Citrus Sinensis ID: 010176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
Protein Sequence
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIENY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccHHHHHHHHHHccccccccccEEEEcccccccccHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHccHHHHHHHHcccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccHEEEcccccHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEEccccccccHHHHHHHcccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEEEEccccEEEEcHHHHHHHHHHcccccccccHHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKykyhmgnqdiaplldrtesgrvgnlerFSHYVARqmgfddtnecpQLCKLAYEYLKKSKGCEDNIYEYfskeaepeSLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGeshctdvmvpaalserspvlllmgggmgagksTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALsskghhddmLQTAELVHQSSTDAASSLLVTALNEgrdvimdgtlswvpFVEQTIAMARNVHKSryrmgvgykvnedGTVIENYWEQVKEGEEDYQQKenrqvfsrkpyrIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLyctnavggpprliawkdgdsnllvdsdeikcltrvgslnadadsvyelhsepnpifepgsvwndivlcpsraglQLELRTSIKKIENY
Flexible Loop (DISEMBL)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQrfekvtkdlkmkrVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEedyqqkenrqvfsrkpyrielvgVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAglqlelrtsikkieny
Low Complexity Region (SEG)
MHLDSGHGKAIISHIaaasfvgafaaaasHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVlllmgggmgagKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIENY
Disordered region (IsUnstruct)
********KAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS**********************SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVK************QVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLEL**********
Disordered Region (DISOPRED)
***********ISHIAAASFVGAFAAAASHYRRQK*********IA**LDR*****VGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAI**********************VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS*****DM*QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE**********************YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNP*****SVWNDIVLCPSRAGLQLELRTSIKKI***
Disordered Region (DISEMBL)
********KAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIENY
Disordered Region (DISPRO)
*****GHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDY*****RQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNP*FEPGSVWNDIVLCPSRAGLQLELRTSIKKIENY
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLDSGHGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIENY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
356576489	523	PREDICTED: uncharacterized protein LOC10	0.990	0.977	0.725	0.0
357441011	520	hypothetical protein MTR_1g075200 [Medic	0.980	0.973	0.701	0.0
297737168	1388	unnamed protein product [Vitis vinifera]	0.976	0.363	0.717	0.0
357441017	511	hypothetical protein MTR_1g075250 [Medic	0.965	0.974	0.677	0.0
359477383	893	PREDICTED: uncharacterized protein LOC10	0.976	0.564	0.717	0.0
225432931	526	PREDICTED: uncharacterized protein LOC10	0.976	0.958	0.723	0.0
255559959	509	conserved hypothetical protein [Ricinus	0.965	0.978	0.668	0.0
225432937	518	PREDICTED: uncharacterized protein LOC10	0.988	0.984	0.727	0.0
449518501	572	PREDICTED: uncharacterized protein LOC10	0.968	0.874	0.666	0.0
225437257	536	PREDICTED: uncharacterized protein LOC10	0.957	0.921	0.677	0.0

>gi|356576489|ref|XP_003556363.1| PREDICTED: uncharacterized protein LOC100796923 [Glycine max]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/520 (72%), Positives = 429/520 (82%), Gaps = 9/520 (1%)

Query: 1   MHLDSGHGKAI-ISHIAAASFVGAFAAAASHYRRQKYKYHMGNQD-IAPLLDRTESGRVG 58
           M  DS  GK    +H+ AASF G  AAAA+   R+     +G Q  + P L RTESGR+G
Sbjct: 1   MDQDSSIGKVFKFTHVLAASFAGLVAAAAASSYRRAPSTVVGEQKKVIPELRRTESGRLG 60

Query: 59  NLERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKE--AEPESLYVK 116
            +E+FSHYVARQMGF+D +E P+LC LA EYLKKSKGC+++I+EY S       +SLY K
Sbjct: 61  EIEKFSHYVARQMGFEDADEVPELCILAQEYLKKSKGCDESIFEYISSGNVENTDSLYAK 120

Query: 117 LVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKM 176
           LVEE +RCILSY  FHW+ A+ +ISQVL VES++K KLK  ++AATR+QRF++VTK+LK+
Sbjct: 121 LVEELERCILSYLAFHWNQATSVISQVLGVESQQKKKLKGILLAATREQRFDRVTKNLKV 180

Query: 177 KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236
            RV STLVEEMKAI   G+S CT+VMVP A SERSPVLL MGGGMGAGKSTVLKDI+KES
Sbjct: 181 TRVISTLVEEMKAIN--GDSQCTEVMVPMAHSERSPVLLFMGGGMGAGKSTVLKDILKES 238

Query: 237 FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALN 296
           FWSGAA+NAVVVEADAFKE+DVIYRALSS+GHHDDMLQTAELVHQSSTDAASSLLVTALN
Sbjct: 239 FWSGAASNAVVVEADAFKESDVIYRALSSRGHHDDMLQTAELVHQSSTDAASSLLVTALN 298

Query: 297 EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED 356
           EGRDVIMDGTLSW PFVEQTIAMARNVHK RYRMGVGYKV EDGT+ ENYWEQV + EE 
Sbjct: 299 EGRDVIMDGTLSWEPFVEQTIAMARNVHKHRYRMGVGYKVAEDGTITENYWEQVNDAEE- 357

Query: 357 YQQKE--NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFAN 414
           +Q +E  N +  ++KPYRIELVGVVCD YLAVVRGIRRAIM  RAVRVNSQLKSHKRFAN
Sbjct: 358 HQSEEISNGEAHTQKPYRIELVGVVCDGYLAVVRGIRRAIMTGRAVRVNSQLKSHKRFAN 417

