223 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g  301 (516)
                      ++.-..+..+..+..++++||..|++..++.+.-.|.|++..|.+.+|+||.||..|+.+++++|++. +.+++.+|.+|
T Consensus       494 DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~  573 (622)
T KOG0506|consen  494 DPRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWG  573 (622)
T ss_pred             CcccccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccC
Confidence            33333445566677889999999999999999999999999999999999999999999999999985 89999999999


Q ss_pred             ChHHHHHHHcCChHHHHHHHHcCC
Q 010168          302 NTPLLEAIKCGHDGVTSLLVKEGA  325 (516)
Q Consensus       302 ~tpL~~A~~~~~~~~v~~Ll~~g~  325 (516)
                      +|||.-|...+|.+++++|-+.-.
T Consensus       574 rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  574 RTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CCcchHhHhcCcHHHHHHHHHHhc
Confidence            999999999999999999987543

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.04  E-value=2e-10  Score=106.43  Aligned_cols=117  Identities=22%  Similarity=0.411  Sum_probs=107.3

Q ss_pred             HHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCC
Q 010168           76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN  155 (516)
Q Consensus        76 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G  155 (516)
                      -...+|.++|+++|+++.+...+...+...+..+.|.+|+.|..+|++++.+|+|.+|.|.+.... +|  ..+ .++.|
T Consensus       233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~  308 (368)
T KOG1113|consen  233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKG  308 (368)
T ss_pred             hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechh
Confidence            345788899999999999999999999999999999999999999999999999999999998744 33  445 99999


Q ss_pred             CeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhh
Q 010168          156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY  196 (516)
Q Consensus       156 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~  196 (516)
                      ++||+.+++.+.|+.+++.|.....+..+.+..|+.++.-+
T Consensus       309 dyfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc  349 (368)
T KOG1113|consen  309 DYFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC  349 (368)
T ss_pred             hhcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence            99999999999999999999999999999999999988644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.02  E-value=1.4e-09  Score=104.32  Aligned_cols=91  Identities=29%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      ..+....||..++.|+++..-.||..|+++|..+ ..|.||||.|+..|+..-+++|+-+|+|++..|..|.||+.+|-.
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh
Confidence            3455678999999999999999999999999887 569999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHH
Q 010168          311 CGHDGVTSLLVK  322 (516)
Q Consensus       311 ~~~~~~v~~Ll~  322 (516)
                      .||.++.+-|++
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            999998888877

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.91  E-value=4.4e-09  Score=102.84  Aligned_cols=102  Identities=28%  Similarity=0.362  Sum_probs=88.1

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCCC--CC--CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCh
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGAD--PN--KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  303 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  303 (516)
                      +...+......|..|+...++..+-+||.+|..  +|  ..+.+|+||||+||+.|+..+.++|+-+|+|+..+|..|+|
T Consensus       617 l~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t  696 (749)
T KOG0705|consen  617 LPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRT  696 (749)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCch
Confidence            344444455678899999999999999999854  33  34567899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCCCCc
Q 010168          304 PLLEAIKCGHDGVTSLLVKEGASLNV  329 (516)
Q Consensus       304 pL~~A~~~~~~~~v~~Ll~~g~~~~~  329 (516)
                      ||.||-+.|..+|+..|+++|+..+.
T Consensus       697 ~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  697 ALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hhhhHhhcccHHHHHHHHHcCCCccc
Confidence            99999999999999999999986553

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.90  E-value=1.6e-09  Score=103.57  Aligned_cols=89  Identities=42%  Similarity=0.647  Sum_probs=84.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Q 010168          334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKN  412 (516)
Q Consensus       334 ~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~  412 (516)
                      .++.+|+..|++..++.+.-.|.|++..|.+.+|+||+||..|+.+++++|++ .+.+++.+|..|+|||+-|...+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            46999999999999999999999999999999999999999999999999998 57999999999999999999999999


Q ss_pred             HHHHHHHccc
Q 010168          413 LIKLLEDAEC  422 (516)
Q Consensus       413 ~v~~L~~~~~  422 (516)
                      ++++|.++..
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=2.4e-09  Score=63.74  Aligned_cols=29  Identities=45%  Similarity=0.888  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 010168          267 DGRSPLHLATSRGYEDITLFLIQKGVDIN  295 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  295 (516)
                      +|+||||+||..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777776665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.82  E-value=6.1e-09  Score=64.01  Aligned_cols=33  Identities=48%  Similarity=0.874  Sum_probs=26.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q 010168          267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDK  299 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~  299 (516)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478888888888888888888888888887663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=6.9e-09  Score=61.76  Aligned_cols=30  Identities=50%  Similarity=0.645  Sum_probs=23.3

Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHcCCCCCC
Q 010168          364 DHRTPLHVAASEGLYLMAKLLLEAGASVFT  393 (516)
Q Consensus       364 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  393 (516)
                      +|+||||+||+.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            477888888888888888888888887763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.79  E-value=1.6e-08  Score=98.56  Aligned_cols=117  Identities=27%  Similarity=0.313  Sum_probs=79.7

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcCCCCCCChHHHHHHHcCChHH
Q 010168          239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD--INIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       239 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      +..|+..+++--++.....|.++-.++.+..|.||+|+..|+-++|+|+|++|..  ++..|..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4566666666666666666777767777777777777777777777777777653  44556666666666666666666


Q ss_pred             HHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          317 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       317 v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      +++|++.|++                               +...|..|.||-..|-+.|++++.-+|-.
T Consensus       950 c~~lvdagas-------------------------------l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGAS-------------------------------LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchh-------------------------------heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            6666655554                               45566777788777777777777777754

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.77  E-value=3.6e-09  Score=107.50  Aligned_cols=84  Identities=26%  Similarity=0.249  Sum_probs=78.4

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHH
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  306 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~  306 (516)
                      .+..+..|+++||.|+..|..+++++|+++|++++.+| ..|+||||-|...|+++|+-.||.+|+.+..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            46677889999999999999999999999999999999 46999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 010168          307 EAIKC  311 (516)
Q Consensus       307 ~A~~~  311 (516)
                      .-++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            88773

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=1.5e-08  Score=62.22  Aligned_cols=33  Identities=45%  Similarity=0.623  Sum_probs=28.3

Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCC
Q 010168          364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  396 (516)
Q Consensus       364 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  396 (516)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999998888763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.73  E-value=3.4e-08  Score=96.81  Aligned_cols=90  Identities=32%  Similarity=0.425  Sum_probs=80.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 010168          335 FLCTAVARGDSDFLKRVLSNGVDP----SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  410 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  410 (516)
                      -|..|....++..+-+|+.+|...    ...+.+|+|+||+||+.|++.+.++|+-+|+|+..+|..|+|||.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            367788888899999999988543    2345678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccCc
Q 010168          411 KNLIKLLEDAECTQ  424 (516)
Q Consensus       411 ~~~v~~L~~~~~~~  424 (516)
                      .+|+.+|+++|...
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999754

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=6.3e-09  Score=105.83  Aligned_cols=84  Identities=32%  Similarity=0.473  Sum_probs=64.5

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHH
Q 010168          261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTA  339 (516)
Q Consensus       261 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A  339 (516)
                      .|..|..|+|+||+|+..|..++++||+++|+|++.+| ..|+||||-|+..|+.+++.+|+++|+.             
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-------------  111 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-------------  111 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-------------
Confidence            46777788888888888888888888888888888877 4577888877777777777776666544             


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHh
Q 010168          340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE  375 (516)
Q Consensus       340 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  375 (516)
                                        +..+|.+|..||..-++-
T Consensus       112 ------------------L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 ------------------LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             ------------------eEEecccCCCHHHHHhhc
Confidence                              456788899999887764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=3.5e-08  Score=96.24  Aligned_cols=87  Identities=28%  Similarity=0.412  Sum_probs=77.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          237 LRVNSAAYHGDLYQLKGLIRA--GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      .|||.++...+.+-+..++..  +..++..|..|+||||+|+..|+.+.++.|+.+|+++..+|..|+||||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            569999999988887775433  456788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 010168          315 GVTSLLVKE  323 (516)
Q Consensus       315 ~~v~~Ll~~  323 (516)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888877764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=5.1e-08  Score=95.19  Aligned_cols=116  Identities=28%  Similarity=0.347  Sum_probs=84.0

Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhChHHHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVD--PSSRDYDHRTPLHVAASEGLYLMA  381 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v  381 (516)
                      .-|+..++.--+..+..+|.++-..+  ..+.||+|+..|+-++|++++++|..  ++..|..|.|+||-|+..++-.++
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc  950 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC  950 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence            33444444443444444444443322  23555666666666666666655532  345678899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010168          382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  421 (516)
Q Consensus       382 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~  421 (516)
                      ++|++.|++....|..|.||-.-|-+.|+.++..+|.+..
T Consensus       951 ~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  951 QLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999999999999999999999999999997644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=7.3e-08  Score=94.07  Aligned_cols=86  Identities=37%  Similarity=0.402  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Q 010168          335 FLCTAVARGDSDFLKRVL--SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN  412 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll--~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~  412 (516)
                      |+|+++...+.+-+..++  +.+..++..|..|+||||+|+..|+.+.++.|+.+|+++..+|+.||+|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            367777666665444433  334567888899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHc
Q 010168          413 LIKLLEDA  420 (516)
Q Consensus       413 ~v~~L~~~  420 (516)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            87766643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.52  E-value=6e-07  Score=92.88  Aligned_cols=114  Identities=20%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC
Q 010168          238 RVNSAAYHGDLYQLKGLIRAG----ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  313 (516)
Q Consensus       238 ~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~  313 (516)
                      ....|+..|+...|+..++..    .++|..|.-|+++|+.|..+.+.+++++|++++...       ..+|.+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            456799999999999988753    456888899999999999999999999999996554       348999999999


Q ss_pred             hHHHHHHHHcCCCCCc------------CCcchHHHHHHHcCCHHHHHHHHHCCCCC
Q 010168          314 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSNGVDP  358 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~------------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~  358 (516)
                      .++|+.++.+-.....            ...-||+.+||..++.||++.|+++|+.+
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            9999999987443221            11224455555555555555555554444

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.45  E-value=8.3e-08  Score=98.91  Aligned_cols=115  Identities=25%  Similarity=0.313  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEe
Q 010168           97 EFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCIC  176 (516)
Q Consensus        97 ~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~  176 (516)
                      .++..+...+......+|+.+++|||.++.+|+|++|+++-......|+..++..++.|+.+|++..+...++..|+.|.
T Consensus       499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av  578 (1158)
T KOG2968|consen  499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV  578 (1158)
T ss_pred             HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence            34555566778899999999999999999999999999998876667777789999999999999999999999999999


Q ss_pred             eeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          177 ELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       177 ~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      .++++.++|..-+..+...+|....+..+.+.+..
T Consensus       579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~  613 (1158)
T KOG2968|consen  579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI  613 (1158)
T ss_pred             eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999999998888777766544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.44  E-value=1.3e-07  Score=100.55  Aligned_cols=91  Identities=37%  Similarity=0.420  Sum_probs=84.3

Q ss_pred             CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 010168          330 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  409 (516)
Q Consensus       330 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  409 (516)
                      ..+.++||.|+..+..-++++|+++|+++|..|..|+||||.+...|+...+..|+++|+++++.+.+|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CHHHHHHHHHc
Q 010168          410 NKNLIKLLEDA  420 (516)
Q Consensus       410 ~~~~v~~L~~~  420 (516)
                      +.+++-++.-.
T Consensus       734 ~~d~~~l~~l~  744 (785)
T KOG0521|consen  734 NADIVLLLRLA  744 (785)
T ss_pred             cccHHHHHhhh
Confidence            87777666544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.44  E-value=1.2e-06  Score=90.83  Aligned_cols=121  Identities=24%  Similarity=0.284  Sum_probs=86.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC----CCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHH
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA  341 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g----~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~  341 (516)
                      ..+.--...|+..|+...|+..++..    .++|..|.-|+++|+.|+.+.+.++.++|+++....     +.+|.+|+.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~   97 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIA   97 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHH
Confidence            34455678899999999999998853    468889999999999999999999999999987655     567888888


Q ss_pred             cCCHHHHHHHHHCCCCCCC----------CCCCCCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          342 RGDSDFLKRVLSNGVDPSS----------RDYDHRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       342 ~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      .|..++|+.++.+......          .-..+.|||.+||..++.|+++.|+++|+.+
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            8888888888876432211          1122345555555555555555555555444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=82.17  Aligned_cols=72  Identities=26%  Similarity=0.298  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      --|..||+.|+.+.|++|++.|.++|..|....+||.+|+..||.++||+||++||-...-..+|..++.-|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            358899999999999999999999999999999999999999999999999999986655455666654433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.31  E-value=2e-06  Score=73.04  Aligned_cols=70  Identities=23%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       355 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      +.++|.+|..||||++.|+..|+.+.|.+|+.+| +.+...|..|.+++.+|-+.|+.+.++.|.+.-.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4578999999999999999999999999999999 889999999999999999999999999998864433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.30  E-value=8.2e-07  Score=93.87  Aligned_cols=129  Identities=20%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             ccccccchhhhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcCCCCCCC
Q 010168          225 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGN  302 (516)
Q Consensus       225 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~  302 (516)
                      ..........+.|.+|.++..+..-+++.+++. |......|.+|.-.+|+ |..++.+.+-+|. -.|..++.+|..|+
T Consensus       564 ~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  564 ENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             hhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence            334455667789999999999999999999986 77777888888888898 4555566555554 47899999999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHcCCCCCc--------CCcchHHHHHHHcCCHHHHHHHHHC
Q 010168          303 TPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRVLSN  354 (516)
Q Consensus       303 tpL~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~~~~~~v~~Ll~~  354 (516)
                      ||||||+..|+..++..|++.|++...        .+|.|+-..|..+|+..+..+|-+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999999988776543        3466777788888888888777765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=1.8e-06  Score=73.24  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCC
Q 010168          258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA  325 (516)
Q Consensus       258 g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~  325 (516)
                      +.++|.+|..|||||+.|+..|+.+.+.||+.+| +.+...|..|.+++.+|-+.|+.+.++.|-+...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4578888888888888888888888888888888 7888888888888888888888888888887643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.22  E-value=9.9e-07  Score=93.96  Aligned_cols=88  Identities=33%  Similarity=0.418  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..+.++||.|+..|..-+++.|++.|+++|..|..|+||||.+...|+...+..|+++|++++..+.+|.+||++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            34567777777777777777777777777777777777777777777777777777777777777777777777776665


Q ss_pred             ChHHHHHH
Q 010168          313 HDGVTSLL  320 (516)
Q Consensus       313 ~~~~v~~L  320 (516)
                      +.+++-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            55544433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=3.9e-06  Score=78.61  Aligned_cols=62  Identities=35%  Similarity=0.571  Sum_probs=57.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC
Q 010168          269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD  330 (516)
Q Consensus       269 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  330 (516)
                      .--|..||+.|+.+.|++|++.|.++|..|+...+||.+|+..||.++|++|+++||-....
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            44689999999999999999999999999999999999999999999999999999876543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.06  E-value=5.1e-06  Score=88.05  Aligned_cols=124  Identities=24%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcC
Q 010168          265 DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG  343 (516)
Q Consensus       265 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~  343 (516)
                      ...|+|-+|+++..++.-.++.+++- |......|.+|.-.+|. |..++                              
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg------------------------------  619 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALG------------------------------  619 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcC------------------------------
Confidence            34566666666666666666666653 44444445555555555 23333                              


Q ss_pred             CHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHH
Q 010168          344 DSDFLKRVL-SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF------TKDRWGNTPLDEGRMCGNKNLIKL  416 (516)
Q Consensus       344 ~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~tpl~~A~~~~~~~~v~~  416 (516)
                       +++.-+|+ -.|..++.+|..||||||+|+..|+..++..|.+.|++..      .....|.|+-..|..+|+..+.-+
T Consensus       620 -~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~  698 (975)
T KOG0520|consen  620 -YEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGY  698 (975)
T ss_pred             -CceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHH
Confidence             33333333 2456778889999999999999999999999998776543      334568999999999999988888


Q ss_pred             HHHc
Q 010168          417 LEDA  420 (516)
Q Consensus       417 L~~~  420 (516)
                      |-+.
T Consensus       699 lse~  702 (975)
T KOG0520|consen  699 LSEK  702 (975)
T ss_pred             Hhhh
Confidence            8664

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.52  E-value=0.00019  Score=74.96  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=93.2

Q ss_pred             HHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccc----cccCCC---cceEEE
Q 010168          102 IVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS----ILCNIP---QPYTVC  174 (516)
Q Consensus       102 l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~----ll~~~~---~~~tv~  174 (516)
                      ++.+++.+.+..|+++++.|++.+.+|.+.+|...++....+|++..+..+.+|+.|-..-    .+.+.|   +...++
T Consensus       111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak  190 (1158)
T KOG2968|consen  111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK  190 (1158)
T ss_pred             echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence            3477888999999999999999999999999999999999999999999999997665532    233333   457789


Q ss_pred             EeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          175 ICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       175 a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      |.++|.+..+|.+.|....+.+|.....+++.++.+
T Consensus       191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTR  226 (1158)
T KOG2968|consen  191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTR  226 (1158)
T ss_pred             eecCceEEEeccchhhhhhccChHHHHHHHHHHHHH
Confidence            999999999999999999999998888877766644

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.12  E-value=0.00053  Score=67.05  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=52.5

Q ss_pred             HHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          248 LYQLKGLIRAGADPN------KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       248 ~~~v~~Ll~~g~~~~------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      ...++.|.+.+.+.|      ..+.--.|+||||+..|..++|.+||+.|+|+...|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            456778888776654      23344679999999999999999999999999999999999999887

>smart00248 ANK ankyrin repeats

Probab=97.03  E-value=0.0012  Score=38.12  Aligned_cols=27  Identities=48%  Similarity=0.892  Sum_probs=15.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVDI  294 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  294 (516)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=96.97  E-value=0.0095  Score=49.52  Aligned_cols=102  Identities=17%  Similarity=0.109  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHH-hhcceeCCCCeEEecCCc-cCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccc-----c
Q 010168           93 GCSSEFINQIVIR-VHEEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL-----C  165 (516)
Q Consensus        93 ~l~~~~l~~l~~~-~~~~~~~~ge~i~~~g~~-~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll-----~  165 (516)
                      ++|......++.+ .+.....+|+.-.-||.+ .+.+-++++|++++..   +|  +.+..+.|-++.......     .
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g--~fLH~I~p~qFlDSPEW~s~~~s~   88 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DG--RFLHYIYPYQFLDSPEWESLRPSE   88 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CC--EeeEeecccccccChhhhccccCC
Confidence            5788888888877 777899999999999865 5899999999999987   44  567888888877765553     3


Q ss_pred             CCCcceEEEEeeeeeEEEeeccchhhHHHhhhcc
Q 010168          166 NIPQPYTVCICELSRLLRIDKQSFTNILEIYFCD  199 (516)
Q Consensus       166 ~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~  199 (516)
                      +.....|+.|.++|..+..+++.+.-++...+..
T Consensus        89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L  122 (153)
T PF04831_consen   89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL  122 (153)
T ss_pred             CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence            3456799999999999999999999999887754

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.85  E-value=0.0023  Score=62.72  Aligned_cols=72  Identities=31%  Similarity=0.362  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          344 DSDFLKRVLSNGVDPSS------RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       344 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      -...+++|.++++..|.      .+..-.|+||+|+..|.-++|.+||+.|+|+..+|..|+||..++.   +.++-..+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            35678888888766543      3455679999999999999999999999999999999999999887   45555555


Q ss_pred             H
Q 010168          418 E  418 (516)
Q Consensus       418 ~  418 (516)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=96.75  E-value=0.012  Score=52.32  Aligned_cols=95  Identities=11%  Similarity=0.033  Sum_probs=75.0

Q ss_pred             HHHHHHHhhcceeCCCCeE-EecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEee
Q 010168           99 INQIVIRVHEEFFLPGEVI-MEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICE  177 (516)
Q Consensus        99 l~~l~~~~~~~~~~~ge~i-~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~  177 (516)
                      ...+....++..+++|..+ +.+......+|++.+|.+.+..  .||  ..+....+-..||-...+......+...|.+
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~   90 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG   90 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence            4455566777899999997 5444444779999999999943  343  6777888888999877766666668899999


Q ss_pred             eeeEEEeeccchhhHHHhhh
Q 010168          178 LSRLLRIDKQSFTNILEIYF  197 (516)
Q Consensus       178 ~~~l~~l~~~~~~~ll~~~~  197 (516)
                      +|.++.++.+++.+++++..
T Consensus        91 ~c~~~~i~~~~~~~iie~~~  110 (207)
T PRK11832         91 NCTGYHLPAKQTITLIEQNQ  110 (207)
T ss_pred             ccEEEEeeHHHHHHHHHHhc
Confidence            99999999999999998654

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=96.73  E-value=0.0058  Score=62.07  Aligned_cols=114  Identities=15%  Similarity=0.248  Sum_probs=89.4

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhccee-CCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFF-LPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ....+++.+.|-|.+++-....+++..|....+ .+|.+++..|+.-++.++|++|.|++.+  ++|+.   ..+.-|+.
T Consensus       277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~---e~l~mGnS  351 (1283)
T KOG3542|consen  277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR---EELKMGNS  351 (1283)
T ss_pred             HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce---EEeecccc
Confidence            445678899999999999999999988776444 7899999999999999999999999985  67764   45677999


Q ss_pred             eeccccccCCCcceEEE-EeeeeeEEEeeccchhhHHHhhh
Q 010168          158 FGEVSILCNIPQPYTVC-ICELSRLLRIDKQSFTNILEIYF  197 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~-a~~~~~l~~l~~~~~~~ll~~~~  197 (516)
                      ||..............+ -..+|+..++..+++-.++....
T Consensus       352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ve  392 (1283)
T KOG3542|consen  352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVE  392 (1283)
T ss_pred             cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHHH
Confidence            99766654433333333 35679999999999988876543

>smart00248 ANK ankyrin repeats

Probab=96.73  E-value=0.0027  Score=36.48  Aligned_cols=27  Identities=52%  Similarity=0.786  Sum_probs=15.9

Q ss_pred             CCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          365 HRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       365 g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666655544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.31  E-value=0.033  Score=47.89  Aligned_cols=74  Identities=15%  Similarity=0.036  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      ....|..|+..+-+.+++..-+...+-   -...++.+-.||+..+.++|+|+-+.   +...+  -.+-+..|....+.
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~~--~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIYN--PEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCCC--chhhhhhhhhccch
Confidence            345666777777777777765442211   13456667777777777777777332   22211  22345566666665


Q ss_pred             HH
Q 010168          315 GV  316 (516)
Q Consensus       315 ~~  316 (516)
                      ++
T Consensus       118 sL  119 (192)
T PF03158_consen  118 SL  119 (192)
T ss_pred             hH
Confidence            54

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.34  E-value=0.56  Score=40.57  Aligned_cols=139  Identities=14%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHH
Q 010168          269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL  348 (516)
Q Consensus       269 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v  348 (516)
                      +..|.-|+..+.+++++..-+...+-   -...++-+-.||+..+.++|+++   |-+....+..+-...|...++.++.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI---~qnL~i~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWI---GQNLHIYNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHH---hhccCCCCchhhhhhhhhccchhHH
Confidence            34677788999999988876653211   23567788899999999999999   4445555556677888888888762


Q ss_pred             H----HHHHCCCCCCCCCCC--CCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          349 K----RVLSNGVDPSSRDYD--HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       349 ~----~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      .    ++.++...-+..|..  -..-|..|+..|-...+...+++|.+++.      ++|..|+..+|..++.+++.
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            1    222222111111100  01236789999999999999999988753      79999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.12  E-value=0.13  Score=45.63  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             HHHHHHHHcC-CCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          379 LMAKLLLEAG-ASVFT---KDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       379 ~~v~~Ll~~g-~~~~~---~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      .+.++.+.+| +++|.   +-+.|.|-|+-|...++.+++.+|+++||
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3444444444 33332   23345666666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.04  E-value=0.19  Score=44.71  Aligned_cols=112  Identities=17%  Similarity=0.083  Sum_probs=77.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcC----CCCCcCC-cchHH--HHHHHcCC
Q 010168          272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG----ASLNVDD-AGSFL--CTAVARGD  344 (516)
Q Consensus       272 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----~~~~~~~-~~~~l--~~A~~~~~  344 (516)
                      |--|+...+.+-+.-++...       ....+++.+|...+..+++-+|+.+-    .++-.-. +---+  .+.....+
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~  229 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSAS  229 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCc
Confidence            45566666666555554432       23568999999999999999999851    1111100 11112  23344556


Q ss_pred             HHHHHHHHHCC-CCCCCC---CCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          345 SDFLKRVLSNG-VDPSSR---DYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       345 ~~~v~~Ll~~g-~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      ..+++..+.+| +++|.+   -.+|.|-|.-|...++.+++..|+++||-
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            78899999998 566653   46799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=93.21  E-value=0.023  Score=50.87  Aligned_cols=45  Identities=31%  Similarity=0.521  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhh-hhHHHhhccCCHHH
Q 010168           15 ILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDV   72 (516)
Q Consensus        15 ~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~-~f~~d~~~~~P~~~   72 (516)
                      ++|.+.+++|.+|+++++++....             +.+|+++ |.++|+++++|...
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~   46 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIV   46 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCC
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccc
Confidence            589999999999999999977663             6788998 67799999999843

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=92.91  E-value=0.25  Score=50.77  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             HhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccc
Q 010168           84 YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  163 (516)
Q Consensus        84 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~l  163 (516)
                      .|++...|++|-...+..++....+..++...++|+.|+.+...|++++|.|-+.     |.     .+-|-.+||.   
T Consensus        38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----gq-----i~mp~~~fgk---  104 (1283)
T KOG3542|consen   38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----GQ-----IYMPYGCFGK---  104 (1283)
T ss_pred             HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----cc-----eecCcccccc---
Confidence            4677788999999999999999999999999999999999999999999998774     22     2233345553   


Q ss_pred             ccCCCcceEEEEeeeeeEEEeecc
Q 010168          164 LCNIPQPYTVCICELSRLLRIDKQ  187 (516)
Q Consensus       164 l~~~~~~~tv~a~~~~~l~~l~~~  187 (516)
                      -.+..+..++..+++++...++..
T Consensus       105 r~g~~r~~nclllq~semivid~~  128 (1283)
T KOG3542|consen  105 RTGQNRTHNCLLLQESEMIVIDYP  128 (1283)
T ss_pred             ccccccccceeeecccceeeeecC
Confidence            345567888888888888887443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.42  E-value=0.93  Score=33.55  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=7.6

Q ss_pred             HHHHHHcCCHHHHHHHHH
Q 010168          272 LHLATSRGYEDITLFLIQ  289 (516)
Q Consensus       272 Lh~A~~~g~~~~v~~Ll~  289 (516)
                      +..|+...+-+++++|++
T Consensus        36 l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   36 LEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            444444444444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

Probab=85.78  E-value=2.2  Score=31.48  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=42.0

Q ss_pred             ccceEEEcCCcHHHHHHHHhhhcCC--CCCCcccccCCceEEE---EeeeecCCeEEEeecC
Q 010168          459 RHGIVLWVPHNIEELIKLAVDKLDF--PDGHSILSEDGGKILD---VDMINDGQKLYLISET  515 (516)
Q Consensus       459 ~~~~~~~~p~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~i~d---~~~~~~~~~~~~~~~~  515 (516)
                      +..+.-....+++||+.-+.++|+.  ...+-++.+||-+|+|   +..+-|+-.+.++.+.
T Consensus        12 r~~k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l~~g   73 (78)
T cd01615          12 RSRKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLLEPG   73 (78)
T ss_pred             CCeeEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEECCC
Confidence            4445556688999999999999999  4444557888888866   6667777776666554

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.

>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins

Probab=85.61  E-value=2.6  Score=31.15  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             ccceEEEcCCcHHHHHHHHhhhcCCCCCCcc-cccCCceEEE---EeeeecCCeEEEeecC
Q 010168          459 RHGIVLWVPHNIEELIKLAVDKLDFPDGHSI-LSEDGGKILD---VDMINDGQKLYLISET  515 (516)
Q Consensus       459 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~i~d---~~~~~~~~~~~~~~~~  515 (516)
                      +..+.-....+++||+.-+.++|+++...++ +.+||=+++|   +..+-||-+|.++...
T Consensus        12 r~~kkGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~~g   72 (81)
T cd06537          12 RTVRKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLEQG   72 (81)
T ss_pred             CCeeEeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEECCC
Confidence            4455556788999999999999999865655 6666666645   6677788877776654

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.48  E-value=1.6  Score=32.25  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHc
Q 010168          269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE  323 (516)
Q Consensus       269 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  323 (516)
                      ..-+..|+..|+.|+++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34689999999999999999875 222      4689999999999999999996

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=83.22  E-value=4.2  Score=29.13  Aligned_cols=44  Identities=20%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             ceeCCCCeEEecCCccC-eEEEEEeceEEEEEecCCCCeeeEEEecCCCee
Q 010168          109 EFFLPGEVIMEQGNVVD-QLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  158 (516)
Q Consensus       109 ~~~~~ge~i~~~g~~~~-~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~f  158 (516)
                      ..++||+..-..-.+.. .+++|++|.+.+..   +|+   ...+.+|+.+
T Consensus         3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~   47 (71)
T PF07883_consen    3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE---RVELKPGDAI   47 (71)
T ss_dssp             EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred             EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE---EeEccCCEEE
Confidence            46788887666665666 89999999999874   343   4667888753

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins

Probab=81.60  E-value=4.2  Score=29.92  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=41.8

Q ss_pred             ccceEEEcCCcHHHHHHHHhhhcCCCC--CCcccccCCceEEE---EeeeecCCeEEEeecC
Q 010168          459 RHGIVLWVPHNIEELIKLAVDKLDFPD--GHSILSEDGGKILD---VDMINDGQKLYLISET  515 (516)
Q Consensus       459 ~~~~~~~~p~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~i~d---~~~~~~~~~~~~~~~~  515 (516)
                      +..+.-....+++||+.-+.++|+.+.  .+-++.+||=+++|   +..+-||-+|.+..+.
T Consensus        12 r~~k~GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L~~g   73 (78)
T cd06539          12 RSSRRGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVLEKG   73 (78)
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEECCC
Confidence            344455567899999999999999964  34457788878755   6677777777776654

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	516
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-29
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-29
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-28
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-27
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-22
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-19
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-18
1uoh_A	226	Human Gankyrin Length = 226		3e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-16
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-16
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-16
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		8e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-11
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-11
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-11
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-11
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		6e-11
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-11
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-10
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-10
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		9e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		9e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		9e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		5e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/186 (40%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           +EL  R+  AA +G+  ++K LI  GAD N +D DGR+PLH A   G+++I   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N KD  G TPL  A K GH  +  LL+ +GA +N                        
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN------------------------ 97
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  ++D D RTPLH AA EG   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 98  -------AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
           + + G  L  A   G+ D +K ++ NG D ++ D D RTPLH AA EG   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           A V  KD  G TPL      G+K ++KLL
Sbjct: 61  ADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           +EL  R+  AA +G+  ++K L+  GADPN +D DGR+PLH A   G+++I   L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D N KD  G TPL  A + GH  +  LL                               L
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
           S G DP+++D D RTPLH AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
           + + G  L  A   G+ D +K +L NG DP++ D D RTPLH AA  G   + KLLL  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           A    KD  G TPL      G+K ++KLL
Sbjct: 61  ADPNAKDSDGRTPLHYAAENGHKEIVKLL 89

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           +EL  R+  AA +G+  ++K LI  GAD N +D DGR+PLH A   G++++   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N KD  G TPL  A + GH  V  LL+ +GA +N                        
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN------------------------ 97
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  ++D D RTPLH AA  G   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 98  -------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
           + + G  L  A   G+ D +K ++ NG D ++ D D RTPLH AA  G   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           A V  KD  G TPL      G+K ++KLL
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLL 89

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           +EL  R+  AA +G+  ++K L+  GAD N +D DG++PLHLA   G++++   L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D N KD  G TPL  A + GH  V  LL                               L
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
           S G DP+++D D +TPLH+AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
           + + G  L  A   G+ D +K +L NG D ++ D D +TPLH+AA  G   + KLLL  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           A    KD  G TPL      G+K ++KLL
Sbjct: 61  ADPNAKDSDGKTPLHLAAENGHKEVVKLL 89

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           +L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
           +N KDK G TPL  A + GH  +  +L+K GA +N                         
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                 ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     GN+++
Sbjct: 96  ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 414 IKLLEDA 420
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           +L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
           +N KDK G TPL  A + GH  +  +L+K GA +N                         
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                 ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     G++++
Sbjct: 96  ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 414 IKLLEDA 420
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N KDK G TPL  A + GH  +  +L+K GA +N                        
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  ++D D  TPLH+AA EG   + ++LL+AGA V  +D++G T  D     GN++
Sbjct: 108 -------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 327 LNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
           +N  D    + L  A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 385 LEAGA 389
           LEAGA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
           A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLLLEAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 399 NTPLDEGRMCGNKNLIKLLEDA 420
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N TD+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D +G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  ++DY+  TPLH+AA +G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N TD DG +PLHLA S G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  + D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G++PLHLA  +G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  DK G+TPL  A   GH  +  +L+K GA +N  D   F                 
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct: 8   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLS 353
            KD  G +PL  A   G D +   L+ +GA +N V+  G + L  A ++   +    +L 
Sbjct: 68  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
            G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 128 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           L V + AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N
Sbjct: 9   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKR 350
            KD  G +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    
Sbjct: 69  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 125
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGR 406
           +L  G +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 407 M 407
           +
Sbjct: 186 V 186

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N +D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G TPL  A   GH  V  +L+K GA +N +D   F                 
Sbjct: 72  DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                         TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 243 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 356
            +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    +L  G 
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
           +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D                     
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--------------------- 110
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
            NG+          TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 111 DNGI----------TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 243 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AY G L +LK  I A      +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 356
            +PL  A   G D +   L+ +GA +N V+  G   CT    A ++   +    +L  G 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
           +P ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D++  D FG TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  + D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKR 350
           D+N KD  G TPL  A + GH  +  +L+K GA +N  D+  F  L  A  RG  + ++ 
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
           +L NG D +++D   +T   ++   G   +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
           A   G +D    L+  G D+N +D  G TPL  A   GH  +  +L+K GA +N  D+  
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 335 F--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 392
              L  A  RG  + ++ +L NG D ++ D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 393 TKDRWGNTPLDEGRMCGNKNLIKLLE 418
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           +L  ++  AA  G   +++ L+  GAD N  D+ GR+PLH+A + G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
           +N  D  G TPL  A   GH  +  +L+K GA +N  DA                     
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI------------------ 102
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                        TPL++AA  G   + ++LL+ GA V  +D++G T  D     GN++L
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 414 IKLLE 418
            ++L+
Sbjct: 150 AEILQ 154

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 33/187 (17%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA-GSFLCTAVARGDSDFLKRV 351
           D+N  D  G+TPL  A K GH  +  +L+K GA +N DD  GS                 
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS----------------- 114
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
                          TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN+
Sbjct: 115 ---------------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 412 NLIKLLE 418
           +L ++L+
Sbjct: 160 DLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
           +G   +E   ++  AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 62  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 63  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 411 KNLIKLL 417
             + KLL
Sbjct: 123 YEICKLL 129

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
           +G  EA+  L    AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 3   MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 411 KNLIKLL 417
             + KLL
Sbjct: 121 YEICKLL 127

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N +D  G TPL  A   GH  +  +L+K GA +N  DA                    
Sbjct: 72  DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D+ G +PLHL  + G+ +I   L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  DK G TPL  A   GH  +  +L+K GA +N                        
Sbjct: 72  DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                  + DY   TPLH+AA +G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 108 -------AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 33/184 (17%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ LI  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCTAVARGDSDFLKRV 351
           D++  D +G TPL  A   GH  +  +L+K GA +N  D  GS                 
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----------------- 114
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
                          TPLH+AA EG   + ++LL+ GA V  +D++G T  D     GN+
Sbjct: 115 ---------------TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 412 NLIK 415
           +L K
Sbjct: 160 DLAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           D G  L  A   G  D ++ +++NG D ++ D    TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           V   D +G TPL    M G+  ++++L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
           D+N  D  G TPL  A   GH  +  +L+K GA +N +D                     
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM-------------------- 111
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
                      +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 112 -----------EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 300
           AA +  L  +K LI+AGA  +  D +G + LHLA  +G+ ++  +L+  G +D+N +D  
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVDP 358
           G TP++ A +  H  +  LL+ +G+ +N+ D    +C   A   G  D  + +L+   D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
            + +    +PLH+AA E  Y    L L   + V  K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A + GH  +  LL++  A+ N+        L  A   G  + +  +L      +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
           +G  EA+  L    AA  GD+  +K L    +  N  D +GR  +PLH A       +  
Sbjct: 7   LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +L +G D  ++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    G 
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 411 KNLIKLL 417
             + KLL
Sbjct: 125 YEICKLL 131

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           +L  ++  AA  G   +++ L+  GAD N TD +G +PLHLA + G  +I   L++ G D
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
           +N  D  G TPL  A   GH  +  +L+K GA +N  D   +                  
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------------------ 106
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                        TPLH+AA  G   + ++LL+ GA V  +D  G T  D     G ++L
Sbjct: 107 -------------TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 414 IKLLE 418
            ++L+
Sbjct: 154 AEILQ 158

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           +N                               ++D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VN-------------------------------AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 387 AGA 389
           AGA
Sbjct: 90  AGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
           A   G  + +K +L  G D +++D + RTPLH+AA  G   + KLLLEAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 399 NTPLDEGRMCGNKNLIKLLEDA 420
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++RD
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           +++AA +G   ++K L+  GAD N    DG +PLHLA   G+ +I   L+ KG D+N + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
           K GNTP   A K GH  +  LL  +GA +N    GS
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  +  LL+ +GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           +N                               +R  D  TP H+A   G + + KLL  
Sbjct: 68  VN-------------------------------ARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 387 AGASVFTKDRWGNT 400
            GA V  +  WG++
Sbjct: 97  KGADVNARS-WGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           D  + L  A   G ++ +K++LS G D ++R  D  TPLH+AA  G   + KLLL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           V  + + GNTP    +  G+  ++KLL+
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N +DDAG + L  A  RG  + ++ +L +G D ++ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           D+N +D FG TPL  A   GH  +  +L+K GA +N  D
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N   +D  + L  A   G  + ++ +L  G D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
               TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 42  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 429 H 429
           H
Sbjct: 222 H 222

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 75  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 429 H 429
           H
Sbjct: 255 H 255

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
            TPLL A+  GH     LL+ +GA   V        TA+   D+  +K +L
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL--TALEATDNQAIKALL 117

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 320 LVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379
           LV  G+ +   D G  L  A   G  D ++ +++NG D +++D +  TPLH+AA  G   
Sbjct: 13  LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           + KLLLEAGA V  +D++G T  D     GN++L ++L+
Sbjct: 72  VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
           A   G +D    L+  G D+N KD++G TPL  A   GH  +  +L+K GA +N  DA  
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
           F                               TPLH+AA  G   +A++LL+ GA V  +
Sbjct: 81  F-------------------------------TPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 395 DRWGNTPLDEGRMCGNKNLIKLLE 418
           D++G T  D     GN++L ++L+
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   G L  +  L++ GADP+  D +G S +HLA   G+  I  +LI KG D+++ D+ G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 302 NTPLLEAIKCGHD-GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
            TPL+ A    H    T LL+    S+N+ D                             
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK---------------------------- 174
Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
             Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  L++A
Sbjct: 175 --YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 421 E 421
Sbjct: 233 R 233

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           D G  L  A   G  D ++ +++NG D +++D D  TPLH+AA EG   + ++LL+AGA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           V  +D++G T  D     GN++L ++L+ A
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           D G  L  A   G  D ++ +++NG D +++D +  TPLH+AA  G   + KLLLEAGA 
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           V  +D++G T  D     GN++L ++L+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
            TPLL A+  GH     LL+ +GA   V   G    TA    D+  +K +L
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTV--KGPDGLTAFEATDNQAIKALL 122

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 310
           K L+ A AD    D  GR+PLH A S   + +  + L  +  D++ +   G TPL+ A +
Sbjct: 39  KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
              +G+   L+   A +N VDD G S L  A A  + D    +L NG +   ++    TP
Sbjct: 99  LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           +L  ++  AA  G   +++ L+  GA P  TD+ G SPLHLA   G+   T  L++ GV 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
            + + K   TPL  A   GH  +  +L+K GA +N                         
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN------------------------- 94
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                 ++D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L
Sbjct: 95  ------AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 414 IKLLE 418
            ++L+
Sbjct: 149 AEILQ 153

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA    + +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N +D    + L  A      + ++ +L +G D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
            D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L   GAD N  DY G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           D+N     G TPL  A    H  +  +L+K GA +N  D
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L   GA +N +D    + L  A   G  + ++ +L NG D ++  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
              RTPLH+AA      + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 288
           G   A+ A+ ++ A   G    +K L+ + A PNK D  G +PL  A S G+ ++   L+
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 289 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           Q G  IN  +  GNT L EA+   H  V  LL+  GAS+ V
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA HG    +  L++ GA+    + D   PLHLA  +G+  +   L+      N KD  G
Sbjct: 93  AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           NTPL+ A   GH  + +LL++ GAS+N  +          +G+                 
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINASN---------NKGN----------------- 186
Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
                T LH A  E    + +LLL  GASV   ++   T +D      N  +++LL+
Sbjct: 187 -----TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 324 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
           G ++   D  S L  A   G +D +  +L +G +  +R+ D   PLH+A  +G + + K 
Sbjct: 78  GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           LL++ A    KD  GNTPL      G+  L+ LL
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           +L V+  A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 20  SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 353
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 80  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 354 NGVDPS 359
           +G DP+
Sbjct: 140 SGADPT 145

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 412 NLIKLLE 418
           ++ +++E
Sbjct: 165 SVQQVIE 171

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
           L+ AGAD N  D  GR+PLH A +     +  + L  +  ++N +   G TPL+ A +  
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 313 HDGVTSLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 370
            +G+   L+   A +N  D++G + L  A A  +++ +  +L +  +  ++D    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 371 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           +AA EG Y  +K LL+  A+    D     P D      + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           +L V+  A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 2   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 353
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 62  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 354 NGVDPS 359
           +G DP+
Sbjct: 122 SGADPT 127

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 412 NLIKLLE 418
           ++ +++E
Sbjct: 147 SVQQVIE 153

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA HG +  ++ L++ GADP        S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCTAVARG 343
            TPLL A+   H     +L++ GA  ++  D   + +  AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L  A ++G +D +K +
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
           L  GVD +  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 412 NLIKLLE 418
           ++ +++E
Sbjct: 149 SVQQVIE 155

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 234 ELALRVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           E AL    A+ H    Q+  L+ R GA+ N+ + D  +PLH+A  R + D+   L + G 
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
            +N  D  G T L  A   GH     LL+  G+  ++     F  TA   G+ + ++++L
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF--TAAQMGN-EAVQQIL 328
Query: 353 SNGVDPSSRDYDHR 366
           S      + D D+R
Sbjct: 329 SESTPMRTSDVDYR 342

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 238 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           R++ AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N+
Sbjct: 11  RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 69
Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
           +D  G +P+ +A + G      +LV+ GA +NV D    L                    
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 109
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
                      P+H+A  EG +      L A + +  +D  G TPL+     G ++L+ +
Sbjct: 110 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 157
Query: 417 LE 418
           L+
Sbjct: 158 LQ 159

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 197 FCDGRKVLTNLLEG-KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLI 255
           F DG   L     G  E  LRL +  +DI +       +    ++ A    ++  +K L+
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLV 93
Query: 256 RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL---------- 305
             GA+ N+ D +G  PLH A S GY DI  +LI +G  +   +  G+TPL          
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 306 LEAIKCGHDGVT-SLLVKEGASLNVDDA------------------GSFLCTAVARGDSD 346
           L   +    GV      KE   + + DA                  G+ L  A A+G ++
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
            LK ++    D + +DYD  TPLH AA  G     ++L+E    +   ++ G T  D
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 357
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
              +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 418 ED 419
            D
Sbjct: 186 MD 187

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
           N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+K    G+   L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 322 KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379
            +G+++N  D    + L  ++  G S+    +L +G + + R+ +  TPL VA+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           + K LLE GA +  +D  G T     R+ G + +IK+  +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 216 RLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA 275
           ++K++  D T+ + + + E    +N A ++ D+   K LI  GAD N  +    SP   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 276 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
            ++G  +I  ++++    D+N  +++G   L+ A + GH     LL+++G   ++D    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 335 FLCTAV------ARGDS---DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
           F  TA+        G+    D +K ++ NG D S +D   RT +  A  +G   ++K+L 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 386 E 386
           +
Sbjct: 199 Q 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
           ++ D +G +PL++A      +I   LI +G DIN+++   ++P L A   G   + + ++
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 322 KEGA-SLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS--SRDYDHRTPLH-VAASE 375
           K     LN  +   G+ L  A  +G  D +K +L +G +      D+ +   +  V   E
Sbjct: 93  KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Query: 376 GLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           G  L   + KLL+E GA    KD  G T +D     G   + K+L
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 238 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           R++ AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N+
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
           +D  G +P+ +A + G      +LV+ GA +NV D    L                    
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 103
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
                      P+H+A  EG +      L A + +  +D  G TPL+     G ++L+ +
Sbjct: 104 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 417 LE 418
           L+
Sbjct: 152 LQ 153

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A+  G++  ++ L+  GADP+    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCTAVARG 343
            TPLL A++  H      L+  GA L  + D+G + +  AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 32/185 (17%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           +L ++  A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           +I                       L KE  S         L  A   G +D +  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
            VD +  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 415 KLLED 419
           +++E+
Sbjct: 152 QVIEN 156

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
           ++L  ++  AA  G   +++ L+  GAD N  D  G +PLHLA    + +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           D+N  D  G TPL      GH  +  +L+K GA +N  D
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD 362
           LLEA + G D    +L+  GA +N +D      L  A      + ++ +L NG D ++ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
               TPLH+ A  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
             V S L  E + L+  DA       +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 275 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 333
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 334 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             S +  A   G  D LK ++ +G D ++ D     P+H+A  EG   +   L    + +
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLE 418
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
             V S L  E + L+  DA       +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 275 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 333
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 334 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             S +  A   G  D LK ++ +G D ++ D     P+H+A  EG   +   L    + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLE 418
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           +L ++  A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVL 352
           +I  K   + L  A   G+  +  LL++    +N+ D   G+ L  AV       ++ +L
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 353 SNGVDPSSRDYDHRTPLHVAASEG 376
           + G D ++      TP+ +A + G
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALG 146

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G DP  T++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 318 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 377
            LL++  A +N                               +  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKALVN-------------------------------TTGYQNDSPLHDAAKNGH 88
Query: 378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 426
             + KLLL  GAS    + +G  P+D       K+L+ L E  E +  S
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 263 KTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           + D DG +PLH+A  +G     +  + LF  Q G +++I +    TPL  A+      V 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 318 SLLVKEGAS-LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS-----RDYDHRTPLHV 371
            LLV  GAS + +D  G           S    R L +   P +     R+YD  T LHV
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 372 AASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLL 417
           A +       +LLLE GA +   D + G +PL       + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 357
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
              +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 418 ED 419
            D
Sbjct: 242 MD 243

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 206 NLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD 265
           +L  GK +NLR K     I   +      LAL ++S+   G+   ++ +I    DP+  +
Sbjct: 10  SLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPN 67
Query: 266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
            +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ GA
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 326 SL 327
           ++
Sbjct: 128 AV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 326 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
           SL  D+  + L  AV  G ++ +K ++  GV+ ++ D D  TPLH AAS     + K L+
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 386 EAGASVFT 393
           E+GA+VF 
Sbjct: 124 ESGAAVFA 131

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 340
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L  A 
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
           + G  D ++++L    D ++ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 81  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 401 PLDEGR 406
           P+D+ +
Sbjct: 141 PVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 340
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L  A 
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
           + G  D ++++L    D ++ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 76  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 401 PLDEGR 406
           P+D+ +
Sbjct: 136 PVDKAK 141

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 206 NLLEGKESNLRLKQLKSDITFH---IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPN 262
           +L  GK +NLR  +  S+   H   +  +   LAL ++S+   G+   ++ +I    DP+
Sbjct: 8   SLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPS 64
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
             + +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 323 EGASL 327
            GA++
Sbjct: 125 SGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 326 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
           SL  D+  + L  AV  G ++ +K ++  GV+ ++ D D  TPLH AAS     + K L+
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 386 EAGASVFT 393
           E+GA+VF 
Sbjct: 124 ESGAAVFA 131

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+R GADP     +G +P  LA   G   +    + KG D+N  D +G T  +EA   G 
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 314 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 360
                 L K GA++N+                + L  A  +G  + LK +L   G D ++
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 361 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 402
            D   R  L H   S     +  +  LLL+ GA V  +   G TPL
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
           + D DGR PLH + S    +IT FL+ K  ++N+    D  G TP   A   G+  V   
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
           L        LN        C  +A G   F   + ++ NG     +D  ++ PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
           FG T L + +K G+  +   L+  GA+ ++ D   F  +  A   G  D L+ +L N  D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
            +  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
           ++
Sbjct: 156 MQ 157

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+R GADP     +G +P  LA   G   +    + KG D+N  D +G T  +EA   G 
Sbjct: 78  LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Query: 314 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 360
                 L K GA++N+                + L  A  +G  + LK +L   G D ++
Sbjct: 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 361 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 402
            D   R  L H   S     +  +  LLL+ GA V  +   G TPL
Sbjct: 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           SAA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           GN  + +A + G                      FL         D L+ +L    D + 
Sbjct: 70  GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
           FG T L + +K G+  +   L+  GA+ ++ D   F  +  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
            +  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
           ++
Sbjct: 156 MQ 157

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
           FG T L + +K G+  +   L+  GA+ ++ D   F  +  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
            +  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
           ++
Sbjct: 156 MQ 157

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGD 344
           L  +  D++ +   G TPL+ A +   +G+   L+   A +N VDD G S L  A A  +
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 404
            D    +L NG +   ++    TPL +AA EG Y  AK+LL+  A+    D     P D 
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 405 GRMCGNKNLIKLLED 419
            +   + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G  D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
             V   LVK  AS
Sbjct: 116 LRVVEFLVKHTAS 128

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
           FG T L + +K G+  +   L+  GA+ ++ D   F  +  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
            +  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
           ++
Sbjct: 156 MQ 157

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
           AL   ++ +   L  +   +  GAD N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
           +N  D  G  PL  A   GH G+  L +K GA L   D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL-LEAI 309
           L +AGADP   +   RS LH A +    G     L   +   DI   D+ G T L + A 
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAH 244
Query: 310 KCGHDGVTS--LLVKEGASLNVDDAG----------SFLCTAVARGDSDFLKRVL-SNGV 356
             G D V S  LLV++GA ++ D A           + L  A    +   +K ++   G 
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGS 304
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
           +   +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N++ +
Sbjct: 305 NKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 417 LE 418
            +
Sbjct: 365 FD 366

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 300
           A  HG +  +K L+   AD N  D DG + L  A   G+++I  L L     DI++ D+ 
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 301 GNTPLLEAIKCGHDGVTSLL 320
           G+T L+ A+  G   + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G+L  ++  ++   DP++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASL 327
            TPL  A  C    +   LV+ GA++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           L  A +RG  +    L++ G D N  ++FG  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             +             L R                 P+H AA EG      +L  AGA +
Sbjct: 75  PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
              D WG  P+D     G++++ + L  A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 217 LKQLKSDITF-----HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
           ++Q+K D+ F     ++ +    LA+  N           + L+ AG DP   D+ G +P
Sbjct: 25  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI------AEALLGAGCDPELRDFRGNTP 78
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKF------GNTPLLEAIKCGHDGVTSLLVKEGA 325
           LHLA  +G       L Q     ++          G+T L  A   G+ G+  LLV  GA
Sbjct: 79  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 138
Query: 326 SLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
            +N  +     + L  AV   + D +  +L  G D +   Y   +P
Sbjct: 139 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           L  A +RG  +    L++ G + N  + +G  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             +             L R                 P+H AA EG      +L  AGA +
Sbjct: 75  PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
             +D WG  P+D     G++++ + L  A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 217 LKQLKSDITF-----HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
           ++Q+K D+ F     ++ +    LA+  N           + L+ AG DP   D+ G +P
Sbjct: 28  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI------AEALLGAGCDPELRDFRGNTP 81
Query: 272 LHLATSRGYEDITLFLIQKGVD------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
           LHLA  +G       L Q          +   +  G+T L  A   G+ G+  LLV  GA
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
Query: 326 SLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
            +N  +     + L  AV   + D +  +L  G D +   Y   +P
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	516
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-39
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-39
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-36
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-35
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	1e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	5e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-23
2rfa_A	232	Transient receptor potential cation channel subfa	4e-32
2rfa_A	232	Transient receptor potential cation channel subfa	1e-28
2rfa_A	232	Transient receptor potential cation channel subfa	3e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-31
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-12
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	1e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-26
2pnn_A	273	Transient receptor potential cation channel subfa	5e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	7e-10
2etb_A	256	Transient receptor potential cation channel subfam	2e-25
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	2e-23
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-06
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	2e-22
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	6e-19
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	7e-19
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	7e-19
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-15
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	3e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-08
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	5e-18
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	7e-18
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	1e-17
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	2e-17
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-17
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-16
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	3e-17
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	3e-15
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	5e-17
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	2e-13
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	4e-16
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	7e-16
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-13
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	1e-15
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	1e-15
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	5e-15
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	1e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-13
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	4e-14
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	4e-14
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	5e-14
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	6e-14
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	1e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-12
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	2e-13
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	7e-13
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	4e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-08
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	4e-12
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	5e-12
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	1e-11
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	5e-11
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	5e-10
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	6e-10
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	2e-09
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	6e-09
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	6e-09
1ft9_A	222	Carbon monoxide oxidation system transcription reg	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	1e-07
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	2e-07
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-06
3b02_A	195	Transcriptional regulator, CRP family; structural	7e-06
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	1e-05
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	7e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (415), Expect = 4e-45
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA    +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL    + GH  V  +L+K G  ++      +  L  A   G+   +K +L +  D +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           ++     +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (410), Expect = 1e-44
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A + GH  +  LL++  A+ N+        L  A   G  + +  +L      +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (407), Expect = 4e-44
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A +H +L  +K L+  G  P+   ++G +PLH+A  +   ++   L+Q G   N +   G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A + GH  + +LL+ + A+ N+ +      L      G       ++ +GV   
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +      TPLHVA+  G   + K LL+  A V  K + G +PL +    G+ +++ LL
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  158 bits (403), Expect = 2e-43
 Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 2/178 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G +   + L+   A PN    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A K     V   L++ G S N +       L  A   G ++ +  +LS   + +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (391), Expect = 9e-42
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A+   +  +  LL+  G S +      +  L  A  +   +  + +L  G   +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (381), Expect = 2e-40
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 2/162 (1%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G         G +PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 318 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 375
             L++  A +N         L  A   G ++ +K +L N  +P+       TPLH+AA E
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 376 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           G       LLE  AS     + G TPL      G   + +LL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (365), Expect = 3e-38
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 5/167 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G    +  L+   A+ N  +  G +PLHL    G+  +   LI+ GV ++   + G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A   G+  +   L++  A +N     G   L  A  +G +D +  +L NG  P+
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNTPLD 403
               D  TPL +A   G   +  +L    +  + V   D+   +  +
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (272), Expect = 1e-25
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDF 347
            G+      + G TPL  A   GH  +   L++ GAS NV +      L  A   G ++ 
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 407
            K +L N    +++  D +TPLH AA  G   M KLLLE  A+       G+TPL     
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 408 CGNKNLIKLL 417
            G+   +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.4 bits (158), Expect = 3e-11
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
           S G+          TPLHVA+  G   + K LL+ GAS    +    TPL      G+  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 413 LIKLL 417
           + K L
Sbjct: 62  VAKYL 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  158 bits (403), Expect = 5e-45
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA HG    L+ LI  G   N    D  SPLH A   G+      L++ G  +N      
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVLSNGVDPSS 360
           +TPL  A   G     +LL++ GAS+  +   +  +  A  RG  + +  +++ G +   
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (331), Expect = 8e-35
 Identities = 47/209 (22%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD-------------------------------YDGRS 270
            + H   +   GL+  G+     D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 330
           P+H A   G++     LI +G  +NI      +PL EA   GH     +L+K GA +N  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 331 DAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
            A     L  A   G  D +  +L +G        D  +P+H AA  G       L+  G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            ++  K     TPL        +  +K L
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (331), Expect = 9e-35
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 3/151 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   G    +  L++ GA       D  SP+H A  RG+ +    LI  G +I+ K    
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSS 360
            TPL  A +         L++ GA +N      S L   V     +    ++  G D  +
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
           ++ + + P+ +   E   L    L   GAS+
Sbjct: 251 KNAEGKRPVELVPPES-PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 98.7 bits (247), Expect = 3e-23
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 10/149 (6%)

Query: 274 LATSRGYEDITLFLIQKGVDINIKDKF-----GNTPLLEAIKCGHDGVTSLLVKEGASLN 328
           + +S  +   +  L+ +G  +   D       G+ P       G       L+      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
                S +  A   G    L+ ++S G   +    DH +PLH A   G     K+LL+ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           A V       +TPL    + G+ + + LL
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 90.2 bits (225), Expect = 2e-20
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +     +K L+ +GAD N+      SPLH       E++   L+  G D   K+  G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN 328
             P+              L +EGASL 
Sbjct: 256 KRPVELVPPESPL-AQLFLEREGASLP 281

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  149 bits (378), Expect = 8e-43
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 242 AAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            A  G+L QLK  +R G +  NK D  G +PL  A++ G  +   FL++ G D +I  K 
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
             + L  A   G+  +  LL++    +N+ D      L  AV       ++ +L+ G D 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 401
           ++      TP+ +A + G   + +++      +F  +     P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  123 bits (311), Expect = 3e-33
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 268 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
               +H   ++G  D     ++KG + +N  D+ G TPL+ A   G       L++ GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 327 LNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
            ++        L  A   G +D +  +L   VD +  D++  TPL  A         + L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           L  GA + T+   G TP+D     G + + +++E+ 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  144 bits (366), Expect = 3e-40
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 5/180 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G +     L++AGA+ +    D R+PL  A    + +   +LI+ G  ++ KD  G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----AVARGDSDFLKRVLSNGVD 357
           +T L  A K GH  V   L+  G   +V+       T    A      D +K +LS G D
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            + RD +    LH AA  G   +A++LL A   +   +  G++PL         + + L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  133 bits (338), Expect = 3e-36
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 318
            +      + RSPLH A   G+ DI   L+Q G +I+   +   TPL+EA +  H     
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 319 LLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASE 375
            L+K GA ++  DA     L  A  +G  + ++ +LSNG +D + +D    TP+  A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 376 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
               + KLLL  G+ +  +D   N  L      G  ++ ++L
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (327), Expect = 9e-35
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 32/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           AA  G    ++ L+  G  D N  D  G +P+  AT   + D+   L+ KG DINI+D  
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
            N  L  A   G   +  +L                               L+   D  +
Sbjct: 144 ENICLHWAAFSGCVDIAEIL-------------------------------LAAKCDLHA 172

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            +    +PLH+AA E  Y    L L   + V  K++ G TPL    +         +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (277), Expect = 9e-28
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +  +  +K L+  G+D N  D +    LH A   G  DI   L+    D++  +  G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           ++PL  A +        L                                LS   D + +
Sbjct: 178 DSPLHIAARENRYDCVVLF-------------------------------LSRDSDVTLK 206

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           + +  TPL  A+       A  + +A  
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  144 bits (365), Expect = 5e-40
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-F 300
           A  +G   + + L+ AG D  + D +  + LH A      D+  + I KG  ++      
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
            +TPL  A + GH  +   L+K GA  ++ D      +  A   G +  +  +++ G D 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 359 SSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 416
              D +  TPL  AA     +   +LLL    SV   D++  NT L    + GN  +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 417 L 417
           L
Sbjct: 196 L 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  138 bits (351), Expect = 4e-38
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   G L  +  L++ GADP+  D +G S +HLA   G+  I  +LI KG D+++ D+ G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 302 NTPLLEAIKCGHDG-VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
            TPL+ A    H    T LL+    S+N+ D                             
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----------------------------- 173

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
             Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  L++A
Sbjct: 174 -KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 421 E 421
            
Sbjct: 233 R 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (327), Expect = 1e-34
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 3/144 (2%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
              D      +  AT  G  +    L++ G D+   DK   T L  A       +    +
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 322 KEGASLNV--DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 378
            +GA ++    D  S  L  A  +G    + +++  G DPS  D +  + +H+AA  G  
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 379 LMAKLLLEAGASVFTKDRWGNTPL 402
            +   L+  G  V   D+ G TPL
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRV 351
           +   D +    +++A + G       LV+ G  +   D  +   L  A      D +K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 352 LSNGVDPSSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           +S G        D   TPLH A  +G   M   L++ GA     D  G + +      G+
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 411 KNLIKLL 417
            +++  L
Sbjct: 122 TSIVAYL 128

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (359), Expect = 1e-39
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A         + L       ++ D +G +PL++A      +I   LI +G DIN+++   
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNG-V 356
           ++P L A   G   + + ++K     +++    +    L  A  +G  D +K +L +G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 357 DPSSRDYDHRTPLHVAASEGLYL-----MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
           D   ++    T L  A            + KLL+E GA    KD  G T +D     G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 412 NLIKLL 417
            + K+L
Sbjct: 192 EISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 4e-32
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 324
            Y+  + L  A  R  + +   L      ++  D  GNTPL  A+      +   L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 325 ASLNVDDAGSF--LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMA 381
           A +N+ ++ S      A A+G ++ L  +L +   D +  +      L  AA +G     
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 382 KLLLEAG-ASVFTKDRWGNTPL 402
           KLLLE G   +  ++ +G T L
Sbjct: 123 KLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 97.1 bits (243), Expect = 1e-23
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 38/152 (25%)

Query: 242 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDK 299
           A   G    L  +++    D NK +  G + L  A  +G+ D    L++ G  DI+ ++ 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 300 FGNTPLLEAIKC-----GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
           FG T L+EA+        +  +  LL                               + N
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLL-------------------------------MEN 167

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           G D S +D   RT +  A  +G   ++K+L +
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 83.3 bits (207), Expect = 1e-18
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLS 353
           +K       L  A +     V  +L      ++  D      L  AV   D +  K ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 412
            G D + ++    +P   A ++G   +   +L+     +   +R+G   L      G+ +
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 413 LIKLL 417
            +KLL
Sbjct: 121 NVKLL 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (355), Expect = 1e-39
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
            A  G++  L   I      N TD +G +PL  A + G   +  FL+Q G D  +  K  
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            + L  A   G+  +  +L+  G  +N  D      L  AV       +K +L +G DP+
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 396
                    + +A + G   + +++      +    +
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  130 bits (330), Expect = 6e-36
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
                +H   ++G        I++   IN  D+ G TPL+ A   G   V   L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 327 LNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
             +   G    L  A ++G +D +K +L  GVD +  D++  TPL  A         K+L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           LE+GA    +   G   +D     G +++ +++E  
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  143 bits (363), Expect = 3e-39
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A    ++  +K L+  GA+ N+ D +G  PLH A S GY DI  +LI +G  +   +  G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           +TPL  A +   + +    V     ++++ A             D  + + S  ++    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQG-VDIEAA---RKEEERIMLRDARQWLNSGHINDVRH 195

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                T LHVAA++G   + KLL++A   V  KD  G TPL      G +   ++L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  134 bits (341), Expect = 5e-36
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 8/178 (4%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   GD  ++  L+  GAD N  + DG + LH A      D+  FL++ G +IN  D  G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
             PL  A  CG+  +   L+ +GA +   ++     L  A      + L+  ++      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ---- 162

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
               D            L    + L     +     + G T L      G   ++KLL
Sbjct: 163 --GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (309), Expect = 1e-31
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
             + G    L+  +           DG      A S G  +  L L+++G DIN  +  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            T L +A    +  +   LV+ GA++N                                 
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANIN-------------------------------QP 102

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD       + L++  
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 1e-27
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 224 ITFHIGKHEAEL--ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 281
           +   + +   ++  A +        D  Q   L     +  +    G + LH+A ++GY 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVA 341
           ++   LIQ   D+NIKD  G TPL  A   G +    +L                     
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--------------------- 251

Query: 342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
                     + N  D  + +   +T   VA  + L  + +L  +       K 
Sbjct: 252 ----------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (276), Expect = 5e-27
 Identities = 33/180 (18%), Positives = 52/180 (28%), Gaps = 37/180 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A        L+  +      N+   D  +           D   +L    ++     K G
Sbjct: 146 AEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            T L  A   G+  V  LL                               +    D + +
Sbjct: 200 GTALHVAAAKGYTEVLKLL-------------------------------IQARYDVNIK 228

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
           DYD  TPLH AA  G     ++L+E    +   ++ G T  D         L +L +   
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  101 bits (255), Expect = 3e-24
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCTAVARGDSDFLKRVL 352
           + + D             G +      V +     V  D G+    A + GD++ + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
             G D +  + D  T LH A  +    M K L+E GA++   D  G  PL     CG  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 413 LIKLL 417
           + + L
Sbjct: 121 IAEYL 125

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  141 bits (358), Expect = 5e-39
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 242 AAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           A   G+L      +    + G + +  +   ++PLHLA       +   L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSF-----LCTAVARGDSDFLKRV 351
           D+ G T    A +         L+   A   +D +A ++     L  AV     + ++ +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 352 LSNGVDPSSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           L  G D  + D    R+PL  A       M +LLL+ GA+V  +   G++ L      G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 411 KNLIKLL 417
             L++ L
Sbjct: 196 LPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (323), Expect = 4e-34
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 36/181 (19%)

Query: 242 AAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           A  H     L+ L+ + A    D    +YDG + LH+A +   ++    L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 298 D-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
           D K G +PL+ A++     +  LL++ GA++N                            
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVN---------------------------- 177

Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
              ++ Y   + LH A+  GL  + + L+ +GA    K+   +TPL   R     ++++ 
Sbjct: 178 ---AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 417 L 417
            
Sbjct: 235 K 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  123 bits (312), Expect = 1e-32
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
            + D DG +PLH+A  +G       L+    Q G +++I +    TPL  A+      V 
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 318 SLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNG----VDPSSRDYDHRTPLHV 371
            LLV  GAS    D  G +    A        L+ +L +     +D  +R+YD  T LHV
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 372 AASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLL 417
           A +       +LLLE GA +   D   G +PL       + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  108 bits (273), Expect = 3e-27
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 32/150 (21%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A        ++ L+  GAD +  D   GRSPL  A       +   L+Q G ++N +   
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G++ L  A   G   +   L                               + +G D S 
Sbjct: 183 GSSALHSASGRGLLPLVRTL-------------------------------VRSGADSSL 211

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           ++  + TPL VA S  +  + +      AS
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.5 bits (205), Expect = 5e-18
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLV----KEGASLNVDDAGSF--LCTAVARGDSDF 347
               D+ G+TPL  A+  G+      LV    + G  L++ +      L  AV       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT----KDRWGNTPLD 403
           ++ +++ G  P + D   +T  H+A         + LL++ A        ++  G T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 404 EGRMCGNKNLIKLL 417
                  +  ++LL
Sbjct: 122 VAVNTECQETVQLL 135

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  142 bits (360), Expect = 5e-39
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 20/196 (10%)

Query: 242 AAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           A  H     L  L+   A     +  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----------------LCTAVAR 342
           + G+T L  A +        +L++   S   D + ++                   +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTP 401
            +++   R     +   + +YD  TPLHVA       M +LL +AGA +   +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 402 LDEGRMCGNKNLIKLL 417
           L         ++++LL
Sbjct: 196 LHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (324), Expect = 8e-34
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 37/194 (19%)

Query: 211 KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRS 270
           ++++        D T       A +      +  + +  +              +YDG +
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVD-----SQPNPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 271 PLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           PLH+A      ++   L   G D+N  +   G TPL  A++     V  LL         
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL--------- 211

Query: 330 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389
                                 L  G DP++R Y  RTPL  A      ++A+LL   GA
Sbjct: 212 ----------------------LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 390 SVFTKDRWGNTPLD 403
                     +P  
Sbjct: 250 PEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (263), Expect = 2e-25
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A  H D   ++ L  AGAD NK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G TPL  A+   +  +  LL                                ++G     
Sbjct: 225 GRTPLGSALLRPNPILARLL-------------------------------RAHGAPEPE 253

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLE 386
              D  +P   + S+          E
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (253), Expect = 4e-24
 Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 34/163 (20%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVTS 318
                DG + LHLA    +E    FL+        +++++  G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 319 LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 378
            L                                + G      +    T LH+A     +
Sbjct: 63  KL-------------------------------YAAGAGVLVAERGGHTALHLACRVRAH 91

Query: 379 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
             A +LL+   S             +       +    ++   
Sbjct: 92  TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  140 bits (355), Expect = 7e-39
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 242 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            AY G L +L + ++   +   +TD D R+ LH A S G+ +I  FL+Q GV +N KD  
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
           G +PL  A   G D +   L+ +GA +N  +      L  A ++   +    +L  G +P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL            K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  130 bits (328), Expect = 5e-35
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   G    ++ L++ G   N  D  G SPLH+A S G ++I   L+ KG  +N  ++ G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A       +  +L++ GA+ +  D      +  A A+G+   +  +L      +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            +D +  TPLH+A  E     AK L+  GAS++ +++   TPL   +  G   LI   
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  116 bits (292), Expect = 5e-30
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
                 +LA S   +++   ++         D+   T L  A   GH  +   L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 327 LNV-DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
           +N  DDAG S L  A + G  + +K +L  G   ++ + +  TPLH AAS+  + +A +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           LE GA+   KD +  T +      GN  ++ +L
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  108 bits (270), Expect = 5e-27
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G    +K L+  GA  N  + +G +PLH A S+   +I + L++ G + + KD + 
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            T +  A   G+  +  +L+   AS N+ D      L  A      +  K +++ G    
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             + + +TPL VA   G   +    L  G   
Sbjct: 200 IENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 30/120 (25%), Positives = 53/120 (44%)

Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ AA          L+  GA+P+  D+   + +H A ++G   +   L+      NI+D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDP 358
             GNTPL  A           LV +GAS+ +++        VA+G    + + L+ G + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           ++ AA  G+L  +  L+   A  N  D +G +PLHLA      +   FL+ +G  I I++
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           K   TPL  A   G  G+    + EG   ++
Sbjct: 203 KEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  141 bits (358), Expect = 1e-38
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A        ++ L+R GADP     +G +P  LA   G   +    + KG D+N  D +G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF------------LCTAVARGDSDFLK 349
            T  +EA   G       L K GA++N+                  L  A  +G  + LK
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 350 RVLSN-GVDPSSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDE 404
            +L   G D ++ D   R  L  A        +  +  LLL+ GA V  +   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 405 GRMCGNKNLIKLL 417
                +  L++ L
Sbjct: 226 AVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (271), Expect = 2e-26
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 32/154 (20%)

Query: 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKE 323
             +    L  A      D+   L++ G ++N +++  G TPL  A++   + +  LL   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL--- 58

Query: 324 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
                                       L +G DP  R  +  TP  +AA  G   + KL
Sbjct: 59  ----------------------------LRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            L  GA V   D +G T   E  + G    +K L
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 7e-26
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 37/160 (23%)

Query: 242 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINI 296
           AA  G +  LK L+   GAD N  D  GR+ L  A         E IT  L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 297 KDKFGNTPLLEAIKCGHDGVTS-LLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
           + + G TPL+ A++  H G+   LL +E   +N                           
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------------------------- 247

Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
                 D D +T L +A    L  +A+LL + GAS    D
Sbjct: 248 ----DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  142 bits (361), Expect = 3e-38
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 23/181 (12%)

Query: 242 AAYHGDLYQLKGLI-----RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           A    +   L  ++     ++    +  +  G S LH A    +ED+ +  ++ G+D+N+
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
           +D     PL  +++     +T  L+++     +                        NG 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP------------------YHNGT 281

Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
                       +  AA      + +LL E    V      G     + +      + ++
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 417 L 417
            
Sbjct: 342 K 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (308), Expect = 6e-31
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 35/193 (18%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
                 +  K+D +    +H+A  +G  D    LI+ GV   I+++FG T L  A K G 
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
                 L   G   ++      +  AV    +D +  ++    +        + P  +  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 374 SEGLYLMAKL-----------------------------LLEAGASVFTKDRWGNTPLDE 404
                 + ++                             L++ GAS   KD+   TPL  
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 405 GRMCGNKNLIKLL 417
                N+  + L+
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (308), Expect = 7e-31
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 22/183 (12%)

Query: 257 AGADPNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314
                +     G++ LH     G  Y ++   L+Q G     KDK   TPL+ A++  + 
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 315 GVTSLLV-----KEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 367
               L++     K    L+  +  G+  L  A+     D   R +  G+D +  D +H  
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246

Query: 368 PLHVAASEGLYLMAKLLLEAGAS-------------VFTKDRWGNTPLDEGRMCGNKNLI 414
           PL+++    + L+ K LL+                 V          +        + ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 415 KLL 417
           +LL
Sbjct: 307 QLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.6 bits (218), Expect = 6e-19
 Identities = 8/74 (10%), Positives = 20/74 (27%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G             +  A     +++   L +K  ++      G    ++  K     V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 318 SLLVKEGASLNVDD 331
            + +   A +    
Sbjct: 340 RMKLAPSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.4 bits (189), Expect = 3e-15
 Identities = 5/64 (7%), Positives = 15/64 (23%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA       L+ L     +  ++   G         +    +    +     +  + +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 302 NTPL 305
               
Sbjct: 357 ARSS 360

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  135 bits (342), Expect = 5e-38
 Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G DP   ++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 318 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 377
            LL++  A +N                                  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKALVNT-------------------------------TGYQNDSPLHDAAKNGH 88

Query: 378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
             + KLLL  GAS    + +G  P+D       K+L+ L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  116 bits (294), Expect = 3e-31
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 31/149 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A+  GD+  ++ L++ G+DPN  D+ G +PLH A + G+  +   L+Q    +N      
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           ++PL +A K GH  +  LL                               LS G   ++ 
Sbjct: 77  DSPLHDAAKNGHVDIVKLL-------------------------------LSYGASRNAV 105

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           +     P+     E +  +  L  +  +S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  136 bits (346), Expect = 1e-37
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 254 LIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
            I  GA   N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 313 HDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
             GV  +L++  A+ ++D         L  A        L+ ++++  D ++ D   ++ 
Sbjct: 70  AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  126 bits (319), Expect = 8e-34
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A         + LIR  A D +   +DG +PL LA     E +   LI    D+N  D  
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G + L  A    +     +L                               L NG +   
Sbjct: 125 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 153

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  113 bits (286), Expect = 4e-29
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 31/154 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA       L+ LI + AD N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A + G      +L                               L +  +    
Sbjct: 159 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 187

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
           D+  R P  +A     + + +LL E       + 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.6 bits (239), Expect = 1e-22
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 279 GYEDITLFLIQKGVDI-NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-- 335
               +    I +G  + N  D+ G T L  A +         L++  A  N+ D      
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 336 LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
           L  AV+       + ++ N   D  +R +D  TPL +AA   +  M + L+ + A V   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 395 DRWGNTPLDEGRMCGNKNLIKLL 417
           D  G + L       N +   +L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 89.8 bits (224), Expect = 9e-21
 Identities = 19/92 (20%), Positives = 35/92 (38%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 333
             P   A +  H  +  LL +     +    G
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  134 bits (341), Expect = 2e-37
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
               G+   ++  +     D N+ D  G SPLH A   G   +   LI +G  IN+ ++ 
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
            +TPL  A   GH  +   L                               L    D ++
Sbjct: 72  DDTPLHLAASHGHRDIVQKL-------------------------------LQYKADINA 100

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            +     PLH A   G   +A+ L+  GA V   +++G  P+D+ +    + L +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (296), Expect = 5e-31
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 31/150 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A   G    ++ LI  GA  N  +    +PLHLA S G+ DI   L+Q   DIN  ++ G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           N PL  A   G D V   L                               ++NG   S  
Sbjct: 106 NVPLHYACFWGQDQVAEDL-------------------------------VANGALVSIC 134

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
           +     P+  A +    L+ +   + G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  138 bits (349), Expect = 3e-37
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 10/179 (5%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA   D   +K L+ +G D ++ D  G + L+ A   G        ++K   +    K G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 302 -NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVLSNGVDPS 359
             T    A+      + S  + E  S          +   +  G  D +  +L      +
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 360 SRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           + +     P + +A       M + L +   ++        +   E  +  +  + K++
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  136 bits (346), Expect = 6e-37
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 7/180 (3%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A    ++  +  L+ AGA  N    +   PLH A +     I   L+  G+D +  D  G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
           NT L  A+  G+     L VK+   L      G       AV   D   +   LS     
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLL 417
                   + +H+    G   M  LLL+   S  T +     P +       +  +++ L
Sbjct: 156 -FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  129 bits (326), Expect = 4e-34
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           S        QLK  +    D  K D  G S  + A +     +   L+  G   N+ +  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
              PL +A       +  +L+  G   +  D      L  AV  G+   +K  +      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 359 SSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                   +T  + A       +    L    S         + +      G+ +++ LL
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (268), Expect = 4e-26
 Identities = 16/162 (9%), Positives = 38/162 (23%), Gaps = 40/162 (24%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A    D+  +   +              S +H+    G+ D+ + L+      N  +   
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 302 NTPLL-EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
             P +  AI      +   L K   ++                                 
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDINIY-------------------------------- 222

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
                 +            +AK+++E      +     +  +
Sbjct: 223 ------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  + D+  L+ L +   +         S           +I   +I+K V+        
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK 254

Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
           +  +++  K       +  ++
Sbjct: 255 DLDIVKNNKLDEIISKNKELR 275

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  139 bits (352), Expect = 4e-37
 Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 7/189 (3%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
           L    A    T    +  L  A   G  E +   L    V+ +  D   +TPL  A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 313 HDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 370
              +  LL++ GA ++  D G    L  A + G  +  + +L +G   ++ D    TPLH
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 371 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY 430
            AAS+    +  LLL  GA     +  G + +D       +  +           S    
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH----SLLQA 185

Query: 431 CSQGMIDKM 439
             +  + K+
Sbjct: 186 AREADLAKV 194

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  135 bits (343), Expect = 7e-36
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 29/204 (14%)

Query: 242 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           AA  G+  +L   L     + + +D    +PLHLA       I   L+Q G D++ KDK 
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
           G  PL  A   GH  VT LL+K GA +N  D   F  L  A ++   +    +LS+G DP
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 359 SSRDYDHRTPLHVAASEGL-----YL----------------MAKLLLEAGASVFTKDRW 397
           +  +   ++ + +A +  L     Y                   K  L      F + + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 398 GNTPL----DEGRMCGNKNLIKLL 417
             T L            K + +LL
Sbjct: 211 HETALHCAVASLH-PKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (304), Expect = 2e-30
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA    +     L+  GADP   +  G+S + +A +    +   +  +           G
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK-----------G 179

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCTAVARGDSDFLKRV---LSNGVD 357
           ++ L  A +     V   L  E  +     +  + L  AVA       +     L  G +
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239

Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            + ++ D  TPLHVAA      + ++L + GA +   D  G T L    + G+    +LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  118 bits (298), Expect = 1e-29
 Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 41/172 (23%)

Query: 242 AAYHGDLYQL---KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           A       +    + L+R GA+ N+ + D  +PLH+A  R + D+   L + G  +N  D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDP 358
             G T L  A   GH     LL                               LS G DP
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL-------------------------------LSYGSDP 306

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
           S       T   +          + +L     + T D   +  L E    G+
Sbjct: 307 SIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (268), Expect = 1e-25
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGA 325
            G+S L L                     +  ++    LLEA + G+ + + +LL     
Sbjct: 3   FGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 326 SLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
           + +  D      L  A        ++ +L +G D  ++D     PLH A S G Y + +L
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           LL+ GA V   D W  TPL E        +  LL
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  136 bits (345), Expect = 5e-37
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 254 LIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
            I  GA   N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 313 HDGVTSLLVKEGASLNVDDAGSF----LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
             GV  +L++  A+ ++D         L  A        L+ ++++  D ++ D   ++ 
Sbjct: 102 AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160

Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  127 bits (322), Expect = 7e-34
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A         + LIR  A D +   +DG +PL LA     E +   LI    D+N  D  
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G + L  A    +     +L                               L NG +   
Sbjct: 157 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 185

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (288), Expect = 4e-29
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 260 DPNKTDYDGRSPLHLATSRG-------------YEDITLFLIQKGVDI-NIKDKFGNTPL 305
           D N    DG +PL +A+  G                +    I +G  + N  D+ G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 306 LEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNG-VDPSSRD 362
             A +         L++  A  N+ D+ G + L  AV+       + ++ N   D  +R 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +D  TPL +AA   +  M + L+ + A V   D  G + L       N +   +L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  109 bits (276), Expect = 1e-27
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 31/148 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA       L+ LI + AD N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A + G      +L                               L +  +    
Sbjct: 191 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 219

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           D+  R P  +A     + + +LL     
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 19/87 (21%), Positives = 34/87 (39%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN 328
             P   A +  H  +  LL  E    +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.4 bits (210), Expect = 1e-18
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 23/146 (15%)

Query: 292 VDINIKDKFGNTPLLEAIKCGHDG-------------VTSLLVKEGASLN--VDDAGSFL 336
           +D+N++   G TPL+ A   G                V S  + +GASL+   D  G   
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG--- 57

Query: 337 CT----AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-V 391
            T    A     SD  KR+L    D + +D   RTPLH A S     + ++L+   A+ +
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLL 417
             +   G TPL        + +++ L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.1 bits (152), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           AA  G     K L+   A+ + TD+  R P  +A  R + DI   L  +    +  
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  138 bits (350), Expect = 1e-36
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 17/193 (8%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK---GVDINIKD 298
           A        +  L++AGADP   +   RS LH A +     + ++++       DI   D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 299 KFGNTPLLEAIKCGHDGVTS---LLVKEGASLNVDDAGSF----------LCTAVARGDS 345
           + G T L+           +   LLV++GA ++ D A             L  A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 346 DFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 404
             +K ++   G +   +D D +TP+ +AA EG   +   L++ GASV   D   +T    
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

Query: 405 GRMCGNKNLIKLL 417
            +   + N++ + 
Sbjct: 353 AQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 2e-33
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 242 AAYHGDL--------YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
            A +           ++ K  I AGAD N  D D  +PL LA       +  +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLV---KEGASLNVDDAGSF--LCTAVARGDSDFL 348
             I +K   + L +A      G+   ++   K    +   D      L         D +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 349 KRV---LSNGVD--------PSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDR 396
                 +  G            S  Y  RT LH AA      + K L+ E G++   +D 
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 397 WGNTPLDEGRMCGNKNLIKLL 417
            G TP+      G   ++  L
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (310), Expect = 3e-31
 Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ 289
           +H +           +G+ +           P + + +    LH   + G   IT  + +
Sbjct: 58  QHYSLYPN--PQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITR 114

Query: 290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK 349
           + V+I    +   T L           +  L+   A                       K
Sbjct: 115 ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA-----------------------K 150

Query: 350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 409
             ++ G D ++ D D  TPL +A       +   L++AGA     ++   + L +     
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 210

Query: 410 NKNLIKLL 417
           +  ++  +
Sbjct: 211 DFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (255), Expect = 8e-24
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 43/160 (26%)

Query: 242 AAYHGDLYQL---KGLIRAGADPNKT--------DYDGRSPLHLATSRGYEDITLFLI-Q 289
            A++    Q+   K L+  GA  +           Y GR+ LH A       I  +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK 349
           KG + + +D+ G TP++ A + G   V   L                             
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL----------------------------- 332

Query: 350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389
             +  G    + D    T   +A +   + +  +      
Sbjct: 333 --IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
               +++    +  L  A+  GY              N    +   P  +    G+D + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 318 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 375
                        +  S   L T  A G     + +    V+     ++ RT LH  AS 
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHN-RTVLHWIASN 135

Query: 376 G--------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                    +   AK  + AGA V   D   NTPL    +   + L+  L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 289 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 348
           +K    +         LLEA   G+       ++  +                 G+    
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGNGNDFLG 77

Query: 349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 408
               +N   P+  + +    LH  A+ G Y + + +     ++    R   T L      
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 409 GNKNLIKLL 417
            +    + L
Sbjct: 136 SSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
           AA  G +  +  LI+ GA     D    +   LA +  + +I     +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  131 bits (333), Expect = 4e-36
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)

Query: 252 KGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309
           +  I    D   N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 310 KCGHDGVTSLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 367
           K    G+   L+ +G+++N  D +G   L  ++  G S+    +L +G + + R+ +  T
Sbjct: 77  KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 368 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           PL VA+  G   + K LLE GA +  +D  G T     R+ G + +IK+ 
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (263), Expect = 2e-26
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 31/149 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +  L   + L+  G++ N  D+ G++PL  +   GY +++ FL++ G ++N ++  G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL+ A K G   +   L                               L  G D S+R
Sbjct: 135 ETPLIVASKYGRSEIVKKL-------------------------------LELGADISAR 163

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
           D    T    A   G   + K+  E   +
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (253), Expect = 7e-25
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G+  +K   +G     +   +       FL       N +D +  TPL+ A   G +   
Sbjct: 1   GSHMDK---NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAI 51

Query: 318 SLLVKEGASLNV-DDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 375
             LV+    L   D  GS  L  AV        +++LS G + +++D+  +TPL  +   
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 376 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           G   M+  LLE GA+V  ++  G TPL      G   ++K L
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  129 bits (327), Expect = 5e-36
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 257 AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 316
                +       + L  A +RG  +    L++ G D N  ++FG  P+   +  G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 317 TSLLVKEGASLNV-DDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
             LL+  GA  N  D A     +  A   G  D L  +   G      D   R P+ +A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 374 SEGLYLMAKLLLEAGA 389
            +G   +A+ L  A  
Sbjct: 120 EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 33/128 (25%)

Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
              I++     +  L  A   G       L                              
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQL------------------------------ 31

Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT-PLDEGRMCG 409
            L  G DP++ +   R P+ V    G   +A+LLL  GA     D    T P+ +    G
Sbjct: 32  -LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89

Query: 410 NKNLIKLL 417
             + + +L
Sbjct: 90  FLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           AA  G L  L  L RAGA  +  D  GR P+ LA  +G+ DI  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  132 bits (335), Expect = 6e-36
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G+L  ++  ++   DP++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDA--GS---FLCTAVARGDSDFLKRVLSNGV 356
            TPL  A  C    +   LV+ GA++       G+     C     G +D    +     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
                +      L   ++E    +         +V  +D    T      + G +  +
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  118 bits (299), Expect = 6e-31
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 252 KGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 308
           + ++R    P K      +    L  A   G  ++    +++  D +  ++ G T L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 309 IKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDH 365
           I   +  +   L+  GA++N  D+  +  L  A +  D+     ++ +G    +    D 
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 366 RTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPL 402
            T         EG    A  L +   S+   +      L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 1/81 (1%)

Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           A         G       L          +      L    S  + D   F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVL 182

Query: 296 IKDKFGNTPLLEAIKCGHDGV 316
            +D    T    A   G +G 
Sbjct: 183 RRDGPEETDWWWAALHGQEGY 203

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (334), Expect = 8e-36
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 9/185 (4%)

Query: 242 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---K 297
           A    + +++ + L    +   + D DGR PLH + S    +IT FL+ K  ++N+    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----AVARGDSDFLKRVLS 353
           D  G TP   A   G+  V   L       +++   +   T    AV +   +  + ++ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 412
           NG     +D  ++ PLH AAS G   + +LL   G S V  +D+ G TPL      G+ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 413 LIKLL 417
              LL
Sbjct: 189 AAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  122 bits (310), Expect = 2e-32
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 268 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
              PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 327 LNVDDAGSF-----LCTAVARGDSDFLKRVLSN--GVDPSSRDYDHRTPLHVAASEGLYL 379
           +N+DD            A + G+ + +K +       D +       T LH+A  +  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +++ L+E GASV  KD++   PL      G+  LI+LL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  119 bits (301), Expect = 3e-31
 Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 242 AAYHGDLYQLKGLI--RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
           A   G+L  +K L       D NK    G + LHLA  + + +++ FLI+ G  + IKDK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359
           F   PL  A   G   +  LL   G S                                +
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS------------------------------AVN 168

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            +D    TPL  A +EG    A LL+E  GA     D  G    D   +  N+ + K  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 224

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  129 bits (328), Expect = 1e-35
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 31/176 (17%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G   +++ L+  GAD N  D  G +PLHLA   G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A   GH  +  +L+K GA +N                                 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNA-------------------------------N 109

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           D +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
           AA  G L  ++ L++ GAD N  D  G++   ++   G ED+   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  129 bits (326), Expect = 2e-35
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)

Query: 242 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           AA  GD+ +++ L+ R    P+  +  G++ L +    G   I L L+++G   N++D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 67

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G +P+ +A + G      +LV+ GA +NV                               
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNV------------------------------- 96

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            D     P+H+A  EG   +   L    + +  +D  G TPL+     G ++L+ +L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (266), Expect = 4e-27
 Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L++ GA PN  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
             V S L                                    D   RD    TPL +A 
Sbjct: 114 TAVVSFLAA--------------------------------ESDLHRRDARGLTPLELAL 141

Query: 374 SEGLYLMAKLLLE 386
             G   +  +L  
Sbjct: 142 QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 85.9 bits (214), Expect = 4e-20
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G L  LK L+  GAD N  D  G  P+HLA   G+  +  FL     D++ +D  G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133

Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
            TPL  A++ G   +  +L  
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 301 GNTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAGSFLCTA---VARGDSDFLKRVLSNGV 356
               L  A   G    V  LL +E    + D    F  TA   +  G +     +L  G 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELV--HPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
            P+ +D    +P+H AA  G     K+L+E GA V   D  G  P+      G+  ++  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 417 L 417
           L
Sbjct: 120 L 120

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  130 bits (330), Expect = 2e-35
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 8/164 (4%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
               G        +       +      +PLH A  RG        +   V +N  DK G
Sbjct: 52  GTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 302 NTPLLEAIKCGHDGVTSLLVKE-GASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
           +T L  A   GH  +  +L  +    LN  +      L  A  +G +D ++ +L+ G   
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
             R+ + +    +A +     + K      A     +       
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  123 bits (311), Expect = 1e-32
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 4/158 (2%)

Query: 261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
           P K    G+  +  A           L  +  DI       +T   +    G  G+    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 321 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 380
                + ++D+    L  A  RG+  +L+  L N V  +  D    T L+ A   G   +
Sbjct: 65  YVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 381 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            ++L  +    +  +++ G+T L      G  ++++LL
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (292), Expect = 5e-30
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 300
           AA  G+L  L+  +      N  D  G + L+ A   G++DI   L  Q  +++N ++K 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
           G+T L  A   G+  +  LL+ +GA  ++ +         A     +  LK+        
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 359 SSRDYDHRTPLHVAASEG 376
           +  + +       +  E 
Sbjct: 200 TLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA+ G    ++ L+  GA  +  + + +    +AT+     +            + +   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 302 NTPLLEAIKCGH 313
                ++    H
Sbjct: 207 YLDDEDSDLEHH 218

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  127 bits (322), Expect = 4e-35
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G   +++ L+  GA     D+ G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A   GH  +  +L                               L +G D +++
Sbjct: 68  RTPLHMAASEGHANIVEVL-------------------------------LKHGADVNAK 96

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  126 bits (319), Expect = 1e-34
 Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 9/156 (5%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
            +L   P D+   I   L     ++   F+  S   +  + +        PG++I   G 
Sbjct: 7   KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGE 66

Query: 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC--NIPQPYTVCICELSR 180
            VD L FV  G LE +       +E V+ L     FG+V             V       
Sbjct: 67  SVDSLCFVVSGSLEVI-----QDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCD 121

Query: 181 LLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLR 216
           L  I + +   +LE Y         NL+     NLR
Sbjct: 122 LHVIKRDALQKVLEFYTAFSHSFSRNLIL--TYNLR 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  126 bits (319), Expect = 2e-34
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  GDL QL  L++   + N  +  GR+ L +    G  +I   L+ +G + ++KD+ G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
              + +A + G       L++  A +N+                                
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNI-------------------------------E 99

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (269), Expect = 2e-27
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 30/136 (22%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA+P+  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
             V   LVK  AS                              +   R++   T   +A 
Sbjct: 116 LRVVEFLVKHTAS------------------------------NVGHRNHKGDTACDLAR 145

Query: 374 SEGLYLMAKLLLEAGA 389
             G   +  L+   GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.7 bits (146), Expect = 8e-11
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 330 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           +  G+ L +A ARGD + L  +L N V+ ++++   RT L      G   +A+ LL  GA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61

Query: 390 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +   KDR G   + +    G  + ++ L
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  123 bits (311), Expect = 3e-33
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 37/191 (19%)

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA----TSRGYEDITLFLIQKGVDINI 296
           +AA  G       L   G + +K      + L+             I++FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
           + K G T      + G + +T                         G ++  K  L  G 
Sbjct: 71  RTKEGTTLFFPLFQGGGNDIT-------------------------GTTELCKIFLEKGA 105

Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAK-------LLLEAGASVFTKDRWGNTPLDEGRMCG 409
           D ++    ++  +            +       +  ++G  +  KD+WG T L+  + C 
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 410 NKNLIKLLEDA 420
               +K++ED 
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.7 bits (236), Expect = 8e-23
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT-------LFL 287
              +       G     K  +  GAD        +  +       + D         L  
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 288 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
            Q G+ + IKDK+G T L    +C       ++       N+ +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 13/119 (10%)

Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-FLCTAVARGDSDFLKRV-- 351
           N   ++    +  A   G       L ++G         S  L   +   + +   ++  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 352 --LSNGVDPSSRDYDHRTPLHVAASEG------LYLMAKLLLEAGASVFTKDRWGNTPL 402
             ++ G D  SR  +  T        G         + K+ LE GA +    +     +
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 6/46 (13%), Positives = 12/46 (26%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
             ++G      D  G + L              +       N+K+ 
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  123 bits (311), Expect = 5e-33
 Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +   +   +   ++       +  V  F G  S F+ ++V  +  E F P + ++++G  
Sbjct: 52  IFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTF 111

Query: 124 VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183
            D+++F+  G+++   +  DG     + L   S FGE+ +L    +  +V       L  
Sbjct: 112 GDRMFFIQQGIVDI--IMSDG--VIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFS 167

Query: 184 IDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQL 220
           +  Q F  +L+ +    + +       + +  RL ++
Sbjct: 168 LSVQHFNQVLDEFPAMRKTME------EIAVRRLTRI 198

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (314), Expect = 5e-33
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 30/181 (16%)

Query: 242 AAYHGD----LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           A  H +    +  ++ +    A  N  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVD 357
           D  GNTPL  A + G      +L +   + ++                            
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------------------------HSI 109

Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 416
             + +Y+  T LH+A+  G   + +LL+  GA V  ++   G T L       N +L+ L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 417 L 417
           L
Sbjct: 170 L 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (286), Expect = 5e-29
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 38/169 (22%)