Query: 415 AFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVY 474
           AF  YC+LVDNARLYCTNAVGGPP+LI  KDGD NLLVD +EIKCL  +GSLNA ADS+Y
Sbjct: 418 AFPRYCKLVDNARLYCTNAVGGPPKLIGRKDGDHNLLVDREEIKCLETLGSLNAGADSIY 477

Query: 475 ELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIE 514
           ELH EP+PI EPGSVWNDIV+ PSR   Q EL+ SI+KIE
Sbjct: 478 ELHKEPSPIMEPGSVWNDIVMSPSRPSDQKELKESIQKIE 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441011|ref|XP_003590783.1| hypothetical protein MTR_1g075200 [Medicago truncatula] gi|355479831|gb|AES61034.1| hypothetical protein MTR_1g075200 [Medicago truncatula]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/513 (70%), Positives = 418/513 (81%), Gaps = 7/513 (1%)

Query: 6   GHGKAI-ISHIAAASFVGAFAAAA-SHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERF 63
           G GKAI ++H+ AASF G  AAAA S YR+Q+    + +  I P +DRTESGR+  +E+F
Sbjct: 5   GIGKAIRLTHVLAASFAGLIAAAAASRYRKQESTV-VTDDKIIPHVDRTESGRLEKIEKF 63

Query: 64  SHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDR 123
           SHYVARQ+GF+D +E P+LCKLA EYL+KSKGC+ +I+EY   E + ESLYVKLV EF++
Sbjct: 64  SHYVARQIGFEDASEVPELCKLAQEYLQKSKGCDQSIFEYLGNEKDYESLYVKLVNEFEK 123

Query: 124 CILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTL 183
           CILSYF FHW  A  +ISQ+L  ES+ KTKLK+ ++AATRKQRFE+VTK+LK+ RVFSTL
Sbjct: 124 CILSYFAFHWKQAPFVISQILKTESQHKTKLKEILLAATRKQRFERVTKNLKVTRVFSTL 183

Query: 184 VEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243
           VEEMK I   G S   +VMVP  LSER+PVLL MGGGMGAGKSTVLKDI+KESFW GAA+
Sbjct: 184 VEEMKVING-GVSQTKEVMVPMPLSERNPVLLFMGGGMGAGKSTVLKDILKESFWLGAAS 242

Query: 244 NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIM 303
            AVVVEADAFKE DVIY+AL+S+GHHDDMLQTAELVHQSSTDAASSLLV ALN+GRDVIM
Sbjct: 243 KAVVVEADAFKENDVIYKALNSRGHHDDMLQTAELVHQSSTDAASSLLVAALNKGRDVIM 302

Query: 304 DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 363
           DGTLSW PFVEQTIAMARNVHK +YRMGVGYKV  DGT+ ENYWEQV EGEE +QQ+EN 
Sbjct: 303 DGTLSWEPFVEQTIAMARNVHKHKYRMGVGYKVAADGTINENYWEQVNEGEE-HQQEENS 361

Query: 364 --QVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE 421
             ++ S+KPYRIELVGVVCD YLAV+RGIRRAIM  RAVRVNSQL+SHKRFANAF  YC+
Sbjct: 362 TGELHSQKPYRIELVGVVCDGYLAVIRGIRRAIMTGRAVRVNSQLQSHKRFANAFPKYCK 421

Query: 422 LVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPN 481
           LVD+ARLYCT+AVGGPP+LI WKDGD NLL D   IK L  V   N +ADS+ EL+ EP+
Sbjct: 422 LVDSARLYCTDAVGGPPKLIGWKDGDHNLLEDPVGIKSLKNVAGFNNEADSICELYKEPS 481

Query: 482 PIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIE 514
           P  EPGSVW D VL PSR  +Q ELR SI+ IE
Sbjct: 482 PAMEPGSVWKDFVLSPSRPSVQKELRESIQIIE 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737168|emb|CBI26369.3| unnamed protein product [Vitis vinifera]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/510 (71%), Positives = 423/510 (82%), Gaps = 6/510 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S +G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 26  HGKVILTLLLASS-LGFMVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 83

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC+ NIYEYFS   + +SLY+KLVEEF+RCIL
Sbjct: 84  VARQMGFPDPDECPRFCKLAYDYLKKSKGCDQNIYEYFSSLTDAKSLYMKLVEEFERCIL 143

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHWS AS MI+QVLSVES E+KTK+KD +MAATRKQRFEKVT+DLK+ RVF TL+E
Sbjct: 144 SYFAFHWSQASFMINQVLSVESDEQKTKIKDLVMAATRKQRFEKVTRDLKVTRVFHTLLE 203

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGG GAGKSTVLK+IMK++FWSGA  N 
Sbjct: 204 EMKAIGVAPSSGCTEVMMPVALSERSPVLLLMGGGAGAGKSTVLKEIMKDAFWSGAEANC 263

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDV+YRALSS  HH DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 264 VVVEADAFKETDVVYRALSS--HHHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 321

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 322 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 381

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDN 425
            +RKPYRIELVGVVCD +LAVVRGIRRAI  +RAVRVN Q+KSHKRFA+ F++YC+LVDN
Sbjct: 382 -ARKPYRIELVGVVCDPFLAVVRGIRRAIETRRAVRVNEQVKSHKRFASNFQSYCQLVDN 440

Query: 426 ARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFE 485
            RLYC+NA+G PP LIAWK+G + LLVD + IKCLT + + N DA+++YEL+ +PN + E
Sbjct: 441 VRLYCSNAMGRPPALIAWKEGGNKLLVDPEAIKCLTVISTSNEDAENIYELYKQPNLVHE 500