Query: 242 AAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
           A   G L  +  L ++   P        T+Y+G + LHLA+  GY  I   L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 296 IKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
            ++   G T L  A+   +  + SLL                               L  
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLL-------------------------------LKC 173

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
           G D +   Y   +P  +        + + L +                 
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 16/76 (21%), Positives = 24/76 (31%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A    +   +  L++ GAD N+  Y G SP  L   R    I   L Q  ++        
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 302 NTPLLEAIKCGHDGVT 317
                   +      T
Sbjct: 218 EDEESYDTESEFTEFT 233

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  122 bits (308), Expect = 7e-33
 Identities = 58/177 (32%), Positives = 78/177 (44%), Gaps = 33/177 (18%)

Query: 242 AAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           AA  GD+  +K L      +    +    +PLH A       +  +L+Q G D++ KDK 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G  PL  A   GH  V  LLVK GA +NV                               
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNV------------------------------- 103

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            D    TPLH AA++G Y + KLLL+ GA    K+R GNTPLD  +  G+ ++  LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  106 bits (268), Expect = 3e-27
 Identities = 41/161 (25%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGV 316
           GA  N    +    L  A   G  +    L   + V+    +   +TPL  A       V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 317 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 376
              L                               L +G D  ++D     PLH A S G
Sbjct: 58  VEYL-------------------------------LQHGADVHAKDKGGLVPLHNACSYG 86

Query: 377 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            Y +A+LL++ GA V   D W  TPL E    G   + KLL
Sbjct: 87  HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  106 bits (267), Expect = 4e-27
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +  +  ++ L++ GAD +  D  G  PLH A S G+ ++   L++ G  +N+ D + 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL EA   G   +  LL                               L +G DP+ +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-------------------------------LQHGADPTKK 137

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           + D  TPL +   +G   +  LL    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  121 bits (307), Expect = 7e-33
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 255 IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314
           +   A  +         L  A +RG  +    L++ G + N  + +G  P+   +  G  
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 315 GVTSLLVKEGASLNVDDAGSF---LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 371
            V  LL+  GA  N  D  +    +  A   G  D L  +   G     RD   R P+ +
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 372 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
           A   G   +A+ L  A       +       +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 254 LIRAGADPNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
           L+  GA+PN  D      P+H A   G+ D  + L + G  ++++D +G  P+  A + G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD 346
           H  V   L          +         A G SD
Sbjct: 123 HRDVARYLRAAAGGTRGSNH---ARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 19/64 (29%), Positives = 25/64 (39%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G L  L  L RAGA  +  D  GR P+ LA   G+ D+  +L          +   
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

Query: 302 NTPL 305
               
Sbjct: 145 IDAA 148

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 3e-32
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 24/182 (13%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
               G            AD      +  +P   A  +  E     L+ +  D++  D+ G
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDENG 76

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
            T LL     G D    LL + GA L+  D  G    L  A      + ++ ++  G D 
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
              D    T L +A            ++ G  +                 G + +I +LE
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI-----------------GLEKVINVLE 179

Query: 419 DA 420
             
Sbjct: 180 GQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  111 bits (281), Expect = 5e-29
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
               ++T  +G     +    G+    +       D+  + +   TP   A +   +   
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQAL 60

Query: 318 SLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAAS 374
           S L+ E   ++  D      L      G    ++ +   G D   RD     T LH+AA 
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 375 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                + + L+E GA +  +D  G T L+  R           
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.5 bits (236), Expect = 9e-23
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            A  G    ++ L  AGAD +  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV 340
           G T L  A +          ++ G  + ++   + L   V
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (307), Expect = 4e-32
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 31/207 (14%)

Query: 242 AAYHGDLYQL-KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----N 295
           AA   D+  L K L   G + ++    G + LH+A      +  + L++   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT---------------AV 340
            +   G T L  A+   +  +   L+  GAS++    GS                   A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASV----- 391
             G  + ++ ++ +G D  ++D    T LH+   +        M  LLL           
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 392 -FTKDRWGNTPLDEGRMCGNKNLIKLL 417
               +  G TP     + GN  + + L
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.9 bits (229), Expect = 3e-21
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 40/164 (24%)

Query: 268 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
             SPL LA      + ++  L  +G +++ +   G T L  A    +     +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           L  +                            +S  Y+ +T LH+A       + + LL 
Sbjct: 63  LVFEP--------------------------MTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 387 AGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 417
            GASV  +               +G  PL      G++ +++LL
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  121 bits (307), Expect = 6e-32
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           ++  G+   ++ +I    DP+  + +G + LH A   G+ +I  FL+Q GV++N  D  G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A  C +  V   LV+ GA++                                  
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMT----------------------------YS 135

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
           D            EG    ++ L      +   ++     L
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  116 bits (292), Expect = 7e-30
 Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 35/179 (19%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
                        I  G           + L  ++  G  D+   +I +  D ++ +  G
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            T L  A+  GH  +   LV+ G ++N                               + 
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVN-------------------------------AA 99

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK---DRWGNTPLDEGRMCGNKNLIKLL 417
           D D  TPLH AAS     + K L+E+GA+VF     D        E    G     + L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 7/78 (8%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
               G     + L          +      L     +  +++    +++G  + I  +  
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHRED 202

Query: 302 N--TPLLEAIKCGHDGVT 317
                   A     +G  
Sbjct: 203 EDEIEWWWARLNDKEGYV 220

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  119 bits (301), Expect = 1e-31
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +L  L   +  KI        +  + LF      F+  ++ ++  E F PG+ I+ +G +
Sbjct: 53  ILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTI 112

Query: 124 VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183
             ++YF+ HGV+    V   G++E    L   S FGE+ +L    +  +V      RL  
Sbjct: 113 GKKMYFIQHGVVS---VLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYS 167

Query: 184 IDKQSFTNILEIY 196
           +   +F  +LE Y
Sbjct: 168 LSVDNFNEVLEEY 180

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  117 bits (294), Expect = 2e-30
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 8/156 (5%)

Query: 63  DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGN 122
           +LL   P ++   I+  L    + ++ LF+  S   +  + + +   F  PGE ++ QG+
Sbjct: 56  ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGD 114

Query: 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYT--VCICELSR 180
            +  +YFVC G +E +          ++ L      G  S+           V       
Sbjct: 115 ALQAIYFVCSGSMEVL-----KDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCD 169

Query: 181 LLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLR 216
           L  I  +    +L +Y    +K ++ +      NLR
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  112 bits (284), Expect = 5e-30
 Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A  +GDL ++K  +  G D N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPLL A+  GH     LL                               LS G D + +
Sbjct: 74  ITPLLSAVYEGHVSCVKLL-------------------------------LSKGADKTVK 102

Query: 362 DYDHRTPLHVAASEG 376
             D  T      ++ 
Sbjct: 103 GPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (274), Expect = 1e-28
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 31/149 (20%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
                   A   G  D     + KG D+N   + G  PL  A  CG   +   L+ +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           +N                                 D  H TPL  A  EG     KLLL 
Sbjct: 66  INA-------------------------------PDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 387 AGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
            GA    K   G T  +       K L++
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 6e-19
 Identities = 22/72 (30%), Positives = 28/72 (38%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G L  L+ L+  GAD N  D    +PL  A   G+      L+ KG D  +K   G
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 302 NTPLLEAIKCGH 313
            T          
Sbjct: 107 LTAFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDI 283
           SA Y G +  +K L+  GAD      DG +      ++  + +
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  116 bits (293), Expect = 6e-30
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 36/178 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KF 300
           AA   D   L  L+    D +  D +GR+ L      G +     L + G D++ +D + 
Sbjct: 52  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G T L  A       V   L                               +  G D   
Sbjct: 111 GLTALHMAAGYVRPEVVEAL-------------------------------VELGADIEV 139

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
            D    T L +A            ++ G  +  +       + EG++     + +++E
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIVE 194

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (287), Expect = 4e-29
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 16/171 (9%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
            A  G    ++ L  AGAD +  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G T L  A +          ++ G  + ++   + L   V            +   +   
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY---------AEVDEIVE 194

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
           +    +   ++   +       +     A    KD      L     E  +
Sbjct: 195 KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (274), Expect = 3e-27
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
           ++T  +G     +    G+    +       D+  +     TP   A +   +   S L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 322 KEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLY 378
            E   ++  D      L      G    ++ +   G D   RD     T LH+AA     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 379 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            + + L+E GA +  +D  G T L+  R           
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 31/126 (24%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCTAVARGDSDFLKRVL 352
            +     G    L   K GH           A  +V         TA  + D   L   L
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALS-QL 64

Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNK 411
               D  + D + RT L   A  G     +LL EAGA +  +D R G T L         
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 412 NLIKLL 417
            +++ L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 10/96 (10%), Positives = 17/96 (17%), Gaps = 24/96 (25%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDY----------------------DGRSPLHLATSRG 279
           A            ++ G                               G+   +L   + 
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 315
             D          +   KD      L  A+     G
Sbjct: 211 GGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVIG 244

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  111 bits (281), Expect = 1e-29
 Identities = 57/148 (38%), Positives = 75/148 (50%), Gaps = 31/148 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G L  +K L+ AGAD N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A + GH  V  LL                               L  G D +++
Sbjct: 69  RTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNAK 97

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           D + RTPLH+AA  G   + KLLLEAGA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (277), Expect = 6e-29
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 31/151 (20%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           +N                                +D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VNA-------------------------------KDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           AGA V  KD+ G TPL      G+  ++KLL
Sbjct: 90  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (274), Expect = 9e-29
 Identities = 41/145 (28%), Positives = 56/145 (38%), Gaps = 33/145 (22%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G        DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 318 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 377
            LL+ +GA +N                                R  D  TP H+A   G 
Sbjct: 59  KLLLAKGADVNA-------------------------------RSKDGNTPEHLAKKNGH 87

Query: 378 YLMAKLLLEAGASVFTKDRWGNTPL 402
           + + KLL   GA V  +    +   
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 97.4 bits (244), Expect = 1e-24
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 31/129 (24%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G   ++K L+  GAD N    DG +PLHLA   G+ +I   L+ KG D+N + K G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           NTP   A K GH  +  LL                                + G D ++R
Sbjct: 76  NTPEHLAKKNGHHEIVKLL-------------------------------DAKGADVNAR 104

Query: 362 DYDHRTPLH 370
            +      H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.8 bits (180), Expect = 7e-16
 Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 31/124 (25%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
                K GNTPL  A K GH      L+ +GA +N                         
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN------------------------- 36

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
                 +R  D  TPLH+AA  G   + KLLL  GA V  + + GNTP    +  G+  +
Sbjct: 37  ------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90

Query: 414 IKLL 417
           +KLL
Sbjct: 91  VKLL 94

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  112 bits (282), Expect = 7e-28
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 22/184 (11%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINIK 297
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 298 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLN--VDDAGSFLCTAVARG 343
           D    T L              A K   D +   +VK+         +            
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 344 DSDFLKRVLSNGVDPS----SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 399
             D +   L      +    ++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 400 TPLD 403
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  102 bits (255), Expect = 3e-24
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 254 LIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
                 + N   D  G +PLH  TS    ++   L++ G +    D  G + L++A+K  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 313 H----DGVTSLLVKEGASLNVDD-------------AGSFLCTAVARGDSDF-LKRVLSN 354
           +        +LL      L ++D             +G   C+A A+   D  +  ++  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF----TKDRWGNTPLDEGRMCGN 410
              P     + +       +          L+    +      +D  G+T L+     GN
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 411 KNLIKLL 417
            +++  L
Sbjct: 296 ISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 83.2 bits (205), Expect = 1e-17
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 37/197 (18%)

Query: 212 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
            S L++ +       +  + + +L   +    +         L    ++ N         
Sbjct: 40  SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99

Query: 272 L-HLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
             H++     +++        +++NI  D+ GNTPL       +  +   L         
Sbjct: 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL--------- 150

Query: 330 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG----LYLMAKLLL 385
                                 + +G +    D    + L  A              LL 
Sbjct: 151 ----------------------VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 386 EAGASVFTKDRWGNTPL 402
                +  +D    T L
Sbjct: 189 YLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.8 bits (160), Expect = 5e-12
 Identities = 17/66 (25%), Positives = 24/66 (36%)

Query: 240 NSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
           N       L  L          N  D +G + L++A   G   I   L+  G D  I +K
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 300 FGNTPL 305
            G  P+
Sbjct: 315 SGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.4 bits (159), Expect = 8e-12
 Identities = 22/182 (12%), Positives = 46/182 (25%), Gaps = 45/182 (24%)

Query: 205 TNLLEGKESNLRLKQLKSDIT---------FHIGKHEAELALRVNSAAYHGDLYQLKGLI 255
            N  +       L  L   +           H     + +     +A Y+ D+  +  ++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIV 233

Query: 256 RAGADPNKTDYDGRSPLHLA----TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 311
           +    P ++  + +                +           +N +D  G+T L  A + 
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 312 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 371
           G+  +   L                               L  G DP   +     P+  
Sbjct: 294 GNISIVDAL-------------------------------LDYGADPFIANKSGLRPVDF 322

Query: 372 AA 373
            A
Sbjct: 323 GA 324

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score =  107 bits (269), Expect = 1e-27
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G  + + V  DG
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDG 98

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
               V       SFGE++++ N P+  T+       L  +D+ +F  I+       RK+ 
Sbjct: 99  VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158

Query: 205 TNL 207
            + 
Sbjct: 159 ESF 161

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (266), Expect = 2e-27
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 258 GADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 316
           G+  +     D    L  A   G +D    L+  G D+N KD++G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 317 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 376
             +L+K GA +N                                 D    TPLH+AA  G
Sbjct: 63  VEVLLKNGADVNA-------------------------------VDAIGFTPLHLAAFIG 91

Query: 377 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
              +A++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 99.8 bits (250), Expect = 4e-25
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 31/145 (21%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G   +++ L+  GAD N  D  G +PL+LAT+ G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            TPL  A   GH  +  +L                               L +G D +++
Sbjct: 81  FTPLHLAAFIGHLEIAEVL-------------------------------LKHGADVNAQ 109

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLE 386
           D   +T   ++   G   +A++L +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.1 bits (173), Expect = 8e-15
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 32/129 (24%)

Query: 290 KGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 348
           +G   +          LLEA + G D    +L                            
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRIL---------------------------- 33

Query: 349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 408
              ++NG D +++D    TPL++A + G   + ++LL+ GA V   D  G TPL      
Sbjct: 34  ---MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90

Query: 409 GNKNLIKLL 417
           G+  + ++L
Sbjct: 91  GHLEIAEVL 99

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  108 bits (271), Expect = 1e-26
 Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 39/188 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD--------------YDGRSPLHLATSRGYEDITLFL 287
           A    ++  +  L+  GAD                   Y G  PL LA       I  FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 288 IQKG---VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD 344
           +Q      DI+ +D  GNT L   ++   + V +          +   G           
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----------- 216

Query: 345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 404
                ++          +    TPL +AAS G   +   +L+                  
Sbjct: 217 ----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 405 GRMCGNKN 412
                + +
Sbjct: 266 AAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  100 bits (251), Expect = 5e-24
 Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 37/205 (18%)

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLAT---SRGYEDITLF 286
            +A    + N       L  L+   +   D    D + G++ L  A      G  D    
Sbjct: 18  FDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 287 LIQKGVDINI-----------KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF 335
           L+      +                G T L  AI+  +  + +LLV+ GA +     G F
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVF 392
                                      Y    PL +AA      + K LL+     A + 
Sbjct: 136 FKKT-----------------KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 393 TKDRWGNTPLDEGRMCGNKNLIKLL 417
            +D  GNT L       +  +    
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 45/186 (24%)

Query: 257 AGADPNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKD-KFGNTPLLEA 308
             A         R  +  A ++                 ++  D   KD + G T LL+A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 309 ---IKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 365
              +  G +   +LL+      +                              +   Y  
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFV--------------------NASYTDSYYKG 101

Query: 366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNK 411
           +T LH+A       +  LL+E GA V                   +G  PL         
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 412 NLIKLL 417
            ++K L
Sbjct: 162 AIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
                  +  ++ Y+  L     L         T+  G +PL LA S G   +  +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 291 GVDINIKDKFGNTPLLEAIKCGH 313
            +               A    H
Sbjct: 256 EIH-------EPECRHAAAHHHH 271

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (260), Expect = 2e-25
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 35/178 (19%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-------------KFGNTP 304
            A      Y G S LH+A  +        L++ G D++++               FG  P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 305 LLEAIKCGHDGVTSLLVKEGASL-NVDDAGSFLCT----AVARGDSDFLKRVLSNGVDPS 359
           L  A       V + L++      +++   S   T     V   D               
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
             +    + L +   +GL  M   L          +  G TPL      G   + + +
Sbjct: 185 --NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (254), Expect = 2e-24
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 31/174 (17%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD-------------YDGRSPLHLATSRGYEDITLFLI 288
           A     L  +K L+  GAD +                Y G  PL LA      D+  +L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 289 QKGV---DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
           +       +   D  GNT L   +    +                   S L   +  G  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADN---------------SPENSALVIHMYDGLL 201

Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 399
               R+          ++   TPL +AA EG   + + +L+   S        +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.3 bits (245), Expect = 2e-23
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 43/187 (22%)

Query: 241 SAAYHGDLYQLKGLI--------RAGADPNKTDYDGRSPLHLA---TSRGYEDITLFLIQ 289
           S    G   +L GL+                    G++ L  A      G     + L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 290 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT 338
                             +   G++ L  AI+        LLV+ GA +++   G F   
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK 127

Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 395
                                +  Y    PL +AA    + +   LLE     AS+   D
Sbjct: 128 ------------------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 396 RWGNTPL 402
             GNT L
Sbjct: 170 SLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 45/176 (25%)

Query: 266 YDGRSPLHLATSRGY----EDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDG-- 315
           +D R  L    SRG       +  +L             +   G T L++A+    DG  
Sbjct: 1   FD-RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN 59

Query: 316 -VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS 374
                L++                                    +   Y   + LH+A  
Sbjct: 60  ACIMPLLQIDKDSGNPK--------------------PLVNAQCTDEFYQGHSALHIAIE 99

Query: 375 EGLYLMAKLLLEAGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 417
           +      KLL+E GA V  +               +G  PL         +++  L
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 9e-24
 Identities = 39/84 (46%), Positives = 53/84 (63%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G L  +K L+ AGAD N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA 325
            TPL  A + GH  V  LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.0 bits (235), Expect = 1e-23
 Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 31/123 (25%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
           +N                                +D + RTPLH+AA  G   + KLLLE
Sbjct: 61  VNA-------------------------------KDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 387 AGA 389
           AGA
Sbjct: 90  AGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.5 bits (156), Expect = 6e-13
 Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 31/117 (26%)

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G TPL  A + GH  V  LL++ GA +N                                
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA------------------------------- 30

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.4 bits (122), Expect = 3e-08
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.4 bits (233), Expect = 3e-23
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 34/143 (23%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
            + H   +   GL+  G+       D    L  A   G +D    L+  G D+  KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           +TPL  A + GH  V  LL                               L  G D  ++
Sbjct: 58  STPLHLAARNGHLEVVKLL-------------------------------LEAGADVXAQ 86

Query: 362 DYDHRTPLHVAASEGLYLMAKLL 384
           D   +T   ++   G   +A++L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
            +S  +   +  L+ +G  +          LLEA + G D    +L+  GA +       
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVA------ 51

Query: 335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
                                    ++D +  TPLH+AA  G   + KLLLEAGA V  +
Sbjct: 52  -------------------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 395 DRWGNTPLDEGRMCGNKNLIKLLE 418
           D++G T  D     GN++L ++L+
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEILQ 110

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.4 bits (240), Expect = 1e-22
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 50/176 (28%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD--------------YDGRSPLHLATSRGYEDITLFL 287
           A      + ++ L+  GAD +                 Y G  PL LA       I  +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 288 IQKG---VDINIKDKFGNTPLLEAIKCGHD---------GVTSLLVKEGASLNVDDAGSF 335
            + G    D+  +D  GNT L   +    +          +  LL+ + A L  D     
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
                                  +  + D  +PL +AA  G   + + ++    + 
Sbjct: 217 ---------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 94.5 bits (235), Expect = 5e-22
 Identities = 38/187 (20%), Positives = 54/187 (28%), Gaps = 42/187 (22%)

Query: 241 SAAYHGDLYQLKG----LIRAGADPNKTDY----DGRSPLHLA---TSRGYEDITLFLIQ 289
                G    L+G    L+         ++     G++ L  A    S G  D    L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 290 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT 338
                                 G T L  AI+        LLV++GA ++    G F   
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 395
                             D     Y    PL +AA      +   L E G   A +  +D
Sbjct: 131 K-----------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173

Query: 396 RWGNTPL 402
             GNT L
Sbjct: 174 SRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.7 bits (189), Expect = 7e-16
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 46/178 (25%)

Query: 265 DYDGRSPLHLATSRG----YEDITLFLIQKGVDINIKD----KFGNTPLLEA---IKCGH 313
            ++ R  L    SRG     E +  FL+     +  ++      G T L +A   +  G 
Sbjct: 3   VFN-RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
           +    +L+                        +  + + S   D     Y  +T LH+A 
Sbjct: 62  NDTIPILLDIAEKTG-----------------NMREFINSPFRD---VYYRGQTALHIAI 101

Query: 374 SEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNKNLIKLL 417
                   +LL+E GA V  + R              +G  PL         +++  L
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 242 AAYHGDLYQLKGLIRAG---ADPNKTDYDGRSPLHLATSRGYE---------DITLFLIQ 289
           AA     + +  L   G   AD  + D  G + LH   +              +   L+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 290 KGVDIN-------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 328
           K   +        + +  G +PL+ A K G  G+   +++   +  
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 254 LIRAGADPNKT-------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
           L+   A            + DG SPL +A   G   I   +I++ +       
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG-VGED 143
           + +V LF+      ++ I  R+    F     ++ +G+ V+++ F+  G LE V   G  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQP---------YTVCICELSRLLRIDKQSFTNILE 194
                 S L+     G+  +   +             TV          +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 195 IY 196
            +
Sbjct: 128 QF 129

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 84.0 bits (208), Expect = 6e-19
 Identities = 22/135 (16%), Positives = 56/135 (41%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
           +  + K+ LF   S+E +  +   +          ++ +G+  D L  +  G +  +   
Sbjct: 38  LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI 97

Query: 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGR 201
            +   +T++++   +  GE+S++  +P+  +      +    + + +   +L      G 
Sbjct: 98  PNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGN 157

Query: 202 KVLTNLLEGKESNLR 216
           KVL  LL+   +  R
Sbjct: 158 KVLIRLLQLLTARFR 172

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           + +  LF     E   ++   + E     G+ +  +G+  D+LY V  G ++      DG
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
            E  ++ + P+   GE+S+    P+  T       +LL +        L +       +L
Sbjct: 67  RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126

Query: 205 TNLLEGKESNLRLKQLKSDITFHIGKHEAELALR 238
             +        RL++    +        ++L   
Sbjct: 127 RAVAR------RLRKTNDAM--------SDLVFS 146

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 84.9 bits (210), Expect = 7e-19
 Identities = 29/155 (18%), Positives = 72/155 (46%), Gaps = 17/155 (10%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           + + CL++ L R+  R +                     + +Y   ++ + + K  ++  
Sbjct: 94  ATSDCLLWALDRLTFRKI-------------LLGSSFKKRLMYDDLLKSMPVLKSLTTYD 140

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158
             ++   +  + + PGE I+ +G+  +  Y + +G    V V + G +  +++L+ +  F
Sbjct: 141 RAKLADALDTKIYQPGETIIREGDQGENFYLIEYG---AVDVSKKG-QGVINKLKDHDYF 196

Query: 159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
           GEV++L ++P+  TV   + +++  + K  F  +L
Sbjct: 197 GEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           I    LF    S+    ++  + E+    G  I++QG+  D  Y V  G    V    + 
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKG---TVDFYVND 65

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
               V+   P SSFGE++++ N P+  TV       L  +D+ +F  IL       R + 
Sbjct: 66  --NKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123

Query: 205 TNLLE 209
            +LL+
Sbjct: 124 DDLLK 128

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           +  V LF+      + +IV  +       G VI   G   D+++FV  G    V V    
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG---SVSV---- 65

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
           +     +L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 205 TNLLEGKESNLRLKQLKS 222
              LE      R     S
Sbjct: 126 KTALE------RRGAAAS 137

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 85.4 bits (211), Expect = 3e-18
 Identities = 39/292 (13%), Positives = 73/292 (25%), Gaps = 68/292 (23%)

Query: 208 LEGKESNLRLKQLKSD-ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY 266
           L     N   KQL SD     I          +   +   D   L  L+ +         
Sbjct: 69  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT--LCLLLTSDEIVKVIQA 126

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF--GNTPLLEAIKCGHDGVTSLLVKEG 324
           +      LA   G+  +   L +      +             A + GH  V + L +  
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 325 ASLNVDDAGS-----FLCTAVARGDSDFLKRVLSNGVDPSSRDY---------------- 363
            +       +     F   AV RG  + +  +L   V  +  +                 
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246

Query: 364 ------DHRTPLHVAASEGL--------------------------------YLMAKLLL 385
                 +      ++  +G+                                +L++   +
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306

Query: 386 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL----EDAECTQLSEFHYCSQ 433
           +A A   T     N  L      GN+    LL         T+ + ++    
Sbjct: 307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINET 358

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 26/269 (9%)

Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAG---------ADPNKTDYDGRSPLHLATSRGYE 281
           ++  + + +        + QL  L  A          +D +K          +A   G  
Sbjct: 46  YKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCS 105

Query: 282 ---DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--- 335
              D    L+     + +           A + GH  V + L +   +  +    +    
Sbjct: 106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 165

Query: 336 -LCTAVARGDSDFLKRVLSNGVDPSSRDY--DHRTPLHVAASEGLYL-MAKLLLEAGASV 391
               A   G    L R+       ++     ++      AA    +  +   LL+    +
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY-CSQGMID--KMHPRKCTVFP 448
              +       + G    N  + + +   +      F      G+ D           + 
Sbjct: 226 AYAEIHEF---EYGEKYVNPFIARHVNRLKEMH-DAFKLSNPDGVFDLVTKSECLQGFYM 281

Query: 449 FHPWDEKVHRRHGIVLWVPHNIEELIKLA 477
                 +        +    +I  +  LA
Sbjct: 282 LRNLIRRNDEVLLDDIRFLLSIPGIKALA 310

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 39/214 (18%)

Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGV 292
           A R+  AA +G L+ L  L               +  +    A  RG+ ++  FL+   V
Sbjct: 166 AFRL--AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 293 DINIKDKFG------------------NTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAG 333
            +   +                        + +A K  + DGV  L+ K           
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF---- 279

Query: 334 SFLCTAVARGDSDFLKRV--------LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
             L   + R D   L  +        +      ++   D    L +A   G      LLL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 386 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
              + +                 G  +L  +  +
Sbjct: 340 SIPSVLALTK---ANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 30/154 (19%)

Query: 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYD--------------------GR 269
                LA        +G+ Y    + R      +                        G 
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

Query: 270 SPLHLATSRGYED--------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
             L     R  E         +++  I+            N  L  A++ G+ G  +LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 322 KEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
              + L +  A ++       G  D L+ V    
Sbjct: 340 SIPSVLALTKANNYYI-NETGGRLD-LRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 229 GKHEAELALRVNSAAYHGDLYQLKGL--IRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286
           G +     +R N      D+  L  +  I+A A       D    L LA   G +     
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
           L+     + +               G   + ++ ++    
Sbjct: 338 LLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   +V V ++G
Sbjct: 25  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG---KVEVTKEG 81

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
               +  + P   FGE++IL N  +  TV      +L  ID+Q F  I+ 
Sbjct: 82  --VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMM 129

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHG---VLEEVGV 140
            +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G   +    G 
Sbjct: 7   RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGG 66

Query: 141 GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDG 200
               +  TV  + P + FG  S++       +    +  R++ I+      + E     G
Sbjct: 67  AGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALG 126

Query: 201 RKVLTNLLE 209
           + ++ N+  
Sbjct: 127 QVLMNNVAA 135

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 14  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
            E+ +      ++F E  +  + P    T      S+L R   +++   L+        +
Sbjct: 74  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133

Query: 204 LTNLLEGKESNLRLKQLKSDITFHIGKHEAELALR 238
           L  L        RL Q   +I          L+L+
Sbjct: 134 LAKLST------RLHQRIDEI--------ETLSLK 154

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G   E+ V  + 
Sbjct: 40  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG---EMDVYVNN 96

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
             E  + +    SFGE++++   P+  TV      +L  ID+ S+  IL 
Sbjct: 97  --EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILM 144

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 82.9 bits (204), Expect = 3e-17
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G   ++ V  DG
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGT-FDIYVKCDG 205

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
               V       SFGE++++ N P+  T+       L  +D+ +F  I+       RK+ 
Sbjct: 206 VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 265

Query: 205 TNLLE 209
            + +E
Sbjct: 266 ESFIE 270

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 79.8 bits (196), Expect = 3e-16
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE---- 136
           Y  +IE +   K        ++V  +  + +  GE I+ QG++ D  + V  G ++    
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 137 --EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
                  E+     +++      FGE++++ N P+  +       + L +D Q+F  +L
Sbjct: 325 RKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 20/189 (10%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           +     ++ + R   + +     +   +              YM +++ V  F+    E 
Sbjct: 126 TLVNVKLWAIDRQCFQTIMMRTGLIKHTE-------------YMEFLKSVPTFQSLPEEI 172

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET-VSQLQPNSS 157
           ++++   + E  +  GE I+ QG   D  + +  G +          +   +  L     
Sbjct: 173 LSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232

Query: 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRL 217
           FGE ++     +   V   E    L ID+ SF +++         V     E  E+  + 
Sbjct: 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGL----DDVSNKAYEDAEA--KA 286

Query: 218 KQLKSDITF 226
           K       F
Sbjct: 287 KYEAEAAFF 295

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 75.3 bits (185), Expect = 3e-15
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   +V V ++G
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG---KVEVTKEG 97

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
               +  + P   FGE++IL N  +  TV      +L  ID+Q F  I+           
Sbjct: 98  --VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 155

Query: 205 TNLLE 209
              L+
Sbjct: 156 MEFLK 160

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 80.4 bits (198), Expect = 5e-17
 Identities = 32/181 (17%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           ++T   ++ + R + R +                     + +Y  ++ KVS+ +      
Sbjct: 126 AKTNVKLWGIDRDSYRRILMG-------------STLRKRKMYEEFLSKVSILESLDKWE 172

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE-EVGVGEDGSEETVSQLQPNSS 157
              +   +    F  G+ I+ QG   D+ + +  G         E+     V +L P+  
Sbjct: 173 RLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232

Query: 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRL 217
           FGE+++L N P+  TV      + +++D+  F  +L         +L   ++   S + L
Sbjct: 233 FGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPC----SDILKRNIQQYNSFVSL 288

Query: 218 K 218
            
Sbjct: 289 S 289

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G   E+ V  + 
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG---EMDVYVNN 97

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
             E  + +    SFGE++++   P+  TV      +L  ID+ S+  IL       RK+ 
Sbjct: 98  --EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155

Query: 205 TNLL 208
              L
Sbjct: 156 EEFL 159

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 84  YIEKVSLFKGCSSEFINQIV-IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE 142
           ++ ++  F   +     ++  + + E     G +I+E G  +D  Y + +G    V +  
Sbjct: 17  FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG---TVEISH 73

Query: 143 DGSEETVSQLQPNSSFGEVSILCNIPQPYTV-CICELSRLLRIDKQSFTNIL 193
                 V  L   +SFG    L        V    +  + + I +Q +  IL
Sbjct: 74  PD--GKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 14/156 (8%)

Query: 39  SQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEF 98
           ++T   ++ + R + R +                     + +Y  ++ KVS+ +      
Sbjct: 217 AKTDLKLWGIDRDSYRRILM-------------GSTLRKRKMYEEFLSKVSILESLEKWE 263

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE-TVSQLQPNSS 157
              +   +    F  GE I+ QG   D  Y +  G    +       E   V +L P+  
Sbjct: 264 RLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323

Query: 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
           FGE+++L N P+  TV      + +++D+  F  +L
Sbjct: 324 FGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           I K  LF        + I   +     + GE +++QGN  D  Y V  G   EV V  +G
Sbjct: 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQG---EVDVYVNG 188

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
             E V+ +    SFGE++++   P+  TV      +L  ID+ S+  IL       RK+ 
Sbjct: 189 --EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMY 246

Query: 205 TNLLE 209
              L 
Sbjct: 247 EEFLS 251

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 25/115 (21%), Positives = 51/115 (44%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
           +  +++  LF+    + + + +  V E  F P E+++EQ    + L+ V  GV+    V 
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
             G E  +  +      GE ++L +  +  +V      R L + ++ F  IL  +
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRH 119

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 24/124 (19%), Positives = 52/124 (41%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
            + +  +F+G     I  +  ++    F  G  +  +G   D+LY +  G ++      D
Sbjct: 7   ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
           G E  ++ + P+  FGE+SI    P+  +       R + +D+ +  + +        ++
Sbjct: 67  GRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQL 126

Query: 204 LTNL 207
           L  L
Sbjct: 127 LRVL 130

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 73.0 bits (180), Expect = 5e-15
 Identities = 25/112 (22%), Positives = 49/112 (43%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           ++   LF G + E ++  +       +  G+ I  QG++   LY V  G +        G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
            E T++ L P   FGE+S+L    +  +    E + LL + ++ +  ++   
Sbjct: 61  QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRL 112

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 73.9 bits (181), Expect = 1e-14
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 140
            +  +  + +F+GC +E +  +   V       G+V++ QG        +  G  E   V
Sbjct: 11  RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHV 70

Query: 141 GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCD 199
           G+DG    +++  P    GE+++L + P+  TV   E        + +F  ++ I    
Sbjct: 71  GDDG-VAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVG 128

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 307 EAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRV---LSNG 355
           EA+K            +G  L          +   + L  AV   D   L  V   + N 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195

Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
            +   +     T LH           KLLL   AS+   +  G TPLD  +   +++  +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 416 LLEDAECTQLSEF 428
           LL  A   + +  
Sbjct: 256 LLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 40/173 (23%)

Query: 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY------DGRSPLHLATSRG---Y 280
              A     +  A    D++ L      G D  +            + LHLA        
Sbjct: 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 184

Query: 281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAV 340
             I  FL+Q   +++ +   G+T L       +     LL++                  
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR------------------ 226

Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
                                +    TPL +A         +LL +A +  F 
Sbjct: 227 -------------GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 40/162 (24%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDY------DGRSPLHLATSRGYED---ITLFLIQKGV 292
           A  + DL  +      G D  +              LHLA     +    +  F+IQ G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
            ++ K   GNT L  A          LL+K  A                           
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--------------------------- 250

Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
                  + +    T L +A  +      +LL +A A  F  
Sbjct: 251 ----LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS------DFLKRVLSNGVDP 358
           +LEA   G D    L   +  +         L  AV   +       DF+   + NG   
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQA----PEELVLHLAVKVANQASLPLVDFI---IQNGGHL 219

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
            ++  D  T LH AA        KLLL+  A V T +  G T LD  R   +K   +LLE
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

Query: 419 DAECTQLSEF 428
            A+    +  
Sbjct: 280 QAQAGTFAFP 289

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 8/141 (5%)

Query: 183 RIDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVN-S 241
           R   +       I   D   VL     G++           +     +   EL L +   
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFG-------QPLPGPDAQAPEELVLHLAVK 199

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
            A    L  +  +I+ G   +    DG + LH A      D    L++    +   ++ G
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 259

Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
            T L  A K  H     LL +
Sbjct: 260 ETALDIARKKHHKECEELLEQ 280

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 11  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
            E+ +      ++F E  +  + P    T      S+L R   +++   L+        +
Sbjct: 71  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130

Query: 204 LTNL 207
           L  L
Sbjct: 131 LAKL 134

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
                L +    + ++ ++ +     +  GE +  Q      ++ V  G ++   +   G
Sbjct: 13  ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
           SE  VS      SFGE   L N P P +        ++ I    F +++         +L
Sbjct: 73  SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISIL 132

Query: 205 TNLLEGKESNLRLKQLKSDIT 225
                       L  L + + 
Sbjct: 133 ATTFG------HLHSLVAQLE 147

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
           M  I  + L K  +   +   +   H   +     ++ QG   + LY++  G +  +   
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 142 EDGSEETVSQLQPNSSFGEVSILCN-IPQPYTVCICELSRLLRIDKQSFTNILEIY 196
           E+G E  +S L      GE+ +      +   V       +  I  + F  ++++ 
Sbjct: 105 EEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVN 160

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 81  YMPYIEKVSLFKGCSSEFINQIV--IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEV 138
               + ++ LF+G   E    I+  +++H      GE I++ GN   QL F+  G +  V
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 139 GVGEDGSEETVSQLQPNSSFGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYF 197
              ++     + Q++        S+         +         + I K    + L  Y 
Sbjct: 76  TNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY- 134

Query: 198 CDGRKVLTNLLEGKESNLRLKQLKSDI 224
                   N +     + R + L S +
Sbjct: 135 ---DIFRLNYM--NIVSNRAQNLYSRL 156

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 25/141 (17%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           +    +        + +++       F  GE++  Q + ++ +  +  G L+   V E+G
Sbjct: 1   MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
               + +++P        I  + P+ P  V   E S++L I K+ F ++L       R++
Sbjct: 61  KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKD----REL 116

Query: 204 LTNLLEGKESNLRLKQLKSDI 224
           L   L  K+ +   + +   +
Sbjct: 117 LLFFL--KDVSEHFRVVSEKL 135

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 212 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
            +        +D+ +  G  +    L    A     L   + L++ GA+ N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
           LH AT  G+  +    +++G D+  +D  G  PL  A++  +  + +LL           
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331

Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRT 367
            G            DF      +    S R +D  T
Sbjct: 332 QGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.0 bits (160), Expect = 8e-12
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 305 LLEAIKCGHDGVTSLLVKEGASLNV----DDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
              +         +  +  GA +N      D  + L  A A       + +L NG + + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
            D   R PLH A   G   +A L L+ GA +  +D  G  PL       N +++ LL  A
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 421 ECTQLSEFHYCSQGMIDKMH 440
           +     E         D+ +
Sbjct: 324 KMR---EAEAAQGQAGDETY 340

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 88  VSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 147
           + L K  +   +   +   H   +     ++ QG   + LY++  G +  +   E+G E 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 148 TVSQLQPNSSFGEVSILCN-IPQPYTVCICELSRLLRIDKQSFTNILEIY 196
            +S L      GE+ +      +   V       +  I  + F  ++++ 
Sbjct: 61  ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVN 110

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 69.6 bits (169), Expect = 7e-13
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 85  IEKVSLFKGCSSEFINQIV-IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
           +  +      S+    ++  + + E     G V+  QG      Y +  G    V V   
Sbjct: 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG---SVNV-VI 394

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYTV-CICELSRLLRIDKQSFTNILE 194
             +  V  L     FG+++++ + P+  ++    +    LR+DK+ F  IL 
Sbjct: 395 YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILR 446

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 67.3 bits (163), Expect = 4e-12
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE--EVGVG 141
            ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L+       
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102

Query: 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
                 T+  L   ++FGE SIL N P+  T+   E S LLRI+++ F  + E Y
Sbjct: 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 241 SAAYHGDLYQLKGLIRAGADPNKT------DYDGRSPLHLA---TSRGYEDITLFLIQKG 291
           +A  + DL  +      G D  +              LHLA    ++    +  F+IQ G
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197

Query: 292 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
             ++ K   GNT L  A          LL+K  A +   +        +AR
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 195 IYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGL 254
           I   D   VL     G++    L    +     +  H   LA++    A    L  +  +
Sbjct: 140 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH---LAVK---VANQASLPLVDFI 193

Query: 255 IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314
           I+ G   +    DG + LH A      D    L++    +   ++ G T L  A K  H 
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 253

Query: 315 GVTSLLVK 322
               LL +
Sbjct: 254 ECEELLEQ 261

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 3/113 (2%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
           +   +        E +           F  G  ++  G  +  + F+  G ++   + ED
Sbjct: 10  FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
           GSE+ +     NS  G++               E +R     ++S   +    
Sbjct: 70  GSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWFSEKSLRTVFRTD 119

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 15/107 (14%), Positives = 39/107 (36%)

Query: 88  VSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 147
             ++   + E    +   +          +  +G++ + L+++  G ++ +  G  G   
Sbjct: 15  RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74

Query: 148 TVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
               ++P   FG            T    E S++L I  ++   +L+
Sbjct: 75  ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLK 121

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 2/115 (1%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
           M +     L+   ++     I   +  +    G +I         L  V  G L    + 
Sbjct: 2   MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 142 EDGSEETVSQLQPNSS--FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
           ++G E T+ +L            I+ +I    T+   + + L  I  + +  I++
Sbjct: 62  DEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMK 116

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
            +   +      +  I + +   H   +     +   G+    LY+V  G +  +   +D
Sbjct: 12  TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDD 71

Query: 144 GSEETVSQLQPNSSFGEVSILC-NIPQPYTVCICELSRLLRIDKQSFTNILE 194
             E  +         GE+ +   +  +   +       L  I  +    + +
Sbjct: 72  DRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQ 123

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 89  SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 148
           ++F+  ++     +V       F   + I   G+  +++YF+  G ++   V E G E T
Sbjct: 31  NVFRQMATGAFPPVVET-----FERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT 85

Query: 149 VSQLQPNSSFGEVSILCNIPQPYTVCIC--ELSRLLRIDKQSFTNILEIY 196
           V+ L+ NS FG +S+L                  LL    +     L+  
Sbjct: 86  VALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKEN 135

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
            +   +L +  +SE  + ++    E+ +    ++       + ++ V  G +  V +  +
Sbjct: 5   RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRV-RVYLAYE 63

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV 203
             E T++ L+    F   +          +   E + +L  D ++F NI+  +      +
Sbjct: 64  DKEFTLAILEAGDIFCTHT-------RAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNM 116

Query: 204 LTNL-LEGKESNLRLKQL 220
           +  L    K S   +  L
Sbjct: 117 VKVLGDLLKNSLTIINGL 134

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 77  SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 136
           S  ++   I  +  F   + E    +      +     E +++ G +    YFV  G L 
Sbjct: 1   SNAMHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLR 60

Query: 137 EVGVGEDGSEETVSQLQPNSSFGEV-SILCNIPQPYTVCICELSRLLRIDKQSFTNILEI 195
              + E G E+T      N    +  +     P  + +   E   LL I      N+ E 
Sbjct: 61  LFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFER 120

Query: 196 Y--FCD-GRKVLTNLLEGKESNLRLKQLKS 222
                   R V        +   + + + S
Sbjct: 121 IPALERYFRLVYQKSFAAAQLRSKFQHMYS 150

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 97  EFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS 156
           +++    I+  +  F   E+I  Q +  +   F+  G+ +   + E+G+   +   +   
Sbjct: 11  KYLETNGIKPKQ--FHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAF 68

Query: 157 SFGEVSILCNIPQPY--TVCICELSRLLRIDKQSFTNILE 194
                 I       Y     I E +    I       +L 
Sbjct: 69  VIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLS 108

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 95  SSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 154
             + +++++   H   +     I+  G+  + L+F+  G +  +   +DG E  +  L  
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 155 NSSFGEVSILCNI----PQPYTVCICELSRLLRIDKQSFTNILE 194
              FGE+ +         +   V       +  I    F  + +
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQ 105

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 10/115 (8%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
           MP   + ++     S            +    G ++       + ++ V  G L  V + 
Sbjct: 1   MP--PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRL-RVYLV 57

Query: 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
            +  E ++  L     F   S          V   E + +   D ++F   L+  
Sbjct: 58  GEEREISLFYLTSGDMFCMHS-------GCLVEATERTEVRFADIRTFEQKLQTC 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 87/600 (14%), Positives = 177/600 (29%), Gaps = 173/600 (28%)

Query: 26  VDIIMQFFLAYRDSQTY----CLVYKLTRIALRYLKSSFIID---LLSCLPWDVIYKISQ 78
           +D I+        S T      L+ K   +  ++++    I+   L+S  P     +   
Sbjct: 51  IDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPS 106

Query: 79  TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFL--------PGEVIMEQG--------- 121
            +   YIE+       +  F    V R+     L        P + ++  G         
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 122 --NVVDQLYFVCH---GVLEEVGVGEDGSEETV--------SQLQPNSSFGEVSILCNIP 168
             +V       C     +   + +    S ETV         Q+ PN +        NI 
Sbjct: 167 ALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIK 224

Query: 169 QPYTVCICELSRLLRIDKQSFTNILEI-----------YF---CDGRKVL--------TN 206
                   EL RLL+   + + N L +            F   C   K+L        T+
Sbjct: 225 LRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTD 279

Query: 207 LLEG-KESNLRLKQLKSDITFHIGKHEAE--LALRVNSAAYHGDL-YQLK-------GLI 255
            L     +++ L      +T      E +  L   ++      DL  ++         +I
Sbjct: 280 FLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSII 333

Query: 256 RAGA----DPNKTDY---DGRSPLH--LATS----------RGYEDITLFLIQKGVDINI 296
                        D         L   + +S          + ++ +++F       I  
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPT 389

Query: 297 K-------DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL- 348
                   D   +  ++   K  H    SL+ K+     +     +L   V   +   L 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKL-HK--YSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 349 KRVLSNGVDPSSRDYDHRTPL--------HVAASEGLYLMAKLLLEAGASVFTK---D-R 396
           + ++ +   P + D D   P         H+      + +  +      ++F     D R
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMVFLDFR 501

Query: 397 WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV 456
           +             K  I+    A           S  +++ +               K 
Sbjct: 502 F----------LEQK--IRHDSTAWN--------ASGSILNTLQ------------QLKF 529

Query: 457 HRRHGIVLWVPHNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLISETQ 516
           ++ + I    P   E L+   +D L   + + I S+    +L + ++ + + ++  +  Q
Sbjct: 530 YKPY-ICDNDPKY-ERLVNAILDFLPKIEENLICSKY-TDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 68/444 (15%), Positives = 123/444 (27%), Gaps = 144/444 (32%)

Query: 96  SEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETV-SQLQP 154
            +    I+ +  EE     + I+   + V     +    L      E+  ++ V   L+ 
Sbjct: 39  QDMPKSILSK--EEI----DHIIMSKDAVSGTLRL-FWTLLSKQ--EEMVQKFVEEVLRI 89

Query: 155 NSSF--GEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK 211
           N  F    +      P     + I +  RL   D Q F      Y     +    L +  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAK----YNVSRLQPYLKLRQA- 143

Query: 212 ESNLRLKQLKSD--ITFH----IGKHE-AELALR--------------VNSAAYHGD--- 247
                L +L+    +        GK   A                   +N    +     
Sbjct: 144 -----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 248 LYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 306
           L  L+ L+    DPN T   D  S + L       ++   L  K                
Sbjct: 199 LEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---------------- 241

Query: 307 EAIKCGHDGVTSLLVKEGASL-NVDDAG---SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
                       LLV     L NV +A    +F          +   ++L   +  ++R 
Sbjct: 242 -------PYENCLLV-----LLNVQNAKAWNAF----------NLSCKIL---L--TTRF 274

Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422
                   V           + L+  +   T D        E      K+L+    D   
Sbjct: 275 KQ------VTDFLSAATTTHISLDHHSMTLTPD--------EV-----KSLLLKYLDCRP 315

Query: 423 TQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLW--VPH----NIEELIKL 476
             L          +   +PR+ ++       E +  R G+  W    H     +  +I+ 
Sbjct: 316 QDLPR-------EVLTTNPRRLSIIA-----ESI--RDGLATWDNWKHVNCDKLTTIIES 361