Query: 486 PGSVWNDIVLCPSRAGLQLELRTSIKKIEN 515
            GSVW DIVL PSR  LQLELRTSI+KIEN
Sbjct: 501 EGSVWKDIVLSPSRVSLQLELRTSIQKIEN 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441017|ref|XP_003590786.1| hypothetical protein MTR_1g075250 [Medicago truncatula] gi|355479834|gb|AES61037.1| hypothetical protein MTR_1g075250 [Medicago truncatula]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/515 (67%), Positives = 409/515 (79%), Gaps = 17/515 (3%)

Query: 1   MHLDSGHGKAIISHIAAASFVGAFA-AAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGN 59
           M  D   GKAI     AAS  G  A A ASHYRRQ  K  + +Q I P +D+ +SGR+  
Sbjct: 1   MEQDGSIGKAI-RFTLAASLAGLTAVATASHYRRQTSKVGV-DQKIIPQVDKKQSGRLEK 58

Query: 60  LERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVE 119
           +E+FS YVARQ+GF+D +E P+LCKLA EYL+KSK C+ +IY Y + E + ESLYVKLV+
Sbjct: 59  IEKFSDYVARQIGFEDASEVPKLCKLAQEYLQKSKACDQSIYAYLANENDSESLYVKLVD 118

Query: 120 EFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRV 179
           EF+RCILSYF FHW  A  ++SQ LS++S  KT+LK+ ++AATRKQRFE+VTK+LK+ RV
Sbjct: 119 EFERCILSYFAFHWKQAPYVVSQALSIDSPPKTRLKEIVLAATRKQRFERVTKNLKVTRV 178

Query: 180 FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS 239
           FSTLVEE+K I    E     VMVP ALSERSPVLL MGGGMGAGKS+VLKDI+KESFWS
Sbjct: 179 FSTLVEELKTINVGKE-----VMVPMALSERSPVLLFMGGGMGAGKSSVLKDILKESFWS 233

Query: 240 GAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGR 299
           GA +  VVVEADAFKE+DVIY+AL ++GH+DDML TAE VH+SSTDAASS+LVTALN+GR
Sbjct: 234 GADSKPVVVEADAFKESDVIYKALHNRGHYDDMLLTAEYVHKSSTDAASSVLVTALNKGR 293

Query: 300 DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQ 359
           DVIMDGTLSW PF EQTIAMARNVHK +YRMGVGY+ +EDGT+ ENYWEQV E EE + Q
Sbjct: 294 DVIMDGTLSWEPFFEQTIAMARNVHKYKYRMGVGYRPDEDGTITENYWEQVNEAEEHHTQ 353

Query: 360 KENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNY 419
                    KPYRIELVGVVCD Y AV+RGIRRAIM +RAVRVNSQLKSHKRFANAF  Y
Sbjct: 354 ---------KPYRIELVGVVCDGYHAVIRGIRRAIMTRRAVRVNSQLKSHKRFANAFPRY 404

Query: 420 CELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSE 479
           C+LVDNARLYCTN VG PP+LI WKDGD+NLLVD ++IK L  V SLN +ADS+YELH E
Sbjct: 405 CKLVDNARLYCTNDVGVPPKLIGWKDGDNNLLVDPEDIKSLNNVTSLNTEADSIYELHKE 464

Query: 480 PNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIE 514
           P+P+ EPGSVWND VL PSR+ +Q ELR SI KIE
Sbjct: 465 PSPVMEPGSVWNDFVLSPSRSSVQKELRESILKIE 499

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477383|ref|XP_002280328.2| PREDICTED: uncharacterized protein LOC100249459 [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/510 (71%), Positives = 423/510 (82%), Gaps = 6/510 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S +G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 26  HGKVILTLLLASS-LGFMVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 83

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC+ NIYEYFS   + +SLY+KLVEEF+RCIL
Sbjct: 84  VARQMGFPDPDECPRFCKLAYDYLKKSKGCDQNIYEYFSSLTDAKSLYMKLVEEFERCIL 143

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHWS AS MI+QVLSVES E+KTK+KD +MAATRKQRFEKVT+DLK+ RVF TL+E
Sbjct: 144 SYFAFHWSQASFMINQVLSVESDEQKTKIKDLVMAATRKQRFEKVTRDLKVTRVFHTLLE 203

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGG GAGKSTVLK+IMK++FWSGA  N 
Sbjct: 204 EMKAIGVAPSSGCTEVMMPVALSERSPVLLLMGGGAGAGKSTVLKEIMKDAFWSGAEANC 263

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDV+YRALSS  HH DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 264 VVVEADAFKETDVVYRALSS--HHHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 321

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 322 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 381

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDN 425
            +RKPYRIELVGVVCD +LAVVRGIRRAI  +RAVRVN Q+KSHKRFA+ F++YC+LVDN
Sbjct: 382 -ARKPYRIELVGVVCDPFLAVVRGIRRAIETRRAVRVNEQVKSHKRFASNFQSYCQLVDN 440

Query: 426 ARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFE 485
            RLYC+NA+G PP LIAWK+G + LLVD + IKCLT + + N DA+++YEL+ +PN + E
Sbjct: 441 VRLYCSNAMGRPPALIAWKEGGNKLLVDPEAIKCLTVISTSNEDAENIYELYKQPNLVHE 500