Query: 477 AVDKLDFPDGH-------SILSED 493
           +++ L+ P  +       S+    
Sbjct: 362 SLNVLE-PAEYRKMFDRLSVFPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 78/435 (17%), Positives = 124/435 (28%), Gaps = 152/435 (34%)

Query: 7   RGLPENLSILDIAGQIAFLVDI----IMQFFLAYRDSQTYC--LVYKLTRIALRYLKSSF 60
           +     L +L          ++        F    +    C  L+   TR          
Sbjct: 241 KPYENCLLVLL---------NVQNAKAWNAF----NLS--CKILL--TTR-------FKQ 276

Query: 61  IIDLLSCLPWDVIY--KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLP----- 113
           + D LS      I     S TL     E  SL      ++++    R  +   LP     
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPD--EVKSLL----LKYLD---CRPQD---LPREVLT 324

Query: 114 ---------GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN---SSFGEV 161
                     E I +     D    V    L  +       E +++ L+P      F  +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEYRKMFDRL 378

Query: 162 SIL---CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK----VLTNLLEGKESN 214
           S+     +IP                     T +L + + D  K    V+ N L     +
Sbjct: 379 SVFPPSAHIP---------------------TILLSLIWFDVIKSDVMVVVNKLHKY--S 415

Query: 215 LRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQL-KGLIRAGADPNKTDYDGRSPL- 272
           L  KQ K   T  I      L L+V       + Y L + ++     P   D D   P  
Sbjct: 416 LVEKQPKES-TISI--PSIYLELKVKLE----NEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 273 -----------HLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
                      HL      E +TLF          +  F +   LE  K  HD   +   
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLF----------RMVFLDFRFLEQ-KIRHDS--TAWN 515

Query: 322 KEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPL 369
             G+ LN             D+   +    +     DFL ++  N +        +   L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKY--ERLVNAILDFLPKIEENLI-----CSKYTDLL 568

Query: 370 HVA---ASEGLYLMA 381
            +A     E ++  A
Sbjct: 569 RIALMAEDEAIFEEA 583

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 82  MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141
              +  V LF+      + +IV  +       G VI   G   D+++FV  G +      
Sbjct: 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 286

Query: 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
                    +L P + FGE++++   P+  TV       LL +    F  +  
Sbjct: 287 P-------VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCS 332

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 111 FLPGEVIMEQGN--VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIP 168
           F  G+VI+  G     D+ Y V  G++    V E+G+  T+  ++P   FGE ++     
Sbjct: 10  FKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQ-E 68

Query: 169 QPYTVCICELSRLLRIDKQSFTNIL 193
           + Y        RL  + +     +L
Sbjct: 69  RIYFAEAATDVRLEPLPENPDPELL 93

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
            ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L+       
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102

Query: 144 GSEE--TVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL---EIYFC 198
             ++  T+  L   ++FGE SIL N P+  T+   E S LLRI+++ F  +      Y  
Sbjct: 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161

Query: 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHI 228
                   ++E   +N R+   ++  +  I
Sbjct: 162 GLLAPPYGVMETGSNNDRIPDKENVPSEKI 191

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 170
           F   E I  +G     LY +  G++  V +  DG   T+  + P   FGE + L      
Sbjct: 4   FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEA-LEGKAYR 62

Query: 171 YTVCICELSRLLRIDKQSF 189
           YT      + +  ++ ++ 
Sbjct: 63  YTAEAMTEAVVQGLEPRAM 81

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 376
           L     + +   LK  +   V P S +    T ++   S G
Sbjct: 486 LDYESLQQELA-LKETVWKKVSPESNEDISTTVVYRMESLG 525

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 17/81 (20%)

Query: 217 LKQLKSDITFHI----------------GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD 260
              L S   FH                 G  +      ++  +   +L  LK  +     
Sbjct: 448 CHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRHSFGPLDYESLQQEL-ALKETVWKKVS 506

Query: 261 PNKTDYDGRSPLHLATSRGYE 281
           P   +    + ++   S G +
Sbjct: 507 PESNEDISTTVVYRMESLGEK 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	516
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.77
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.77
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.76
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.76
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.75
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.75
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.74
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.71
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.7
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.7
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.7
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.69
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.69
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.69
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.69
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.68
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.66
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.66
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.66
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.66
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.64
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.64
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.63
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.62
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.62
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.6
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.6
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.59
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.59
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.56
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.56
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.56
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.56
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.56
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.56
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.55
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.54
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.54
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.54
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.53
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.52
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.5
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.47
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.43
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.42
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.4
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.35
3b02_A	195	Transcriptional regulator, CRP family; structural	99.35
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.25
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.22
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	96.56
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	93.11
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	89.35
2dnf_A	108	Doublecortin domain-containing protein 2; structur	85.39
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	81.98

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=305.41  Aligned_cols=212  Identities=25%  Similarity=0.251  Sum_probs=198.0

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                      ....+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcC-CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      |+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999998854 47799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCc
Q 010168          387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE  454 (516)
Q Consensus       387 ~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (516)
                      +|++++. +..|+||||+|+..|+.+++++|+++|++..              .....+.+|+|.+..
T Consensus       212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ--------------AKNAEGKRPVELVPP  264 (285)
T ss_dssp             TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCCTTSCCGGGGSCT
T ss_pred             CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------CcCCCCCCHHHHhcC
Confidence            9999995 8899999999999999999999999998543              334456689999873

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-38  Score=296.11  Aligned_cols=217  Identities=24%  Similarity=0.264  Sum_probs=202.5

Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHH
Q 010168          227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  306 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~  306 (516)
                      +++..+..|.||||.||..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHcC-CCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 010168          307 EAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       307 ~A~~~~~~~~v~~Ll~~g-~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  383 (516)
                      +|+..|+.+++++|+++| .+++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999998 7776644  6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       384 Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|++..              .+...+.+|+|.+...++
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT--------------LKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--------------CCCTTSCCHHHHSCTTCH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC--------------ccCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998543              334556789999988887

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.9e-39  Score=307.24  Aligned_cols=214  Identities=23%  Similarity=0.237  Sum_probs=186.1

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      +..+..|.||||+||..|+.+++++|++.|++   ++.++..|+||||+||..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45667899999999999999999999999988   789999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCC-----------------------------------------------CCc--CCcchHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFL  336 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~-----------------------------------------------~~~--~~~~~~l  336 (516)
                      |+|+..|+.+++++|+++|++                                               ++.  ..+.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998865                                               222  3467999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          337 CTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       337 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                      |+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999999999854 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccCccccccccCccccccCCCcceeecCCCCCCccc
Q 010168          416 LLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV  456 (516)
Q Consensus       416 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (516)
                      +|+++|++..              .....+.+|++.+....
T Consensus       243 ~Ll~~ga~~~--------------~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          243 LLRAHGAPEP--------------EDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHTTCCCC--------------CCC--------------
T ss_pred             HHHHcCCCcC--------------cCCCcccccccccCCcc
Confidence            9999999643              34455667777765433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.3e-38  Score=296.36  Aligned_cols=215  Identities=20%  Similarity=0.226  Sum_probs=196.9

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  304 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tp  304 (516)
                      +..+..|.||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            4556789999999999999999999997    799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHcCC----CCCcC--CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhCh
Q 010168          305 LLEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGL  377 (516)
Q Consensus       305 L~~A~~~~~~~~v~~Ll~~g~----~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~  377 (516)
                      ||+|+..|+.+++++|+++++    +++..  .+.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    55554  47799999999999999999999999999998 889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       378 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..              .....+.+|+|.+...++
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--------------LKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--------------CCCTTSCCTTTTCSSHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--------------CcCCCCCCHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999998643              234456799999988777

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.3e-39  Score=302.81  Aligned_cols=189  Identities=29%  Similarity=0.339  Sum_probs=114.5

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCCCCCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpL~~A~~  310 (516)
                      +..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            4455566666666666666666666666666666666666666666666666666666554 555666666666666666


Q ss_pred             cCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          311 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      .|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            666666666666666555443  445666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010168          389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  420 (516)
Q Consensus       389 ~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~  420 (516)
                      ++++.+|..|+||+++|+.+|+.+++++|...
T Consensus       214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             CCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            66666666666666666666666666666543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.9e-38  Score=291.74  Aligned_cols=220  Identities=25%  Similarity=0.344  Sum_probs=196.7

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED  282 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  282 (516)
                      .+..+...+........+..... .....+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+
T Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   87 (231)
T 3aji_A            9 MICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE   87 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH
Confidence            34444444444333333332222 23556677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 010168          283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSS  360 (516)
Q Consensus       283 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~  360 (516)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.
T Consensus        88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  167 (231)
T 3aji_A           88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI  167 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Confidence            9999999999999999999999999999999999999999999998765  67999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       361 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                      +|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|+++|++
T Consensus       168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999999999999999999999999999998874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.2e-37  Score=286.30  Aligned_cols=195  Identities=28%  Similarity=0.334  Sum_probs=187.8

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCCCCCCChHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  309 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpL~~A~  309 (516)
                      .+..|.||||+||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++++ +++..+..|.||||+|+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            36678999999999999999999999999999999999999999999999999999999987 89999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          310 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999998765  67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          388 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       388 g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      |++++.+|..|.||+++|+..|+.+++++|+++|+...
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999998654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-37  Score=294.13  Aligned_cols=200  Identities=26%  Similarity=0.280  Sum_probs=158.4

Q ss_pred             cchhhhHHHHHHHHhcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 010168          230 KHEAELALRVNSAAYHG-------------DLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDIN  295 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  295 (516)
                      ..+..|.||||+|+..|             +.+++++|++.|++++. .|..|+||||+|+..|+.+++++|+++|++++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   84 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN   84 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            45667999999999987             89999999999999865 58999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCChHHHHHHHHcCC-CCCcC--CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 010168          296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA  372 (516)
Q Consensus       296 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~-~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  372 (516)
                      .+|..|.||||+|+..|+.+++++|+++++ +++..  .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999987 66664  477999999999999999999999999999999999999999


Q ss_pred             HHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccccc
Q 010168          373 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH  429 (516)
Q Consensus       373 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~  429 (516)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++......
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  221 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH  221 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            999999999999999999999999999999999999999999999999998766544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.3e-38  Score=312.32  Aligned_cols=267  Identities=17%  Similarity=0.130  Sum_probs=205.7

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+...+..++..+.......++....  ..+..+..|.||||+||..|+.+++++|++.|++++.  .+|+||||+|+..
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~   94 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGV--SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA   94 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc
Confidence            34556666666666555555554433  2344555677777777777777777777777775543  4677777777777


Q ss_pred             CCHHHHHHHHHc----CCCCcC-----------------CCCCCChHHHHHHHcC--ChHHHHHHHHcCCCCCcCC--cc
Q 010168          279 GYEDITLFLIQK----GVDINI-----------------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AG  333 (516)
Q Consensus       279 g~~~~v~~Ll~~----g~~~~~-----------------~d~~g~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~~  333 (516)
                      |+.+++++|+++    |++++.                 .|..|.||||+|+..|  +.+++++|+++|++++..+  +.
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~  174 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE  174 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence            777777777776    666665                 7888999999999999  9999999999999988765  67


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 010168          334 SFLCTAVARGDSDFLKRVLSNGVD-----PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC  408 (516)
Q Consensus       334 ~~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  408 (516)
                      ||||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..
T Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            999999999999999999999988     999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhhh
Q 010168          409 GNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDK  480 (516)
Q Consensus       409 ~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  480 (516)
                      |+.+++++|+++|++........  .......+...++++++.++..++         ...+..++..+.+.
T Consensus       255 g~~~~v~~Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aa~~~~---------~~~v~~ll~~~~~~  315 (364)
T 3ljn_A          255 AMVLLTKELLQKTDVFLIQACPY--HNGTTVLPDRVVWLDFVPAAADPS---------KQEVLQLLQEKLDE  315 (364)
T ss_dssp             CCHHHHHHHHHHSCHHHHHTCTT--BSSSSBCGGGCCCCTTSCSSCCHH---------HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCchhhhcCcc--cCcccccccccccccchhhhhccC---------HHHHHHHHHHHHHH
Confidence            99999999999988753322111  111233455667788988888887         44455555554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=298.28  Aligned_cols=255  Identities=23%  Similarity=0.254  Sum_probs=217.7

Q ss_pred             hhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 010168          201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY  280 (516)
Q Consensus       201 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  280 (516)
                      ...+..++..+.......++......+. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            3444555555555444444444433322 225668899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC------------CcchHHHHHHHcCCHHHH
Q 010168          281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDSDFL  348 (516)
Q Consensus       281 ~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~l~~A~~~~~~~~v  348 (516)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..            .+.+|||+|+..|+.+++
T Consensus        85 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  164 (285)
T 1wdy_A           85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999998854            467999999999999999


Q ss_pred             HHHHHC-CCCCCCCCCCCCcHHHHHHHhCh----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-ccc
Q 010168          349 KRVLSN-GVDPSSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AEC  422 (516)
Q Consensus       349 ~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~-~~~  422 (516)
                      ++|+++ |++++..+..|+||||+|+..|+    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|+
T Consensus       165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~  244 (285)
T 1wdy_A          165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Confidence            999987 99999999999999999999999    999999999999999999999999999999999999999999 777


Q ss_pred             CccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhh
Q 010168          423 TQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  479 (516)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  479 (516)
                      +..              .....+.+|+|.+...++         .+.++-|++.|++
T Consensus       245 ~~~--------------~~~~~g~t~l~~A~~~~~---------~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          245 EIN--------------DTDSDGKTALLLAVELKL---------KKIAELLCKRGAS  278 (285)
T ss_dssp             CTT--------------CCCTTSCCHHHHHHHTTC---------HHHHHHHHHHSSC
T ss_pred             Ccc--------------ccCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCC
Confidence            533              233456689999888877         5666777766544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-37  Score=306.96  Aligned_cols=227  Identities=25%  Similarity=0.284  Sum_probs=202.3

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+...+..++..+........+. ......+..+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCC-TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHH-hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence            34455556665555544433333 33445566778899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC----------------------------
Q 010168          279 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------------------  330 (516)
Q Consensus       279 g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~----------------------------  330 (516)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..                            
T Consensus       102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~  181 (351)
T 3utm_A          102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS  181 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence            9999999999999999999999999999999999999999999999987642                            


Q ss_pred             ----------------------------CcchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHH
Q 010168          331 ----------------------------DAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL  379 (516)
Q Consensus       331 ----------------------------~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  379 (516)
                                                  .+.||||+|+..   +..+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  261 (351)
T 3utm_A          182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND  261 (351)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH
Confidence                                        356899999999   5589999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       380 ~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++..
T Consensus       262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999996543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-38  Score=298.30  Aligned_cols=214  Identities=22%  Similarity=0.251  Sum_probs=167.7

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcCCCCC
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKGLIRAGAD--------PNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKF  300 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~d~~  300 (516)
                      ..+..+.++|+.||..|+.++|++|++.|++        ++..+..|.||||+|+..++. .++++|+++|+++|.+|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            3455678999999999999999999998875        456678899999999988775 5889999999999999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChH
Q 010168          301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY  378 (516)
Q Consensus       301 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  378 (516)
                      |+||||+|+..|+.+++++|++.|++++..+  +.||++.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999999988754  67999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          379 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       379 ~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      ++|++|+++|+++|.++..|+||||+|+..|+.+++++|+++|++...              ....+.+|+|.|..+++
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~--------------~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV--------------LNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC--------------CCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999996533              33456689999876554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-38  Score=298.29  Aligned_cols=229  Identities=23%  Similarity=0.299  Sum_probs=165.3

Q ss_pred             chhhHHHhhhccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHH-HHHHHHHcCCCCCCCCC
Q 010168          188 SFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLY-QLKGLIRAGADPNKTDY  266 (516)
Q Consensus       188 ~~~~ll~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~  266 (516)
                      ....++.........+++.+++.......      .........+..+.||||.|+..++.+ +++.|++.|+++|.+|.
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLE------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTCCCT
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccc------cccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            33445555555555555555544332111      111223455677899999999988765 78999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCC
Q 010168          267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD  344 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~  344 (516)
                      +|+||||+||..|+.++|++|+++|++++..+..|.||+|+|+..++.+++++|+++|++++..+  |.||||+|+..|+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999865  6799999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHccc
Q 010168          345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAEC  422 (516)
Q Consensus       345 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~-~~~v~~L~~~~~  422 (516)
                      .+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.+++ .+++++|.+.++
T Consensus       165 ~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             HHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            999999999999999999999999999999999999999999999999999999999999998775 345555555444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-37  Score=291.23  Aligned_cols=226  Identities=20%  Similarity=0.216  Sum_probs=197.4

Q ss_pred             hccchhhhhhhhhccchhhhhhhhc--cccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 010168          197 FCDGRKVLTNLLEGKESNLRLKQLK--SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHL  274 (516)
Q Consensus       197 ~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~  274 (516)
                      ...+...+..++..+.......++.  .......+..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   85 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            3455666666666665544443332  12233445667789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCC----CCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC---cchHHHHHHHcCCHHH
Q 010168          275 ATSRGYEDITLFLIQKGV----DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSDF  347 (516)
Q Consensus       275 A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~  347 (516)
                      |+..|+.+++++|+++++    +++..|..|.||||+|+..|+.+++++|+++|++++..+   +.||||+|+..|+.++
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence            999999999999999987    889999999999999999999999999999999998755   7799999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      +++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.+.++
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.6e-37  Score=285.16  Aligned_cols=209  Identities=30%  Similarity=0.352  Sum_probs=193.9

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  313 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~  313 (516)
                      +.+|||.|+..|+.+.++.|++.+.. ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            56899999999999999999988754 67889999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          314 DGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      .+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            999999999999998755  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       392 ~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +.+|..|+||||+|+..|+.+++++|+++|++..              .+...+.+|+|.+...++
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY--------------IENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCTTSCCHHHHSCHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHhhHH
Confidence            9999999999999999999999999999998643              234456688888876555

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-36  Score=282.56  Aligned_cols=207  Identities=25%  Similarity=0.243  Sum_probs=188.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcC-CCCCCChHHHHHHH
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK  310 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~~~~~-~d~~g~tpL~~A~~  310 (516)
                      |.||||.||..|+.++++.|++.|+++. ..|..|+||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5789999999999999999999998865 48899999999999999999999999999  55666 88999999999999


Q ss_pred             cCChHHHHHHHHcC--CCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          311 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g--~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      .|+.+++++|+++|  ++++..+  +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  7776644  6799999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcccCccccccccCccccccCCCcceeecCCCCCCcc
Q 010168          387 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK  455 (516)
Q Consensus       387 ~g-~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (516)
                      +| ++++.+|..|+||||+|+..|+.+++++|+ +.|++...              +...+.+|+|.+...
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~--------------~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------------VDNKGAKAEDVALNE  218 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--------------BCTTSCBGGGGCSST
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc--------------cCCCCCcHHHHHHHH
Confidence            99 999999999999999999999999999999 88986433              334456888887543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.5e-37  Score=295.91  Aligned_cols=197  Identities=21%  Similarity=0.146  Sum_probs=184.1

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                      .+..+..|.||||+|+..|+.+++++|++.|++++..  +|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            3566778999999999999999999999999999987  49999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcCC--c-chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVDD--A-GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~~--~-~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      |+..|+.+++++|+++|++++..+  + .||||+|+..|+.+++++|+++|++.... ..|+||||+|+..|+.+++++|
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence            999999999999999999998765  4 69999999999999999999999877333 2899999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          385 LEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       385 l~~g~~~~~~~~~g~tp-l~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                      +++|++++.+|..|+|| ||+|+..|+.+++++|+++|++....
T Consensus       181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred             HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            99999999999999998 99999999999999999999976544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.2e-36  Score=273.72  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=178.8

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      .+.||||.|+..|+.+.++.|++.+. +++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            46789999999999999999999876 99999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHH-HcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhCh-----HHHHHH
Q 010168          313 HDGVTSLLV-KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGL-----YLMAKL  383 (516)
Q Consensus       313 ~~~~v~~Ll-~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~  383 (516)
                      +.+++++|+ ..+++++..+  +.||||+|+..|+.+++++|+++| ++++.++..|+||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 5666777654  679999999999999999999999 9999999999999999999987     999999


Q ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010168          384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  421 (516)
Q Consensus       384 Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~  421 (516)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-37  Score=291.04  Aligned_cols=196  Identities=22%  Similarity=0.208  Sum_probs=180.4

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      ..+..|.||||+|+..|+.++++.|++.+.    +++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            345678999999999999999999987754    7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCC------c--CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhC
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLN------V--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEG  376 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~------~--~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g  376 (516)
                      |+|+..|+.+++++|+++|++++      .  ..+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999997632      2  3478999999999999999999999999999997 9999999999999


Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          377 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       377 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999999999999999999999999999999999765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3e-37  Score=291.83  Aligned_cols=192  Identities=21%  Similarity=0.135  Sum_probs=179.3

Q ss_pred             hHHHHHHHHhcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcCC------
Q 010168          235 LALRVNSAAYHGDLY----QLKGLIRAGADPNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------  297 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~------  297 (516)
                      |.||||.||..|+.+    ++++|++.|++++.    .|..|+||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            689999999999997    66777789999998    899999999999999   9999999999999887643      


Q ss_pred             -----CCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC---------------cchHHHHHHHcCCHHHHHHHHH---C
Q 010168          298 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCTAVARGDSDFLKRVLS---N  354 (516)
Q Consensus       298 -----d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------~~~~l~~A~~~~~~~~v~~Ll~---~  354 (516)
                           |..|.||||+|+..|+.+++++|+++|++++..+               +.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 4789999999999999999999999999998865               7799999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHH--hChHH-------HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 010168          355 GVDPSSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  418 (516)
Q Consensus       355 g~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~Ll~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~v~~L~  418 (516)
                      |++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999  78888       999999999999       899999999999999999999999999


Q ss_pred             HcccCccc
Q 010168          419 DAECTQLS  426 (516)
Q Consensus       419 ~~~~~~~~  426 (516)
                      ++|++...
T Consensus       242 ~~g~~~~~  249 (256)
T 2etb_A          242 QREFSGAA  249 (256)
T ss_dssp             HHHHHHHH
T ss_pred             hCCCCCCC
Confidence            99986543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-35  Score=283.34  Aligned_cols=225  Identities=25%  Similarity=0.279  Sum_probs=202.8

Q ss_pred             chhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 010168          200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG  279 (516)
Q Consensus       200 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g  279 (516)
                      +...+..+...+.......++.....  ....+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  116 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence            44566666666655555555544333  3445667899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcCC----------CCCCChHHHHHHHcCChHHHHHHHHc-CCCCCcCC--cchHHHHHHHcCC--
Q 010168          280 YEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCTAVARGD--  344 (516)
Q Consensus       280 ~~~~v~~Ll~~g~~~~~~----------d~~g~tpL~~A~~~~~~~~v~~Ll~~-g~~~~~~~--~~~~l~~A~~~~~--  344 (516)
                      +.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++..+  +.||||+|+..++  
T Consensus       117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  196 (285)
T 1wdy_A          117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccc
Confidence            999999999999999987          78899999999999999999999997 99988754  6799999999999  


Q ss_pred             --HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010168          345 --SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  421 (516)
Q Consensus       345 --~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~  421 (516)
                        .+++++|+++|++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       197 ~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence              999999999999999999999999999999999999999999 89999999999999999999999999999999999


Q ss_pred             cCccc
Q 010168          422 CTQLS  426 (516)
Q Consensus       422 ~~~~~  426 (516)
                      ++...
T Consensus       277 a~~~~  281 (285)
T 1wdy_A          277 ASTDC  281 (285)
T ss_dssp             SCSCC
T ss_pred             CCCCc
Confidence            97654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-36  Score=301.61  Aligned_cols=226  Identities=20%  Similarity=0.241  Sum_probs=198.3

Q ss_pred             ccchhhhhhhhhccchhhhhhhhc------cccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLK------SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP  271 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~------~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  271 (516)
                      ..+.+.++.+...+.......++.      .+.....+..+..|.||||+|+..|+.+++++|++.|++++..|..|+||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            345666666665544433222221      02233445667789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC---CCCcCCCCCCChHHHHHHHcC---ChHHHHHHHHcCCCCCc----------CCcchH
Q 010168          272 LHLATSRGYEDITLFLIQKG---VDINIKDKFGNTPLLEAIKCG---HDGVTSLLVKEGASLNV----------DDAGSF  335 (516)
Q Consensus       272 Lh~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~g~~~~~----------~~~~~~  335 (516)
                      ||+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|+++|++++.          ..+.||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            99999999999999999998   899999999999999999998   89999999999999885          257799


Q ss_pred             HHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 010168          336 LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  414 (516)
Q Consensus       336 l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v  414 (516)
                      ||+|+..|+.+++++|++++ ++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999875 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccC
Q 010168          415 KLLEDAECT  423 (516)
Q Consensus       415 ~~L~~~~~~  423 (516)
                      ++|++++++
T Consensus       363 ~~Ll~~~a~  371 (373)
T 2fo1_E          363 DIFDRCRPE  371 (373)
T ss_dssp             HHHHTTC--
T ss_pred             HHHHhcCcc
Confidence            999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-36  Score=308.32  Aligned_cols=244  Identities=22%  Similarity=0.208  Sum_probs=173.1

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS  277 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  277 (516)
                      ..+.+.+..+...+.......++......  +..+..+.||||.||..|+.+++++|++.|++++.++..|+||||+|+.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            34556666666666655555555443322  3344556777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC--CcchHHHHHHHcCCHHHHHHHHHCC
Q 010168          278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSNG  355 (516)
Q Consensus       278 ~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g  355 (516)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+..  .+.||||+|+..|+.+++++|+++|
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  169 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  169 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            77777777777777777777777777777777777777777777777766543  3557777777777777777777777


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccc
Q 010168          356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGM  435 (516)
Q Consensus       356 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~  435 (516)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++.           
T Consensus       170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------  238 (437)
T 1n11_A          170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-----------  238 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence            777777777777777777777777777777777777777777777777777777777777777777642           


Q ss_pred             cccCCCcceeecCCCCCCcccc
Q 010168          436 IDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                         ......+.+|+|.+...++
T Consensus       239 ---~~~~~~g~t~L~~A~~~g~  257 (437)
T 1n11_A          239 ---NAESVQGVTPLHLAAQEGH  257 (437)
T ss_dssp             ---TCCCTTCCCHHHHHHHTTC
T ss_pred             ---CCCCCCCCCHHHHHHHCCC
Confidence               2234456678888877777

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-36  Score=288.01  Aligned_cols=211  Identities=28%  Similarity=0.360  Sum_probs=190.3

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+..+.||||.||..|+.+++++|++.|+++|..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHH-CCCC--------------------------CCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS-NGVD--------------------------PSSR  361 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~-~g~~--------------------------~~~~  361 (516)
                      .|+.+++++|+++|++++..+  +.||||+|+..++.++++.++. .+.+                          ....
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            999999999999999998755  6799999999999999887764 2333                          2345


Q ss_pred             CCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCC
Q 010168          362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHP  441 (516)
Q Consensus       362 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~  441 (516)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..              ..
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--------------~~  261 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------------AV  261 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CC
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--------------Cc
Confidence            6789999999999999999999999999999999999999999999999999999999998543              33


Q ss_pred             cceeecCCCCCCcc
Q 010168          442 RKCTVFPFHPWDEK  455 (516)
Q Consensus       442 ~~~~~~~~~~~~~~  455 (516)
                      +..+.+|+|.+...
T Consensus       262 d~~g~t~l~~A~~~  275 (299)
T 1s70_B          262 NKVGQTAFDVADED  275 (299)
T ss_dssp             CTTSCCTTTSCCSG
T ss_pred             CCCCCCHHHHHHHH
Confidence            44566899998543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.7e-36  Score=294.42  Aligned_cols=250  Identities=22%  Similarity=0.250  Sum_probs=198.7

Q ss_pred             hhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCC------------------
Q 010168          201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPN------------------  262 (516)
Q Consensus       201 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------  262 (516)
                      .+.+..++..++..+...++.....++. ..+..|.||||+||..|+.++|++|+++|++++                  
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~-~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            3445555555555555555554443332 123347899999999999999999999887654                  


Q ss_pred             ---------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC----------CCCCChHHHHHHHcCChHHH
Q 010168          263 ---------------KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVT  317 (516)
Q Consensus       263 ---------------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~tpL~~A~~~~~~~~v  317 (516)
                                     ..|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                           45667889999999999999999999999887753          45688999999999999999


Q ss_pred             HHHHH-cCCCCCcCC--cchHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc-CC
Q 010168          318 SLLVK-EGASLNVDD--AGSFLCTAVARGD----SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GA  389 (516)
Q Consensus       318 ~~Ll~-~g~~~~~~~--~~~~l~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~  389 (516)
                      ++|++ .|++++..+  +.++++.++..++    ..++++|+++|++++.+|..|+||||+|+..|+.+++++|++. |+
T Consensus       185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  264 (337)
T 4g8k_A          185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  264 (337)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC
T ss_pred             HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC
Confidence            99996 588888765  5688887776543    3578899999999999999999999999999999999999985 89


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCc
Q 010168          390 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN  469 (516)
Q Consensus       390 ~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  469 (516)
                      +++.+|..|+||||+|+..|+.++|++|+++|++....                   .|+|.|...++         .+.
T Consensus       265 ~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-------------------~~L~~A~~~~~---------~~i  316 (337)
T 4g8k_A          265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-------------------DLVMTARRNYD---------HSL  316 (337)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-------------------CHHHHHHHTTC---------HHH
T ss_pred             cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-------------------CHHHHHHHcCC---------HHH
Confidence            99999999999999999999999999999999975321                   36777777776         456


Q ss_pred             HHHHHHHHhh
Q 010168          470 IEELIKLAVD  479 (516)
Q Consensus       470 ~~~l~~~~~~  479 (516)
                      ++-|++.|++
T Consensus       317 v~~Ll~~GA~  326 (337)
T 4g8k_A          317 VKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHCcCC
Confidence            6777776654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-35  Score=260.72  Aligned_cols=159  Identities=44%  Similarity=0.616  Sum_probs=132.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChH
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  315 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~  315 (516)
                      .++|+.||..|+.++|+.|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCC
Q 010168          316 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  395 (516)
Q Consensus       316 ~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  395 (516)
                      ++++|+++|++                               ++.+|.+|+||||+|+..|+.++|++|+++|++++.+|
T Consensus        85 ~v~~Ll~~gad-------------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  133 (169)
T 4gpm_A           85 VVKLLISKGAD-------------------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD  133 (169)
T ss_dssp             HHHHHHHTTCC-------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHCcCC-------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            77777776655                               45566677777777777777777777777777777777


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          396 RWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       396 ~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      ..|+||||+|+..|+.+++++|+++||+..
T Consensus       134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          134 SDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            777788888777777777887777777643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=285.70  Aligned_cols=220  Identities=20%  Similarity=0.244  Sum_probs=192.9

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS  277 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  277 (516)
                      ..+.+.+..++..+.......++....  ..+..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTC--CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            345555666665555555544444333  345566779999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCC
Q 010168          278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG  355 (516)
Q Consensus       278 ~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g  355 (516)
                      .|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  213 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG  213 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence            999999999999999998655 49999999999999999999999999998754  679999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-ccC
Q 010168          356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-ECT  423 (516)
Q Consensus       356 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~-~~~  423 (516)
                      ++++. +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+  ++.+++++|+++ |++
T Consensus       214 a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          214 ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS  279 (285)
T ss_dssp             CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred             CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence            99995 889999999999999999999999999999999999999999999  567999999998 554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.2e-36  Score=286.63  Aligned_cols=212  Identities=24%  Similarity=0.230  Sum_probs=174.9

Q ss_pred             cchhhhhhhhhccchhhhhhhhcccccc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITF-HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS  277 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  277 (516)
                      .+.+.++.++..+.......++...... ..+..+..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            4555666666655555554444433221 145567789999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCC-----------------------------------------------CcCCCCCCChHHHHHHH
Q 010168          278 RGYEDITLFLIQKGVD-----------------------------------------------INIKDKFGNTPLLEAIK  310 (516)
Q Consensus       278 ~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~g~tpL~~A~~  310 (516)
                      .|+.+++++|+++|++                                               ++.+|..|.||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  167 (282)
T 1oy3_D           88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (282)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHH
Confidence            9999999999998765                                               67788999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCC---cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          311 CGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      .|+.+++++|+++|++++..+   +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       168 ~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  247 (282)
T 1oy3_D          168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH  247 (282)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc
Confidence            999999999999999999865   78999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCC
Q 010168          388 GASVFTKDRWGNTPLDEGRMCGN  410 (516)
Q Consensus       388 g~~~~~~~~~g~tpl~~A~~~~~  410 (516)
                      |++++.+|..|.|||++|.....
T Consensus       248 ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          248 GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TCCCCCCC---------------
T ss_pred             CCCcCcCCCcccccccccCCccc
Confidence            99999999999999999987653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.6e-36  Score=304.05  Aligned_cols=240  Identities=23%  Similarity=0.261  Sum_probs=171.7

Q ss_pred             hhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 010168          202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE  281 (516)
Q Consensus       202 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~  281 (516)
                      ..+..+...........++.....  .+..+..+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  225 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV  225 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC--TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            344444444444444444433322  233445567777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 010168          282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS  359 (516)
Q Consensus       282 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~  359 (516)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++
T Consensus       226 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  305 (437)
T 1n11_A          226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD  305 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence            77777777777777777777777777777777777777777777766543  5677888888888888888888888888


Q ss_pred             CCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccC
Q 010168          360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKM  439 (516)
Q Consensus       360 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~  439 (516)
                      .++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++.              
T Consensus       306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~--------------  371 (437)
T 1n11_A          306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--------------  371 (437)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC--------------
Confidence            777788888888888888888888888888888888888888888888888888888888777432              


Q ss_pred             CCcceeecCCCCCCcccc
Q 010168          440 HPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~  457 (516)
                      .....+.+|++.+...++
T Consensus       372 ~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          372 EVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CCCSSSCCHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHcCc
Confidence            234455677777766665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-35  Score=275.38  Aligned_cols=219  Identities=26%  Similarity=0.346  Sum_probs=195.7

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR  278 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~  278 (516)
                      .+...+..++..+.......++.....  .+..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            445566666655555555444444333  345566789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcC-CCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCC
Q 010168          279 GYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG  355 (516)
Q Consensus       279 g~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g  355 (516)
                      |+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  167 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK  167 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999998 8999999999999999999999999999999999998754  679999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       356 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+.+..|++
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876666654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-37  Score=305.90  Aligned_cols=211  Identities=19%  Similarity=0.190  Sum_probs=193.4

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChH
Q 010168          233 AELALRVNSAAYHGDLYQLKGLI--------RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  304 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tp  304 (516)
                      ..|.||||+||..|+.+++++|+        +.|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            57899999999999998888776        7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHcC---CCCCcC--CcchHHHHHHHcC---CHHHHHHHHHCCCCCCC--------CCCCCCcH
Q 010168          305 LLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCTAVARG---DSDFLKRVLSNGVDPSS--------RDYDHRTP  368 (516)
Q Consensus       305 L~~A~~~~~~~~v~~Ll~~g---~~~~~~--~~~~~l~~A~~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~  368 (516)
                      ||+|+..|+.+++++|++++   ++++..  .+.||||+|+..+   +.+++++|+++|++++.        .+..|+||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            99999999999999999987   677664  4779999999998   89999999999999886        67789999


Q ss_pred             HHHHHHhChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeec
Q 010168          369 LHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVF  447 (516)
Q Consensus       369 L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (516)
                      ||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++...              ....+.+
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~--------------~d~~g~t  348 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--------------VDATDHT  348 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------------CCSSSCC
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC--------------CCCCCCC
Confidence            99999999999999999876 99999999999999999999999999999999986433              3344568


Q ss_pred             CCCCCCcccc
Q 010168          448 PFHPWDEKVH  457 (516)
Q Consensus       448 ~~~~~~~~~~  457 (516)
                      |+|.|...++
T Consensus       349 ~l~~A~~~g~  358 (373)
T 2fo1_E          349 ARQLAQANNH  358 (373)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            8898888887

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.2e-35  Score=290.68  Aligned_cols=226  Identities=25%  Similarity=0.242  Sum_probs=195.2

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCc--------------
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDIN--------------  295 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~--------------  295 (516)
                      ....+.|+||.|+..|++++|++||++|+++|.++. .|+||||+||..|+.++|++|+++|++++              
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            445689999999999999999999999999999876 49999999999999999999999988654              


Q ss_pred             -------------------CCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC------------CcchHHHHHHHcCC
Q 010168          296 -------------------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGD  344 (516)
Q Consensus       296 -------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~l~~A~~~~~  344 (516)
                                         ..|..|.||||+|+..|+.+++++|+++|++++..            .|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                               45678999999999999999999999999988753            35689999999999


Q ss_pred             HHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhCh----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          345 SDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       345 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      .+++++|++ .|++++.++..|.||+|.++..+.    ..++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            999999995 699999999999999999887653    468999999999999999999999999999999999999998


Q ss_pred             c-ccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhh
Q 010168          420 A-ECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  479 (516)
Q Consensus       420 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  479 (516)
                      . |++..              .+...+.+|+|.|+..++         .+.++.|++.|++
T Consensus       261 ~~~~~vn--------------~~d~~G~TpL~~A~~~g~---------~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          261 QEHIEIN--------------DTDSDGKTALLLAVELKL---------KKIAELLCKRGAS  298 (337)
T ss_dssp             STTCCTT--------------CBCTTSCBHHHHHHHTTC---------HHHHHHHHTTSCS
T ss_pred             hcCCccc--------------CcCCCCCCHHHHHHHcCC---------HHHHHHHHHCCCC
Confidence            5 45332              233456689999988887         4556666665543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=275.65  Aligned_cols=218  Identities=23%  Similarity=0.238  Sum_probs=118.4

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYE  281 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~  281 (516)
                      .+..++..+.......++.....  ....+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus        12 ~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           12 DIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             CHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             HHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            34444444444443333333222  23333445555555555555555555555555554333 2355555555555555


Q ss_pred             HHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCC-HHHHHHHHHCCCCC
Q 010168          282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD-SDFLKRVLSNGVDP  358 (516)
Q Consensus       282 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~-~~~v~~Ll~~g~~~  358 (516)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..++ .+++++|++.|+++
T Consensus        90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence            55555555555555555555555555555555555555555555555432  3455555554443 45555555555555


Q ss_pred             CCCCC-CCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          359 SSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       359 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      +..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++++
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            55554 55555555555555555555555555555555555555555555555555555555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.3e-36  Score=287.45  Aligned_cols=195  Identities=22%  Similarity=0.195  Sum_probs=175.8

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC---
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI---  294 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~---  294 (516)
                      ...+..+.||||.||..|+.++|+.|++    .+++++    ..|..|+||||+|+..   |+.+++++|+++|+++   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3456678999999999999999998886    566665    4578999999999987   9999999999998753   


Q ss_pred             ----cC----CCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC----------------cchHHHHHHHcCCHHHHHH
Q 010168          295 ----NI----KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKR  350 (516)
Q Consensus       295 ----~~----~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~~  350 (516)
                          +.    .|..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                22    56799999999999999999999999999998764                7799999999999999999


Q ss_pred             HHH---CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHcCCH
Q 010168          351 VLS---NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNK  411 (516)
Q Consensus       351 Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~-------~~~~~g~tpl~~A~~~~~~  411 (516)
                      |++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            999   999999999999999999999998         899999999999987       4899999999999999999


Q ss_pred             HHHHHHHHcccC
Q 010168          412 NLIKLLEDAECT  423 (516)
Q Consensus       412 ~~v~~L~~~~~~  423 (516)
                      +++++|+++|+.
T Consensus       247 ~iv~~Ll~~ga~  258 (273)
T 2pnn_A          247 GVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCC
Confidence            999999999993

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.7e-35  Score=291.20  Aligned_cols=227  Identities=27%  Similarity=0.309  Sum_probs=203.7

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      ..+..+.++||.||..|+.+.++.|+.. +.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            3456788999999999999999998876 899999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCC------------------------
Q 010168          309 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD------------------------  362 (516)
Q Consensus       309 ~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~------------------------  362 (516)
                      +..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+                        
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            99999999999999999998765  6799999999999999999999999987654                        


Q ss_pred             ------------------------------CCCCcHHHHHHHh---ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 010168          363 ------------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  409 (516)
Q Consensus       363 ------------------------------~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  409 (516)
                                                    ..|.||||+|+..   +..+++++|+++|++++.+|..|+||||+|+..|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  258 (351)
T 3utm_A          179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA  258 (351)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC
Confidence                                          4567999999998   6689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhh
Q 010168          410 NKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD  479 (516)
Q Consensus       410 ~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  479 (516)
                      +.+++++|+++|++...              ....+.+|+|.+...++         .+.++.|++.+++
T Consensus       259 ~~~~v~~Ll~~ga~~n~--------------~d~~g~t~L~~A~~~~~---------~~~v~~Ll~~gad  305 (351)
T 3utm_A          259 HNDVMEVLHKHGAKMNA--------------LDSLGQTALHRAALAGH---------LQTCRLLLSYGSD  305 (351)
T ss_dssp             CHHHHHHHHHTTCCTTC--------------CCTTSCCHHHHHHHHTC---------HHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHHcCc---------HHHHHHHHHcCCC
Confidence            99999999999986533              33445689999888887         5667777766554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.2e-35  Score=257.11  Aligned_cols=130  Identities=38%  Similarity=0.496  Sum_probs=116.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHH
Q 010168          270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  349 (516)
Q Consensus       270 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~  349 (516)
                      ++|+.||..|+.++|++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|+                        
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga------------------------   61 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------------------------   61 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc------------------------
Confidence            57899999999999999999999999999999999999888888777777666554                        


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccccc
Q 010168          350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH  429 (516)
Q Consensus       350 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~  429 (516)
                             +++.+|..|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++...+..
T Consensus        62 -------d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           62 -------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -------chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence                   5567788899999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             c
Q 010168          430 Y  430 (516)
Q Consensus       430 ~  430 (516)
                      .
T Consensus       135 ~  135 (169)
T 4gpm_A          135 D  135 (169)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.3e-35  Score=271.75  Aligned_cols=214  Identities=21%  Similarity=0.165  Sum_probs=185.1

Q ss_pred             hhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHHc
Q 010168          202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG--ADPNK-TDYDGRSPLHLATSR  278 (516)
Q Consensus       202 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~Lh~A~~~  278 (516)
                      ..+..+...+.......++...... ....+..|.||||+|+..|+.+++++|++.|  ++++. .+..|+||||+|+..
T Consensus         4 t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            4 YPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            3444444444444443333333222 2345677899999999999999999999999  55555 788999999999999


Q ss_pred             CCHHHHHHHHHcC--CCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHC
Q 010168          279 GYEDITLFLIQKG--VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN  354 (516)
Q Consensus       279 g~~~~v~~Ll~~g--~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~  354 (516)
                      |+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  162 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  162 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999998  8999999999999999999999999999999999998765  67999999999999999999999


Q ss_pred             C-CCCCCCCCCCCcHHHHHHHhChHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          355 G-VDPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       355 g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      | ++++.+|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|+..   +++++|++
T Consensus       163 g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            9 999999999999999999999999999999 89999999999999999999754   56777765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=269.75  Aligned_cols=201  Identities=25%  Similarity=0.265  Sum_probs=187.2

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCChHHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLE  307 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~  307 (516)
                      ...+..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            3446678899999999999999999999999999999999999999999999999999999999988655 559999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh-HHHHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLMAKLL  384 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~L  384 (516)
                      |+..|+.+++++|+++|++++..+  +.+|||.|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999998754  6699999999999999999999999999999999999999997776 8999999


Q ss_pred             HHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcccCcccccc
Q 010168          385 LEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH  429 (516)
Q Consensus       385 l~~g~~~~~~~~-~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~  429 (516)
                      ++.|++++..+. .|.||||+|+..|+.+++++|+++|++......
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI  208 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999997 899999999999999999999999998865544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=9.4e-36  Score=282.17  Aligned_cols=193  Identities=20%  Similarity=0.152  Sum_probs=175.4

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHH----HcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 010168          234 ELALRVNSAAYHGDLYQLKGLI----RAGADPNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD---------  293 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~----~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~---------  293 (516)
                      .+.++||.||..|+.+.++.|+    +.|++++..+    ..|+||||+|+   ..|+.+++++|+++|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            4689999999999999655555    5899998665    77999999999   67999999999998754         


Q ss_pred             --CcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC----------------cchHHHHHHHcCCHHHHHHHHH--
Q 010168          294 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKRVLS--  353 (516)
Q Consensus       294 --~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~~Ll~--  353 (516)
                        ++..|..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              44556699999999999999999999999999999875                7899999999999999999999  


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHH
Q 010168          354 -NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL  416 (516)
Q Consensus       354 -~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~v~~  416 (516)
                       +|++++.+|..|+||||+|+..|+         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999999887         79999999999998       6799999999999999999999999


Q ss_pred             HHHcccCccc
Q 010168          417 LEDAECTQLS  426 (516)
Q Consensus       417 L~~~~~~~~~  426 (516)
                      |+++|++...
T Consensus       244 Ll~~g~~~~~  253 (260)
T 3jxi_A          244 IIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHhCCCccc
Confidence            9999986544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-35  Score=273.55  Aligned_cols=210  Identities=24%  Similarity=0.283  Sum_probs=186.6

Q ss_pred             CCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcC
Q 010168          246 GDLYQLKGLIRAGADPNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG  324 (516)
Q Consensus       246 g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  324 (516)
                      |+.+++++|+++|++++.. |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6788899999999999765 789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCcC--CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCH
Q 010168          325 A-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP  401 (516)
Q Consensus       325 ~-~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tp  401 (516)
                      + +++..  .+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            7 66654  47799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHh
Q 010168          402 LDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAV  478 (516)
Q Consensus       402 l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  478 (516)
                      ||+|+..|+.+++++|+++|++...              ....+.+|+|.+...++         .+.++-|++.++
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~--------------~~~~g~t~l~~A~~~~~---------~~i~~~L~~~g~  215 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDI--------------TDHMDRLPRDIAQERMH---------HDIVRLLDEYNL  215 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC--------------CCTTCCCHHHHHHHTTC---------HHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcc--------------ccccCCCHHHHHHHhcc---------hHHHHHHHHcCC
Confidence            9999999999999999999986432              23345688888877777         455555655443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3e-35  Score=282.48  Aligned_cols=219  Identities=16%  Similarity=0.165  Sum_probs=196.4

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS  277 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~  277 (516)
                      ..+.+.+..++..+.......++......+..    .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence            34566777777766666666666554444333    37999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCC-ChHHHHHHHcCChHHHHHHHHcCCCCCcC-CcchHHHHHHHcCCHHHHHHHHHCC
Q 010168          278 RGYEDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNG  355 (516)
Q Consensus       278 ~g~~~~v~~Ll~~g~~~~~~d~~g-~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g  355 (516)
                      .|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++.... .+.||||+|+..|+.+++++|+++|
T Consensus       105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  184 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM  184 (285)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence            999999999999999999999999 79999999999999999999999988665 7889999999999999999999999


Q ss_pred             CCCCCCCCCCCcH-HHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          356 VDPSSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       356 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                      ++++.++..|+|| ||+|+..|+.+++++|+++|++++.+|       +.|+..|+.+++++|+++|++....
T Consensus       185 ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999998 999999999999999999999999988       3567799999999999999876543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-34  Score=276.78  Aligned_cols=214  Identities=26%  Similarity=0.347  Sum_probs=182.1