Query: 486 PGSVWNDIVLCPSRAGLQLELRTSIKKIEN 515
            GSVW DIVL PSR  LQLELRTSI+KIEN
Sbjct: 501 EGSVWKDIVLSPSRVSLQLELRTSIQKIEN 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432931|ref|XP_002280282.1| PREDICTED: uncharacterized protein LOC100264865 [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/510 (72%), Positives = 423/510 (82%), Gaps = 6/510 (1%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           HGK I++ + A+S +G    AA HYRR+K      +   AP L RT SGRVG +ERF+HY
Sbjct: 7   HGKVILTLLLASS-LGLTVKAAIHYRRRKINPE-NDLSFAPRLVRTGSGRVGKIERFAHY 64

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D +ECP+ CKLAY+YLKKSKGC  NIYEYFS   + +SLY+KLVEEF+RC L
Sbjct: 65  VARQMGFPDPDECPRFCKLAYDYLKKSKGCNQNIYEYFSSLPDAKSLYIKLVEEFERCFL 124

Query: 127 SYFTFHWSHASLMISQVLSVES-EKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE 185
           SYF FHW+ AS MI+QVLSVES E+KTKLKDF+MAATRKQRFEKVTKDLK+KRVF TL+E
Sbjct: 125 SYFAFHWTQASFMINQVLSVESDEQKTKLKDFVMAATRKQRFEKVTKDLKVKRVFHTLLE 184

Query: 186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           EMKAI     S CT+VM+P ALSERSPVLLLMGGGMGAGKSTVLK+IMK++FWSGA  N 
Sbjct: 185 EMKAIGVARSSGCTEVMMPVALSERSPVLLLMGGGMGAGKSTVLKEIMKDAFWSGAEANC 244

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           VVVEADAFKETDVIYRALSS  H  DMLQTAELVHQSST+AASSLLV ALNEGRDV+MDG
Sbjct: 245 VVVEADAFKETDVIYRALSS--HRHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDG 302

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSW PFV+QTIAMARNVHK RYRMGVGY V EDGTV ENYWE+V   EE+ QQKEN QV
Sbjct: 303 TLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQV 362

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDN 425
            +RKPYRIELVGVVCD +LAVVRGIRRAI  +RAVRVN Q+KSHKRFA+ F++YC+LVDN
Sbjct: 363 -ARKPYRIELVGVVCDPFLAVVRGIRRAIETRRAVRVNEQVKSHKRFASNFQSYCQLVDN 421

Query: 426 ARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFE 485
            RLYC+NA+G PP LIAWK+G + LLVD + IKCLT + + N DA+++YEL+ +PN + E
Sbjct: 422 VRLYCSNAMGRPPALIAWKEGGNKLLVDPEAIKCLTVISTSNEDAENIYELYKQPNLVHE 481

Query: 486 PGSVWNDIVLCPSRAGLQLELRTSIKKIEN 515
            GSVW DIVL PSR  LQLELRTSI+KIEN
Sbjct: 482 EGSVWKDIVLSPSRVSLQLELRTSIQKIEN 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559959|ref|XP_002520998.1| conserved hypothetical protein [Ricinus communis] gi|223539835|gb|EEF41415.1| conserved hypothetical protein [Ricinus communis]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/510 (66%), Positives = 400/510 (78%), Gaps = 12/510 (2%)

Query: 7   HGKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHY 66
           + K   + I  AS +G F AAA HYR ++ K    N  I P L +   G+   LERFSHY
Sbjct: 6   NSKPTFTQIFIASSIGLFVAAAVHYRLRQRK----NWKIIPRLKQKAGGKTEKLERFSHY 61

Query: 67  VARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCIL 126
           VARQMGF D  ECP LCKLA EY++KS+ CE++IY +F+ E E +SL+VKL+EEF+RCIL
Sbjct: 62  VARQMGFKDRRECPHLCKLAAEYIRKSESCEEDIYAFFADELEADSLFVKLLEEFERCIL 121

Query: 127 SYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEE 186
           SYF FHWSHA L++ QVLS ++E K K K  +MAATR+QRFE+VTK+LK+ RVF+TLVEE
Sbjct: 122 SYFAFHWSHADLILHQVLSADAEPKRKFKHIVMAATREQRFERVTKNLKVARVFNTLVEE 181

Query: 187 MKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244
           MKA  +    +S CT+VM P A S+RSPVLL MGGGMGAGKSTVLKDI+KE FW+GAA N
Sbjct: 182 MKAMGLASNDDSQCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGN 241

Query: 245 AVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 304
           AV++EADAFKE+DVIYRALSS+GH D M+QTAELVHQSST+AASSLLVTALNEGRDVIMD
Sbjct: 242 AVIIEADAFKESDVIYRALSSRGHAD-MIQTAELVHQSSTNAASSLLVTALNEGRDVIMD 300

Query: 305 GTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 364
           GTLSW PFV QTI MARNVH+ RYRMG+GYK    GT+ ENYWEQ+   EE+    + R+
Sbjct: 301 GTLSWAPFVVQTITMARNVHRRRYRMGIGYKEESGGTITENYWEQM---EEEQPLLDGRK 357

Query: 365 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVD 424
              RKPYRIELVGVVCDAYLAV RGIRRAIM +RAVRVNSQLKSHKRFANAF  YC+LVD
Sbjct: 358 --KRKPYRIELVGVVCDAYLAVTRGIRRAIMCRRAVRVNSQLKSHKRFANAFLTYCQLVD 415

Query: 425 NARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIF 484
           NARLYCTNA+ G P+LI WK+ D  LLVD DEI CL RVGSLN  ADS+YEL+  PNP  
Sbjct: 416 NARLYCTNALEGAPKLIGWKERDKTLLVDPDEIDCLKRVGSLNEAADSIYELYKSPNPAC 475