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED  282 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  282 (516)
                      .+..+...+.......++.....  .+..+..|.||||+||..|+.+++++|++.|++++..|..|+||||+|+..|+.+
T Consensus        43 ~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~  120 (299)
T 1s70_B           43 VFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            34444444444444444433322  3455677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHH-cCCCCCc----------------------------CCcc
Q 010168          283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNV----------------------------DDAG  333 (516)
Q Consensus       283 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~----------------------------~~~~  333 (516)
                      ++++|+++|++++..|..|.||||+|+..++.++++.|+. .+.+++.                            ..+.
T Consensus       121 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~  200 (299)
T 1s70_B          121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (299)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             HHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCC
Confidence            9999999999999999999999999999999999988775 3444332                            3578


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 010168          334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  413 (516)
Q Consensus       334 ~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  413 (516)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.... +.
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~-~~  279 (299)
T 1s70_B          201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL-GY  279 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG-HH
T ss_pred             CHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999976544 44


Q ss_pred             HHHHHH
Q 010168          414 IKLLED  419 (516)
Q Consensus       414 v~~L~~  419 (516)
                      ++.+++
T Consensus       280 l~~l~~  285 (299)
T 1s70_B          280 LEELQK  285 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=270.21  Aligned_cols=189  Identities=21%  Similarity=0.251  Sum_probs=178.3

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCCCCCCChHHHHHH-
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI-  309 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpL~~A~-  309 (516)
                      ...+++|.|+..|+.+.++.+++.+.+  +|..|..|+||||+|+..|+.+++++|+++|+ +++..|..|.||||+|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            345678999999999999999988766  89999999999999999999999999999998 99999999999999999 


Q ss_pred             ----HcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 010168          310 ----KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       310 ----~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  383 (516)
                          ..++.+++++|++.|.+++..+  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence                6688999999999998887654  7899999999999999999999999999999999999999999999999999


Q ss_pred             HHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          384 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       384 Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      |++ .|++++.+|..|+||||+|+..|+.+++++|++++.
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999 899999999999999999999999999999998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.5e-32  Score=246.21  Aligned_cols=161  Identities=29%  Similarity=0.370  Sum_probs=121.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHH
Q 010168          262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTA  339 (516)
Q Consensus       262 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A  339 (516)
                      |.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666666666666555443  44666666


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       340 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            66666666777777777788888999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 010168          420 AEC  422 (516)
Q Consensus       420 ~~~  422 (516)
                      ++.
T Consensus       189 ~~~  191 (192)
T 2rfm_A          189 VRR  191 (192)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.1e-31  Score=236.85  Aligned_cols=160  Identities=36%  Similarity=0.528  Sum_probs=136.8

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      ....+.++|+.||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      .|+.+++++|+++|+                               +++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        90 ~~~~~~~~~Ll~~g~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGA-------------------------------DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             TTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCC-------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            887777777766655                               4556677888999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010168          391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE  421 (516)
Q Consensus       391 ~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~  421 (516)
                      ++.+|..|.||||+|+..|+.+++++|++.|
T Consensus       139 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9888888999999999999999999988765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.2e-33  Score=277.46  Aligned_cols=223  Identities=19%  Similarity=0.203  Sum_probs=193.1

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHc----CCCCCC-----------
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRA----GADPNK-----------  263 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~-----------  263 (516)
                      .+.+.+..+...+.......++.....    .....|.||||+|+..|+.+++++|++.    |++++.           
T Consensus        52 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  127 (364)
T 3ljn_A           52 FGCTALHLACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN  127 (364)
T ss_dssp             TCCCHHHHHHHHCCHHHHHHHHHHCCC----CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEE
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhh
Confidence            345566666666666555555554432    2224689999999999999999999998    888776           


Q ss_pred             ------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCC-----CCcC
Q 010168          264 ------TDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-----LNVD  330 (516)
Q Consensus       264 ------~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~-----~~~~  330 (516)
                            .+..|.||||+|+..|  +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++     ++..
T Consensus       128 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  207 (364)
T 3ljn_A          128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA  207 (364)
T ss_dssp             EETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred             hhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Confidence                  8889999999999999  99999999999999999999999999999999999999999999988     7765


Q ss_pred             C--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCC------------CCC
Q 010168          331 D--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT------------KDR  396 (516)
Q Consensus       331 ~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~  396 (516)
                      +  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.            .+.
T Consensus       208 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  287 (364)
T 3ljn_A          208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR  287 (364)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGG
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccc
Confidence            4  77999999999999999999999999999999999999999999999999999999876533            456


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          397 WGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       397 ~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      .|+||++.|+..|+.+.+..|+..+.+..
T Consensus       288 ~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          288 VVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             CCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            78999999999999888888887776543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5.3e-32  Score=236.90  Aligned_cols=158  Identities=27%  Similarity=0.396  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  313 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~  313 (516)
                      ...||||.|+..|+.+++++|++.|++++..+..|+||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35688888888888888888888888888888888888888888 88888888888888888888888888888888777


Q ss_pred             hHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC-CC
Q 010168          314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VF  392 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~  392 (516)
                      .+++++|+++|+                               +++.+|..|+||||+|+..|+.+++++|+++|++ ++
T Consensus        83 ~~~v~~Ll~~g~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  131 (162)
T 1ihb_A           83 LDTLQTLLEFQA-------------------------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  131 (162)
T ss_dssp             HHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHHHcCC-------------------------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence            777776666554                               5556777888999999999999999999998887 58


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          393 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       393 ~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                      .+|..|+||||+|+..|+.+++++|+++|++
T Consensus       132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          132 HRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8888899999999999999999999998874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=4.6e-33  Score=259.65  Aligned_cols=210  Identities=21%  Similarity=0.241  Sum_probs=180.2

Q ss_pred             cchhhhhhhhhccchhhhhhhhccccc--cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 010168          199 DGRKVLTNLLEGKESNLRLKQLKSDIT--FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT  276 (516)
Q Consensus       199 ~~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~  276 (516)
                      .+...++.++..+.......++.....  ..++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            455666666655554444333332221  245666778999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCC------CcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC---CcchHHHHHHHcCCHHH
Q 010168          277 SRGYEDITLFLIQKGVD------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDF  347 (516)
Q Consensus       277 ~~g~~~~v~~Ll~~g~~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~~  347 (516)
                      ..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++..   .+.||||+|+..|+.++
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~  166 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  166 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999976      4678899999999999999999999999999999876   46799999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHc
Q 010168          348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF--TKDRWGNTPLDEGRMC  408 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~tpl~~A~~~  408 (516)
                      +++|+++|++++.++..|+||||+|+..|+.+++++|+++|++..  .++..|.||.+.+...
T Consensus       167 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999999999999999999999999999876  7888999998766543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=3e-32  Score=241.08  Aligned_cols=167  Identities=26%  Similarity=0.344  Sum_probs=107.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  313 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~  313 (516)
                      +.||||.||..|+.++++.|++.|.+ ++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            35678888888888888888888776 67788888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          314 DGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      .+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            877777777766655432  334444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCCCCCCH
Q 010168          392 FTKDRWGNTP  401 (516)
Q Consensus       392 ~~~~~~g~tp  401 (516)
                      ..++..|.||
T Consensus       162 ~~~~~~~~~p  171 (172)
T 3v30_A          162 FQSNLVPADP  171 (172)
T ss_dssp             SCC-------
T ss_pred             hcccCCCCCC
Confidence            4444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.3e-31  Score=235.67  Aligned_cols=160  Identities=27%  Similarity=0.336  Sum_probs=122.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      +.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             HHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCC
Q 010168          315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  394 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  394 (516)
                      +++++|++                               +|++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        83 ~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  131 (167)
T 3v31_A           83 DIVKMLLD-------------------------------CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE  131 (167)
T ss_dssp             HHHHHHHH-------------------------------HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHH-------------------------------CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            55555555                               45566677888999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          395 DRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       395 ~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      |..|+||||+|+..|+.+++++|++++++..
T Consensus       132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          132 TDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-32  Score=267.30  Aligned_cols=197  Identities=18%  Similarity=0.174  Sum_probs=159.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC--
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--  313 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~--  313 (516)
                      +.+|.|+..+..++++.|++.|+++|. +|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            456888888889999999999999999 89999999999999999999999999999999999999999999999998  


Q ss_pred             -hHHHHHHHHcC-CCCCcC--CcchHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 010168          314 -DGVTSLLVKEG-ASLNVD--DAGSFLCTAVA----RGDSDFLKRVLSN--------------------GVDPSSRDYDH  365 (516)
Q Consensus       314 -~~~v~~Ll~~g-~~~~~~--~~~~~l~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~~~g  365 (516)
                       .++++.|++.+ ++++..  .|.||||+|+.    .|+.+++++|++.                    |++++.++..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             78888888876 556654  47799999999    8999999999976                    89999999999


Q ss_pred             CcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCccee
Q 010168          366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCT  445 (516)
Q Consensus       366 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (516)
                      +||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|+++|++..              .+...+
T Consensus       259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--------------~~d~~G  316 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--------------IANKSG  316 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--------------CCCTTS
T ss_pred             CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--------------ccCCCC
Confidence            999999986      8999998  588899999999999999999999999999999653              334456


Q ss_pred             ecCCCCCCcc
Q 010168          446 VFPFHPWDEK  455 (516)
Q Consensus       446 ~~~~~~~~~~  455 (516)
                      .+|+|.|+..
T Consensus       317 ~TpL~~A~~~  326 (327)
T 1sw6_A          317 LRPVDFGAGL  326 (327)
T ss_dssp             CCGGGGTCC-
T ss_pred             CCHHHHHHhc
Confidence            6888888654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=9.2e-31  Score=226.81  Aligned_cols=151  Identities=32%  Similarity=0.438  Sum_probs=132.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      ..++||.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            5688999999999999999999998876 578899999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCC
Q 010168          315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  394 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  394 (516)
                      +++++|+++|++                               ++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        81 ~~v~~Ll~~g~~-------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           81 NIVEVLLKHGAD-------------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHHTTTCC-------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHcCCC-------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            777777766554                               5567778889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHH
Q 010168          395 DRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       395 ~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      |..|+||||+|+..|+.+++++|
T Consensus       130 ~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999998887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.5e-31  Score=241.16  Aligned_cols=163  Identities=25%  Similarity=0.277  Sum_probs=155.5

Q ss_pred             cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      ...+..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            33456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  383 (516)
                      |+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999999999999998865  6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q 010168          384 LLEAG  388 (516)
Q Consensus       384 Ll~~g  388 (516)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99865

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.8e-31  Score=233.65  Aligned_cols=159  Identities=26%  Similarity=0.326  Sum_probs=134.1

Q ss_pred             chhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 010168          200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG  279 (516)
Q Consensus       200 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g  279 (516)
                      +...+..++..+.......++....  ..+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQEN--VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            4566777777777666666665443  35666778999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 010168          280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS  359 (516)
Q Consensus       280 ~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~  359 (516)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++                               ++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------~~  129 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-------------------------------PT  129 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------TT
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------CC
Confidence            99999999999999999999999999999998888877777766554                               45


Q ss_pred             CCCCCCCcHHHHHHHhChHHHHHHHHHcCCCC
Q 010168          360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  391 (516)
Q Consensus       360 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  391 (516)
                      .++..|.||||+|+..|+.+++++|++++++.
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            56677888888888888888888888876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.9e-32  Score=266.01  Aligned_cols=176  Identities=19%  Similarity=0.177  Sum_probs=153.9

Q ss_pred             ccccc-chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCcCCCCC
Q 010168          226 FHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIKDKF  300 (516)
Q Consensus       226 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~g-~~~~~~d~~  300 (516)
                      ..++. .+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|++++ ++++.+|..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            34445 67789999999999999999999999999999999999999999999998   78889999886 789999999


Q ss_pred             CChHHHHHHH----cCChHHHHHHHHc--------------------CCCCCcCC--cchHHHHHHHcCCHHHHHHHHHC
Q 010168          301 GNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCTAVARGDSDFLKRVLSN  354 (516)
Q Consensus       301 g~tpL~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~  354 (516)
                      |+||||+|+.    .|+.+++++|++.                    |++++..+  +.||||.|+.      +++|+++
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence            9999999999    8999999999987                    77777755  6699999985      8999988


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 010168          355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  409 (516)
Q Consensus       355 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  409 (516)
                        +++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus       275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence              68999999999999999999999999999999999999999999999998765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=7e-31  Score=230.59  Aligned_cols=159  Identities=36%  Similarity=0.476  Sum_probs=136.2

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      +..+.|+||.|+..|+.++++.|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            45688999999999999999999874 56778888889999999999999999999999999999999999999998888


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      .|+.+++++|+++|+                               +++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        85 ~~~~~~v~~Ll~~g~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           85 YGHYEVAELLVKHGA-------------------------------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             TTCHHHHHHHHHTTC-------------------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHHhCCC-------------------------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            887777777766554                               5566777899999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       391 ~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      ++.+|..|+||||+|+. |+.+++++|+++|+
T Consensus       134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999776 88999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1e-30  Score=231.16  Aligned_cols=159  Identities=25%  Similarity=0.290  Sum_probs=150.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCC
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD  344 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~  344 (516)
                      +.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            57899999999999999999999987 89999999999999999999999999999999998754  6799999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       345 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             cc
Q 010168          425 LS  426 (516)
Q Consensus       425 ~~  426 (516)
                      ..
T Consensus       162 ~~  163 (172)
T 3v30_A          162 FQ  163 (172)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=9.8e-32  Score=253.87  Aligned_cols=198  Identities=19%  Similarity=0.167  Sum_probs=173.4

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCCCcC----CCCCCChHHHHHHHc---CChHHHHHHHHcCCCCCc------
Q 010168          267 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------  329 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~----~d~~g~tpL~~A~~~---~~~~~v~~Ll~~g~~~~~------  329 (516)
                      .|+||||+||..|+.+    ++++|+++|++++.    .|..|.||||+|+..   |+.+++++|+++|++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3899999999999997    66777789999998    899999999999999   999999999999987763      


Q ss_pred             -------CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHhChHHHHHHHHH---
Q 010168          330 -------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-------------HRTPLHVAASEGLYLMAKLLLE---  386 (516)
Q Consensus       330 -------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~---  386 (516)
                             ..+.||||+|+..|+.+++++|+++|++++.++..             |+||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                   34789999999999999999999999999999886             9999999999999999999999   


Q ss_pred             cCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          387 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       387 ~g~~~~~~~~~g~tpl~~A~~--~~~~~-------~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|++......       ........+.+|+|.|...++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-------LEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC-------GGGCCCTTSCCHHHHHHHTTC
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc-------cccccCCCCCCHHHHHHHhCC
Confidence            999999999999999999999  88988       99999999997532110       013344556799999999888


Q ss_pred             cccceEEEcCCcHHHHHHHHhhh
Q 010168          458 RRHGIVLWVPHNIEELIKLAVDK  480 (516)
Q Consensus       458 ~~~~~~~~~p~~~~~l~~~~~~~  480 (516)
                               .+.++.|++.+...
T Consensus       234 ---------~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          234 ---------IEIFRHILQREFSG  247 (256)
T ss_dssp             ---------HHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhCCCCC
Confidence                     77778888877654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.5e-30  Score=233.71  Aligned_cols=186  Identities=24%  Similarity=0.378  Sum_probs=162.0

Q ss_pred             hhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 010168          202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE  281 (516)
Q Consensus       202 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~  281 (516)
                      ..+..++..+........+... ....+..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   85 (201)
T 3hra_A            7 GALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT   85 (201)
T ss_dssp             THHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3444444444443333333322 223455667789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcC-CCCCcCC--cchHHHHHHHcCC-----HHHHHHHH
Q 010168          282 DITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGD-----SDFLKRVL  352 (516)
Q Consensus       282 ~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-~~~~~~~--~~~~l~~A~~~~~-----~~~v~~Ll  352 (516)
                      +++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++..+  +.||||+|+..++     .+++++|+
T Consensus        86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll  165 (201)
T 3hra_A           86 EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM  165 (201)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence            9999999 567899999999999999999999999999999999 8887755  6799999999998     99999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       353 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      ++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       166 ~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999999999999999999886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.8e-34  Score=264.58  Aligned_cols=186  Identities=21%  Similarity=0.228  Sum_probs=171.9

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  308 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A  308 (516)
                      ...+..+.||||.||..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCCCcC---CcchHHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 010168          309 IKCGHDGVTSLLVKEGASLNVD---DAGSFLCTA--VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       309 ~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  383 (516)
                      +..|+.+++++|+++|++++..   .+.||||+|  +..|+.+++++|+++|++++..+..|.||++.++..+.   +++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~  171 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DEL  171 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBC
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---ccc
Confidence            9999999999999999999874   578999999  99999999999999999999999999999997665543   367


Q ss_pred             HHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          384 LLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       384 Ll~~g~~--~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      |++.|++  ++.+|..|+||||+|+..|+.++|+.+
T Consensus       172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             CccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            8889988  788999999999999999999888653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.2e-30  Score=232.49  Aligned_cols=162  Identities=25%  Similarity=0.311  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      .+.++||.||..|+.+++++|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            466788888888888888888887 5678888888888888888888888888888888888888888888888888887


Q ss_pred             ChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCC
Q 010168          313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  392 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  392 (516)
                      +.+++++|+++|+++                               +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        84 ~~~~v~~Ll~~g~~~-------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS  132 (179)
T ss_dssp             CHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred             CHHHHHHHHHcCCCC-------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            777777777666554                               4555566666666666666666666666666666


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          393 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       393 ~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      .+|..|.|||++|+..++.+++++|+++|++...
T Consensus       133 ~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             BCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            6666666666666666666666666666665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=6.8e-30  Score=222.00  Aligned_cols=153  Identities=25%  Similarity=0.425  Sum_probs=133.3

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCC
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  313 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~  313 (516)
                      +.||||.|+..|+.++++.|++. +.+++..+..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57899999999999999999988 45888999999999999 88999999999999999999999999999999888888


Q ss_pred             hHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCC
Q 010168          314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  393 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  393 (516)
                      .+++++|+++|++                               ++.+|..|+||||+|+..|+.+++++|+++ ++++.
T Consensus        81 ~~~v~~Ll~~g~~-------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           81 LDTLKVLVEHGAD-------------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHHHHHHTTCC-------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHHHHHHcCCC-------------------------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            7777777766554                               556677888999999999999999999988 88999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010168          394 KDRWGNTPLDEGRMCGNKNLIKLLEDA  420 (516)
Q Consensus       394 ~~~~g~tpl~~A~~~~~~~~v~~L~~~  420 (516)
                      +|..|+||||+|+..|+.+++++|+++
T Consensus       129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          129 RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999998864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.1e-31  Score=252.13  Aligned_cols=173  Identities=20%  Similarity=0.275  Sum_probs=147.0

Q ss_pred             chhhhHHHHHHHHhc---CCHHHHHHHHHcCCCC-------C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Q 010168          231 HEAELALRVNSAAYH---GDLYQLKGLIRAGADP-------N----KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI  296 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~-------~----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~  296 (516)
                      .+..|.||||+||..   |+.+++++|++.|+++       +    ..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            467899999999987   9999999999998653       2    2567899999999999999999999999999999


Q ss_pred             CCC--------------CCChHHHHHHHcCChHHHHHHHH---cCCCCCcCC--cchHHHHHHHcCC---------HHHH
Q 010168          297 KDK--------------FGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCTAVARGD---------SDFL  348 (516)
Q Consensus       297 ~d~--------------~g~tpL~~A~~~~~~~~v~~Ll~---~g~~~~~~~--~~~~l~~A~~~~~---------~~~v  348 (516)
                      ++.              .|.||||+|+..|+.+++++|++   +|++++..+  +.||||+|+..|+         .+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            987              79999999999999999999999   999998765  6799999999998         8999


Q ss_pred             HHHHHCCCCCC-------CCCCCCCcHHHHHHHhChHHHHHHHHHcCC-CCCCCCCCCCCHHH
Q 010168          349 KRVLSNGVDPS-------SRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKDRWGNTPLD  403 (516)
Q Consensus       349 ~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpl~  403 (516)
                      ++|+++|++++       .+|..|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus       210 ~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            99999999987       489999999999999999999999999999 88887777776643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=6.1e-30  Score=227.79  Aligned_cols=134  Identities=23%  Similarity=0.271  Sum_probs=113.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCC
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  344 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~  344 (516)
                      ..+.+|||.||..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|+                   
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------------   63 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-------------------   63 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-------------------
Confidence            4577889999999999999988887 66788888888888888888777777777666554                   


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       345 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                                  +++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus        64 ------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           64 ------------RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             ------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             ------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence                        55567788999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccccc
Q 010168          425 LSEFHY  430 (516)
Q Consensus       425 ~~~~~~  430 (516)
                      ......
T Consensus       132 ~~~~~~  137 (179)
T 3f6q_A          132 SICNKY  137 (179)
T ss_dssp             SBCCTT
T ss_pred             chhccC
Confidence            655443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=8.3e-31  Score=244.83  Aligned_cols=177  Identities=16%  Similarity=0.086  Sum_probs=121.4

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45889999999999999999999999999864 78899999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHhChHHHHHHHHHc
Q 010168          313 HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA  387 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~g~~~~v~~Ll~~  387 (516)
                      +.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            9999999999998887754  56888888888888888888888888888877766 888888  677888888888888


Q ss_pred             CCCCCCC---------CCCCCCHHHHHHHcCC
Q 010168          388 GASVFTK---------DRWGNTPLDEGRMCGN  410 (516)
Q Consensus       388 g~~~~~~---------~~~g~tpl~~A~~~~~  410 (516)
                      |++++..         +..+.+|+++|...|.
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            8777665         4557777777766664

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=9.4e-30  Score=240.80  Aligned_cols=162  Identities=20%  Similarity=0.252  Sum_probs=147.6

Q ss_pred             hhhhHHHHHHHH---hcCCHHHHHHHHHcCCC-----------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC
Q 010168          232 EAELALRVNSAA---YHGDLYQLKGLIRAGAD-----------PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK  297 (516)
Q Consensus       232 ~~~~~t~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~  297 (516)
                      +..|.||||+|+   ..|+.+++++|++.|++           .+..|..|+||||+||..|+.++|++|+++|++++..
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            366999999999   77999999999998754           3445568999999999999999999999999999999


Q ss_pred             C--------------CCCChHHHHHHHcCChHHHHHHHH---cCCCCCcCC--cchHHHHHHHcCC---------HHHHH
Q 010168          298 D--------------KFGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCTAVARGD---------SDFLK  349 (516)
Q Consensus       298 d--------------~~g~tpL~~A~~~~~~~~v~~Ll~---~g~~~~~~~--~~~~l~~A~~~~~---------~~~v~  349 (516)
                      +              ..|.||||+|+..|+.+++++|++   +|++++..+  |.||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              689999999999999999999999   999998865  6799999999888         79999


Q ss_pred             HHHHCCCCC-------CCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCC
Q 010168          350 RVLSNGVDP-------SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  393 (516)
Q Consensus       350 ~Ll~~g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  393 (516)
                      +|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus       203 ~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            999999998       67999999999999999999999999999876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=240.48  Aligned_cols=161  Identities=23%  Similarity=0.285  Sum_probs=153.5

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCcCCCCCC
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKFG  301 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~~~~~~d~~g  301 (516)
                      .+..+..|.||||+||..|+.+++++|++.|+ +++..+..|+||||+|+     ..++.+++++|++.|.+++..|..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            56677889999999999999999999999998 99999999999999999     6789999999999999999999999


Q ss_pred             ChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChH
Q 010168          302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLY  378 (516)
Q Consensus       302 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~  378 (516)
                      .||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999998765  6799999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 010168          379 LMAKLLLEAG  388 (516)
Q Consensus       379 ~~v~~Ll~~g  388 (516)
                      +++++|++++
T Consensus       264 ~iv~~Ll~~~  273 (276)
T 4hbd_A          264 EIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3e-29  Score=224.09  Aligned_cols=161  Identities=23%  Similarity=0.334  Sum_probs=141.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      +.++|+.||..|+.+.++.+++.+.  +..+ ..|+||||+|+.+|+.    +++++|+++|+++|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4578999999999999999998764  4455 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHH-----hChHHHHHH
Q 010168          310 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAAS-----EGLYLMAKL  383 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~-----~g~~~~v~~  383 (516)
                      ..|+.++.+                         ..+++++|+++|++++.+|..|+ ||||+|+.     .++.+++++
T Consensus        84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence            988754432                         24678888888889999999999 99999998     445679999


Q ss_pred             HHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010168          384 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       384 Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      |++ +|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            999 999999999999999999999999999999998664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.6e-30  Score=240.82  Aligned_cols=192  Identities=16%  Similarity=0.063  Sum_probs=158.3

Q ss_pred             HHHHHHcCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCC
Q 010168          251 LKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL  327 (516)
Q Consensus       251 v~~Ll~~g~~~~~~~---~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~  327 (516)
                      ++.|+++|++++..+   ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467889999887554   45678899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHhChHHHHHHHHHcCCCCCCCCCCCCCHH
Q 010168          328 NVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL  402 (516)
Q Consensus       328 ~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl  402 (516)
                      +..+  |.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            8765  6799999999999999999999999999986 6999999999  999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          403 DEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       403 ~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +.++..+.   .++|++.|++.            +...+...+.+|+|.|+..++
T Consensus       161 ~~~~~~~~---~~~ll~~ga~~------------~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          161 WDYSAEFG---DELSFREGESV------------TVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             SCBCCSST---TBCCBCTTCEE------------EEEESSCTTCSSEEEEEETTE
T ss_pred             HHHhhccc---cccCccccccc------------cccccCCCcccHHHHHHHcCC
Confidence            96655443   24566666542            122344456689999888777

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=2.2e-28  Score=207.24  Aligned_cols=134  Identities=27%  Similarity=0.391  Sum_probs=114.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHH
Q 010168          258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  337 (516)
Q Consensus       258 g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~  337 (516)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|+++          
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~----------   70 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP----------   70 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS----------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC----------
Confidence            57888899999999999999999999999999999999999999999999988 8888888777766554          


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 010168          338 TAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL  416 (516)
Q Consensus       338 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~  416 (516)
                                           +.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        71 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           71 ---------------------NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             ---------------------SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             ---------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                 456666 7888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcccC
Q 010168          417 LEDAECT  423 (516)
Q Consensus       417 L~~~~~~  423 (516)
                      |+++|++
T Consensus       130 Ll~~Gad  136 (136)
T 1d9s_A          130 LHAATGD  136 (136)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            8888874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=8.7e-29  Score=231.09  Aligned_cols=160  Identities=22%  Similarity=0.227  Sum_probs=120.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcC
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARG  343 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~  343 (516)
                      ..|.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46999999999999999999999999999864 789999999999999999999999999998755  679999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHHc
Q 010168          344 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLEDA  420 (516)
Q Consensus       344 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-tpl~~A--~~~~~~~~v~~L~~~  420 (516)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998887 999999  888999999999999


Q ss_pred             ccCccc
Q 010168          421 ECTQLS  426 (516)
Q Consensus       421 ~~~~~~  426 (516)
                      |++...
T Consensus       162 ~a~~~~  167 (239)
T 1ycs_B          162 QEKMGI  167 (239)
T ss_dssp             HHHTTT
T ss_pred             hhcccc
Confidence            987654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=5.6e-28  Score=209.91  Aligned_cols=140  Identities=22%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cch-HHHHHHH
Q 010168          265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCTAVA  341 (516)
Q Consensus       265 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~-~l~~A~~  341 (516)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+  +.| |||+|+.
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            344555555555555555555555555555555555555555543 455555555555555544433  233 5555555


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 010168          342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  405 (516)
Q Consensus       342 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  405 (516)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            5555556666666667777888899999999999999999999999999999999999987633

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=4.8e-29  Score=246.70  Aligned_cols=183  Identities=15%  Similarity=0.010  Sum_probs=148.4

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCChHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPL  305 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpL  305 (516)
                      +..+.||||.||..|+.+++++|++.|+..   +..+..|.||||+||..|+.++|++|+++|+++   +..+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            344679999999999999999999998732   234557889999999999999999999999863   333333 8999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCc--C--CcchHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCTAV-ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~--~--~~~~~l~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  380 (516)
                      |+|+..|+.++|++|+++|++++.  .  .+.||||+|+ ..|+.+++++|+++|+       .|.||||+|+..|+.++
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTH
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHH
Confidence            999999999999999999998664  3  3679999999 9999999999999774       37899999999999999


Q ss_pred             HHHHHHcCCCCC-------------------------------------------------------------CCCCCCC
Q 010168          381 AKLLLEAGASVF-------------------------------------------------------------TKDRWGN  399 (516)
Q Consensus       381 v~~Ll~~g~~~~-------------------------------------------------------------~~~~~g~  399 (516)
                      +++|+++|++++                                                             .....+.
T Consensus       241 v~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~  320 (376)
T 2aja_A          241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  320 (376)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             HHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCcc
Confidence            999987664321                                                             1123467


Q ss_pred             CHHHHHHHcCCHHHHHHHHHccc
Q 010168          400 TPLDEGRMCGNKNLIKLLEDAEC  422 (516)
Q Consensus       400 tpl~~A~~~~~~~~v~~L~~~~~  422 (516)
                      ||||+|+..|+.+++++|++.+.
T Consensus       321 ~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          321 ELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHHHcCcHHHHHHHHcChH
Confidence            88999999999999999998764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=4.9e-27  Score=198.93  Aligned_cols=132  Identities=25%  Similarity=0.328  Sum_probs=117.0

Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CChHH
Q 010168          227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPL  305 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~tpL  305 (516)
                      .++..+..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            345566778999999999999999999999999999999999999999999 9999999999999999999999 99999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL  385 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  385 (516)
                      |+|+..|+.+++++|+++|++                               ++.+|..|+||||+|+..|+.+++++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~-------------------------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR-------------------------------LDVCDAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC-------------------------------CCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999998888888777776554                               4566777888888888888888888888


Q ss_pred             HcCCC
Q 010168          386 EAGAS  390 (516)
Q Consensus       386 ~~g~~  390 (516)
                      ++|+|
T Consensus       132 ~~Gad  136 (136)
T 1d9s_A          132 AATGD  136 (136)
T ss_dssp             HHHCC
T ss_pred             HcCCC
Confidence            88875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=3e-27  Score=205.35  Aligned_cols=143  Identities=22%  Similarity=0.291  Sum_probs=117.6

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCh-HHHH
Q 010168          229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLE  307 (516)
Q Consensus       229 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-pL~~  307 (516)
                      +..+..+.||||+|+..|+.+++++|++.|++++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345566889999999999999999999999999999999999999995 99999999999999999999999999 9999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA  372 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  372 (516)
                      |+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            999999999999999999999765  67999999999999999999999999999999999998744

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.3e-25  Score=186.99  Aligned_cols=126  Identities=44%  Similarity=0.661  Sum_probs=96.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHH
Q 010168          267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD  346 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~  346 (516)
                      +|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++                    
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------------   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--------------------
Confidence            477888888888888888888888888888888888888888777777666666665544                    


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       347 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                                 ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        61 -----------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           61 -----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -----------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                       445566677788888877777888888877777777777788888888888888888888777763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=7.7e-26  Score=191.54  Aligned_cols=90  Identities=36%  Similarity=0.471  Sum_probs=49.3

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..+.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             ChHHHHHHHH
Q 010168          313 HDGVTSLLVK  322 (516)
Q Consensus       313 ~~~~v~~Ll~  322 (516)
                      +.+++++|++
T Consensus        92 ~~~~v~~Ll~  101 (136)
T 2jab_A           92 HLEIAEVLLK  101 (136)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4444444433

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.3e-25  Score=190.20  Aligned_cols=124  Identities=28%  Similarity=0.371  Sum_probs=117.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHc
Q 010168          265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR  342 (516)
Q Consensus       265 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~  342 (516)
                      ...|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            4568999999999999999999999999999999999999999999999999999999999998755  67999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       343 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.2e-26  Score=196.85  Aligned_cols=134  Identities=37%  Similarity=0.487  Sum_probs=107.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHH
Q 010168          258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  337 (516)
Q Consensus       258 g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~  337 (516)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++           
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------   68 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-----------   68 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----------
Confidence            5677 6788899999999999999999999999999999999999999988888877777777766554           


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          338 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       338 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                                          ++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|
T Consensus        69 --------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           69 --------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             --------------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             --------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence                                556677788999999999999999999999999998999999999999888888888888


Q ss_pred             HHcccC
Q 010168          418 EDAECT  423 (516)
Q Consensus       418 ~~~~~~  423 (516)
                      .+.++.
T Consensus       129 ~~~~~s  134 (137)
T 3c5r_A          129 EKNESS  134 (137)
T ss_dssp             ------
T ss_pred             cccccC
Confidence            776553

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.3e-25  Score=196.17  Aligned_cols=155  Identities=25%  Similarity=0.279  Sum_probs=126.4

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED  282 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  282 (516)
                      .+..++..+.......++...  ...+..+..+.||||.|+. |+.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus         8 ~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   84 (162)
T 1ihb_A            8 ELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   84 (162)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            344444444444444444333  2335566778999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 010168          283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD  362 (516)
Q Consensus       283 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  362 (516)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.                              ++.++
T Consensus        85 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------~~~~~  134 (162)
T 1ihb_A           85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------VGHRN  134 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------TTCCC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------------CCCcC
Confidence            999999999999999999999999999999999998888877652                              34566


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          363 YDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       363 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      ..|.||||+|+..|+.+++++|+++|+|
T Consensus       135 ~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          135 HKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            7788888888888888888888888875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=4.7e-28  Score=239.61  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=153.8

Q ss_pred             hhHHHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCChHHHHHH
Q 010168          234 ELALRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAI  309 (516)
Q Consensus       234 ~~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpL~~A~  309 (516)
                      .+.++++.|+. .++.+++++++++|++       ++||||+||..|+.++|++|+++|+..   +..+..|.||||+|+
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            35678888887 5788999999998765       459999999999999999999999832   244567889999999


Q ss_pred             HcCChHHHHHHHHcCCC-----CCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HhChHHHH
Q 010168          310 KCGHDGVTSLLVKEGAS-----LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS--RDYDHRTPLHVAA-SEGLYLMA  381 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~-----~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~g~~~~v  381 (516)
                      ..|+.++|++|+++|++     ++..+ .||||+|+..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.++|
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            99999999999999975     34444 8999999999999999999999999887  8888999999999 99999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       382 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      ++|+++|++       |.||||+|+..|+.+++++|+++|++..
T Consensus       216 ~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          216 NFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            999998753       8999999999999999999999998653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=6.3e-26  Score=199.73  Aligned_cols=148  Identities=30%  Similarity=0.341  Sum_probs=124.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCC
Q 010168          265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  344 (516)
Q Consensus       265 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~  344 (516)
                      ...+.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+                   
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------------   71 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-------------------   71 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------------------
Confidence            3556789999999999999999999999999888889999888888887777777766554                   


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       345 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                                  +++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus        72 ------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           72 ------------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             ------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                        45567788999999999999999999999999999999999999999999999999999999999864


Q ss_pred             cccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          425 LSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      ..              ....+.+|+|.+...++
T Consensus       140 ~~--------------~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E          140 NA--------------QDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             TC--------------CCTTSCCHHHHHHHTTC
T ss_pred             CC--------------cCCCCCCHHHHHHHhCC
Confidence            32              23345577777766666

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=4.6e-27  Score=209.95  Aligned_cols=140  Identities=26%  Similarity=0.268  Sum_probs=107.5

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~A~~  310 (516)
                      +..|.||||.|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4577888888888888888888888 88888888888888888888888888888888888888777 778888888887


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      .|+.+++++|+++|++                               ++.+|..|+||||+|+..++.            
T Consensus       120 ~~~~~~v~~Ll~~ga~-------------------------------~~~~d~~g~tpl~~A~~~~~~------------  156 (183)
T 3deo_A          120 YVRPEVVEALVELGAD-------------------------------IEVEDERGLTALELAREILKT------------  156 (183)
T ss_dssp             TTCHHHHHHHHHHTCC-------------------------------TTCCCTTSCCHHHHHHHHHHT------------
T ss_pred             cCcHHHHHHHHHcCCC-------------------------------CcCCCCCCCCHHHHHHHhccC------------
Confidence            7777777777666554                               455667777777777765433            


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010168          391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  420 (516)
Q Consensus       391 ~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~  420 (516)
                           ..+.+||++|+..|+.+++++|.++
T Consensus       157 -----~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -----TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence                 3356778888888877888777653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=4.3e-25  Score=183.90  Aligned_cols=125  Identities=45%  Similarity=0.625  Sum_probs=112.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      |.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      +++++|+++|++                               ++.++..|.||||+|+..|+.+++++|+++|+|
T Consensus        82 ~~~~~Ll~~g~~-------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEAGAD-------------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHTTCC-------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCC-------------------------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            888777776654                               455667788888888888888888888888875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2.3e-25  Score=195.30  Aligned_cols=156  Identities=25%  Similarity=0.302  Sum_probs=123.5

Q ss_pred             hhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 010168          201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY  280 (516)
Q Consensus       201 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~  280 (516)
                      .+.+..++..+.......++.. ........+..+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   87 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH   87 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence            3444455544444444433332 234455667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 010168          281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS  360 (516)
Q Consensus       281 ~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~  360 (516)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++                               +.
T Consensus        88 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------------------------~~  136 (165)
T 3twr_A           88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-------------------------------TK  136 (165)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------------------TC
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------------------------cc
Confidence            99999999999999999999999999999988888877777766554                               55


Q ss_pred             CCCCCCcHHHHHHHhChHHHHHHHHHcCC
Q 010168          361 RDYDHRTPLHVAASEGLYLMAKLLLEAGA  389 (516)
Q Consensus       361 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  389 (516)
                      +|..|.||||+|+. |+.+++++|+++|+
T Consensus       137 ~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          137 KNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            66677788887655 77788888877764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.6e-25  Score=208.02  Aligned_cols=144  Identities=26%  Similarity=0.265  Sum_probs=123.8

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpL~~A~~  310 (516)
                      +..|.||||.||..|+.++++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|++++.++ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4578999999999999999999999 99999999999999999999999999999999999999988 789999999988


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      .|+.+++++|+++|+                               +++.+|..|+||||+|+..++             
T Consensus       121 ~g~~~~v~~Ll~~ga-------------------------------~~~~~d~~g~t~l~~A~~~~~-------------  156 (244)
T 3ui2_A          121 YVRPEVVEALVELGA-------------------------------DIEVEDERGLTALELAREILK-------------  156 (244)
T ss_dssp             TTCHHHHHHHHHTTC-------------------------------CTTCCCTTCCCHHHHHHHHHT-------------
T ss_pred             cCCHHHHHHHHHCCC-------------------------------CCCCCCCCCCcHHHHHHHHHh-------------
Confidence            888777777766655                               555677889999999986332             


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       391 ~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                          ...+.|||++|+..|+.+++++|++++.+.
T Consensus       157 ----~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          157 ----TTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             ----TCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             ----ccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence                256889999999999999999999876543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=8.3e-25  Score=189.16  Aligned_cols=123  Identities=28%  Similarity=0.372  Sum_probs=108.9

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+..|.||||.|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      .|+.+++++|+++|+++                               +.++..|.||||+|+..|+.+++++|
T Consensus       110 ~~~~~~v~~Ll~~ga~~-------------------------------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          110 HNHQEVVELLIKYGADV-------------------------------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCc-------------------------------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888877766654                               45666677777777777777777765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.2e-24  Score=188.62  Aligned_cols=151  Identities=26%  Similarity=0.334  Sum_probs=122.7

Q ss_pred             hhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 010168          203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED  282 (516)
Q Consensus       203 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~  282 (516)
                      .+..++..+.......++.. .....+..+..|.||||+ |..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            34444444444444444433 333455667779999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 010168          283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD  362 (516)
Q Consensus       283 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~  362 (516)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++                               ++.+|
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-------------------------------~~~~~  130 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-------------------------------LHRRD  130 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-------------------------------TTCCC
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-------------------------------CCCcC
Confidence            99999999999999999999999999999998888888776 44                               44566


Q ss_pred             CCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          363 YDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       363 ~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      ..|.||||+|+..|+.+++++|+++
T Consensus       131 ~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            6777888888888888888877753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.3e-24  Score=193.98  Aligned_cols=112  Identities=20%  Similarity=0.147  Sum_probs=98.3

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLAT  276 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~  276 (516)
                      ..+...+..+...+.......++.   ....+..+..|.||||+|+..|+.+++++|++.|++++.++ ..|+||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            456777888887777766666665   33456677789999999999999999999999999999998 88999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          277 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       277 ~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            999999999999999999999999999999998744

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=9.6e-25  Score=210.31  Aligned_cols=138  Identities=18%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcC------CCCCCChHHHHHHHc---CChHHHHHHHHcCCCCCcCC--cchHH
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVDINI------KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSFL  336 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~tpL~~A~~~---~~~~~v~~Ll~~g~~~~~~~--~~~~l  336 (516)
                      +.++||.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..+  +.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34456666666666666665665655555      355556666666654   55556666666665555433  44566


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 010168          337 CTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  411 (516)
Q Consensus       337 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  411 (516)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            666666666666666777777888889999999999999999999999999886      488999999998874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=7.7e-25  Score=195.41  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=118.1

Q ss_pred             hhhHHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCcCCCCCCC
Q 010168          233 AELALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN  302 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~------~~~v~~Ll~~g~~~~~~d~~g~  302 (516)
                      ..|.||||+|+..|+.    +++++|+++|+++|.+|..|+||||+|+..|+      .+++++|+++|+++|.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            6799999999999985    58999999999999999999999999999987      6889999999999999999999


Q ss_pred             -hHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChHHH
Q 010168          303 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       303 -tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~  380 (516)
                       ||||+|+..+..+                          .++.+++++|++ +|++++.+|..|+||||+|+..|+.++
T Consensus       116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999998755421                          122467777887 888889999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCC
Q 010168          381 AKLLLEAGASVFTKD  395 (516)
Q Consensus       381 v~~Ll~~g~~~~~~~  395 (516)
                      |++|.+...+.+.++
T Consensus       170 v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          170 LKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999988655444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=3.4e-24  Score=177.93  Aligned_cols=109  Identities=31%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCH
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS  345 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~  345 (516)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+                    
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------------------   64 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------------------   64 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC--------------------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------------------
Confidence            345555555555555555555555555555555555555555555555544444444333                    


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 010168          346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  405 (516)
Q Consensus       346 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  405 (516)
                                 +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        65 -----------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           65 -----------DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             -----------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             -----------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence                       3334445555666666666666666666666666666666666666665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=7e-24  Score=176.06  Aligned_cols=118  Identities=33%  Similarity=0.437  Sum_probs=101.0

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHc
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  311 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~  311 (516)
                      +..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 010168          312 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       312 ~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  380 (516)
                      |+.+++++|+++|+++                               +.+|..|.||||+|+..+..++
T Consensus        84 ~~~~~v~~Ll~~ga~~-------------------------------~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADK-------------------------------TVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TCHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-------------------------------CCcCCCCCCHHHHhCCHHHHHH
Confidence            8888888777766554                               4566677788887754444433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=1.5e-24  Score=183.78  Aligned_cols=128  Identities=25%  Similarity=0.341  Sum_probs=110.4

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+..|.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  389 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  389 (516)
                      .|+.+++++|+++|++                               ++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        86 ~~~~~~v~~Ll~~ga~-------------------------------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGAS-------------------------------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHHTTCC-------------------------------TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHHcCCC-------------------------------CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            8888877777766554                               55677778888888888888888887776554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.5e-24  Score=196.72  Aligned_cols=136  Identities=21%  Similarity=0.274  Sum_probs=95.1

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCChHHHHHHH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~  310 (516)
                      +..+.||||.||..|+.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888887 88888888888888888877


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                      .|+.+++++|+++|+                               +++.+|..|.||||+|+..|+.++++.|++.|++
T Consensus       150 ~~~~~~v~~Ll~~ga-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          150 KGYADIVQLLLAKGA-------------------------------RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HTCHHHHHHHHHHTC-------------------------------CSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHcCC-------------------------------CCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            777777766666554                               4445667778888888888888888888888877


Q ss_pred             CCCCCCCC
Q 010168          391 VFTKDRWG  398 (516)
Q Consensus       391 ~~~~~~~g  398 (516)
                      .+..+..|
T Consensus       199 ~~~~~~~~  206 (222)
T 3ehr_A          199 RTLSNAED  206 (222)
T ss_dssp             --------
T ss_pred             hhccchhh
Confidence            76665544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.1e-23  Score=194.11  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=110.1

Q ss_pred             HHHhhhccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCc
Q 010168          192 ILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRS  270 (516)
Q Consensus       192 ll~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t  270 (516)
                      .+......+...+..++..+.......++.....  .+..+..|.||||+||..|+.+++++|++. |++++.+|..|+|
T Consensus        65 ~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~t  142 (222)
T 3ehr_A           65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT  142 (222)
T ss_dssp             HHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCC
T ss_pred             hccccccccccccccccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCC
Confidence            3444556677888888887777776666655433  455667899999999999999999999999 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCc
Q 010168          271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA  332 (516)
Q Consensus       271 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~  332 (516)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|+..+..+.
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            99999999999999999999999999999999999999999999999999999988776554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.6e-21  Score=185.68  Aligned_cols=125  Identities=22%  Similarity=0.161  Sum_probs=117.1

Q ss_pred             CChHHHHHHHcCChHHHHHHHHcCCCCCc--------CCcchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 010168          301 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPL  369 (516)
Q Consensus       301 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L  369 (516)
                      ..++|+.|+..|+.+.++.+++.|++++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            45789999999999999999999998653        3478999999999   899999999999999999999999999


Q ss_pred             HHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcc
Q 010168          370 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL  425 (516)
Q Consensus       370 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~  425 (516)
                      |+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999998653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=194.07  Aligned_cols=140  Identities=26%  Similarity=0.152  Sum_probs=122.8

Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHHcCCCCCc--------CCcchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 010168          298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHR  366 (516)
Q Consensus       298 d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~  366 (516)
                      ...+.++|+.|+..|+.+.++.|++.|++++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|+
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            44467899999999999999999999999885        3467999999997   899999999999999999999999


Q ss_pred             cHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceee
Q 010168          367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTV  446 (516)
Q Consensus       367 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (516)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.                    +.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~--------------------g~  287 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT--------------------FA  287 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT--------------------TS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC--------------------CC
Confidence            9999999999999999999999999999999999999999999999999999999851                    34


Q ss_pred             cCCCCCCcccc
Q 010168          447 FPFHPWDEKVH  457 (516)
Q Consensus       447 ~~~~~~~~~~~  457 (516)
                      +|+|.|...++
T Consensus       288 tpLh~A~~~g~  298 (301)
T 2b0o_E          288 FPLHVDYSWVI  298 (301)
T ss_dssp             SCCC-------
T ss_pred             ChhHHHHhcCC
Confidence            88999887776

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=9.9e-22  Score=187.05  Aligned_cols=129  Identities=21%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCC
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFG  301 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g  301 (516)
                      ......++|+.|+..|+.+.++.+++.|+++      +..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|
T Consensus       126 ~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g  205 (278)
T 1dcq_A          126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG  205 (278)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred             ccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence            3445567888888888888888888888884      34477788888888888   78888888888888888888888


Q ss_pred             ChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 010168          302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA  381 (516)
Q Consensus       302 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  381 (516)
                      .||||+|+..|+.+++++|+++|+                               +++.+|..|.||||+|+..|+.+++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~ga-------------------------------d~~~~d~~g~tpL~~A~~~~~~~~v  254 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKA-------------------------------SIEIANESGETPLDIAKRLKHEHCE  254 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC-------------------------------CCCCccCCCCCHHHHHHHcCCHHHH
Confidence            888888888777777776666555                               5556778889999999999999999


Q ss_pred             HHHHHcCCC
Q 010168          382 KLLLEAGAS  390 (516)
Q Consensus       382 ~~Ll~~g~~  390 (516)
                      ++|+++|++
T Consensus       255 ~~Ll~~ga~  263 (278)
T 1dcq_A          255 ELLTQALSG  263 (278)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHcCCC
Confidence            999988875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.9e-22  Score=157.32  Aligned_cols=92  Identities=42%  Similarity=0.586  Sum_probs=87.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 010168          315 GVTSLLVKEGAS  326 (516)
Q Consensus       315 ~~v~~Ll~~g~~  326 (516)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=4.8e-22  Score=195.83  Aligned_cols=144  Identities=31%  Similarity=0.331  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          234 ELALRVNSAAYH-GDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       234 ~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+.|+||.|+.. |+.++++.|++.|+++|..+  ..|+||||+|+..|+.+++++|+++|+++|..|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456888999888 89999999888888888887  788899999999999999999999999988888888888888888


Q ss_pred             cCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC--
Q 010168          311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG--  388 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--  388 (516)
                      .|+.+++++|+++|+++                               +.+|..|.||||+|+..|+.+++++|+..+  
T Consensus       278 ~g~~~~v~~LL~~Gad~-------------------------------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          278 LGHTGLACLFLKRGADL-------------------------------GARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HTCHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             cCcHHHHHHHHHCcCCC-------------------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            88877777777766655                               455566666666666666666666666544  


Q ss_pred             -CCCCCCCCCCCCHHHHHHHc
Q 010168          389 -ASVFTKDRWGNTPLDEGRMC  408 (516)
Q Consensus       389 -~~~~~~~~~g~tpl~~A~~~  408 (516)
                       ++....+..+.|+++++...
T Consensus       327 ~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          327 EAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             ---------------------
T ss_pred             cccccccCCCCCCHHHHHHHH
Confidence             22333445566666665544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1.3e-21  Score=192.68  Aligned_cols=128  Identities=25%  Similarity=0.264  Sum_probs=98.3

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCcCCC--CCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcC
Q 010168          267 DGRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG  343 (516)
Q Consensus       267 ~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~  343 (516)
                      .+.||||.|+.. |+.++++.|+++|+++|..+  ..|.||||+|+..|+.+                            
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~----------------------------  249 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLL----------------------------  249 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHH----------------------------
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHH----------------------------
Confidence            344566666666 66666666666666666655  55666666655555554                            


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          344 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       344 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                         ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++..
T Consensus       250 ---iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          250 ---ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             ---HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             ---HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence               45555555666778888999999999999999999999999999999999999999999999999999999988855


Q ss_pred             cc
Q 010168          424 QL  425 (516)
Q Consensus       424 ~~  425 (516)
                      ..
T Consensus       327 ~~  328 (368)
T 3jue_A          327 EA  328 (368)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.8e-21  Score=151.71  Aligned_cols=92  Identities=39%  Similarity=0.533  Sum_probs=82.0

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 010168          332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  411 (516)
Q Consensus       332 ~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  411 (516)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56777777777777788888888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccC
Q 010168          412 NLIKLLEDAECT  423 (516)
Q Consensus       412 ~~v~~L~~~~~~  423 (516)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=2.3e-21  Score=181.19  Aligned_cols=113  Identities=29%  Similarity=0.315  Sum_probs=100.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCH
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS  345 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~  345 (516)
                      ..|.||||+||..|+.+++++|++ |+++|.+|..|.||||+|+..|+.+++++|+++|+++                  
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------  103 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL------------------  103 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT------------------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------------
Confidence            568999999999999999999999 9999999999999999999888888888777766655                  


Q ss_pred             HHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 010168          346 DFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  410 (516)
Q Consensus       346 ~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  410 (516)
                                   +.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus       104 -------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~  156 (244)
T 3ui2_A          104 -------------DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK  156 (244)
T ss_dssp             -------------TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT
T ss_pred             -------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh
Confidence                         4455 679999999999999999999999999999999999999999997544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.1e-21  Score=158.88  Aligned_cols=109  Identities=37%  Similarity=0.476  Sum_probs=84.9

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHc
Q 010168          263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR  342 (516)
Q Consensus       263 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~  342 (516)
                      .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+                 
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----------------   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-----------------   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-----------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-----------------
Confidence            467788888888888888888888888888888888888888888877777766666665554                 


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHH
Q 010168          343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL  402 (516)
Q Consensus       343 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl  402 (516)
                                    +++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||-
T Consensus        67 --------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           67 --------------DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             --------------CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             --------------CCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence                          4556677788888888888888888888888888888888888773

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=1.1e-20  Score=154.68  Aligned_cols=101  Identities=37%  Similarity=0.529  Sum_probs=95.9

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+..|.||||.|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            35568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCC
Q 010168          311 CGHDGVTSLLVKEGASLNVDD  331 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~  331 (516)
                      .|+.+++++|+++|++++..+
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHS
T ss_pred             CCCHHHHHHHHHcCCCCCcCC
Confidence            999999999999999988654

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.80  E-value=3.2e-19  Score=161.00  Aligned_cols=145  Identities=18%  Similarity=0.359  Sum_probs=135.1

Q ss_pred             HHhhccCCHHHHHHHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEec
Q 010168           62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG  141 (516)
Q Consensus        62 ~d~~~~~P~~~~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~  141 (516)
                      -.++..+|..+..++..+.+..+++++|+|++++++++..++..++.+.|+||++|+++|++++.+|||.+|.|+++.  
T Consensus        50 ~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--  127 (198)
T 2ptm_A           50 RHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--  127 (198)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--
Confidence            357889999999999999999999999999999999999999999999999999999999999999999999999986  


Q ss_pred             CCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       142 ~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .+|+  ++..+.+|++||+.+++.+.++.++++|.++|.++.+++++|..++..+|.....++..+..+
T Consensus       128 ~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r  194 (198)
T 2ptm_A          128 SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR  194 (198)
T ss_dssp             TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            5665  789999999999999999999999999999999999999999999999998887777665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=8.3e-19  Score=142.11  Aligned_cols=93  Identities=29%  Similarity=0.487  Sum_probs=85.8

Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       228 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                      ....+..+.|+||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHH
Q 010168          308 AIKCGHDGVTSLL  320 (516)
Q Consensus       308 A~~~~~~~~v~~L  320 (516)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.77  E-value=2.9e-18  Score=155.20  Aligned_cols=143  Identities=24%  Similarity=0.394  Sum_probs=131.8

Q ss_pred             HHhhccCCHHHHHHHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEec
Q 010168           62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG  141 (516)
Q Consensus        62 ~d~~~~~P~~~~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~  141 (516)
                      -.++..+|..+..++..+.+..+++++|+|.+++++++..++..++.+.|+||++|+++|++++.+|||.+|.|+++.  
T Consensus        51 ~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--  128 (202)
T 3bpz_A           51 DSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--  128 (202)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999999974  


Q ss_pred             CCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       142 ~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .+|++.   .+.+|++||+.+++.+.++.++++|.++|.++.+++++|..++..+|.....+...+..
T Consensus       129 ~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~  193 (202)
T 3bpz_A          129 KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  193 (202)
T ss_dssp             TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            566643   58999999999999999999999999999999999999999999999888777665543

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.77  E-value=1e-18  Score=148.51  Aligned_cols=128  Identities=17%  Similarity=0.251  Sum_probs=113.9

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeee---EEEecCCCee
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET---VSQLQPNSSF  158 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~---l~~l~~G~~f  158 (516)
                      .++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.+   +..+.+|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            4578999999999999999999999999999999999999999999999999999999889998888   9999999999


Q ss_pred             eccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       159 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      |+.+++.+.++.++++|.++|.++.++++.+..++..+|.....++..+..
T Consensus        85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~  135 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA  135 (142)
T ss_dssp             CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887776654

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.76  E-value=2.6e-18  Score=149.27  Aligned_cols=139  Identities=24%  Similarity=0.327  Sum_probs=124.7

Q ss_pred             hhccCCHHHHHHHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCC
Q 010168           64 LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED  143 (516)
Q Consensus        64 ~~~~~P~~~~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~  143 (516)
                      ++..+|..+..++..+.+.++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++.    
T Consensus         8 il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----   83 (160)
T 4f8a_A            8 VLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----   83 (160)
T ss_dssp             -------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE----
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE----
Confidence            5678899998999999999999999999999999999999999999999999999999999999999999999987    


Q ss_pred             CCeeeEEEecCCCeeeccccccC--CCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          144 GSEETVSQLQPNSSFGEVSILCN--IPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       144 g~~~~l~~l~~G~~fGe~~ll~~--~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                       ++.++..+.+|++||+.+++.+  .++.++++|.++|.++.++++.+.+++..+|.....++..+
T Consensus        84 -~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l  148 (160)
T 4f8a_A           84 -DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL  148 (160)
T ss_dssp             -TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             -CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence             3468999999999999999988  68999999999999999999999999999998888777665

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.76  E-value=2.7e-18  Score=149.38  Aligned_cols=129  Identities=22%  Similarity=0.364  Sum_probs=120.5

Q ss_pred             HHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCC
Q 010168           76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN  155 (516)
Q Consensus        76 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G  155 (516)
                      .....+..+++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++. ..+|++.++..+.+|
T Consensus        31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G  109 (161)
T 3idb_B           31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR  109 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESC
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCC
Confidence            3445667899999999999999999999999999999999999999999999999999999999 889999999999999


Q ss_pred             CeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhh
Q 010168          156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLT  205 (516)
Q Consensus       156 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~  205 (516)
                      ++||+.+++.+.++.+++.|.++|.++.++++.|..+++.+|...+.++.
T Consensus       110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~  159 (161)
T 3idb_B          110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE  159 (161)
T ss_dssp             CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred             CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988776554

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.75  E-value=5.3e-18  Score=145.31  Aligned_cols=128  Identities=19%  Similarity=0.272  Sum_probs=121.0

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .+++++.|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.++..+.+|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            46789999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +++.+.++..+++|.++|.++.++++.+..++..+|.....++..+..
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~  131 (149)
T 2pqq_A           84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR  131 (149)
T ss_dssp             GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888777766554

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.75  E-value=2.8e-18  Score=156.53  Aligned_cols=142  Identities=21%  Similarity=0.380  Sum_probs=132.6

Q ss_pred             hhccCCHHHHHHHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCC
Q 010168           64 LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED  143 (516)
Q Consensus        64 ~~~~~P~~~~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~  143 (516)
                      ++..+|..+..++..+++..++ ++|+|++++++++..++..++.+.|+||++|+++|++++.+|||.+|.|+++.   +
T Consensus        57 il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~  132 (212)
T 3ukn_A           57 LLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---D  132 (212)
T ss_dssp             TTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---S
T ss_pred             HHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---C
Confidence            7899999999999999998887 89999999999999999999999999999999999999999999999999986   3


Q ss_pred             CCeeeEEEecCCCeeeccccccCC--CcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          144 GSEETVSQLQPNSSFGEVSILCNI--PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       144 g~~~~l~~l~~G~~fGe~~ll~~~--~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      |  .++..+.+|++||+.+++.+.  ++.++++|.++|.++.+++++|.+++..+|.....++..+....
T Consensus       133 ~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l  200 (212)
T 3ukn_A          133 N--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL  200 (212)
T ss_dssp             S--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred             C--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence            4  678999999999999999998  99999999999999999999999999999999888887776543

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.74  E-value=6.3e-18  Score=150.90  Aligned_cols=132  Identities=16%  Similarity=0.209  Sum_probs=124.0

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  156 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~  156 (516)
                      .......+++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|+
T Consensus        33 ~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~  112 (187)
T 3gyd_A           33 YFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGA  112 (187)
T ss_dssp             GHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCC
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhh
Q 010168          157 SFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL  208 (516)
Q Consensus       157 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll  208 (516)
                      +||+.+++.+.++.++++|.++|.++.++++.|..++..+|.....++..+.
T Consensus       113 ~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~  164 (187)
T 3gyd_A          113 IIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL  164 (187)
T ss_dssp             EESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             eeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888775443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=9.2e-18  Score=135.89  Aligned_cols=87  Identities=39%  Similarity=0.612  Sum_probs=76.6

Q ss_pred             CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 010168          331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  410 (516)
Q Consensus       331 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  410 (516)
                      ++.++||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            35567777777777777777777788888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 010168          411 KNLIKLL  417 (516)
Q Consensus       411 ~~~v~~L  417 (516)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.74  E-value=8.2e-18  Score=145.01  Aligned_cols=130  Identities=15%  Similarity=0.240  Sum_probs=117.5

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeee
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG  159 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fG  159 (516)
                      ....+++++++|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||
T Consensus         9 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G   88 (154)
T 2z69_A            9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA   88 (154)
T ss_dssp             HHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEES
T ss_pred             hHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeec
Confidence            34568999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             ccccccCCC-cceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          160 EVSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       160 e~~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +.+++.+.+ +.++++|.++|.++.++++.|..++..+|.....++..+..
T Consensus        89 ~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~  139 (154)
T 2z69_A           89 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST  139 (154)
T ss_dssp             GGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999988 99999999999999999999999999999888887776654

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.71  E-value=2.3e-17  Score=148.15  Aligned_cols=129  Identities=18%  Similarity=0.150  Sum_probs=120.0

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      +..+++.+|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+
T Consensus         5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge   84 (194)
T 3dn7_A            5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD   84 (194)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c-ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          161 V-SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       161 ~-~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      . +++.+.++.++++|.++|.++.++++.|.+++..+|.....++..+..
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  134 (194)
T 3dn7_A           85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK  134 (194)
T ss_dssp             HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            7 677888999999999999999999999999999999888776655543

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.70  E-value=3.8e-17  Score=149.39  Aligned_cols=126  Identities=21%  Similarity=0.324  Sum_probs=116.9

Q ss_pred             hhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccc
Q 010168           85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL  164 (516)
Q Consensus        85 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll  164 (516)
                      |+++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       165 ~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .+.++.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  126 (216)
T 4ev0_A           81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR  126 (216)
T ss_dssp             HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887776666543

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.70  E-value=4.2e-17  Score=150.79  Aligned_cols=129  Identities=20%  Similarity=0.266  Sum_probs=120.4

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +++.+.++.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  133 (231)
T 3e97_A           85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR  133 (231)
T ss_dssp             TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888777666543

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.70  E-value=9.6e-17  Score=135.81  Aligned_cols=123  Identities=24%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecC
Q 010168           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP  154 (516)
Q Consensus        75 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~  154 (516)
                      +...+....+++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++.   +|  ..+..+.+
T Consensus        15 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g--~~~~~~~~   89 (139)
T 3ocp_A           15 PQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGP   89 (139)
T ss_dssp             HHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--EEEEEECT
T ss_pred             HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--EEEEEeCC
Confidence            44556778899999999999999999999999999999999999999999999999999999965   45  47899999


Q ss_pred             CCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchh
Q 010168          155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK  202 (516)
Q Consensus       155 G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  202 (516)
                      |++||+.+++.+.++.++++|.++|.++.++++.|.+++..+|...++
T Consensus        90 G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~  137 (139)
T 3ocp_A           90 GKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT  137 (139)
T ss_dssp             TCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred             CCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence            999999999999999999999999999999999999999999877654

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.69  E-value=3.8e-17  Score=151.79  Aligned_cols=132  Identities=17%  Similarity=0.203  Sum_probs=124.1

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCee
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  158 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~f  158 (516)
                      ....++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++|
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~   86 (237)
T 3fx3_A            7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF   86 (237)
T ss_dssp             HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred             HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       159 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      |+.+++.+.++.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  138 (237)
T 3fx3_A           87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH  138 (237)
T ss_dssp             CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888777666543

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.69  E-value=3.2e-17  Score=151.15  Aligned_cols=129  Identities=19%  Similarity=0.309  Sum_probs=121.4

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      ..++++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+
T Consensus         4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~   83 (227)
T 3d0s_A            4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGE   83 (227)
T ss_dssp             CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEee
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       161 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .+++.+.++.++++|.++|.++.++++.|.+++..+|.....++..+..
T Consensus        84 ~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  132 (227)
T 3d0s_A           84 LSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR  132 (227)
T ss_dssp             HHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887777766554

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.69  E-value=1e-16  Score=148.27  Aligned_cols=132  Identities=17%  Similarity=0.136  Sum_probs=122.5

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHH--hhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCC
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIR--VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  156 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~  156 (516)
                      .....+++++|+|..++++++..+...  ++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|+
T Consensus        14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~   93 (232)
T 1zyb_A           14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY   93 (232)
T ss_dssp             HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred             HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence            344567999999999999999999998  999999999999999999999999999999999989999999999999999


Q ss_pred             eeeccccccCCC-cceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          157 SFGEVSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       157 ~fGe~~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +||+.+++.+.+ +.++++|.++|.++.++++.|.+++..+|.....++..+..+
T Consensus        94 ~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  148 (232)
T 1zyb_A           94 LIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR  148 (232)
T ss_dssp             EECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred             eeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999999999988 899999999999999999999999999998887777666543

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.69  E-value=9.5e-17  Score=147.21  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=118.9

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe--eec
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS--FGE  160 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~--fGe  160 (516)
                      ++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999  799


Q ss_pred             cccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       161 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .+++.+.++..+++|.++|.++.++++.|.+++..+|.....++..+..
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~  131 (220)
T 3dv8_A           83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT  131 (220)
T ss_dssp             GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888777666554

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.68  E-value=5.7e-17  Score=136.78  Aligned_cols=119  Identities=17%  Similarity=0.276  Sum_probs=108.4

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEE--EecCCCeeec
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVS--QLQPNSSFGE  160 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~--~l~~G~~fGe  160 (516)
                      ++++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|++|.|+++ ...+|++.++.  .+.+|++||+
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe   84 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD   84 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence            46889999999999999999999999999999999999999999999999999965 57788888777  9999999999


Q ss_pred             ccc---ccCCC------cceEEEEeeeeeEEEeeccchhhHHHhhhccchh
Q 010168          161 VSI---LCNIP------QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK  202 (516)
Q Consensus       161 ~~l---l~~~~------~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  202 (516)
                      .++   +.+.+      +.++++|.++|.++.++++.|.+++..+|....+
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k  135 (137)
T 1wgp_A           85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS  135 (137)
T ss_dssp             HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred             HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence            985   77664      5789999999999999999999999999876543

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.66  E-value=5.4e-17  Score=149.61  Aligned_cols=130  Identities=15%  Similarity=0.233  Sum_probs=121.9

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      ..++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+
T Consensus         7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~   86 (227)
T 3dkw_A            7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE   86 (227)
T ss_dssp             SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence            45789999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             cccccCCC-cceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          161 VSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       161 ~~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .+++.+.+ +.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  137 (227)
T 3dkw_A           87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR  137 (227)
T ss_dssp             TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999 999999999999999999999999999998887776666543

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.66  E-value=3.2e-16  Score=135.05  Aligned_cols=120  Identities=25%  Similarity=0.337  Sum_probs=109.8

Q ss_pred             HHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        78 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ......+++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|++|.|+++.   +|  ..+..+.+|++
T Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~--~~~~~~~~G~~  107 (154)
T 3pna_A           33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGS  107 (154)
T ss_dssp             HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TT--EEEEEECTTCE
T ss_pred             HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CC--EEEEEecCCCE
Confidence            34566789999999999999999999999999999999999999999999999999999997   44  36788999999


Q ss_pred             eeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchh
Q 010168          158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK  202 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  202 (516)
                      ||+.+++.+.++.++++|.++|.++.++++.|..++..++...+.
T Consensus       108 fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~  152 (154)
T 3pna_A          108 FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  152 (154)
T ss_dssp             ECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred             eeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence            999999999999999999999999999999999999998866554

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.66  E-value=2.8e-16  Score=145.12  Aligned_cols=128  Identities=11%  Similarity=0.152  Sum_probs=108.5

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      ...+++.++|.++++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-CcceEEEEeeeeeEEEeeccchhhHHHhh-----hccchhhhhhhhh
Q 010168          162 SILCNI-PQPYTVCICELSRLLRIDKQSFTNILEIY-----FCDGRKVLTNLLE  209 (516)
Q Consensus       162 ~ll~~~-~~~~tv~a~~~~~l~~l~~~~~~~ll~~~-----~~~~~~~l~~ll~  209 (516)
                      +++.+. ++.+++.|.++|.++.++++.|.+++..+     |.....++..+..
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~  143 (230)
T 3iwz_A           90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK  143 (230)
T ss_dssp             GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence            999875 78999999999999999999999999999     8777666665544

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.66  E-value=1.8e-16  Score=133.81  Aligned_cols=125  Identities=21%  Similarity=0.297  Sum_probs=114.0

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeee
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG  159 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fG  159 (516)
                      ....+++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++..+       ...+.+|++||
T Consensus         8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G   80 (138)
T 1vp6_A            8 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFG   80 (138)
T ss_dssp             HHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEEC
T ss_pred             HHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEee
Confidence            35568999999999999999999999999999999999999999999999999999998632       24789999999


Q ss_pred             ccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          160 EVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       160 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      +.+++.+.++..+++|.++|.++.++++.|..++..+|.....++..+..+.
T Consensus        81 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~  132 (138)
T 1vp6_A           81 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  132 (138)
T ss_dssp             HHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             ehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998888777766543

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.64  E-value=4.4e-16  Score=152.34  Aligned_cols=128  Identities=20%  Similarity=0.332  Sum_probs=120.1

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      ...+|+++|+|+.++++++..+...++.+.|++|++|+++|++++.+|||.+|.|++++.+.+|++ ++..+.+|++||+
T Consensus        11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe   89 (333)
T 4ava_A           11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE   89 (333)
T ss_dssp             CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred             hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence            457899999999999999999999999999999999999999999999999999999998888986 8999999999999


Q ss_pred             cccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       161 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .+++.+.++.++++|.++|.++.++++.|..++ .+|.....++..+...
T Consensus        90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~  138 (333)
T 4ava_A           90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR  138 (333)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 8998888877766543

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.64  E-value=2.5e-16  Score=145.71  Aligned_cols=125  Identities=14%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             hcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccccc
Q 010168           86 EKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC  165 (516)
Q Consensus        86 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~  165 (516)
                      .++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.
T Consensus        13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~   92 (232)
T 2gau_A           13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA   92 (232)
T ss_dssp             GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred             cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence            36789999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             CCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          166 NIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       166 ~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +.++.++++|.++|.++.++++.|.+++..+|.....++..+..+
T Consensus        93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  137 (232)
T 2gau_A           93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  137 (232)
T ss_dssp             TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888877766543

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.63  E-value=8.1e-16  Score=148.08  Aligned_cols=136  Identities=19%  Similarity=0.278  Sum_probs=126.9

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEec-CCCCeeeEEEecCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG-EDGSEETVSQLQPN  155 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~-~~g~~~~l~~l~~G  155 (516)
                      ....+..+++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++... .+|++..+..+.+|
T Consensus       151 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G  230 (299)
T 3shr_A          151 KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKG  230 (299)
T ss_dssp             HHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETT
T ss_pred             HHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCC
Confidence            34567788999999999999999999999999999999999999999999999999999999976 68899999999999


Q ss_pred             CeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhccc
Q 010168          156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKE  212 (516)
Q Consensus       156 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~~  212 (516)
                      ++||+.+++.+.++.++++|.++|.++.++++.|..++..+|.....++..+..+..
T Consensus       231 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~  287 (299)
T 3shr_A          231 DWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAK  287 (299)
T ss_dssp             CEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred             CEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999998888765543

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.62  E-value=1.4e-15  Score=138.28  Aligned_cols=122  Identities=15%  Similarity=0.201  Sum_probs=110.4

Q ss_pred             cCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCC-
Q 010168           89 SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-  167 (516)
Q Consensus        89 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~-  167 (516)
                      ++++.++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+. 
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~   81 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ   81 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence            5677899999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             CcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          168 PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       168 ~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      ++.+++.|.++|.++.++.+.|..++..+|.....++..+..+
T Consensus        82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  124 (210)
T 3ryp_A           82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  124 (210)
T ss_dssp             BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            8999999999999999999999999999998877776666543

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.62  E-value=1.5e-15  Score=152.55  Aligned_cols=130  Identities=22%  Similarity=0.378  Sum_probs=119.7

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  156 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~  156 (516)
                      .......+++++++|++++++++..++..+..+.|++|++|+++|+.++.+|+|++|.|+++. ..+|++..+..+.+|+
T Consensus       139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~  217 (416)
T 3tnp_B          139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG  217 (416)
T ss_dssp             HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCC
T ss_pred             HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCC
Confidence            445667899999999999999999999999999999999999999999999999999999998 7889999999999999


Q ss_pred             eeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          157 SFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       157 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      +||+.+++.+.++.++++|.++|.++.++++.|..++..++.....++..+
T Consensus       218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~  268 (416)
T 3tnp_B          218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF  268 (416)
T ss_dssp             EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSS
T ss_pred             EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHH
Confidence            999999999999999999999999999999999999998887655444333

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.60  E-value=3.8e-15  Score=135.06  Aligned_cols=116  Identities=14%  Similarity=0.211  Sum_probs=107.4

Q ss_pred             CCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCC----Cc
Q 010168           94 CSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI----PQ  169 (516)
Q Consensus        94 l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~----~~  169 (516)
                      ++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++||+.+++.+.    ++
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~   80 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER   80 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence            58899999999999999999999999999999999999999999998999999999999999999999999888    89


Q ss_pred             ceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       170 ~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .+++.|.++|.++.++.+.|.+++..+|.....++..+..
T Consensus        81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  120 (207)
T 2oz6_A           81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD  120 (207)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888777666554

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=128.29  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=104.7

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhcceeC-CCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCee
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  158 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~-~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~f  158 (516)
                      ....+++++++|..++++.+..+...++.+.|+ +|++|+++|++++.+|||++|.|+++.  .+|++   ..+.+|++|
T Consensus        13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~f   87 (134)
T 2d93_A           13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSF   87 (134)
T ss_dssp             HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEE
T ss_pred             HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCcc
Confidence            445678999999999999999999999999999 999999999999999999999999984  56765   558999999


Q ss_pred             eccccccCCCcceEE-EEeeeeeEEEeeccchhhHHHhhhcc
Q 010168          159 GEVSILCNIPQPYTV-CICELSRLLRIDKQSFTNILEIYFCD  199 (516)
Q Consensus       159 Ge~~ll~~~~~~~tv-~a~~~~~l~~l~~~~~~~ll~~~~~~  199 (516)
                      |+.+++.+.++.+++ .|.++|.++.++++.|..++...+..
T Consensus        88 G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~  129 (134)
T 2d93_A           88 GITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS  129 (134)
T ss_dssp             SCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred             ChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence            999999999998898 99999999999999999998776644

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.59  E-value=1e-14  Score=139.69  Aligned_cols=131  Identities=19%  Similarity=0.295  Sum_probs=118.9

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCC-CeeeEEEecCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG-SEETVSQLQPN  155 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g-~~~~l~~l~~G  155 (516)
                      ....+..+++++++|..++.+.+..+...++.+.|++|++|+++|++++.+|+|.+|.|++++...+| ++..+..+.+|
T Consensus       151 ~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G  230 (291)
T 2qcs_B          151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPS  230 (291)
T ss_dssp             HHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTT
T ss_pred             HHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCC
Confidence            34566678999999999999999999999999999999999999999999999999999999877666 45789999999


Q ss_pred             CeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       156 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      ++||+.+++.+.++.+++.|.++|.++.++++.|..++..+|......+..+
T Consensus       231 ~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~  282 (291)
T 2qcs_B          231 DYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY  282 (291)
T ss_dssp             CEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred             CEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987666655444

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.59  E-value=9.5e-15  Score=140.53  Aligned_cols=125  Identities=23%  Similarity=0.257  Sum_probs=114.0

Q ss_pred             HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecC
Q 010168           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP  154 (516)
Q Consensus        75 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~  154 (516)
                      +...+....+++++++|+.++++++..+...++.+.|++|++|+++|++++.+|+|++|.|+++.   +|  ..+..+.+
T Consensus        31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g--~~~~~~~~  105 (299)
T 3shr_A           31 ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGP  105 (299)
T ss_dssp             HHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---TT--EEEEEECT
T ss_pred             HHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CC--EEEEEeCC
Confidence            45566778899999999999999999999999999999999999999999999999999999975   44  57899999


Q ss_pred             CCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhh
Q 010168          155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL  204 (516)
Q Consensus       155 G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l  204 (516)
                      |++||+.+++.+.++.++++|.++|.++.++++.|..++...+.......
T Consensus       106 G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~  155 (299)
T 3shr_A          106 GKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY  155 (299)
T ss_dssp             TCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHH
Confidence            99999999999999999999999999999999999999998885544433

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.56  E-value=2.7e-15  Score=136.74  Aligned_cols=124  Identities=18%  Similarity=0.206  Sum_probs=107.6

Q ss_pred             cccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccC
Q 010168           87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN  166 (516)
Q Consensus        87 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~  166 (516)
                      .-|+|...++.....+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~   82 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS   82 (213)
T ss_dssp             ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred             ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence            34788899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             C-CcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          167 I-PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       167 ~-~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      . ++.+++.|.++|.++.++++.|.+++..+|.....++..+..+
T Consensus        83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  127 (213)
T 1o5l_A           83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH  127 (213)
T ss_dssp             SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            6 8999999999999999999999999999998888877776654

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.56  E-value=8.1e-15  Score=137.92  Aligned_cols=120  Identities=14%  Similarity=0.196  Sum_probs=108.4

Q ss_pred             ccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCC-Cc
Q 010168           91 FKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-PQ  169 (516)
Q Consensus        91 f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~-~~  169 (516)
                      +..++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++||+.+++.+. ++
T Consensus        54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~  133 (260)
T 3kcc_A           54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER  133 (260)
T ss_dssp             -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred             cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999888 89


Q ss_pred             ceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       170 ~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .++++|.++|.++.++++.|.+++..+|.....++..+..+
T Consensus       134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~  174 (260)
T 3kcc_A          134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  174 (260)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877776665543

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.56  E-value=2.1e-14  Score=147.23  Aligned_cols=136  Identities=23%  Similarity=0.268  Sum_probs=124.4

Q ss_pred             HHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCC--eeeEEEe
Q 010168           75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS--EETVSQL  152 (516)
Q Consensus        75 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~--~~~l~~l  152 (516)
                      +........+++++++|.+++++++..+...+..+.|++|++|+++|++++.+|+|.+|.|+++....+|+  +.++..+
T Consensus        34 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~  113 (469)
T 1o7f_A           34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTL  113 (469)
T ss_dssp             HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEE
T ss_pred             HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEc
Confidence            34445667889999999999999999999999999999999999999999999999999999999888886  4889999


Q ss_pred             cCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          153 QPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       153 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      .+|++||+.+ +.+.++.++++|.++|.++.++++.|..++..+|.....++..+..+.
T Consensus       114 ~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l  171 (469)
T 1o7f_A          114 GIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVM  171 (469)
T ss_dssp             CTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCS
T ss_pred             cCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9999999999 999999999999999999999999999999999998888776665543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.56  E-value=1.6e-14  Score=138.45  Aligned_cols=127  Identities=24%  Similarity=0.341  Sum_probs=115.5

Q ss_pred             HHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        78 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ......+++++|+|+.++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++.   +|  ..+..+.+|++
T Consensus        34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~  108 (291)
T 2qcs_B           34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGS  108 (291)
T ss_dssp             HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCE
T ss_pred             HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCc
Confidence            34567789999999999999999999999999999999999999999999999999999997   55  56899999999


Q ss_pred             eeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      ||+.+++.+.++.+++.|.++|.++.++++.|..++..++.....++..++.
T Consensus       109 fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  160 (291)
T 2qcs_B          109 FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS  160 (291)
T ss_dssp             ECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988776665554443

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.56  E-value=7.3e-16  Score=151.89  Aligned_cols=123  Identities=21%  Similarity=0.311  Sum_probs=0.8

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .+.+++.|+|+++++++++.+...++.+.|+|||+|+++||+++.+|+|.+|.++++..+       ...+++|++||+.
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~  299 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEM  299 (355)
T ss_dssp             HC------------------------------------------------------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeeh
Confidence            347899999999999999999999999999999999999999999999999999998743       2579999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      +++.+.++.++++|.++|+++.++++++.++++++|.....+.+.+.++.
T Consensus       300 ~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl  349 (355)
T 3beh_A          300 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  349 (355)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888776665543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.6e-15  Score=138.31  Aligned_cols=122  Identities=25%  Similarity=0.329  Sum_probs=110.3

Q ss_pred             cHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeec
Q 010168           81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  160 (516)
Q Consensus        81 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe  160 (516)
                      ...++++.|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++.   +|+  .+..+.+|++||+
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe   79 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE   79 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence            45789999999999999999999999999999999999999999999999999999986   444  3689999999999


Q ss_pred             cccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       161 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      .+++.+.++.+++.|.++|.++.++++.|..++...+.....+...+
T Consensus        80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  126 (246)
T 3of1_A           80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDL  126 (246)
T ss_dssp             HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHH
T ss_pred             hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999988886555544333

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.55  E-value=2.7e-15  Score=137.51  Aligned_cols=120  Identities=14%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccc
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS  162 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~  162 (516)
                      .+++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++ .+.+|++.++..+.+|++||+  
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~--   80 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT--   80 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence            46789999999999999999999999999999999999999999999999999995 688999999999999999998  


Q ss_pred             cccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          163 ILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       163 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                           ++.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~  123 (220)
T 2fmy_A           81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL  123 (220)
T ss_dssp             -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence                 7889999999999999999999999999998887777666543

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.54  E-value=9.5e-15  Score=146.67  Aligned_cols=129  Identities=18%  Similarity=0.306  Sum_probs=111.7

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCC------CCeeeEEEe
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED------GSEETVSQL  152 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~------g~~~~l~~l  152 (516)
                      ..+..+++++++|..++++++..+...+..+.|++|++|+++|++++.+|||.+|.|+++....+      |++..+..+
T Consensus       263 ~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l  342 (416)
T 3tnp_B          263 KMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC  342 (416)
T ss_dssp             SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEE
T ss_pred             HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEe
Confidence            34556889999999999999999999999999999999999999999999999999999987665      888899999


Q ss_pred             cCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhh
Q 010168          153 QPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL  207 (516)
Q Consensus       153 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~l  207 (516)
                      .+|++||+.+++.+.++.++++|.++|.++.|+++.|..++..++......+..+
T Consensus       343 ~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~  397 (416)
T 3tnp_B          343 FRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY  397 (416)
T ss_dssp             CTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----
T ss_pred             CCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998886655544443

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.54  E-value=2.8e-15  Score=137.63  Aligned_cols=119  Identities=12%  Similarity=0.069  Sum_probs=110.3

Q ss_pred             HhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccc
Q 010168           84 YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  163 (516)
Q Consensus        84 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~l  163 (516)
                      +++++|+|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++ .+.+|++.++..+.+|++||    
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence            4678999999999999999999999999999999999999999999999999997 78899999999999999999    


Q ss_pred             ccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          164 LCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       164 l~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                         .++.+++.|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  119 (222)
T 1ft9_A           76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA  119 (222)
T ss_dssp             ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence               67889999999999999999999999999998888877666543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=144.56  Aligned_cols=130  Identities=21%  Similarity=0.304  Sum_probs=117.5

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCC-eeeEEEecCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS-EETVSQLQPN  155 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~-~~~l~~l~~G  155 (516)
                      ....+..+++++++|..++++++..+...+..+.|++|++|+++|++++.+|||.+|.|++++...+|+ +..+..+++|
T Consensus       242 ~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~G  321 (381)
T 4din_B          242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPS  321 (381)
T ss_dssp             HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTT
T ss_pred             HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCC
Confidence            345667889999999999999999999999999999999999999999999999999999998766655 5679999999


Q ss_pred             CeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhh
Q 010168          156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTN  206 (516)
Q Consensus       156 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~  206 (516)
                      ++||+.+++.+.++.+++.|.++|.++.++++.|..++..++......+..
T Consensus       322 d~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~  372 (381)
T 4din_B          322 DYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQR  372 (381)
T ss_dssp             CEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHH
T ss_pred             CEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888665554433

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=143.32  Aligned_cols=127  Identities=27%  Similarity=0.348  Sum_probs=115.4

Q ss_pred             HHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        78 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ......++++.++|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++.   +|  ..+..+.+|++
T Consensus       125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~  199 (381)
T 4din_B          125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGS  199 (381)
T ss_dssp             HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCC
T ss_pred             HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCE
Confidence            35567889999999999999999999999999999999999999999999999999999997   44  36788999999


Q ss_pred             eeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      ||+.+++.+.++.++++|.++|.++.++++.|..++..++.....++..++.
T Consensus       200 fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~  251 (381)
T 4din_B          200 FGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS  251 (381)
T ss_dssp             BCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998776665554443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.6e-14  Score=133.21  Aligned_cols=119  Identities=18%  Similarity=0.399  Sum_probs=108.9

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  156 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~  156 (516)
                      ....+..+++++++|..++++.+..+...++.+.|++|++|+++|++++.+|+|.+|.++++....   . .+..+.+|+
T Consensus       119 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~  194 (246)
T 3of1_A          119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHD  194 (246)
T ss_dssp             HHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTC
T ss_pred             HHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCC
Confidence            345667889999999999999999999999999999999999999999999999999999997322   2 789999999


Q ss_pred             eeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhcc
Q 010168          157 SFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCD  199 (516)
Q Consensus       157 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~  199 (516)
                      +||+.+++.+.++.+++.|.++|.++.++++.|..++..+|..
T Consensus       195 ~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~  237 (246)
T 3of1_A          195 YFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDV  237 (246)
T ss_dssp             EECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred             cccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence            9999999999999999999999999999999999999877643

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.50  E-value=1.9e-14  Score=134.53  Aligned_cols=123  Identities=15%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             hhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccc
Q 010168           85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL  164 (516)
Q Consensus        85 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll  164 (516)
                      +.+...+..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+  ++
T Consensus        11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l   88 (250)
T 3e6c_C           11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY   88 (250)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred             hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence            4444556899999999999999999999999999999999999999999999999999999999999999999999  77


Q ss_pred             cCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       165 ~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      .+. +.++++|.++|.++.++++.|..++..+|.....++..+..+
T Consensus        89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  133 (250)
T 3e6c_C           89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  133 (250)
T ss_dssp             CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            777 999999999999999999999999999998887777666543

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.47  E-value=1.8e-13  Score=126.90  Aligned_cols=118  Identities=13%  Similarity=0.146  Sum_probs=104.4

Q ss_pred             cCCCHHHHHHHHH--HhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc
Q 010168           92 KGCSSEFINQIVI--RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ  169 (516)
Q Consensus        92 ~~l~~~~l~~l~~--~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~  169 (516)
                      ++++++++..+..  .++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+ +|++||+.+++.+.+.
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~   80 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS   80 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence            3678899999885  589999999999999999999999999999999999999999999999 9999999999988864


Q ss_pred             --ceEEEEe-eeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          170 --PYTVCIC-ELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       170 --~~tv~a~-~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                        ..++.|. ++|.++.++++.|..++..+|.....++..+..+
T Consensus        81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  124 (238)
T 2bgc_A           81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQ  124 (238)
T ss_dssp             SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence              6777787 5999999999999999999998887777666543

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.43  E-value=2.4e-13  Score=126.49  Aligned_cols=114  Identities=24%  Similarity=0.274  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhh---cceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCC--cc
Q 010168           96 SEFINQIVIRVH---EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIP--QP  170 (516)
Q Consensus        96 ~~~l~~l~~~~~---~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~--~~  170 (516)
                      ++++..+.....   .+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.+  +.
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~  109 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF  109 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence            567777777777   9999999999999999999999999999999999999999999999999999999998876  45


Q ss_pred             eEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       171 ~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      ++++|.++|.++.++++.|.+++..+|.....++..+..
T Consensus       110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  148 (243)
T 3la7_A          110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS  148 (243)
T ss_dssp             EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            899999999999999999999999999888777666554

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.42  E-value=9.3e-13  Score=135.00  Aligned_cols=121  Identities=18%  Similarity=0.298  Sum_probs=107.2

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhc-ceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCee
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  158 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~f  158 (516)
                      .....++++++|..++++.+..+...+.. +.|++|++|+++|++++.+|||.+|.|+++.   +|+ .++..+.+|++|
T Consensus       334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~~f  409 (469)
T 1o7f_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDDF  409 (469)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTCEE
T ss_pred             HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCCEE
Confidence            44678999999999999999999999985 4999999999999999999999999999987   333 378999999999


Q ss_pred             eccccccCCCcceEEEEee-eeeEEEeeccchhhHHHhhhccchhhh
Q 010168          159 GEVSILCNIPQPYTVCICE-LSRLLRIDKQSFTNILEIYFCDGRKVL  204 (516)
Q Consensus       159 Ge~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~~l  204 (516)
                      |+.+++.+.++.+++.|.+ +|.++.++++.|..++..+|.....+.
T Consensus       410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~  456 (469)
T 1o7f_A          410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK  456 (469)
T ss_dssp             CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred             EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence            9999999999999999998 699999999999999999998766643

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.40  E-value=1.3e-12  Score=145.99  Aligned_cols=120  Identities=27%  Similarity=0.347  Sum_probs=109.8

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecC--CCCeeeEEEecCCCe
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE--DGSEETVSQLQPNSS  157 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~--~g~~~~l~~l~~G~~  157 (516)
                      .....|+++++|+.+++.++..|+..+.++.|++|++||++||.++.+|+|++|.|.|+....  ++.+..+..+.+|+.
T Consensus        39 ~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~s  118 (999)
T 4f7z_A           39 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTA  118 (999)
T ss_dssp             HHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCE
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcc
Confidence            344678999999999999999999999999999999999999999999999999999998643  345678899999999


Q ss_pred             eeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccc
Q 010168          158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDG  200 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~  200 (516)
                      ||+ +++.+.||+++++|.++|.++++++.+|..++..+++..
T Consensus       119 FGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~  160 (999)
T 4f7z_A          119 FGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM  160 (999)
T ss_dssp             ECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             hhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence            999 899999999999999999999999999999998887543

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.35  E-value=1.8e-12  Score=137.41  Aligned_cols=121  Identities=19%  Similarity=0.329  Sum_probs=111.2

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhh-cceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVH-EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ....+.++++++|.+++++++..+...+. .+.|++|++|+++|++++.+|+|++|.|+++..   |+ .++..+.+|++
T Consensus        28 ~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~il~~l~~Gd~  103 (694)
T 3cf6_E           28 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDD  103 (694)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EEEEEEETTCE
T ss_pred             HHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EEEEEeCCCCE
Confidence            34567899999999999999999999998 689999999999999999999999999999973   44 68999999999


Q ss_pred             eeccccccCCCcceEEEEee-eeeEEEeeccchhhHHHhhhccchhh
Q 010168          158 FGEVSILCNIPQPYTVCICE-LSRLLRIDKQSFTNILEIYFCDGRKV  203 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~~  203 (516)
                      ||+.+++.+.++.++++|.+ +|.++.++++.|..++..+|.....+
T Consensus       104 fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l  150 (694)
T 3cf6_E          104 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL  150 (694)
T ss_dssp             ECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred             eehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence            99999999999999999999 59999999999999999999887665

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.35  E-value=2.4e-12  Score=115.32  Aligned_cols=81  Identities=22%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             ceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccc
Q 010168          109 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQS  188 (516)
Q Consensus       109 ~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~  188 (516)
                      +.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+ +++.+.++.+++.|.++|.++.++++.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~   80 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA   80 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence            5799999999999999999999999999999899999999999999999999 999999999999999999999999999


Q ss_pred             hh
Q 010168          189 FT  190 (516)
Q Consensus       189 ~~  190 (516)
                      |.
T Consensus        81 ~~   82 (195)
T 3b02_A           81 MD   82 (195)
T ss_dssp             CC
T ss_pred             cC
Confidence            98

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.25  E-value=9.3e-12  Score=112.13  Aligned_cols=86  Identities=24%  Similarity=0.292  Sum_probs=78.9

Q ss_pred             HHHhhcceeCCCCeEEecCCcc--CeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeee
Q 010168          103 VIRVHEEFFLPGEVIMEQGNVV--DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSR  180 (516)
Q Consensus       103 ~~~~~~~~~~~ge~i~~~g~~~--~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~  180 (516)
                      ...++.+.|++|++|+++|+++  +.+|+|.+|.|+++..+.+|++.++..+.+|++||+ +++.+.++..++.|.++|.
T Consensus         2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~   80 (202)
T 2zcw_A            2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR   80 (202)
T ss_dssp             ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred             CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence            4567889999999999999999  999999999999999999999999999999999999 8888999999999999999


Q ss_pred             EEEeeccchh
Q 010168          181 LLRIDKQSFT  190 (516)
Q Consensus       181 l~~l~~~~~~  190 (516)
                      ++.+ .+.|.
T Consensus        81 v~~i-~~~~~   89 (202)
T 2zcw_A           81 LEPL-PENPD   89 (202)
T ss_dssp             EEEC-CSSCC
T ss_pred             EEEE-hHhcC
Confidence            9999 88886

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.22  E-value=3.4e-11  Score=134.54  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=102.4

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhcce-eCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF-FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~-~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ......+.++|.|+.++...+..++..+.... +++|++|++|||.++.+|||++|.|.|++   +++ ..+..+++|++
T Consensus       333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~-~~v~~L~~Gd~  408 (999)
T 4f7z_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD  408 (999)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred             HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCC-cceEEecCCCc
Confidence            34567799999999999999999999888755 47899999999999999999999999986   222 35788999999


Q ss_pred             eeccccccCCCcceEEEEeee-eeEEEeeccchhhHHHhhh
Q 010168          158 FGEVSILCNIPQPYTVCICEL-SRLLRIDKQSFTNILEIYF  197 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~ll~~~~  197 (516)
                      ||+.+++.+.|+.+|++|.++ |+++++++++|..++....
T Consensus       409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e  449 (999)
T 4f7z_A          409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVE  449 (999)
T ss_dssp             ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred             ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence            999999999999999999885 9999999999999997654

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=96.56  E-value=0.00075  Score=60.97  Aligned_cols=52  Identities=13%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             CCCCCchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCHHHHH
Q 010168            8 GLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY   74 (516)
Q Consensus         8 ~~~~~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~~~~~   74 (516)
                      .....+.++|++++++|.+|++++|+++.-              .++|+|+ +++|+++.+|+....
T Consensus        36 ~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~--------------~~~y~~~-~iiDllailP~~~~~   87 (223)
T 1orq_C           36 EYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-TLYEIPALVPAGLLA   87 (223)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHTTSC--------------HHHHHHH-HHHHCTTHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHccccc--------------HHHHHHH-hHHHHHHHHHHHHHH
Confidence            335568899999999999999999998631              3799998 999999999998653

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=93.11  E-value=0.013  Score=59.58  Aligned_cols=49  Identities=20%  Similarity=0.420  Sum_probs=41.3

Q ss_pred             CCchhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhh-hhHHHhhccCCHHHH
Q 010168           11 ENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVI   73 (516)
Q Consensus        11 ~~~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~-~f~~d~~~~~P~~~~   73 (516)
                      ..|.++|+++.++|.+|++++|+++--              .++|+++ |+++|+++.+|+.+.
T Consensus       239 ~~l~~ie~i~~~iFtiE~ilR~~~~~~--------------k~~Y~ks~wniiDli~iip~~i~  288 (514)
T 2r9r_B          239 DPFFIVETLCIIWFSFEFLVRFFACPS--------------KAGFFTNIMNIIDIVAIIPYYVT  288 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSC--------------SSSSTTSHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCc--------------HHHHHhchhHHHHHHHHHHHHHH
Confidence            448899999999999999999997521              1479999 899999999998653