Query: 485 EPGSVWNDIVLCPSRAGLQLELRTSIKKIE 514
             GS+WNDIVL PSR  +Q EL+  I+K+E
Sbjct: 476 AVGSIWNDIVLSPSRLNIQKELKYCIQKVE 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432937|ref|XP_002284322.1| PREDICTED: uncharacterized protein LOC100240916 [Vitis vinifera] gi|297737169|emb|CBI26370.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/517 (72%), Positives = 425/517 (82%), Gaps = 7/517 (1%)

Query: 2   HLDSGHGKAIISHIAAASFVGAFAA--AASHYRRQKYKYHMGNQDIAPLLDRTESGRVGN 59
           H   GHGK  ++     +    F A  AA+ YRR +      +  IAP L+RTESG    
Sbjct: 3   HPAEGHGK--VNLTLLLATTLGFMAPMAATLYRRCRKNKPENDPSIAPGLERTESGYAAK 60

Query: 60  LERFSHYVARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVE 119
           LE+FSHYVARQMGF D +ECPQLC LAY+YLKKSKGC++N+YEY S + + +SLY+KLVE
Sbjct: 61  LEKFSHYVARQMGFADPDECPQLCNLAYDYLKKSKGCDENMYEYISSQPDADSLYIKLVE 120

Query: 120 EFDRCILSYFTFHWSHASLMISQVLSVESEK-KTKLKDFIMAATRKQRFEKVTKDLKMKR 178
           E DRC LSYF FHW+ ASLMI+QVLSVES+K KTKLK+F+MAATRKQRFEKVTKDLK+ R
Sbjct: 121 ELDRCTLSYFGFHWTQASLMINQVLSVESDKQKTKLKNFVMAATRKQRFEKVTKDLKVTR 180

Query: 179 VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238
           VF+TLVEEMKAI       CT+VM+P ALS+RSPVLLLMGGGMGAGKSTVL DIMKE+FW
Sbjct: 181 VFNTLVEEMKAIGVAPSGGCTEVMMPVALSKRSPVLLLMGGGMGAGKSTVLNDIMKEAFW 240

Query: 239 SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEG 298
           S AA NAVVVEADAFKETDVIYRALSS  HH DMLQTAELVHQSSTDAASSLLVTALNEG
Sbjct: 241 SEAAANAVVVEADAFKETDVIYRALSS--HHHDMLQTAELVHQSSTDAASSLLVTALNEG 298

Query: 299 RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ 358
           RDVIMDGTLSW PFV+QTIAMARNVHK RYRMGVGYKV EDGTV ENYWEQ+   EE+ +
Sbjct: 299 RDVIMDGTLSWEPFVQQTIAMARNVHKCRYRMGVGYKVAEDGTVTENYWEQIPPEEEEEE 358

Query: 359 QKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRN 418
           Q+       RKPYRIELVGV+CD YLAVVRGIRRAIM KRAVRVNSQLKSHKRFA+AF+ 
Sbjct: 359 QQNENGHVERKPYRIELVGVICDPYLAVVRGIRRAIMTKRAVRVNSQLKSHKRFASAFQR 418

Query: 419 YCELVDNARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHS 478
           YC+LVDNARLYCTNA+GGPP LI WKDGD+ LLVD ++IKCLT V +L  DAD+VYEL++
Sbjct: 419 YCQLVDNARLYCTNAMGGPPSLIGWKDGDNKLLVDPEQIKCLTVVSTLKDDADNVYELYT 478

Query: 479 EPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKKIEN 515
           EP  ++E GSVW DIVL PSRA L L+LRTSI+KIEN
Sbjct: 479 EPKILYEQGSVWKDIVLTPSRASLHLDLRTSIQKIEN 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518501|ref|XP_004166280.1| PREDICTED: uncharacterized protein LOC101223662 [Cucumis sativus]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/512 (66%), Positives = 399/512 (77%), Gaps = 12/512 (2%)

Query: 8   GKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYV 67
            K  +  I  AS +G    AA HYR +K +     Q I P L  +++GRV  LE F HYV
Sbjct: 42  SKPSLGQIVWASSIGLIIVAAMHYRIRKLRV----QRIIPRLKVSDTGRVEKLESFPHYV 97

Query: 68  ARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILS 127
           ARQMGF D +ECP LCKLA EY+ KS+ CED+IY +FS E   +SL+VKLVEEF+RCILS
Sbjct: 98  ARQMGFKDIHECPHLCKLASEYIAKSEECEDDIYSFFSSELHADSLFVKLVEEFERCILS 157

Query: 128 YFTFHWSHASLMISQVLSVE-SEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEE 186
           YF FHW+   +MISQ+LS +  E K KL+  +MAATR+QRFE+VTK+LK+ RVF+TLVEE
Sbjct: 158 YFAFHWNQTDIMISQILSSDHQEPKKKLRSIVMAATREQRFERVTKNLKVARVFTTLVEE 217

Query: 187 MKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244
           MKA  +    +S CT+VMVP A ++RSP+LL MGGGMGAGKSTVLKDI+KE FW GA  N
Sbjct: 218 MKAMGLASTDDSQCTEVMVPMAHADRSPMLLFMGGGMGAGKSTVLKDILKEPFWVGAGPN 277

Query: 245 AVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 304
           AVV+EADAFKE+DVIYRAL+S GHH DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD
Sbjct: 278 AVVIEADAFKESDVIYRALNSTGHHHDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMD 337

Query: 305 GTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 364
           GTLSWVPFV QTI MARNVH+ RYRMG GYKV +DGTV ENYWE++++ E D Q    R 
Sbjct: 338 GTLSWVPFVVQTITMARNVHRRRYRMGAGYKVGDDGTVTENYWERIEDQEPD-QVGGKR- 395