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=89.35  E-value=0.12  Score=42.01  Aligned_cols=45  Identities=16%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             chhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCHHH
Q 010168           13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDV   72 (516)
Q Consensus        13 ~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~~~   72 (516)
                      +.++|+++-++|.+|+++.+..+-          +    .++|++ |-++|+++.+|+..
T Consensus        39 l~~~d~~~~~iFt~E~~lRl~~~~----------~----~~~y~~-~niiDllailp~~~   83 (132)
T 1ors_C           39 LYLVDLILVIILWADYAYRAYKSG----------D----PAGYVK-KTLYEIPALVPAGL   83 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT----------S----TTTTTT-TCGGGTGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC----------C----HHHHHH-HHHHHHHHHHHHHH
Confidence            778999999999999999999641          1    257899 99999999999864

>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=85.39  E-value=0.58  Score=36.15  Aligned_cols=47  Identities=13%  Similarity=0.369  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHhhhcCCCC--CCcccccCCceEEEEeeeecCCeEEEeecC
Q 010168          468 HNIEELIKLAVDKLDFPD--GHSILSEDGGKILDVDMINDGQKLYLISET  515 (516)
Q Consensus       468 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~  515 (516)
                      .+++.+++...++++++.  -+++.+.+|.+|.+++-+.||+ .||+++.
T Consensus        40 ~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YVa~g~   88 (108)
T 2dnf_A           40 NQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYVAVGR   88 (108)
T ss_dssp             TCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEEEECS
T ss_pred             cCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEEEeCC
Confidence            779999999999999884  5789999999999988888888 8888874

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=81.98  E-value=0.47  Score=39.11  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=38.4

Q ss_pred             chhhHHHHHHHHHHHHhhhceeeEEeCCceEEeechhHHHHHHhhhhhHHHhhccCCHHHH
Q 010168           13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVI   73 (516)
Q Consensus        13 ~~~~~~~~d~~f~~di~~~f~t~~~~~~~~~~v~~~~~i~~~Y~~~~f~~d~~~~~P~~~~   73 (516)
                      +.++|.++-++|.+|+++.+..+-          +    .++|+++ -++|+++.+|+...
T Consensus        54 ~~~id~~~~~iF~~Ey~lRl~~a~----------~----k~~f~~~-~iiDllailP~~~~   99 (147)
T 2kyh_A           54 LYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLL   99 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT----------C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC----------c----HHHHHHH-HHHHHHHHHHHHHH
Confidence            778999999999999999999652          1    2578887 78999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	516
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	4e-14
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	7e-14
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-12
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	1e-11
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	1e-11
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	2e-10
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	9e-09
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	2e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	4e-08
d1o5la1	129	b.82.3.2 (A:1-129) CRP-like transcriptional regula	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d2zcwa2	112	b.82.3.2 (A:6-117) Transcriptional regulator TTHA1	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-33
 Identities = 54/254 (21%), Positives = 86/254 (33%), Gaps = 36/254 (14%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           A++ G L  +K L++ GA PN ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN--------------------------------- 328
            TPL  A + GH  +  LL++  A+ N                                 
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 329 -VDDAGSF-LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
            +   G   L  A   G     + +L     P++   +  TPLHVA       + KLLL 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 387 AGASVFTKDRWGNTPLDEGRMCGNK-NLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCT 445
            G S  +    G TPL              LL+             +   +         
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 246

Query: 446 VFPFHPWDEKVHRR 459
           V          +  
Sbjct: 247 VALLLSKQANGNLG 260

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-26
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 35/212 (16%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGR-------------------------------- 269
           A +H +L  +K L+  G  P+   ++G                                 
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 231

Query: 270 -SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 328
            +PLHLA   G+ ++   L+ K  + N+ +K G TPL    + GH  V  +L+K G  ++
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 329 V--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
                  + L  A   G+   +K +L +  D +++     +PLH AA +G   +  LLL+
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
            GAS       G TPL   +  G  ++  +L+
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 7e-24
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 2/177 (1%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA +G +   + L+   A PN    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A K     V   L++ G S N +     + L  A   G ++ +  +LS   + +
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 4e-23
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 35/187 (18%)

Query: 271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 330
           PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V   L++  A +N  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 331 DAGSF--LCTAVARGDSDFLKRVLSNGVDP------------------------------ 358
                  L  A   G ++ +K +L N  +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 359 ---SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
              +       TPLHVAA  G   +A+LLLE  A      + G TPL       N +++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 416 LLEDAEC 422
           LL     
Sbjct: 183 LLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 2e-20
 Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 8/247 (3%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 165

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A+   +  +  LL+  G S +      +  L  A  +   +  + +L  G   +
Sbjct: 166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L  
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 420 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVP------HNIEEL 473
                 +        +    H     +  F    +        + + P          ++
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 474 IKLAVDK 480
           + L +  
Sbjct: 346 VTLLLKN 352

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
           L  A   G    +K +L  G  P+  +    TPLH+AA  G   +AK LL+  A V  K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 396 RWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK 455
           +   TPL      G+ N++KLL +               +                  E 
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 456 V------HRRHGIVLWVPHNIEELIKLAVDK 480
                       + +   +    + +L +++
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLER 154

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 244 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 303
           ++G++  +K L++  AD N     G SPLH A  +G+ DI   L++ G   N     G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 304 PLLEAIKCGHDGVTSLL---VKEGASLNVDD 331
           PL  A + G+  VT +L     E + + V D
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
            A  G +     LI+ G   + T   G +PLH+A+  G   +  FL+Q   D+N K K G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
            +PL +A + GH  + +LL                               L NG  P+  
Sbjct: 331 YSPLHQAAQQGHTDIVTLL-------------------------------LKNGASPNEV 359

Query: 362 DYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNT 400
             D  TPL +A   G   +  +L    +  + V   D+   +
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 25/51 (49%)

Query: 367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           TPLHVA+  G   + K LL+ GAS    +    TPL      G+  + K L
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-25
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 37/217 (17%)

Query: 237 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYED------------- 282
           L V + AY G L +LK  I A  +   +TD D R+ LH A S G+ +             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 283 --------------------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
                               I   L+ KG  +N  ++ G TPL  A       +  +L++
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 323 EGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 380
            GA+ +  D    + +  A A+G+   +  +L      + +D +  TPLH+A  E     
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 381 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
           AKLL+  GAS++ +++   TPL   +  G   ++K +
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 4e-22
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
           L+  GA  N  + +G +PLH A S+   +I + L++ G + + KD +  T +  A   G+
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 314 DGVTSLLVKEGASLNVDDA--GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 371
             +  +L+   AS N+ D    + L  A      +  K ++S G      + + +TPL V
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 372 AASEGLYLMAKLLLE 386
           A   GL L+ K ++E
Sbjct: 209 AK-GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 2e-21
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 18/172 (10%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDY----------DGRSPLHLATSRGYEDITLFLIQK- 290
           AA +G +  LK L + GA+ N               G + L  A  +G+ ++   L+ + 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 291 GVDINIKDKFGNTPLLEAI----KCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGD 344
           G D+N  D  G   L+ A+        + +T LL+  GA +NV        L  AV +  
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231

Query: 345 SDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395
              ++R+L    ++ +  D D +T L +A    L  +A+LL + GAS    D
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 2e-19
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--- 298
           AA  G +  LK  +  GAD N+ D+ G +    A   G      FL ++G ++N++    
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 299 -------KFGNTPLLEAIKCGHDGVTSLLVKE-GASLN-VDDAGSFLCTAVARGDSDFL- 348
                  K G T L++A + GH  V  +L+ E GA +N  D+ G            D   
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 349 ----KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLD 403
                 +L +G D + R    +TPL +A  +    + + LLE     +   D  G T L 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 404 EGRMCGNKNLIKLL 417
                  K + +LL
Sbjct: 259 LAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 2e-16
 Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 51/227 (22%)

Query: 242 AAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A  + D+  ++ L+  GA+ N + +  G +PLH A     EDI   L++ G D  ++ K 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDP 358
           G TP L A   G   +  L + +GA +N  D    +    A   G    LK +   G + 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 359 SSRDYDH----------RTPLHVAASEGLYLMAKLLL----------------------- 385
           + R               T L  AA +G   + K+LL                       
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 386 ---------------EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
                          + GA V  +   G TPL       +  L++ L
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 1e-12
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGA 325
           +    L  A      D+   L++ G ++N ++ + G TPL  A++   + +  LL++ GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 326 SLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
              +           A   G    LK  LS G D +  D+   T    AA  G     K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 384 LLEAGASVFTKDRW----------GNTPLDEGRMCGNKNLIKLL 417
           L + GA+V  + +           G T L +    G+  ++K+L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (216), Expect = 9e-20
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 26/186 (13%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIK 297
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 298 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGAS-LNVDDAGSFLCTAVARGD 344
           D    T L              A K   D +   +VK+    +               G+
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 345 SDF-------LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 397
                     LK +++N ++  ++D +  T L++AA  G   +   LL+ GA  F  ++ 
Sbjct: 234 RKDSILENLDLKWIIANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 291

Query: 398 GNTPLD 403
           G  P+D
Sbjct: 292 GLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.0 bits (188), Expect = 4e-16
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 24/201 (11%)

Query: 241 SAAYHGDLYQLK-GLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
             ++   L ++         + N   D  G +PLH  TS    ++   L++ G +    D
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 299 KFGNTPLLEAI-------KCGHDGVTSLLVKEGASLN----------VDDAGSFLCTAVA 341
             G + L++A+           + +   L       +          +  +G   C+A A
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

Query: 342 RGDSDFLKRVL--SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL---EAGASVFTKDR 396
           +   D L   +         S   +  +  +    E    + + L         +  +D 
Sbjct: 198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257

Query: 397 WGNTPLDEGRMCGNKNLIKLL 417
            G+T L+     GN +++  L
Sbjct: 258 NGDTCLNIAARLGNISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 212 ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIR-AGADPNKTDYDGRS 270
           +  +     K +     G +E E      +      + +   L        N  D +G +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309
            L++A   G   I   L+  G D  I +K G  P+    
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 34/151 (22%)

Query: 226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL 285
            H     + +     +A Y+ D+     + +          +  S  +       + I  
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 286 FLIQK---GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
            L  K      +N +D  G+T L  A + G+  +   L                      
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL---------------------- 278

Query: 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
                    L  G DP   +     P+   A
Sbjct: 279 ---------LDYGADPFIANKSGLRPVDFGA 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.6 bits (203), Expect = 8e-18
 Identities = 41/264 (15%), Positives = 73/264 (27%), Gaps = 31/264 (11%)

Query: 181 LLRIDKQSFTNILEIYFCDGRKVLTNL-LEGKESNLRLKQLKSDITFHIGKHEAELALRV 239
           L+ +  +   +I      +  +V   L L     N   KQL SD   H    ++E+   V
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDA--HKKGIKSEVICFV 96

Query: 240 NSAAYHGDLYQLK---GLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
             AA  G    L     L+ +         +      LA   G+  +   L +      +
Sbjct: 97  --AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 297 KDK--FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-----FLCTAVARGDSDFLK 349
                        A + GH  V + L +   +       +     F   AV RG  + + 
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE----------------AGASVFT 393
            +L   V  +  +           +  +      L E                   S   
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
           +  +    L         + I+ L
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.4 bits (179), Expect = 7e-15
 Identities = 24/202 (11%), Positives = 49/202 (24%), Gaps = 19/202 (9%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLL 320
           N  +Y+    L L     +E++    I      +          +        + V  LL
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 321 VKEGASLNVDDA-------------GSFLCTAVARGDSDFLKRV---LSNGVDPSSRDYD 364
               A  N +                     A   G S  L  +   L++         +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDR--WGNTPLDEGRMCGNKNLIKLLEDAEC 422
           +     +AA  G   +   L E   +                    G+ +++  L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 423 TQLSEFHYCSQGMIDKMHPRKC 444
           T+ +           +      
Sbjct: 186 TEATAMIQAENYYAFRWAAVGR 207

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 4e-14
 Identities = 33/204 (16%), Positives = 52/204 (25%), Gaps = 28/204 (13%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDIN---I 296
           AA +G L+ L  L              +      LA   G+  +   L +         I
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV-------ARGDSDF 347
           + +        A+  GH  V + L+     L   +     +    V            + 
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 348 ---LKRVLSNGV------DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-----SVFT 393
               K    +GV          + +     L     E L    + LL            T
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
                N  L      GN+    LL
Sbjct: 313 IPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.7 bits (133), Expect = 4e-09
 Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 34/174 (19%)

Query: 243 AYHGDLYQLKGLIRAGADPN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
           A +G L+ L  L               +  +    A  RG+ ++  FL+   V +   + 
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 228

Query: 300 F----------------------GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 337
                                   +     +   G   +    V +   L        L 
Sbjct: 229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL----VTKSECLQGFYMLRNLI 284

Query: 338 TAVARGDSDFLKRVLSNGVDP-----SSRDYDHRTPLHVAASEGLYLMAKLLLE 386
                   D ++ +LS          ++   D    L +A   G      LLL 
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 15/114 (13%), Positives = 26/114 (22%), Gaps = 13/114 (11%)

Query: 213 SNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPL 272
                              E   A ++++     DL                 +     L
Sbjct: 232 EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL--------VTKSECLQGFYMLRNL 283

Query: 273 HLATSRGYEDITLFLIQKG-----VDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
                    D   FL+                  N  L  A++ G+ G  +LL+
Sbjct: 284 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 5/53 (9%)

Query: 242 AAYHGDLYQLKGLIRAGADP-----NKTDYDGRSPLHLATSRGYEDITLFLIQ 289
                 L  ++ L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.7 bits (195), Expect = 2e-17
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 53/232 (22%)

Query: 242 AAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
           A  H     L  L+   A     +  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT----------------AVAR 342
           + G+T L  A +        +L++   S   D + ++L                  +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 343 GDSDFLKRVLSNGVDPSSRDYD----------------------------------HRTP 368
            +++   R     +   + +YD                                   RTP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           LH+A       + +LLL+AGA    +   G TPL    +  N  L +LL   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 19/198 (9%)

Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVTS 318
                DG + LHLA    +E    FL+        +++++  G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 319 LLVKEGASLNVDDAGSFLCTAVA--RGDSDFLKRVLSNGVDPS--------------SRD 362
            L   GA + V + G      +A           +L                     + D
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422
             H      +             +    +  ++  G+TPL    +  +  +++LL DA  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 423 TQLSEFHYCSQGMIDKMH 440
                   C +  +    
Sbjct: 183 DLNKPEPTCGRTPLHLAV 200

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSP--------------LHLATSRGYEDITLFL 287
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 288 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG---SFLCTAVARGD 344
               + +  ++  G+TPL  A+      +  LL   GA LN  +     + L  AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389
           +  L+ +L  G DP++R Y  RTPL  A      ++A+LL   GA
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 20/65 (30%), Positives = 28/65 (43%)

Query: 266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
             GR+PLHLA       +   L++ G D   +   G TPL  A+   +  +  LL   GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 326 SLNVD 330
               D
Sbjct: 250 PEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 7/183 (3%)

Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-----SFLCTAVARGDSDFL 348
                + G+T L  A+   H+     L+   A     D       + L  A   G++  +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 408
           +++ + G      +    T LH+A     +  A +LL+   S             +    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 409 GNKNLIKLLEDAECTQLSEFHYCSQG--MIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWV 466
              +    ++     +  E          ++  +    T        +       +    
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 467 PHN 469
              
Sbjct: 182 ADL 184

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.0 bits (185), Expect = 2e-16
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 37/205 (18%)

Query: 251 LKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309
           +  L+  GA+ N   D  G + LHLA      D    L+  G D N +D  G TPL  A+
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 310 KCGHDGVTSL----------------------------------LVKEGASLNVDDAG-- 333
                GV  +                                  L+   A +N  D    
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
           + L  A A  +++ +  +L +  +  ++D    TPL +AA EG Y  +K LL+  A+   
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 394 KDRWGNTPLDEGRMCGNKNLIKLLE 418
            D     P D      + ++++LL+
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 16/77 (20%), Positives = 28/77 (36%)

Query: 244 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 303
              +   +  L+   A+ +  D    +PL LA   G  + +  L+    +  I D     
Sbjct: 132 AVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRL 191

Query: 304 PLLEAIKCGHDGVTSLL 320
           P   A +  H  +  LL
Sbjct: 192 PRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 380 MAKLLLEAGASV-FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDK 438
           +   LL  GA +  T D+ G T L         +  K L DA     S+ +     +   
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 439 MHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 469
           +      VF     +   +    +       
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPL 94

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 348 LKRVLSNGVDPSSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 406
           +  +L+ G + ++  D    T LH+AA       AK LL+AGA   ++D  G TPL    
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 407 MCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD 453
                 + ++L     T L+   +     +                 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 111

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.8 bits (170), Expect = 5e-15
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G  +     +  
Sbjct: 18  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 77

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
                +      SFGE++++ N P+  T+       L  +D+ +F  I+ 
Sbjct: 78  GRCVGNY-DNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIV 126

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 6e-15
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
           G++ +K D DG++P+ LA   G  ++ ++LIQ+G  +   D   +T    A    H  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 318 SLLVK 322
            +  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.1 bits (162), Expect = 6e-13
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
            G +   +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N+
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 414 IKLLE 418
           + + +
Sbjct: 270 VDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 26/204 (12%)

Query: 270 SPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 328
           SP+ L T + G   IT  + ++ V+I    +   T L           +  L+   A   
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
                               K  ++ G D ++ D D  TPL +A       +   L++AG
Sbjct: 58  --------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 97

Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMH-PRKCTVF 447
           A     ++   + L +     +  ++  + ++   +         GM   M         
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 157

Query: 448 PFHPWDEKVHRRHGIVLWVPHNIE 471
                   V +   +        +
Sbjct: 158 QVASAKLLVEKGAKVDYDGAARKD 181

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 32/134 (23%)

Query: 255 IRAGADPNKTDYDGRSPLHLATSRGYED-ITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
               A  +   Y GR+ LH A        +   + +KG + + +D+ G TP++ A + G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 373
             V   L                               +  G    + D    T   +A 
Sbjct: 234 IEVVMYL-------------------------------IQQGASVEAVDATDHTARQLAQ 262

Query: 374 SEGLYLMAKLLLEA 387
           +   + +  +    
Sbjct: 263 ANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 38/234 (16%), Positives = 61/234 (26%), Gaps = 59/234 (25%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVD 293
               G     + + R   +        R+ LH   S    + +  L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 294 INIKDKFGNTPLLEAI---------------------------------KCGHDGVTSLL 320
           +N  D   NTPL+ A+                                      G+   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 321 VKEG----------------ASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 364
           +                     +   + G     +         K          S  Y 
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 365 HRTPLHVAASEGLYLMAK-LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
            RT LH AA      + K L+ E G++   +D  G TP+      G   ++  L
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ 289
           AA  G +  +  LI+ GA     D    +   LA +  + +I     +
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 44/218 (20%)

Query: 242 AAYHGDLYQLKGLI----RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           A   G+L  +  L+    + G + +  +   ++PLHLA       +   L+  G      
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA-------------------------------- 325
           D+ G T    A +         L+   A                                
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 326 --------SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 377
                   ++++    S L  AV       ++ +L +G + +++ Y   + LH A+  GL
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
             + + L+ +GA    K+   +TPL   R     ++++
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 267 DGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGH 313
           DG +PLH+A  +G       L+    Q G +++I +    TPL  A+    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 364 DHRTPLHVAASEGLYLMAKLLL----EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           D  TPLH+A  +G       L+    + G  +   +    TPL    +    ++++LL  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 420 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLW 465
           A  + ++   +           R  T                    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 27/177 (15%)

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G+TPL  A+  G+      L                           +      G +   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL---------------------------VNLFQQGGRELDI 35

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
            +   +TPLH+A    L  + +LL+ AGAS    DR G T         +   ++ L D+
Sbjct: 36  YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

Query: 421 ECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA 477
                 +    +   +  +H    T                  + +      LI   
Sbjct: 96  AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 152

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (163), Expect = 4e-14
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G      +    
Sbjct: 22  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG-----EMDVYV 76

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
           + E  + +    SFGE++++   P+  TV      +L  ID+ S+  IL
Sbjct: 77  NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 125

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
           ++ KVS+ +         +   +    F  G+ I+ QG   D+ + +  G    +    +
Sbjct: 3   FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE 62

Query: 144 GSEETVSQ-LQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK 202
             E      L P+  FGE+++L N P+  TV      + +++D+  F  +L       ++
Sbjct: 63  NEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 122

Query: 203 VLTNL 207
            +   
Sbjct: 123 NIQQY 127

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 84  YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
           +IE +   K        ++V  +  + +  GE I+ QG+  D  + V  G +      + 
Sbjct: 3   FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKG 62

Query: 144 G------SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYF 197
                      +++      FGE++++ N P+  +       + L +D Q+F  +L    
Sbjct: 63  KSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCM 122

Query: 198 CDGRKVLTNLLEGKESNLRLKQL 220
              ++ +    E      +L  L
Sbjct: 123 EIMKRNIATYEE------QLVAL 139

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 46/207 (22%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGH--------- 313
           DG S LHLA     + +T+ +I+        +N ++    TPL  A+             
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 314 --------------------------------DGVTSLLVKEGASLNVDDAGSFLCTAVA 341
                                              T+  +         +  + L  A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 342 RGDSDFLKRVLSNGVDP-SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
            G    ++ ++S G D  +    + RT LH+A       +  LLL+ GA V      G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 401 PLDEGRMCGNKNLIKLLEDAECTQLSE 427
           P        +  + + L       L  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 2e-09
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 46/195 (23%)

Query: 242 AAYHGD----LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297
           A  H +    +  ++ +    A  N  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 298 DKFG---------------------------------------NTPLLEAIKCGHDGVTS 318
           D  G                                       +T L  A   G+ G+  
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 319 LLVKEGAS---LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 375
           LLV  GA        +  + L  AV   + D +  +L  G D +   Y   +P  +    
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 376 GLYLMAKLLLEAGAS 390
               + + L +    
Sbjct: 189 PSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 4/118 (3%)

Query: 364 DHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           D  + LH+A           + + +    A +  ++    TPL    +     + + L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 420 AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA 477
           A C         +  +                        H I+    +N    + LA
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 118

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 8e-07
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 244 YHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
              +   +  L++ GAD N+  Y G SP  L   R    I   L Q  ++      
Sbjct: 154 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 28/169 (16%)

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
           G++ L  AI      +T  +++                           +V  +    + 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR---------------------------QVKGDLAFLNF 34

Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
           ++   +TPLH+A       +A+ LL AG     +D  GNTPL      G    + +L  +
Sbjct: 35  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 94

Query: 421 ECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 469
             T             +            +    ++    G  +     
Sbjct: 95  CTTP-HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 142

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 31/159 (19%)

Query: 226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITL 285
             + +   ++                + L     +  +    G + LH+A ++GY ++  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
            LIQ   D+NIKD  G TPL  A   G +    +L                         
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------------------------- 251

Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
                 + N  D  + +   +T   VA  + L  + +L 
Sbjct: 252 ------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
            N+   D  +           D   +L    ++     K G T L  A   G+  V  LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 321 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 380
           ++    +N+                               +DYD  TPLH AA  G    
Sbjct: 219 IQARYDVNI-------------------------------KDYDGWTPLHAAAHWGKEEA 247

Query: 381 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
            ++L+E    +   ++ G T  D      +++++  LE+ +
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFD----VADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.0 bits (154), Expect = 7e-12
 Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 29/211 (13%)

Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           +A   GD  ++  L+  GAD N  + DG + LH A      D+  FL++ G +IN  D  
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------------------- 331
           G  PL  A  CG+  +   L+ +GA +   +                             
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
             +           D  + + S  ++         T LHVAA++G   + KLL++A   V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422
             KD  G TPL      G +   ++L +  C
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 316
           K  +D  +    A S G  +  L L+++G DIN  +  G T L +A    +  +
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 15/91 (16%), Positives = 28/91 (30%)

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
            +D       A S G       LLE GA +   +  G T L +  +  N +++K L +  
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 422 CTQLSEFHYCSQGMIDKMHPRKCTVFPFHPW 452
                  +     +          +  +   
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 6/164 (3%)

Query: 306 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDH 365
           L+        +   +VK   +    D G+    A + GD++ + R+L  G D +  + D 
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425
            T LH A  +    M K L+E GA++   D  G  PL     CG  ++ + L        
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA--- 130

Query: 426 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 469
              H  +                     +    R G+ +     
Sbjct: 131 ---HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
           AA+ G     + L+    D    +  G++   +A     EDI  +L +     N+
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 5/175 (2%)

Query: 297 KDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLS 353
           K KF      L A   G       L++ GA +N  +    + L  A    + D +K ++ 
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
           NG + +  D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD       + L
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 414 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPH 468
           ++   + +   +       +     +   +  +   H  D +  +  G  L V  
Sbjct: 155 LQNEVNRQGVDI--EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 8e-12
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 14/142 (9%)

Query: 267 DGRSPLHL---ATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDG-- 315
           D  + LH    A         L     GVD+  K       +   T L  A++       
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 316 -VTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372
            +   LV+   +L+       + L       +++ LK +L         +    TPL +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 373 ASEGLYLMAKLLLEAGASVFTK 394
                    +LL +A +  F  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNS 143

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 144
           +  V LF+      + +IV  +       G VI   G   D+++FV  G           
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG-------SVSV 65

Query: 145 SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
           +     +L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 205 TNLLE 209
              LE
Sbjct: 126 KTALE 130

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 90  LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETV 149
           ++   + E    +   +          +  +G++ + L+++  G ++ +  G  G     
Sbjct: 8   VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67

Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
             ++P   FG            T    E S++L I  ++   +L+      R  L  L +
Sbjct: 68  RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127

Query: 210 G-KESNLRLKQL 220
               +  R   L
Sbjct: 128 ELGYAERRTVTL 139

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 85  IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCH-GVLEEVGVGED 143
           + +V LF+      ++ I  R+    F     ++ +G+ V+++ F+    +      G  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQP---------YTVCICELSRLLRIDKQSFTNILE 194
                 S L+     G+  +   +             TV          +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 195 IY 196
            +
Sbjct: 128 QF 129

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 7e-11
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 21/209 (10%)

Query: 271 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  ++N+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 330 DDAGSFLCTAV-------ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 382
           DD                   +            D +       T LH+A  +  + +++
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 383 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPR 442
            L+E GASV  KD++   PL      G+  LI                C  G        
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLI-------------ELLCGLGKSAVNWQD 169

Query: 443 KCTVFPFHPWDEKVHRRHGIVLWVPHNIE 471
           K    P      + H    ++L   +  E
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 7e-10
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 242 AAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
           A    + ++++ L+ +  +   + D DGR PLH + S    +IT FL+ K  ++N+ D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-------SFLCTAVARGDSDFLKRVLS 353
            ++           G   ++          D         + L  AV +   +  + ++ 
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKN 412
           NG     +D  ++ PLH AAS G   + +LL   G ++V  +D+ G TPL      G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 413 LIKLL 417
              LL
Sbjct: 187 AAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 33/137 (24%), Positives = 41/137 (29%), Gaps = 34/137 (24%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCG 312
           LI  GA     D   + PLH A S G   +   L   G   +N +DK G TPL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372
           H     LLV                                 G +    D        VA
Sbjct: 184 HGDAAVLLV------------------------------EKYGAEYDLVDNKGAKAEDVA 213

Query: 373 ASEGLYLMAKLLLEAGA 389
            +E    + K  L    
Sbjct: 214 LNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 1/105 (0%)

Query: 367 TPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425
            PLH A  E  +   + LL +  + +  KD+ G  PL          +   L        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 426 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
            + +    G                        +  +       +
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
           + + GA+ +  D  G     +A +   E +  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 30/159 (18%)

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
           N PL +A           L+                               S       +
Sbjct: 1   NYPLHQACMENEFFKVQELLH------------------------------SKPSLLLQK 30

Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421
           D D R PLH + S   + +   LL    +V   D   ++      +  +   +++++   
Sbjct: 31  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 90

Query: 422 CTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRH 460
              L                       F      +    
Sbjct: 91  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 129

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTA 339
           + +++ FLI+ G  + IKDKF   PL  A   G   +  LL   G S             
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW--------- 167

Query: 340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWG 398
                                +D    TPL  A +EG    A LL+E  GA     D  G
Sbjct: 168 ---------------------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 399 NTPLDEGRMCGNKNLIKLL 417
               D   +  N+ + K  
Sbjct: 207 AKAED---VALNEQVKKFF 222

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 80  LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG 139
           +    ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L+   
Sbjct: 21  IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKV 80

Query: 140 V--GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
                     T+  L   ++FGE  IL N P+  T+   E S LLRI+++ F  + E Y
Sbjct: 81  SETSSHQDAVTICTLGIGTAFGES-ILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 138

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 95  SSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 154
           +   +   +   H   +     ++ QG   + LY++  G +  +   E+G E  +S L  
Sbjct: 2   TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61

Query: 155 NSSFGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG-KE 212
               GE+ +     +    V       +  I  + F  ++++      ++   +    + 
Sbjct: 62  GDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV 121

Query: 213 SNLRLKQL 220
           ++ ++  L
Sbjct: 122 TSEKVGNL 129

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 7e-10
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK--EG 324
           D    L  A   G +D    L+  G      D  G +PL  A + GH   T +L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 325 ASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
                    + L  A + G ++ ++ +L +G D +++D    T LH A       + +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 385 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
           ++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  G   +++ L+  GA        G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPS 359
            TPL  A   GH  +  +L+K GA +N  D    + L  A      + ++ ++  G D  
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLL 384
           ++    +T   ++   G   +A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423
           D    L  AA  G     ++L+  GA   T D  G +PL      G+ +  ++L  A  +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 424 QLSEFHYCSQGMIDKMHPRKCTVFPFHPW 452
           + +        +          +      
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLK 88

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 11/156 (7%)

Query: 64  LLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNV 123
           +L  L   +  +I        +  + LF      F+  ++ ++  E F PG+ I+ +G +
Sbjct: 49  ILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTI 108

Query: 124 VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183
             ++YF+ HGV+  +  G    +         S FGE+ +L    +  +V      RL  
Sbjct: 109 GKKMYFIQHGVVSVLTKGNKEMKL-----SDGSYFGEICLLTRGRRTASVRADTYCRLYS 163

Query: 184 IDKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQ 219
           +   +F  +LE Y    R   T  ++      RL +
Sbjct: 164 LSVDNFNEVLEEYPMMRRAFETVAID------RLDR 193

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 4e-09
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           + L  A +RG  +    L+Q  V++N ++ FG T L        +    LL++       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 330 DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG-LYLMAKLLLEA 387
           D  G + +  A   G  D L+ +L    D +  D +   PLH+AA EG L ++  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 388 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
            ++V  ++  G+T  D  R+ G   ++ L++  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 6e-08
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 4/150 (2%)

Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
           AA  GDL QL  L++   + N  +  GR+ L +      E     L+ +G + ++KD+ G
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIAR-RLLLRGANPDLKDRTG 66

Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD---SDFLKRVLSNGVDP 358
              + +A + G       L++  A +N++D    L   +A  +         V     + 
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
             R++   T   +A   G   +  L+   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 31/103 (30%)

Query: 367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 426
             L  AA+ G       LL+   +V  ++ +G T L   ++   +   +LL       L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 427 EFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHN 469
           +    +            T+     +   V+          H 
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 105

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (123), Expect = 9e-09
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 85  IEKVSLFKGCSSEFINQIVIR-VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 143
           +  +      S+    ++    + E     G V+  QG      Y +  G +        
Sbjct: 12  LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNV----VI 67

Query: 144 GSEETVSQLQPNSSFGEVSILCNIPQPYT-VCICELSRLLRIDKQSFTNILEIY 196
             +  V  L     FG+++++ + P+  + V   +    LR+DK+ F  IL   
Sbjct: 68  YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDV 121

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 78  QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF--FLPGEVIMEQGNVVDQLYFVCHGVL 135
           +T++   + ++ LF+G   E    I+ +V   F     GE I++ GN   QL F+  G +
Sbjct: 2   ETMF-DTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60

Query: 136 EEVGVGEDGSEETVSQLQPNSSFGEVSILCN-IPQPYTVCICELSRLLRIDKQSFTNILE 194
             V   ++     + Q++        S+         +         + I K    + L 
Sbjct: 61  SIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLF 120

Query: 195 IY 196
            Y
Sbjct: 121 RY 122

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 271 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLN 328
            L  A +RG  +++   L ++ V  +  ++FG T L   +         LL +    ++ 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
                S +  A   G  D LK ++ +G D +  D     P+H+A  EG   +   L  A 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAE 123

Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
           + +  +D  G TPL+     G ++L+ +L+ 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 241 SAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 299
            AA  GD+ +++ L+ R    P+  +  G++ L +            L Q          
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359
             +     A     D +  L+         D  G+       +     +   L+   D  
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLE 386
            RD    TPL +A   G   +  +L  
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 1/105 (0%)

Query: 367 TPLHVAASEG-LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425
             L  AA+ G +  + +LL          +R+G T L           ++LL+      +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 426 SEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNI 470
            +    S            T+         V+   G      H  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 97  EFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS 156
           + +++++   H   +     I+  G+  + L+F+  G +  +   +DG E  +  L    
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 157 SFGEVSIL----CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG-K 211
            FGE+ +         +   V       +  I    F  + +        + + + +  +
Sbjct: 63  FFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLR 122

Query: 212 ESNLRLKQL 220
           ++  ++  L
Sbjct: 123 KTTRKVGDL 131

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 99  INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158
           + +++       F  GE++  Q + ++ +  +  G L+   V E+G    + +++P    
Sbjct: 3   LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62

Query: 159 GEVSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
               I  + P  P  V   E S++L I K+ F ++L          L ++ E
Sbjct: 63  ASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 114

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
           + L  ++  G  D+   +I +  D ++ +  G T L  A+  GH  +   LV+ G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 330 DDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHR---TPLHVAASEGLYLMAKLL 384
            D+  +     A   ++    K ++ +G    +  Y              EG    ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 385 LEAGA 389
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 303 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
             LL++   G   +   ++ E    ++ +         A                 +   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 363 YDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLD--EGRMCGNKNLIKLL 417
            D    TPLH AAS     + K L+E+GA+VF        T  D  E    G     + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 418 EDAE 421
              +
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 9/53 (16%)

Query: 252 KGLIRAGADPN-KTDYDGRSPLHL--ATSRGYEDITLFLIQKGVDINIKDKFG 301
           K L+ +GA     T  D ++          GY   + FL        +++K G
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL------YGVQEKMG 130

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-05
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 330
            L  A +RG  +    L++ G + N  + +G  P+   +         LL+        D
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 331 DAGSFLCTAVARGDSDFLKR--VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA 387
            A        A  +        +   G     RD   R P+ +A   G   +A+ L  A
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	516
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.79
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.78
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.78
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.77
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.76
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.76
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.73
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.73
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.72
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.71
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.7
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.66
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.66
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.62
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.59
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.58
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.55
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	94.0
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	86.22

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-37  Score=288.84  Aligned_cols=193  Identities=24%  Similarity=0.235  Sum_probs=177.3

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~  307 (516)
                      -+.+|.||||+||..|+.+++++|++.|++   ++.+|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            356789999999999999999999999988   56788999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCC-------------------------------------------------cCCcchHHHH
Q 010168          308 AIKCGHDGVTSLLVKEGASLN-------------------------------------------------VDDAGSFLCT  338 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~-------------------------------------------------~~~~~~~l~~  338 (516)
                      |+..++.+++++|++.+....                                                 ...+.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            999999999999987543211                                                 0235689999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          339 AVARGDSDFLKRVLSNGVDPSSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       339 A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      |+..++.+++++|++++++.+.. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999988764 67899999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccC
Q 010168          418 EDAECT  423 (516)
Q Consensus       418 ~~~~~~  423 (516)
                      +++||+
T Consensus       245 l~~Ga~  250 (255)
T d1oy3d_         245 RAHGAP  250 (255)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            999995

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=272.94  Aligned_cols=193  Identities=26%  Similarity=0.378  Sum_probs=183.6

Q ss_pred             cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       226 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      ...+..+..|.||||+||..|+.+++++|++.+.+....+..+.++++.|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL  107 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL  107 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchh
Confidence            33467788899999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL  383 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  383 (516)
                      |+|+..|+.+++++|+++|++++..+  +.+|||+|+..++.+++++|.+.+.+++.+|..|+||||+|+..|+.++|++
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHH
Confidence            99999999999999999999988755  5699999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       384 Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      |+++|++++.+|.+|+||||+| ..|+.+++++|++
T Consensus       188 LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         188 LVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999999998 4799999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=264.92  Aligned_cols=207  Identities=31%  Similarity=0.356  Sum_probs=190.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCCh
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  314 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~  314 (516)
                      .+.|+.+|..|+.+.|+.++.. +.+++.+|.+|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            4678999999999999877654 678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCC
Q 010168          315 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  392 (516)
Q Consensus       315 ~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  392 (516)
                      +++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|.+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            99999999999988755  6799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          393 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       393 ~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      .+|..|+||||+|+..|+.+++++|++.|++..              .++..+.+|+|.| .+++
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~--------------~~d~~g~tpl~~A-~~~~  213 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIY--------------IENKEEKTPLQVA-KGGL  213 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCTTSCCHHHHC-CTTH
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHH-HCCC
Confidence            999999999999999999999999999999643              3445566899987 4555

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=262.74  Aligned_cols=193  Identities=22%  Similarity=0.215  Sum_probs=173.3

Q ss_pred             hhHHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          234 ELALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      +|.||||+|+..|+.    ++++.+...|+++|.+|.+|+||||+||..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            378999999999996    4556666789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCc--------CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhChHHH
Q 010168          310 KCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYLM  380 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~  380 (516)
                      ..|+.++++.|++.+.....        ..+.+|||.|+..++.+++++|+..|+.++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            99999999999998766543        235699999999999999999999999988765 679999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccc
Q 010168          381 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS  426 (516)
Q Consensus       381 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~  426 (516)
                      +++|+++|+|++.+|..|+||||+|+..++.+++++|++.+.+...
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence            9999999999999999999999999999999999999998776443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-33  Score=266.73  Aligned_cols=186  Identities=23%  Similarity=0.294  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHhcCCHHHHHHH--------HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHH
Q 010168          234 ELALRVNSAAYHGDLYQLKGL--------IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  305 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL  305 (516)
                      .|.||||+||..|+.++++.|        ++.|+|+|.+|.+|+||||+|+..|+.++|++|+++|++++.+|..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            588999999999999988776        467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCC---CC----------------------------------------------CcCCcchHH
Q 010168          306 LEAIKCGHDGVTSLLVKEGA---SL----------------------------------------------NVDDAGSFL  336 (516)
Q Consensus       306 ~~A~~~~~~~~v~~Ll~~g~---~~----------------------------------------------~~~~~~~~l  336 (516)
                      ++|+..++.++++++...+.   .+                                              ....+.|+|
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999998888865421   00                                              002356789


Q ss_pred             HHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          337 CTAVARGDSDFLKRVL-SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       337 ~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                      |+++..++.++++.++ ..+.+.+.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999998755 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 010168          416 LLED  419 (516)
Q Consensus       416 ~L~~  419 (516)
                      +|++
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3e-32  Score=260.12  Aligned_cols=208  Identities=27%  Similarity=0.352  Sum_probs=186.9

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcC
Q 010168          233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       233 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~  312 (516)
                      ..+.|+|+.||..|+.++|++|+++|+++|.+|.+|+||||+|+.+|+.++|++|+++|++++..+..+.|||++|+..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCCCCcC--CcchHHHHHHHcCCHHHHHHHHHC---------------------------CCCCCCCCC
Q 010168          313 HDGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSN---------------------------GVDPSSRDY  363 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~---------------------------g~~~~~~~~  363 (516)
                      +.++++.|+++|+..+..  ++.+++++|+..+..++++.++..                           ..+....+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            999999999999888765  456899999988888888887742                           223455678


Q ss_pred             CCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcc
Q 010168          364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRK  443 (516)
Q Consensus       364 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (516)
                      .|.||||.|+..|+.++++.|+++|++++.++..|+||||+|+..|+.++|++|+++|++...              .+.
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~--------------~d~  263 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA--------------VNK  263 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------CCT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--------------cCC
Confidence            899999999999999999999999999999999999999999999999999999999996532              233


Q ss_pred             eeecCCCCCCc
Q 010168          444 CTVFPFHPWDE  454 (516)
Q Consensus       444 ~~~~~~~~~~~  454 (516)
                      .+.+|+|.|+.
T Consensus       264 ~G~TaL~~A~e  274 (291)
T d1s70b_         264 VGQTAFDVADE  274 (291)
T ss_dssp             TSCCTTTSCCS
T ss_pred             CCCCHHHHHHH
Confidence            45589999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-32  Score=247.76  Aligned_cols=203  Identities=24%  Similarity=0.246  Sum_probs=182.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---CCCCCCChHHHHHHHcC
Q 010168          237 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN---IKDKFGNTPLLEAIKCG  312 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~d~~g~tpL~~A~~~~  312 (516)
                      +|||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++   ..+..|.||+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            799999999999999999885 57889999999999999999999999999999999987   45778999999999999


Q ss_pred             ChHHHHHHHHcCCCCCcC----CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          313 HDGVTSLLVKEGASLNVD----DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       313 ~~~~v~~Ll~~g~~~~~~----~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      ..++++.++..+...+..    .+.++++.++..++.++++.|+..|.+.+.++..|+||||+|+..|+.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            999999999998766543    3568999999999999999999999999999999999999999999999999999987


Q ss_pred             -CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cccCccccccccCccccccCCCcceeecCCCCCC
Q 010168          389 -ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD  453 (516)
Q Consensus       389 -~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (516)
                       .+++.+|..|+||||+|+.+|+.+++++|++ .|++...              ....+.+|+|.|.
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~--------------~d~~g~t~l~~A~  214 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------------VDNKGAKAEDVAL  214 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--------------CCTTSCCTGGGCS
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC--------------cCCCCCCHHHHHh
Confidence             6789999999999999999999999999996 5885433              2344568888875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=268.58  Aligned_cols=237  Identities=21%  Similarity=0.218  Sum_probs=189.4

Q ss_pred             hhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 010168          205 TNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT  284 (516)
Q Consensus       205 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v  284 (516)
                      +.++..+.......++....  .++..+..|.||||+||..|+.+++++|+++|++++.++.+|+||||+|+..|+.+++
T Consensus         5 ~~Aa~~g~~~~v~~Ll~~g~--~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~   82 (408)
T d1n11a_           5 HVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV   82 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHCcCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            33344444444444444332  2345567789999999999999999999999999999999999999999888766554


Q ss_pred             H------------------------------------------------------------------HHHHcCCCCcCCC
Q 010168          285 L------------------------------------------------------------------FLIQKGVDINIKD  298 (516)
Q Consensus       285 ~------------------------------------------------------------------~Ll~~g~~~~~~d  298 (516)
                      +                                                                  +|+++|++++..+
T Consensus        83 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~  162 (408)
T d1n11a_          83 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG  162 (408)
T ss_dssp             HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence            4                                                                  5556677777888


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHcCCCCCcC------------------------------------------------
Q 010168          299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------------------------------------------  330 (516)
Q Consensus       299 ~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~------------------------------------------------  330 (516)
                      ..|.+|||+|+..|+.+++++|+++|++++..                                                
T Consensus       163 ~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  242 (408)
T d1n11a_         163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG  242 (408)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhC
Confidence            88999999999999999999999988876521                                                


Q ss_pred             --------------------CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCC
Q 010168          331 --------------------DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  390 (516)
Q Consensus       331 --------------------~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  390 (516)
                                          .+.+|++.|+..++.+++++|+++|++++..+..+.||||.|+..++.++++++++.|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~  322 (408)
T d1n11a_         243 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD  322 (408)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             cHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccc
Confidence                                122456667777777888888888888888888888888888888888888888889999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       391 ~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      ++.+|.+|+||||+|++.|+.++|++|+++|+++.              ..+..+.+|+|.|...++
T Consensus       323 in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n--------------~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--------------EVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCSSSCCHHHHHHHTTC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999643              334456789999988888

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=248.42  Aligned_cols=194  Identities=27%  Similarity=0.293  Sum_probs=159.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC----------------
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINI----------------  296 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~----------------  296 (516)
                      ++.|+||.|+..|+.++|++|+++|+++|.++ ..|+||||+|+..|+.+++++|++.+.+++.                
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            46788999999999999999999999988765 4688999999999999999988887654211                


Q ss_pred             ------------------------------------------------------------CCCCCChHHHHHHHcCChHH
Q 010168          297 ------------------------------------------------------------KDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       297 ------------------------------------------------------------~d~~g~tpL~~A~~~~~~~~  316 (516)
                                                                                  .+..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                        12347788888888888888


Q ss_pred             HHHHHHc-CCCCCcCC--cchHHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH-cC
Q 010168          317 TSLLVKE-GASLNVDD--AGSFLCTAVA----RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AG  388 (516)
Q Consensus       317 v~~Ll~~-g~~~~~~~--~~~~l~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g  388 (516)
                      +++|+++ |++++..+  +.++.+.+..    .+..+++++|+++|++++.++..|.||||+|+..|+.++|++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            8888864 77777654  3344333322    233468889999999999999999999999999999999999998 58


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCcccc
Q 010168          389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE  427 (516)
Q Consensus       389 ~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~  427 (516)
                      ++++.+|.+|.||||+|+..|+.+++++|+++||++..+
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999999999999999999999999987543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-30  Score=239.38  Aligned_cols=216  Identities=22%  Similarity=0.167  Sum_probs=184.9

Q ss_pred             hhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCC
Q 010168          204 LTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPN---KTDYDGRSPLHLATSRGY  280 (516)
Q Consensus       204 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~Lh~A~~~g~  280 (516)
                      ++.++..+.......++... .......+..|.||||+|+..|+.+++++|+++|++++   ..+..|.||+|+|+..+.
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~   82 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN   82 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccc
Confidence            34444444433333333322 22345667889999999999999999999999999986   456789999999999999


Q ss_pred             HHHHHHHHHcCCCC--cCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCC-
Q 010168          281 EDITLFLIQKGVDI--NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-  355 (516)
Q Consensus       281 ~~~v~~Ll~~g~~~--~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g-  355 (516)
                      .++++.++..+.+.  ...+..+.||++.++..++.+++++|++.|.+.+..+  ++||||+|+..|+.++++.|++.+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_          83 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             HHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccc
Confidence            99999999988754  4567889999999999999999999999998887654  679999999999999999999987 


Q ss_pred             CCCCCCCCCCCcHHHHHHHhChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccC
Q 010168          356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT  423 (516)
Q Consensus       356 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~  423 (516)
                      .+++.+|.+|+||||+|+..|+.++|++|++ .|++++.+|.+|+||||+|+   +.+++++|+++|+|
T Consensus       163 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            6789999999999999999999999999997 59999999999999999998   46899999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.8e-31  Score=245.16  Aligned_cols=193  Identities=25%  Similarity=0.247  Sum_probs=167.1

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccc-cccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDIT-FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT  276 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~  276 (516)
                      +.|.+.++.++..+.......++..... ..+...+..|.||||+||..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhh
Confidence            4566777777776666655555443322 234566778899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCC-----------------------------------------------CcCCCCCCChHHHHHH
Q 010168          277 SRGYEDITLFLIQKGVD-----------------------------------------------INIKDKFGNTPLLEAI  309 (516)
Q Consensus       277 ~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~g~tpL~~A~  309 (516)
                      ..++.+++++|++.+..                                               ++.+|..|.||||+|+
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~  166 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccc
Confidence            99999999999764321                                               3456788999999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcC---CcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          310 KCGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      ..|+.+++++|++++++.+..   .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       167 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             cccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999988753   46799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 010168          387 AGAS  390 (516)
Q Consensus       387 ~g~~  390 (516)
                      +||+
T Consensus       247 ~Ga~  250 (255)
T d1oy3d_         247 HGAP  250 (255)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-31  Score=239.89  Aligned_cols=182  Identities=21%  Similarity=0.293  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHH
Q 010168          234 ELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  309 (516)
Q Consensus       234 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~  309 (516)
                      +|.||||+||..|+.++++.|++    .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999998874    79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCCC----------------------------------------cCCcchHHHHHHHcCCHHHHH
Q 010168          310 KCGHDGVTSLLVKEGASLN----------------------------------------VDDAGSFLCTAVARGDSDFLK  349 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~----------------------------------------~~~~~~~l~~A~~~~~~~~v~  349 (516)
                      ..++.++++.+........                                        ...+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999988887766432111                                        012346788888888888888


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 010168          350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  415 (516)
Q Consensus       350 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~  415 (516)
                      .++++|.+.+.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+.+|+.++||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            888888888888888888888888888888888888888888888888888888888888877764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=216.78  Aligned_cols=153  Identities=27%  Similarity=0.408  Sum_probs=121.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      +|||.||..|+.++|+.|+++|+++|.+|.+|+||||+|+ .|+.+++++|+++|++++..+..|.+||+.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6788888888888888888888888888888888888765 677888888888888888888888888887777777777


Q ss_pred             HHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCC-CCCCCC
Q 010168          317 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKD  395 (516)
Q Consensus       317 v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~  395 (516)
                      ++.|++.+.                               +++..+..|.+|||+|+..|+.+++++|+++|+ +++.+|
T Consensus        82 ~~~l~~~~~-------------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          82 LQTLLEFQA-------------------------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             HHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ccccccccc-------------------------------cccccccccccccccccccccccccccccccccccccccC
Confidence            666666554                               455667778888888888888888888888775 778888


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010168          396 RWGNTPLDEGRMCGNKNLIKLLEDAE  421 (516)
Q Consensus       396 ~~g~tpl~~A~~~~~~~~v~~L~~~~  421 (516)
                      ..|+||||+|+..|+.+++++|+++|
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88888888888888888888888776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.8e-30  Score=244.65  Aligned_cols=213  Identities=26%  Similarity=0.370  Sum_probs=182.5

Q ss_pred             hhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 010168          204 LTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDI  283 (516)
Q Consensus       204 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~  283 (516)
                      +..+...+.......++....  +.+..+..|.||||+|+..|+.+++++|+++|++.+..+..+.|||++|+..++.++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Ga--dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~  121 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC--CCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccch
Confidence            333334444444444443332  335567778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHc-CCCC----------------------------CcCCcch
Q 010168          284 TLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE-GASL----------------------------NVDDAGS  334 (516)
Q Consensus       284 v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-g~~~----------------------------~~~~~~~  334 (516)
                      ++.|+++|+..+..|..|.+|+++|+..++.+.++.++.. +.++                            ....+.|
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  201 (291)
T d1s70b_         122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             hhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCC
Confidence            9999999999999999999999999999999998888863 2221                            2244679


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 010168          335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  414 (516)
Q Consensus       335 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v  414 (516)
                      |||.|+..|+.++++.|+++|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.    +++
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~  277 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DIL  277 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGG
T ss_pred             hhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975    578


Q ss_pred             HHHHHccc
Q 010168          415 KLLEDAEC  422 (516)
Q Consensus       415 ~~L~~~~~  422 (516)
                      ++|.+.+.
T Consensus       278 ~~L~~~~~  285 (291)
T d1s70b_         278 GYLEELQK  285 (291)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            88876554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-29  Score=215.52  Aligned_cols=154  Identities=24%  Similarity=0.275  Sum_probs=132.3

Q ss_pred             hhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 010168          202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE  281 (516)
Q Consensus       202 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~  281 (516)
                      ..++.+...+..+....++....++  +..+..|.||||+|+ .|+.+++++|+++|++++..+..|.+||+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--CccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            3456677777777777777765554  556778999999775 7999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 010168          282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR  361 (516)
Q Consensus       282 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~  361 (516)
                      ++++.|++++.+++..|..|.+|||+|+..++.+++++|+++++                              .+++.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~------------------------------~~~~~~  129 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA------------------------------SNVGHR  129 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC------------------------------CCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc------------------------------cccccc
Confidence            99999999999999999999999999999999999998888764                              244567


Q ss_pred             CCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          362 DYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       362 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      |..|.||||+|+..|+.++|++|+++|
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            778888888888888888888888876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=211.04  Aligned_cols=151  Identities=27%  Similarity=0.446  Sum_probs=129.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  315 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~  315 (516)
                      .+|+.||..|+.++|+.|++. ++++|..|..|+||||+|+ .|+.+++++|++++++++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999998876 6889999999999999886 47889999999999999998888999988888888777


Q ss_pred             HHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCC
Q 010168          316 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  395 (516)
Q Consensus       316 ~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  395 (516)
                      ++++++++|+                               +++.+|..|+||||+|+..|+.+++++|+ .|++++.+|
T Consensus        83 ~~~~~l~~~~-------------------------------~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          83 TLKVLVEHGA-------------------------------DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             HHHHHHHTTC-------------------------------CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             cccccccccc-------------------------------ccccccCCCCeeecccccccccccccccc-ccccccccC
Confidence            7777766655                               45567778899999999999999998877 688999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc
Q 010168          396 RWGNTPLDEGRMCGNKNLIKLLEDA  420 (516)
Q Consensus       396 ~~g~tpl~~A~~~~~~~~v~~L~~~  420 (516)
                      ..|+||||+|+..|+.+++++|+++
T Consensus       131 ~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-28  Score=241.76  Aligned_cols=189  Identities=26%  Similarity=0.338  Sum_probs=169.0

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  310 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~  310 (516)
                      .+..+.||+|.++..++.+....|+..+......+..|.||||+|+..++.++++++++.+...+..+..|.|||+.|+.
T Consensus       194 ~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  273 (408)
T d1n11a_         194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ  273 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhh
Confidence            34455666666666666666666666666666667778888999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcC
Q 010168          311 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG  388 (516)
Q Consensus       311 ~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  388 (516)
                      .++.+++++|+++|++++..+  +.||||.++..++.++++.+++.|++++.+|..|+||||+|++.|+.++|++|+++|
T Consensus       274 ~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G  353 (408)
T d1n11a_         274 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  353 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999988754  568999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       389 ~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                      ++++.+|.+|+||||+|+.+||.++|++|..
T Consensus       354 Ad~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         354 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=7.3e-28  Score=217.63  Aligned_cols=187  Identities=27%  Similarity=0.351  Sum_probs=172.5

Q ss_pred             chhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCCCCCCChHHHHHH
Q 010168          231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  309 (516)
Q Consensus       231 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~tpL~~A~  309 (516)
                      .+..|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++............ ........|.++.+.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46779999999999999999999999999999999999999999999999888777766543 33445677899999999


Q ss_pred             HcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHc
Q 010168          310 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA  387 (516)
Q Consensus       310 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  387 (516)
                      ........+.|.+.+++++..+  +.|||+.++..+..++++.+++++.+++..|..|.||||+|+..|+.++|++|+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHC
Confidence            9999999999999999887754  67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          388 GASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       388 g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      |+|++.+|..|+||||+|+++|+.++|++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=8.3e-31  Score=255.81  Aligned_cols=191  Identities=18%  Similarity=0.074  Sum_probs=156.9

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHH---HHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC--CCCChH
Q 010168          230 KHEAELALRVNSAAYHGDLYQLKG---LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--KFGNTP  304 (516)
Q Consensus       230 ~~~~~~~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~tp  304 (516)
                      ..+..|.||||+||..|+.+++++   |++.|+++|.+|.+|+||||+||.+||.++|++|+++|++++..+  .+|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            445678999999999999887765   789999999999999999999999999999999999999998875  469999


Q ss_pred             HHHHHHcCChHHHHHHHHcCCCCCc-----CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCC------------------
Q 010168          305 LLEAIKCGHDGVTSLLVKEGASLNV-----DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR------------------  361 (516)
Q Consensus       305 L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~------------------  361 (516)
                      ||+||..|+.++|++|++.|++...     .++.+|++.|+.+|+.+++++|+++|++++..                  
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            9999999999999999999986543     23456788888999999999999877532210                  


Q ss_pred             ---------------CCC----------------CCcHHHHHHHhChHHHHHHHHHcCCC-----CCCCCCCCCCHHHHH
Q 010168          362 ---------------DYD----------------HRTPLHVAASEGLYLMAKLLLEAGAS-----VFTKDRWGNTPLDEG  405 (516)
Q Consensus       362 ---------------~~~----------------g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~tpl~~A  405 (516)
                                     ..+                +.++++.|+..|+.+++++|++.+..     .+..+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence                           111                13678888888999999999987754     334456799999999


Q ss_pred             HHcCCHHHHHHHHHc
Q 010168          406 RMCGNKNLIKLLEDA  420 (516)
Q Consensus       406 ~~~~~~~~v~~L~~~  420 (516)
                      ++.||.++|++|++.
T Consensus       325 ~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         325 LRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHTCTTHHHHHTTS
T ss_pred             HHcCcHHHHHHHhCC
Confidence            999999999999974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.3e-28  Score=207.79  Aligned_cols=149  Identities=31%  Similarity=0.421  Sum_probs=106.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      ||||.||+.|+.++|+.||++|++++ .|..|+||||+|+..++.++++.++.........+..+.++++.++..     
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-----   77 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-----
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccc-----
Confidence            55556666666666666655555554 355555566655555555555555555555444455555555555544     


Q ss_pred             HHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCC
Q 010168          317 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  396 (516)
Q Consensus       317 v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  396 (516)
                                                .+.++++.+..+|++.+.++.+|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus        78 --------------------------~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~  131 (153)
T d1awcb_          78 --------------------------GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             --------------------------TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             --------------------------ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCC
Confidence                                      455555555556666777888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHH
Q 010168          397 WGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       397 ~g~tpl~~A~~~~~~~~v~~L  417 (516)
                      +|+||||+|+.+|+.+++++|
T Consensus       132 ~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         132 FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=4.8e-30  Score=242.62  Aligned_cols=206  Identities=22%  Similarity=0.222  Sum_probs=170.0

Q ss_pred             HHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH--------HHcCCCCcCCCCCCChHHHH
Q 010168          237 LRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVDINIKDKFGNTPLLE  307 (516)
Q Consensus       237 t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L--------l~~g~~~~~~d~~g~tpL~~  307 (516)
                      ||||.|+. .|+.++++.|.+.+++.... .+|+||||+||..|+.++|++|        +++|+|+|.+|.+|.||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            46664433 57777777777777665332 4699999999999999988877        46799999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHHHcCCHHHHHHHHHCC---C--------------------------
Q 010168          308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG---V--------------------------  356 (516)
Q Consensus       308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g---~--------------------------  356 (516)
                      |+..|+.+++++|+++|++++..+  +.||+++|+..++.++++.+...+   .                          
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            999999999999999999998764  679999999999998887776432   0                          


Q ss_pred             ------------------CCCCCCCCCCcHHHHHHHhChHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 010168          357 ------------------DPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  417 (516)
Q Consensus       357 ------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L  417 (516)
                                        ..+..+..|+||||+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~L  240 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  240 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                              01234557899999999999999998755 57899999999999999999999999999999


Q ss_pred             HHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          418 EDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +++|++...              +...+.+|+|.|...++
T Consensus       241 l~~gadin~--------------~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         241 IQQGASVEA--------------VDATDHTARQLAQANNH  266 (277)
T ss_dssp             HHTTCCSSC--------------CCSSSCCHHHHHHHTTC
T ss_pred             HHCcCCCCC--------------cCCCCCCHHHHHHHcCC
Confidence            999986432              33445689999988887

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6e-28  Score=220.40  Aligned_cols=191  Identities=21%  Similarity=0.234  Sum_probs=159.4

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHHH
Q 010168          267 DGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAV  340 (516)
Q Consensus       267 ~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~  340 (516)
                      +|.||||+|+..|+.+    +++.+...|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+  +.+||+.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            6999999999999864    5556667899999999999999999999999999999999999998855  668999999


Q ss_pred             HcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHH
Q 010168          341 ARGDSDFLKRVLSNGVDPS------SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNL  413 (516)
Q Consensus       341 ~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpl~~A~~~~~~~~  413 (516)
                      ..++.++++.|++.+....      .....|.||||.|+..|+.+++++|+..|+.++..+ .+|+||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999999875543      345668999999999999999999999999988766 579999999999999999


Q ss_pred             HHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccccccceEEEcCCcHHHHHHHHhhh
Q 010168          414 IKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDK  480 (516)
Q Consensus       414 v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  480 (516)
                      +++|+++|++..              .+...+.+|+|.|...++         .+.++.+++...+.
T Consensus       161 v~~Ll~~gad~~--------------~~~~~G~tpl~~A~~~~~---------~~~~~~l~~~~~~~  204 (221)
T d1iknd_         161 VSLLLKCGADVN--------------RVTYQGYSPYQLTWGRPS---------TRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHHHHTTTCCSC--------------CCCTTCCCGGGGCTTSSC---------HHHHHHHHTTSCGG
T ss_pred             HHHHHhcCCccc--------------ccCCCCCCHHHHHHHCCC---------HHHHHHHHHcCCcc
Confidence            999999998643              334556799999988877         55555565544443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1e-26  Score=199.17  Aligned_cols=149  Identities=26%  Similarity=0.320  Sum_probs=123.6

Q ss_pred             hhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 010168          202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE  281 (516)
Q Consensus       202 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~  281 (516)
                      +.+..++..+..+....++....+..   .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44556667777777777776654433   467799999999999999999999998888888888999999999999999


Q ss_pred             HHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 010168          282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR  361 (516)
Q Consensus       282 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~  361 (516)
                      ++++++..+|++++.+|..|+||||+|+..|+.+++++|+++|+++                               +.+
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-------------------------------~~~  129 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------------------------------HTQ  129 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------------------TCC
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC-------------------------------ccc
Confidence            9999999999999999999999999999988888877777766554                               556


Q ss_pred             CCCCCcHHHHHHHhChHHHHHHH
Q 010168          362 DYDHRTPLHVAASEGLYLMAKLL  384 (516)
Q Consensus       362 ~~~g~t~L~~A~~~g~~~~v~~L  384 (516)
                      |..|.||||+|+..|+.+++++|
T Consensus       130 d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHhC
Confidence            66777888888888888777765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.2e-27  Score=216.32  Aligned_cols=196  Identities=25%  Similarity=0.264  Sum_probs=176.0

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCC
Q 010168          248 LYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  326 (516)
Q Consensus       248 ~~~v~~Ll~~g~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  326 (516)
                      .++|++|+++|+|+|. .|.+|.||||+||..|+.+++++|+++|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4899999999999987 589999999999999999999999999999999999999999999999998887777765443


Q ss_pred             CCc---CCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 010168          327 LNV---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  403 (516)
Q Consensus       327 ~~~---~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~  403 (516)
                      ...   ..+.++.+.+.........+.|..++++++.++..|+|||++|+..|..++++.|++++.+++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            332   33567888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          404 EGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       404 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +|+..|+.+++++|+++|++..              .+...+.+|+|.|+.+++
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n--------------~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANRE--------------ITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--------------CCCTTSCCHHHHHHHTTC
T ss_pred             hhccccHHHHHHHHHHCCCCCC--------------CcCCCCCCHHHHHHHcCC
Confidence            9999999999999999998643              234455689999988887

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-25  Score=201.33  Aligned_cols=178  Identities=25%  Similarity=0.268  Sum_probs=150.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCC--cchHHHHH
Q 010168          266 YDGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTA  339 (516)
Q Consensus       266 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A  339 (516)
                      .+|+||||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++.+...  +.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999999875    799999999999999999999999999999999999887744  45677777


Q ss_pred             HHcCCHHHHHHHHH-------------------------------------CCCCC-CCCCCCCCcHHHHHHHhChHHHH
Q 010168          340 VARGDSDFLKRVLS-------------------------------------NGVDP-SSRDYDHRTPLHVAASEGLYLMA  381 (516)
Q Consensus       340 ~~~~~~~~v~~Ll~-------------------------------------~g~~~-~~~~~~g~t~L~~A~~~g~~~~v  381 (516)
                      ...++.++++.+..                                     ...+. ......|.+||+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            77776666665543                                     22221 22345688999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcceeecCCCCCCcccc
Q 010168          382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH  457 (516)
Q Consensus       382 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (516)
                      +.++++|.+++.+|..|.||||+|+..|+.+++++|+++|+++..              +...+.+|+|.|..+++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~--------------~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL--------------KNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--------------CCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC--------------CCCCCCCHHHHHHhCCC
Confidence            999999999999999999999999999999999999999986432              34456699999987776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-25  Score=209.67  Aligned_cols=195  Identities=25%  Similarity=0.335  Sum_probs=160.0

Q ss_pred             hhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCC----------------
Q 010168          201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT----------------  264 (516)
Q Consensus       201 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------------  264 (516)
                      ..++..++..+..+....++.....++ ...+..|.||||+|+..|+.++++.|++.|...+..                
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din-~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            345566666666666655555544443 233446889999999999999999998765443211                


Q ss_pred             ------------------------------------------------------------CCCCCcHHHHHHHcCCHHHH
Q 010168          265 ------------------------------------------------------------DYDGRSPLHLATSRGYEDIT  284 (516)
Q Consensus       265 ------------------------------------------------------------~~~g~t~Lh~A~~~g~~~~v  284 (516)
                                                                                  +..|.||||+|+..|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                        12478899999999999999


Q ss_pred             HHHHHc-CCCCcCCCCCCChHHHHHHHcCC----hHHHHHHHHcCCCCCcC--CcchHHHHHHHcCCHHHHHHHHH-CCC
Q 010168          285 LFLIQK-GVDINIKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLS-NGV  356 (516)
Q Consensus       285 ~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~-~g~  356 (516)
                      ++|+++ |++++..+..|.++++.+...+.    .+++++|+++|++++.+  .+.||||+|+..|+.+++++|++ .|+
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            999975 89999999999999888766543    57999999999999875  46799999999999999999997 599


Q ss_pred             CCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCC
Q 010168          357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  396 (516)
Q Consensus       357 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  396 (516)
                      +++.+|.+|.||||+|++.|+.++|++|+++|||+|++|.
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999999999999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-26  Score=187.55  Aligned_cols=120  Identities=28%  Similarity=0.445  Sum_probs=91.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHH
Q 010168          268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF  347 (516)
Q Consensus       268 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~  347 (516)
                      +.++||+||..|+.++|++|+++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++                   
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-------------------   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-------------------   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccc-------------------
Confidence            457888888888888888888888888888888888887664 566666666666655444                   


Q ss_pred             HHHHHHCCCCCCCCCCCCC-cHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010168          348 LKRVLSNGVDPSSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  419 (516)
Q Consensus       348 v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~  419 (516)
                                  .++..|. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        63 ------------~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          63 ------------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ------------CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ------------cccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                        4444443 57888888888888888888888888888888888888888888888887764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.9e-26  Score=216.19  Aligned_cols=170  Identities=19%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             hhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-------HHHHHHHHcCCCCcCCCCCCChH
Q 010168          232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKDKFGNTP  304 (516)
Q Consensus       232 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~-------~~v~~Ll~~g~~~~~~d~~g~tp  304 (516)
                      +..|.||||+||..|+.++|+.|+++|++++.+|..|+||||+||..++.       +++++|.   .+++.+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            56788888888888888888888888888888888888888888876642       3444433   3456677888888


Q ss_pred             HHHHHHcCCh----H--------HHHHHHHcCCCCCcCC---cchHHHHHHHcCCHHHHH-----HHHHCCCCCCCCCCC
Q 010168          305 LLEAIKCGHD----G--------VTSLLVKEGASLNVDD---AGSFLCTAVARGDSDFLK-----RVLSNGVDPSSRDYD  364 (516)
Q Consensus       305 L~~A~~~~~~----~--------~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~v~-----~Ll~~g~~~~~~~~~  364 (516)
                      ||+++..+..    .        ++.++++.+.......   ..++++.+........+.     .++.  ..+|.+|.+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCCCC
Confidence            8888765542    2        3344445443332211   223333333322222221     1222  237889999


Q ss_pred             CCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 010168          365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  406 (516)
Q Consensus       365 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~  406 (516)
                      |+||||+|++.|+.++|++|+++|++++.+|+.|+|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=184.50  Aligned_cols=120  Identities=27%  Similarity=0.364  Sum_probs=104.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC-hHHHHHHHcCC
Q 010168          235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGH  313 (516)
Q Consensus       235 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-tpL~~A~~~~~  313 (516)
                      +.++||.||..|+.++|++|+++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            357899999999999999999999999999999999999775 7999999999999999999998876 69999998888


Q ss_pred             hHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      .+++++|+++|++                               ++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~-------------------------------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGAR-------------------------------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCC-------------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc-------------------------------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888777776655                               45667778888888888888888888864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=8.2e-26  Score=183.90  Aligned_cols=105  Identities=33%  Similarity=0.363  Sum_probs=74.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHH
Q 010168          270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLK  349 (516)
Q Consensus       270 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~  349 (516)
                      |||++|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+                        
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~------------------------   59 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA------------------------   59 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC------------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccc------------------------
Confidence            67777777777777777777777777777777777777766666665555555443                        


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 010168          350 RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  405 (516)
Q Consensus       350 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  405 (516)
                             +++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus        60 -------din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          60 -------DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             -------TTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             -------eeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence                   4455666777777777777777777777777777777777777887776

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.2e-25  Score=182.97  Aligned_cols=94  Identities=40%  Similarity=0.530  Sum_probs=88.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChH
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  315 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~  315 (516)
                      .|||++|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHcCCCCCc
Q 010168          316 VTSLLVKEGASLNV  329 (516)
Q Consensus       316 ~v~~Ll~~g~~~~~  329 (516)
                      ++++|+++|++++.
T Consensus        83 ~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          83 CVKLLLSKGADKTV   96 (118)
T ss_dssp             HHHHHHTTCCCSSS
T ss_pred             hhhhhhccccccee
Confidence            88888877666553

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=179.57  Aligned_cols=119  Identities=29%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHH
Q 010168          271 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR  350 (516)
Q Consensus       271 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~  350 (516)
                      +|+.||..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+                         
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~-------------------------   58 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-------------------------   58 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccc-------------------------
Confidence            4455555555555555555555555555555555555544444444444443332                         


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHHc
Q 010168          351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEG--RMCGNKNLIKLLEDA  420 (516)
Q Consensus       351 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A--~~~~~~~~v~~L~~~  420 (516)
                            +++.+|.+|+||||+|+..|+.++|++|+++|++++..+. .|+||++++  +..|+.+++++|++.
T Consensus        59 ------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          59 ------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             ------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ------ccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence                  2233444455555555555555555555555555554432 344444433  344555555555543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.9e-27  Score=231.75  Aligned_cols=186  Identities=11%  Similarity=-0.056  Sum_probs=145.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCCcCCCCCCChHHHHHHHcCChHHHHHHHHcCCCCCcC----CcchH
Q 010168          263 KTDYDGRSPLHLATSRGYEDITLF---LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----DAGSF  335 (516)
Q Consensus       263 ~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~~~  335 (516)
                      .++..|+||||+||.+|+.+++++   |++.|+++|.+|..|+||||+||+.||.++|++|+++|++++..    +|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            446689999999999999887776   78899999999999999999999999999999999999998764    36799


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCC-----------------
Q 010168          336 LCTAVARGDSDFLKRVLSNGVDPS---SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-----------------  395 (516)
Q Consensus       336 l~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------  395 (516)
                      ||+|+..|+.+++++|++.|++..   ..+.+|.||+|.|+..|+.++|++|+++|++++..+                 
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            999999999999999999987653   334567788889999999999999998876543210                 


Q ss_pred             ----------------CC----------------CCCHHHHHHHcCCHHHHHHHHHcccCccccccccCccccccCCCcc
Q 010168          396 ----------------RW----------------GNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRK  443 (516)
Q Consensus       396 ----------------~~----------------g~tpl~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (516)
                                      ..                +.++++.|+..|+.+++++|++.++.....         .......
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~---------~~~~~~~  315 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA---------PTATIPG  315 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS---------SCCSSTT
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhc---------ccccCCC
Confidence                            11                135777888888899999999877643221         1122223


Q ss_pred             eeecCCCCCCcccc
Q 010168          444 CTVFPFHPWDEKVH  457 (516)
Q Consensus       444 ~~~~~~~~~~~~~~  457 (516)
                      .+-+|+|.|+..|+
T Consensus       316 ~g~T~LhlA~~~Gn  329 (346)
T d2ajaa1         316 DANELLRLALRLGN  329 (346)
T ss_dssp             CCCHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHcCc
Confidence            45589999999998

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=179.44  Aligned_cols=93  Identities=30%  Similarity=0.444  Sum_probs=89.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHHHHHHcCChHH
Q 010168          237 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  316 (516)
Q Consensus       237 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~  316 (516)
                      ++|+.||..|+.++|+.|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCc
Q 010168          317 TSLLVKEGASLNV  329 (516)
Q Consensus       317 v~~Ll~~g~~~~~  329 (516)
                      +++|+++|++++.
T Consensus        83 v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          83 CKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHHTTCCTTC
T ss_pred             HHHHHHcCCCccc
Confidence            9999998888764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.1e-22  Score=172.67  Aligned_cols=123  Identities=21%  Similarity=0.201  Sum_probs=92.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCChHHH
Q 010168          236 ALRVNSAAYHGDLYQLKGLIRAGADPNKT------DYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLL  306 (516)
Q Consensus       236 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~tpL~  306 (516)
                      ...|+.|+..+++..+..++..|+|++..      +..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            34577888999999999888888886643      56788888888864   5778888888888888888888888888


Q ss_pred             HHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          307 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       307 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      +||..|+.+++++|+++|+                               +++.+|..|+||||+|+..|+.+++++|++
T Consensus        87 ~A~~~~~~~~v~~Ll~~ga-------------------------------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKA-------------------------------SIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccCc-------------------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8877777766666665544                               344566667777777777777777777777


Q ss_pred             cCC
Q 010168          387 AGA  389 (516)
Q Consensus       387 ~g~  389 (516)
                      .++
T Consensus       136 ~~~  138 (154)
T d1dcqa1         136 ALS  138 (154)
T ss_dssp             HHT
T ss_pred             hCC
Confidence            554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.3e-22  Score=172.40  Aligned_cols=128  Identities=23%  Similarity=0.176  Sum_probs=106.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCC------CCCCChHHHHHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCC
Q 010168          271 PLHLATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD  344 (516)
Q Consensus       271 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~  344 (516)
                      .|+.|+..++...+..++..|+|++.+      +..|+||||+|+..+.                            .++
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------------------------~~~   60 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD----------------------------RTS   60 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------------------------TTT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC----------------------------CCC
Confidence            345677888888888888888876654      5667777777775421                            244


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcccCc
Q 010168          345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ  424 (516)
Q Consensus       345 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~v~~L~~~~~~~  424 (516)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++..
T Consensus        61 ~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          61 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            56666666777788889999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             cc
Q 010168          425 LS  426 (516)
Q Consensus       425 ~~  426 (516)
                      ..
T Consensus       141 ~~  142 (154)
T d1dcqa1         141 FN  142 (154)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=173.11  Aligned_cols=128  Identities=29%  Similarity=0.402  Sum_probs=111.9

Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCChHHH
Q 010168          227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  306 (516)
Q Consensus       227 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL~  306 (516)
                      ..+..+..|.||||+|+ .|+.+++++|++.+++++..+..|.+|+++|+..++.+++++++++|+++|.+|..|.||||
T Consensus        28 ~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~  106 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH  106 (156)
T ss_dssp             CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeec
Confidence            34566778999999886 58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHcCCCCCcCCcchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 010168          307 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE  386 (516)
Q Consensus       307 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  386 (516)
                      +|+..|+.+++++|+ .|+                               +++.+|.+|+||||+|+..|+.+++++|++
T Consensus       107 ~A~~~~~~~i~~~L~-~~~-------------------------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         107 LAVQEGHTAVVSFLA-AES-------------------------------DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHTCHHHHHHHH-TTS-------------------------------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccccc-ccc-------------------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999988888776 344                               455667778888888888888888888876


Q ss_pred             c
Q 010168          387 A  387 (516)
Q Consensus       387 ~  387 (516)
                      +
T Consensus       155 h  155 (156)
T d1bd8a_         155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.3e-22  Score=191.83  Aligned_cols=171  Identities=14%  Similarity=0.032  Sum_probs=113.0

Q ss_pred             ccchhhhhhhhhccchhhhhhhhccccccccccchhhhHHHHHHHHhcCCH-------HHHHHHHHcCCCCCCCCCCCCc
Q 010168          198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDL-------YQLKGLIRAGADPNKTDYDGRS  270 (516)
Q Consensus       198 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~g~t  270 (516)
                      ..+.+.++.+...+...+...++....  +....+..|.||||.||..++.       ++++++   +..++.+|..|+|
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l---~~~~~~~d~~g~t  179 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL---YPCLILEDSMNRT  179 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH---GGGGGEECTTCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH---hhhhhhcccccCC
Confidence            456788888888777777766666554  4456677899999999987752       334443   2346677889999


Q ss_pred             HHHHHHHcCC----HHH--------HHHHHHcCCC-CcCCCCCCChHHHHHHHcCChHHH-----HHHHHcCCCCCcCCc
Q 010168          271 PLHLATSRGY----EDI--------TLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVT-----SLLVKEGASLNVDDA  332 (516)
Q Consensus       271 ~Lh~A~~~g~----~~~--------v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~~~~~v-----~~Ll~~g~~~~~~~~  332 (516)
                      |||+|+..+.    ..+        +.+++..+.. .......+.++++.+........+     ..++....+....+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            9999986543    233        3445555433 334556666777776655554433     333444455555678


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010168          333 GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA  373 (516)
Q Consensus       333 ~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  373 (516)
                      +||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            89999999999999999999999999999999999999985

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.2e-19  Score=148.62  Aligned_cols=121  Identities=21%  Similarity=0.297  Sum_probs=112.9

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeee-EEEecCCCeeecc
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET-VSQLQPNSSFGEV  161 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~-l~~l~~G~~fGe~  161 (516)
                      ++|+++|+|++|+++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.+ +..+.+|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            579999999999999999999999999999999999999999999999999999999888887654 8899999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhh
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV  203 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~  203 (516)
                      +++.+.+++++++|.++|.++.++++.|.+++..+|+...+.
T Consensus        82 ~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~~  123 (132)
T d1ne6a2          82 ALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRN  123 (132)
T ss_dssp             HHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHHG
T ss_pred             eecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHHH
Confidence            999999999999999999999999999999999988654443

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.9e-19  Score=147.23  Aligned_cols=125  Identities=23%  Similarity=0.385  Sum_probs=115.2

Q ss_pred             HHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        78 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      .......|+++|+|++++++++..++..++.+.|+||++|+++|++++.+|+|.+|.|+++. ..+|.+..+..+.+|++
T Consensus        11 ~~~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~-~~~~~~~~~~~l~~g~~   89 (136)
T d1cx4a1          11 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS   89 (136)
T ss_dssp             HHHHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-EETTEEEEEEEEESSCE
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEee-ccccceeeeeccCCccc
Confidence            34455789999999999999999999999999999999999999999999999999999976 55777888899999999


Q ss_pred             eeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhh
Q 010168          158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKV  203 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~  203 (516)
                      ||+.+++.+.|+.++++|.++|.++.++++.|..++..++...+++
T Consensus        90 fg~~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1cx4a1          90 FGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM  135 (136)
T ss_dssp             ECHHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhc
Confidence            9999999999999999999999999999999999999988766553

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=6.4e-19  Score=155.99  Aligned_cols=143  Identities=22%  Similarity=0.378  Sum_probs=130.6

Q ss_pred             HHhhccCCHHHHHHHHHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEec
Q 010168           62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG  141 (516)
Q Consensus        62 ~d~~~~~P~~~~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~  141 (516)
                      -.+++.+|..+-.++..+.+..+++++|+|++++++++..|+..++...|.||++|+++|++++.+|||.+|.|.++.  
T Consensus        47 ~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~--  124 (193)
T d1q3ea_          47 DSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--  124 (193)
T ss_dssp             HHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC--
T ss_pred             HHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec--
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             CCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       142 ~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      .++   ....+.+|++||+.+++.+.+++++++|.++|.++.+++++|.+++..+|.....+...+..
T Consensus       125 ~~~---~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~  189 (193)
T d1q3ea_         125 KGN---KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  189 (193)
T ss_dssp             -CC---CEEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             CCc---ceeeeccceeeeeeeccCCCcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            222   24578999999999999999999999999999999999999999999999887776655543

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=8.9e-19  Score=147.82  Aligned_cols=123  Identities=18%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecC------CCCeeeEEEecCCC
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE------DGSEETVSQLQPNS  156 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~------~g~~~~l~~l~~G~  156 (516)
                      .+|+++|+|++++++++..++..++.+.|+||++|+++|++++.+|+|++|.|+++....      +|+...+..+.+|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            579999999999999999999999999999999999999999999999999999987543      45667789999999


Q ss_pred             eeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhh
Q 010168          157 SFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLT  205 (516)
Q Consensus       157 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~  205 (516)
                      +||+.+++.+.++.++++|.++|+++.+++++|..++..++......+.
T Consensus        82 ~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~  130 (147)
T d1cx4a2          82 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA  130 (147)
T ss_dssp             EESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHH
T ss_pred             EeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence            9999999999999999999999999999999999999887755444433

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.3e-18  Score=144.23  Aligned_cols=118  Identities=25%  Similarity=0.341  Sum_probs=107.9

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeee
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG  159 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fG  159 (516)
                      ...+.+++.++|++++++++..++..++.+.|++|++|+++||+++.+|+|.+|.++++.     ....+..+++|++||
T Consensus        17 ~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~-----~~~~~~~l~~G~~fG   91 (136)
T d1ne6a1          17 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNEWATSVGEGGSFG   91 (136)
T ss_dssp             HHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-----TTEEEEEECTTCEEC
T ss_pred             HHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeec-----cccccceeccccccc
Confidence            345789999999999999999999999999999999999999999999999999999986     223567899999999


Q ss_pred             ccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchh
Q 010168          160 EVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK  202 (516)
Q Consensus       160 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  202 (516)
                      +.+++.+.++.++++|.++|.++.+++++|..++..++...++
T Consensus        92 e~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r~  134 (136)
T d1ne6a1          92 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  134 (136)
T ss_dssp             CHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHHH
T ss_pred             cHHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHHh
Confidence            9999999999999999999999999999999999988755433

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.76  E-value=1.5e-18  Score=146.39  Aligned_cols=132  Identities=17%  Similarity=0.132  Sum_probs=119.5

Q ss_pred             hcHHHhhcccCccCCCHHHHHHHHHHhh--cceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           80 LYMPYIEKVSLFKGCSSEFINQIVIRVH--EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        80 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~--~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ...+.|.++|+|++++++++..|...++  .+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++
T Consensus         3 ~~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~   82 (147)
T d1zyba2           3 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL   82 (147)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred             hHHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCE
Confidence            3456789999999999999999998765  57899999999999999999999999999999999999999999999999


Q ss_pred             eeccccccCCCc-ceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          158 FGEVSILCNIPQ-PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       158 fGe~~ll~~~~~-~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      ||+.+++.+.++ ++++.|.++|.++.++++.+.+++..+|.....++..+..+.
T Consensus        83 fGe~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~r~  137 (147)
T d1zyba2          83 IEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA  137 (147)
T ss_dssp             ECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred             eccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            999999877775 799999999999999999999999999988888777665443

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.4e-17  Score=141.53  Aligned_cols=127  Identities=26%  Similarity=0.337  Sum_probs=114.7

Q ss_pred             HHHhcHHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecC--CCCeeeEEEecC
Q 010168           77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE--DGSEETVSQLQP  154 (516)
Q Consensus        77 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~--~g~~~~l~~l~~  154 (516)
                      ..+.....+++.++|+.++++.+..++..++.+.|+||++|+++||+++.+|+|.+|.|+++....  +|+...+..+++
T Consensus        18 ~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~~l~~   97 (155)
T d1o7fa2          18 DVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGI   97 (155)
T ss_dssp             HHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECT
T ss_pred             HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecccccccccccccccc
Confidence            445666788999999999999999999999999999999999999999999999999999887544  356678899999


Q ss_pred             CCeeeccccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhh
Q 010168          155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL  204 (516)
Q Consensus       155 G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l  204 (516)
                      |++||+ +++.+.++.++++|.++|+++.+++++|..+++.+++....++
T Consensus        98 g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~~ll  146 (155)
T d1o7fa2          98 GTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL  146 (155)
T ss_dssp             TCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred             cccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence            999998 8999999999999999999999999999999999987665544

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.73  E-value=2.4e-18  Score=142.29  Aligned_cols=122  Identities=21%  Similarity=0.316  Sum_probs=111.7

Q ss_pred             HHHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecc
Q 010168           82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  161 (516)
Q Consensus        82 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~  161 (516)
                      .++|+++|+|++++++++..+...++.+.|+||++|+++|++++.+|+|.+|.|+++.  .++     ..+.+|++||+.
T Consensus        10 ~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~--~~~-----~~l~~G~~~G~~   82 (133)
T d1vp6a_          10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT--PNP-----VELGPGAFFGEM   82 (133)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS--SSC-----EEECTTCEECHH
T ss_pred             HHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEE--eee-----eeeccCcccccc
Confidence            3679999999999999999999999999999999999999999999999999999875  222     247999999999


Q ss_pred             ccccCCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       162 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +++.+.++.++++|.++|.++.++++.+.+++..+|.....+++.+.++
T Consensus        83 ~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999888877766654

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=5.8e-18  Score=140.44  Aligned_cols=119  Identities=17%  Similarity=0.228  Sum_probs=104.2

Q ss_pred             HHhhcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCC-eeeEEEecCCCeeecc
Q 010168           83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS-EETVSQLQPNSSFGEV  161 (516)
Q Consensus        83 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~-~~~l~~l~~G~~fGe~  161 (516)
                      ..|+++|+|++++++++.+|+..++++.|+||++|+++|++++.+|||.+|.|+++....++. ...+..+++|++|||.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            358999999999999999999999999999999999999999999999999999987554433 3457789999999998


Q ss_pred             cccc---------CCCcceEEEEeeeeeEEEeeccchhhHHHhhhccch
Q 010168          162 SILC---------NIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGR  201 (516)
Q Consensus       162 ~ll~---------~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~  201 (516)
                      +++.         ..+++++++|.++|+++.+.+++|.+++.+++..+.
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r~~p  134 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP  134 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred             hHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhcccCC
Confidence            8752         235678999999999999999999999998876653

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.71  E-value=8.9e-18  Score=140.64  Aligned_cols=121  Identities=15%  Similarity=0.181  Sum_probs=110.4

Q ss_pred             CccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc
Q 010168           90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ  169 (516)
Q Consensus        90 ~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~  169 (516)
                      +|+.++++++..+...++++.|++|++|+.+|++++.+|+|.+|.++++..+++|++.++..+++|++||+.+++.+.|+
T Consensus         8 lf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~   87 (142)
T d2gaua2           8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETC   87 (142)
T ss_dssp             HHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCC
T ss_pred             HHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       170 ~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      ..+++|.++|.++.++.+.+.+++..+|.....++..+..+
T Consensus        88 ~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~r  128 (142)
T d2gaua2          88 SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  128 (142)
T ss_dssp             SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888877766543

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.8e-17  Score=131.63  Aligned_cols=116  Identities=19%  Similarity=0.297  Sum_probs=104.2

Q ss_pred             HhcHHHhhcccCccCCCHHHHHHHHHHhhccee-CCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCe
Q 010168           79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFF-LPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  157 (516)
Q Consensus        79 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~  157 (516)
                      ......|+++|+|+.++++.+.+|+..+..+.+ ++|++|+++||+++.+|+|.+|.|+++.   . +......+++|++
T Consensus         6 ~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~---~-~~~~~~~~~~G~~   81 (124)
T d1o7fa3           6 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---Y-GKGVVCTLHEGDD   81 (124)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---T-TTEEEEEEETTCE
T ss_pred             HHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEE---e-eeeecccccCCcc
Confidence            446678999999999999999999999987665 6899999999999999999999999886   2 2345778999999


Q ss_pred             eeccccccCCCcceEEEEeee-eeEEEeeccchhhHHHhhhc
Q 010168          158 FGEVSILCNIPQPYTVCICEL-SRLLRIDKQSFTNILEIYFC  198 (516)
Q Consensus       158 fGe~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~ll~~~~~  198 (516)
                      ||+.+++.+.++.++++|.++ |.++.+++++|..+++.+|.
T Consensus        82 fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          82 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hhhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            999999999999999999986 79999999999999998875

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.6e-16  Score=131.15  Aligned_cols=115  Identities=14%  Similarity=0.232  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccC-CCcceEE
Q 010168           95 SSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN-IPQPYTV  173 (516)
Q Consensus        95 ~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~-~~~~~tv  173 (516)
                      +++.++.+..+++.+.|++|++|+++|++++.+|||++|.++++..+.+|++.++..+.+|++||+.+++.+ .++.+++
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~   81 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWV   81 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEE
Confidence            567899999999999999999999999999999999999999999999999999999999999999988865 6789999


Q ss_pred             EEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhh
Q 010168          174 CICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE  209 (516)
Q Consensus       174 ~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~  209 (516)
                      +|.++|.++.++.+.|.+++..++.....++..+..
T Consensus        82 ~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~  117 (132)
T d1i5za2          82 RAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  117 (132)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             EEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            999999999999999999999999888777766654

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=2.2e-16  Score=130.57  Aligned_cols=114  Identities=14%  Similarity=0.223  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccC----CCcceE
Q 010168           97 EFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN----IPQPYT  172 (516)
Q Consensus        97 ~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~----~~~~~t  172 (516)
                      ++++.+...++.+.|++|++|+++|++++.+|+|++|.|+++..+.+|++.++..+.+|++||+.+++.+    .+++++
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            6788999999999999999999999999999999999999999999999999999999999999998754    467899


Q ss_pred             EEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          173 VCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       173 v~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      ++|.++|.++.++.+.|.+++..+|.....+++.+..+
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~r  120 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR  120 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877766544

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.62  E-value=2.6e-16  Score=130.88  Aligned_cols=123  Identities=15%  Similarity=0.094  Sum_probs=112.1

Q ss_pred             hcccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeecccccc
Q 010168           86 EKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC  165 (516)
Q Consensus        86 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~  165 (516)
                      ..+..+.-+|.++++.+...++.+.|++|++|+++|++++.+|+|++|.++++..+.+|++.++..+.+|++||+..   
T Consensus         4 ~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~---   80 (139)
T d3e5ua2           4 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY---   80 (139)
T ss_dssp             CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS---
T ss_pred             hhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh---
Confidence            34455777888999999999999999999999999999999999999999999999999999999999999999854   


Q ss_pred             CCCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhcc
Q 010168          166 NIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK  211 (516)
Q Consensus       166 ~~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~  211 (516)
                      ..++..++.|.++|.++.++++.|..+++.+|.....+++.+..+.
T Consensus        81 ~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r~  126 (139)
T d3e5ua2          81 PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV  126 (139)
T ss_dssp             CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999888887654

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=7.9e-16  Score=126.30  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=102.7

Q ss_pred             HHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc-ceEEEEee
Q 010168           99 INQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ-PYTVCICE  177 (516)
Q Consensus        99 l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~-~~tv~a~~  177 (516)
                      ++.+...++.+.|++|++|+++|++++.+|+|++|.++++....+|++..+..+.+|++||+.+++.+.++ ++++.|.+
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~   82 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGE   82 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESS
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeec
Confidence            45677788999999999999999999999999999999999999999999999999999999999988765 68999999


Q ss_pred             eeeEEEeeccchhhHHHhhhccchhhhhhhhhc
Q 010168          178 LSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG  210 (516)
Q Consensus       178 ~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~  210 (516)
                      +|.++.++++.+.+++..+|.....+++.+..+
T Consensus        83 ~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~  115 (129)
T d1o5la1          83 NSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH  115 (129)
T ss_dssp             SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            999999999999999999998888887776543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.58  E-value=4.6e-16  Score=128.02  Aligned_cols=119  Identities=14%  Similarity=0.085  Sum_probs=108.4

Q ss_pred             cccCccCCCHHHHHHHHHHhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccC
Q 010168           87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN  166 (516)
Q Consensus        87 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~  166 (516)
                      +.++|..|++++++.+...++.+.|++|++|+++|++++.+|+|++|.++++..+ +|++.++..+++|++||+.     
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~-~g~e~~l~~~~~g~~f~~~-----   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVG-EEREISLFYLTSGDMFCMH-----   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEE-TTEEEEEEEEETTCEEESC-----
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccc-cccceeecccccccccccc-----
Confidence            5688999999999999999999999999999999999999999999999999755 6888999999999999874     


Q ss_pred             CCcceEEEEeeeeeEEEeeccchhhHHHhhhccchhhhhhhhhccch
Q 010168          167 IPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGKES  213 (516)
Q Consensus       167 ~~~~~tv~a~~~~~l~~l~~~~~~~ll~~~~~~~~~~l~~ll~~~~~  213 (516)
                        ++++++|.++|.++.++++.|.+++..+|.....+++.+..+...
T Consensus        77 --~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~rl~~  121 (132)
T d1ft9a2          77 --SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTS  121 (132)
T ss_dssp             --SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             --ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              468899999999999999999999999999999888877665443

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=94.00  E-value=0.33  Score=34.04  Aligned_cols=92  Identities=14%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             HhhcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCc--ceEEEE-eeeeeE
Q 010168          105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ--PYTVCI-CELSRL  181 (516)
Q Consensus       105 ~~~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~--~~tv~a-~~~~~l  181 (516)
                      ..+++.|.+.|.|+.|=||.+...|+-+|..++...+.+|.-..+ .+..|.+.-...+++....  ..+.+. .+....
T Consensus        10 gikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnl-qyykgafiimsg~idt~~~lgyynlevise~ata   88 (131)
T d2bgca2          10 GIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNL-QYYKGAFVIMSGFIDTETSVGYYNLEVISEQATA   88 (131)
T ss_dssp             TCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEE-EEEESSEEEESBCTTTCCBSCCCEEEECSSEEEE
T ss_pred             CCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEee-eeccccEEEEecccccCCccceeeeeeehhccee
Confidence            467899999999999999999999999999999999988875444 4456776655555433322  233333 345677


Q ss_pred             EEeeccchhhHHHhhh
Q 010168          182 LRIDKQSFTNILEIYF  197 (516)
Q Consensus       182 ~~l~~~~~~~ll~~~~  197 (516)
                      +.+...++.+++..+.
T Consensus        89 yvikisdlk~lvs~dl  104 (131)
T d2bgca2          89 YVIKINELKELLSKNL  104 (131)
T ss_dssp             EEEEHHHHHHHHHHCH
T ss_pred             eeEEHHHHHHHHHHhH
Confidence            8888888888876543

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.22  E-value=1.5  Score=32.10  Aligned_cols=67  Identities=13%  Similarity=0.075  Sum_probs=46.5

Q ss_pred             hcceeCCCCeEEecCCccCeEEEEEeceEEEEEecCCCCeeeEEEecCCCeeeccccccCCCcceEEEEeeeeeEEEe
Q 010168          107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI  184 (516)
Q Consensus       107 ~~~~~~~ge~i~~~g~~~~~~y~I~~G~v~i~~~~~~g~~~~l~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~l  184 (516)
                      ....++||+.+-..--+.+.+++|++|.+.+..   +|+.   ..+.+|+.+--     .......+++.+++.++.+
T Consensus        40 ~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~i-----p~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          40 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVM-----PAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEE-----CTTSCEEEEESSCEEEEEE
T ss_pred             EEEEECCCCCcceEECCCCEEEEEEeCEEEEEE---ccEE---EEecCCEEEEc-----CCCCeEEeEECCCcEEEEE
Confidence            345678999887777778899999999999876   4442   56799987442     2223345566777766544