Query: 365 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVD 424
              RKPYRIELVGVVCDAYLAV+RGIRRA+M +RAVRV SQLKSHKRFANAF  YC+ VD
Sbjct: 396 ---RKPYRIELVGVVCDAYLAVIRGIRRALMCRRAVRVKSQLKSHKRFANAFLTYCQYVD 452

Query: 425 NARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIF 484
           NARLYCTNA+ GPP+ I WKD D  LLVD +EIKCL  VGSLN DA S++EL+ +P+P  
Sbjct: 453 NARLYCTNALEGPPKFIGWKDKDKTLLVDPEEIKCLRTVGSLNEDASSIHELYKKPSPAC 512

Query: 485 EPGSVWNDIVLCPSRAGLQLELRTSIKKIENY 516
           E GSVW DIVL PSR  +Q EL+  IKK+E +
Sbjct: 513 ESGSVWKDIVLSPSRLTIQQELKYCIKKVEKH 544

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437257|ref|XP_002275654.1| PREDICTED: uncharacterized protein LOC100249325 [Vitis vinifera]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/511 (67%), Positives = 403/511 (78%), Gaps = 17/511 (3%)

Query: 8   GKAIISHIAAASFVGAFAAAASHYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYV 67
           G +  + I  AS +G   AA  H+R ++         I P +  T++G+V  LERFSHYV
Sbjct: 7   GNSTFTQILIASVIGFIIAALMHFRFRRC------LKIVPHMKITDTGQV-KLERFSHYV 59

Query: 68  ARQMGFDDTNECPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILS 127
           ARQ+GF D  ECPQLCKLA +Y +KS+GCE+NIY +F  E + +SL++KLVEEF+RCI+S
Sbjct: 60  ARQIGFADRRECPQLCKLASDYARKSEGCEENIYTFFDTELDGDSLFIKLVEEFERCIIS 119

Query: 128 YFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEM 187
           YF FHWSHA LMISQ+L  E  KK KL+  +MAATR+QRFE+VTK+LK+ RVF+TLVEEM
Sbjct: 120 YFAFHWSHADLMISQILGTEDPKK-KLRSLVMAATRQQRFERVTKNLKVARVFNTLVEEM 178

Query: 188 KAIRREG--ESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245
           K IR     +S CTDVMVP A S RSPVLL MGGGMGAGKSTVLKDI+ E  WSGAA NA
Sbjct: 179 KVIRLAANDDSECTDVMVPVAHSNRSPVLLFMGGGMGAGKSTVLKDILAEPLWSGAAGNA 238

Query: 246 VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305
           V++EADAFKE+DVIY+ALSS+GHHD MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG
Sbjct: 239 VIIEADAFKESDVIYKALSSRGHHD-MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDG 297

Query: 306 TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
           TLSWVPFV QTI MARNVH+ RYRMGVGY+V EDGTV ENYWEQV+E +E    K+    
Sbjct: 298 TLSWVPFVVQTITMARNVHRRRYRMGVGYRVAEDGTVTENYWEQVEEEQEKVGGKK---- 353

Query: 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDN 425
             RKPYRIELVGVVCDAYLAV+RGIRRAI+ +RAVRV SQLKSHKRFANAF  YC+LVDN
Sbjct: 354 --RKPYRIELVGVVCDAYLAVIRGIRRAILTRRAVRVKSQLKSHKRFANAFTTYCQLVDN 411

Query: 426 ARLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFE 485
           ARLYCTNA+ GPP+LI WKD + NLLVD DEI CL  V  LN +A+S+ EL+  PNP  +
Sbjct: 412 ARLYCTNALEGPPKLIGWKDRERNLLVDPDEISCLKAVAMLNDEANSISELYKCPNPASQ 471

Query: 486 PGSVWNDIVLCPSRAGLQLELRTSIKKIENY 516
            GSVW DIVL PSR  +Q EL+ SIK+IE Y
Sbjct: 472 AGSVWKDIVLSPSRMNIQQELKYSIKRIEQY 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
TAIR|locus:2018304	534	AT1G04280 [Arabidopsis thalian	0.926	0.895	0.687	6.1e-174
TAIR|locus:2054497	552	AT2G30630 [Arabidopsis thalian	0.922	0.862	0.619	5.3e-159

TAIR|locus:2018304 AT1G04280 [Arabidopsis thaliana (taxid:3702)]

 Score = 1690 (600.0 bits), Expect = 6.1e-174, P = 6.1e-174
 Identities = 336/489 (68%), Positives = 393/489 (80%)

Query:    32 RRQKYKY--HMGNQD--IAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAY 87
             RR+K      MG +D  IAPL++R +SGR  NLERFSHYVARQ+GF+D NE PQLCKLA 
Sbjct:    45 RRRKLDQGASMGYKDVKIAPLIERKDSGRRSNLERFSHYVARQLGFEDPNEYPQLCKLAN 104

Query:    88 EYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVE 147
              YL K+KG ++N+ EY   EAE +SLYV L+EEFDRCIL+YF+F+W+ +S +ISQ LS E
Sbjct:   105 GYLLKTKGYDENVDEYLENEAERDSLYVHLLEEFDRCILTYFSFNWTQSSNLISQALSDE 164

Query:   148 SEKKT-KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRR-EGESHCTDVMVPA 205
             S++K  KLKDF+MAATRKQRFE+VTKDLK+KRV STLVEEM+ I     E HCT+VM P 
Sbjct:   165 SDQKVPKLKDFVMAATRKQRFERVTKDLKVKRVISTLVEEMRVIGSGSSEPHCTEVMSPV 224

Query:   206 ALSERSPVXXXXXXXXXXXKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265
             A ++RSPV           KSTVLKDI  ESFWS A  +AVV+EADAFKETDVIYRALSS
Sbjct:   225 AHNKRSPVLLLMGGGMGAGKSTVLKDIFLESFWSEAQADAVVIEADAFKETDVIYRALSS 284

Query:   266 KGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHK 325
             +GHHDDMLQTAELVHQSSTDAASSLLVTALN+GRDVIMDGTLSW PFVEQ I MARNVHK
Sbjct:   285 RGHHDDMLQTAELVHQSSTDAASSLLVTALNDGRDVIMDGTLSWEPFVEQMIEMARNVHK 344

Query:   326 SRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLA 385
              +YRMG GYKV+E+GT+ E YWE     EE+ + KEN +  + KPYRIELVGVVCDAYLA
Sbjct:   345 QKYRMGEGYKVSEEGTITEKYWE-----EEEEETKENGKQQNLKPYRIELVGVVCDAYLA 399

Query:   386 VVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKD 445
             V RGIRRA+M+KRAVRV  QL SHKRFANAF  YCELVDNARLYCTNAVGGPPRLIAWKD
Sbjct:   400 VARGIRRALMVKRAVRVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKD 459

Query:   446 GDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLE 505
             G+S LLVD ++I CL RV SLN DA+S+YEL+ +P+ + +PGSVWND+VL PSR  +Q E
Sbjct:   460 GNSKLLVDPEDIDCLKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKE 519

Query:   506 LRTSIKKIE 514
             L  +I++IE
Sbjct:   520 LSDAIRRIE 528

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2054497 AT2G30630 [Arabidopsis thaliana (taxid:3702)]

 Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
 Identities = 316/510 (61%), Positives = 378/510 (74%)

Query:    30 HYRRQKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQLCKLAYEY 89
             H+R +K ++   +++I  L    +      LERFSHYV RQMGF D  ECP LCKLA EY
Sbjct:    45 HFRLRKLRH---SKNIPRLRSSQKHKGHEKLERFSHYVVRQMGFKDRRECPHLCKLANEY 101

Query:    90 LKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQV------ 143
             ++KS  CE++IY +FS+E   +SL++KLVEEF+RCILSYF +HWSHA LMISQV      
Sbjct:   102 IRKSGSCEEDIYSFFSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQVTNKLSL 161

Query:   144 ---------------LSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMK 188
                            LS + E K KLK  +MAATR+QRFE+VTK+LK+ RVF+TLVEEMK
Sbjct:   162 SLLCYITNRPKTFQILSADVEPKKKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMK 221

Query:   189 A--IRREGESHCTDVMVPAALSERSPVXXXXXXXXXXXKSTVLKDIMKESFWSGAATNAV 246
             A  I    +S CT+VM P A  +RSPV           KSTVLKDI+KE FW+GA  +AV
Sbjct:   222 AMGIASVDDSECTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGA--DAV 279

Query:   247 VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 306
             V+EADAFKE+DVIYRALS++GH D M++TAE VHQSSTDAASSLLVTALNEGRDVIMDGT
Sbjct:   280 VIEADAFKESDVIYRALSARGHVD-MIKTAEFVHQSSTDAASSLLVTALNEGRDVIMDGT 338

Query:   307 LSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 366
             LSWVPFV QTI MARNVH+ RYRMG GYKV E+G VIENYWE++  GE    Q++ R+  
Sbjct:   339 LSWVPFVVQTITMARNVHRHRYRMGAGYKVGENGDVIENYWERI--GERQQLQEDGRE-- 394

Query:   367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNA 426
              RKPYRIELVGVVCDAYLAV+RGIRRAIM +RAVRV SQL+SHKRFANAF  YC LVDNA
Sbjct:   395 -RKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFANAFLTYCNLVDNA 453

Query:   427 RLYCTNAVGGPPRLIAWKDGDSNLLVDSDEIKCLTRVGSLNADADSVYELHSEPNPIFEP 486
             RLYCTNA+ G P+LI WK+ +  LLVD +EI CL  VG LN +ADS+YEL+  PNP  E 
Sbjct:   454 RLYCTNALEGSPKLIGWKEKEKTLLVDPEEIDCLKNVGRLNENADSIYELYRNPNPACEA 513

Query:   487 GSVWNDIVLCPSRAGLQLELRTSIKKIENY 516
             GS+W DIVL PSR  +Q EL+ SI+K+E +
Sbjct:   514 GSIWKDIVLSPSRFNIQQELKYSIQKVERF 543


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      516       491   0.00082  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  302 KB (2156 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.75u 0.13s 40.88t   Elapsed:  00:00:02
  Total cpu time:  40.75u 0.13s 40.88t   Elapsed:  00:00:02
  Start:  Tue May 21 03:04:49 2013   End:  Tue May 21 03:04:51 2013

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	516
pfam06414	191	pfam06414, Zeta_toxin, Zeta toxin	1e-12

>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264
               +  PV +L+GG  GAGK+ + + +++E        N V ++ D  +     Y  L 
Sbjct: 5   DKPPQERPVAVLLGGQPGAGKTELARALLEEL----GGGNVVRIDPDELRTYHPDYDELQ 60

Query: 265 SKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
                D     +EL    ++     L+  A+  G ++I++GTL       +     +   
Sbjct: 61  KADPKD----ASELTQPDASRWVEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKA-- 114

Query: 325 KSRYRMGVGYKVN 337
                   GY+V 
Sbjct: 115 -------AGYEVE 120

This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	516
COG2187	337	Uncharacterized protein conserved in bacteria [Fun	99.97
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.94
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.92
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.67
COG0645	170	Predicted kinase [General function prediction only	99.65
PHA02530	300	pseT polynucleotide kinase; Provisional	99.64
PRK06762	166	hypothetical protein; Provisional	99.53
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.49
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.45
COG4639	168	Predicted kinase [General function prediction only	99.42
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.4
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.36
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.34
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.27
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.22
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.18
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.18
PRK14527	191	adenylate kinase; Provisional	99.15
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.14
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.14
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.11
PRK14532	188	adenylate kinase; Provisional	99.08
PRK06696	223	uridine kinase; Validated	99.07
PLN02200	234	adenylate kinase family protein	99.04
PRK14531	183	adenylate kinase; Provisional	99.02
PRK12338	319	hypothetical protein; Provisional	99.02
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.01
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.99
PRK09825	176	idnK D-gluconate kinase; Provisional	98.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.98
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.95
PRK03846	198	adenylylsulfate kinase; Provisional	98.94
PRK11545	163	gntK gluconate kinase 1; Provisional	98.93
PRK00889	175	adenylylsulfate kinase; Provisional	98.92
PRK06761	282	hypothetical protein; Provisional	98.92
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.91
PRK05541	176	adenylylsulfate kinase; Provisional	98.89
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.88
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.88
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.85
PRK01184	184	hypothetical protein; Provisional	98.83
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.81
PRK00279	215	adk adenylate kinase; Reviewed	98.8
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.8
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.8
PRK06547	172	hypothetical protein; Provisional	98.8
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.78
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.72
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.68
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.67
PRK14530	215	adenylate kinase; Provisional	98.67
PRK07261	171	topology modulation protein; Provisional	98.67
PRK00131	175	aroK shikimate kinase; Reviewed	98.66
PRK13946	184	shikimate kinase; Provisional	98.66
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.66
PRK04182	180	cytidylate kinase; Provisional	98.65
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.61
PRK13947	171	shikimate kinase; Provisional	98.6
PRK06217	183	hypothetical protein; Validated	98.59
PRK14528	186	adenylate kinase; Provisional	98.58
PRK02496	184	adk adenylate kinase; Provisional	98.57
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.57
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.56
PTZ00301	210	uridine kinase; Provisional	98.56
PRK15453	290	phosphoribulokinase; Provisional	98.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.55
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.55
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.54
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.54
PRK04040	188	adenylate kinase; Provisional	98.53
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.52
PRK13948	182	shikimate kinase; Provisional	98.51
PRK03731	171	aroL shikimate kinase II; Reviewed	98.49
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.49
PRK03839	180	putative kinase; Provisional	98.49
PRK08233	182	hypothetical protein; Provisional	98.48
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.48
PRK14737	186	gmk guanylate kinase; Provisional	98.48
PRK13973	213	thymidylate kinase; Provisional	98.47
PLN02348	395	phosphoribulokinase	98.47
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.47
PRK05480	209	uridine/cytidine kinase; Provisional	98.46
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.46
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.45
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.45
PRK08356	195	hypothetical protein; Provisional	98.44
PRK00698	205	tmk thymidylate kinase; Validated	98.43
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.43
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.43
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.43
PRK13808	333	adenylate kinase; Provisional	98.42
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.41
PRK08118	167	topology modulation protein; Reviewed	98.38
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.38
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.37
PRK00625	173	shikimate kinase; Provisional	98.36
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.35
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.29
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.28
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.28
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.27
PLN02674	244	adenylate kinase	98.27
PTZ00451	244	dephospho-CoA kinase; Provisional	98.26
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.25
PRK05057	172	aroK shikimate kinase I; Reviewed	98.25
PRK07667	193	uridine kinase; Provisional	98.24
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.24
PRK00300	205	gmk guanylate kinase; Provisional	98.23
PRK07429	327	phosphoribulokinase; Provisional	98.2
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.2
PRK13949	169	shikimate kinase; Provisional	98.2
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.19
PLN02422	232	dephospho-CoA kinase	98.18
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.18
PRK14738	206	gmk guanylate kinase; Provisional	98.17
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.16
PLN02318	656	phosphoribulokinase/uridine kinase	98.15
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.15
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.14
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.11
PTZ00088	229	adenylate kinase 1; Provisional	98.1
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.09
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.08
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.07
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.07
PRK14526	211	adenylate kinase; Provisional	98.07
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.07
PRK00023	225	cmk cytidylate kinase; Provisional	98.05
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.01
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.01
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.0
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.99
PRK05439	311	pantothenate kinase; Provisional	97.98
PRK13975	196	thymidylate kinase; Provisional	97.98
PRK13974	212	thymidylate kinase; Provisional	97.97
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.92
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.91
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.91
PLN02459	261	probable adenylate kinase	97.88
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.84
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.81
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.81
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.79
PLN02924	220	thymidylate kinase	97.79
PRK14529	223	adenylate kinase; Provisional	97.78
PRK07933	213	thymidylate kinase; Validated	97.76
PLN02772	398	guanylate kinase	97.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.67
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.66
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.65
PLN02842	505	nucleotide kinase	97.58
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.55
PLN02748	468	tRNA dimethylallyltransferase	97.5
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.49
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.47
PLN02199	303	shikimate kinase	97.45
PLN02840	421	tRNA dimethylallyltransferase	97.4
PLN02165	334	adenylate isopentenyltransferase	97.37
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.35
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.35
PRK13976	209	thymidylate kinase; Provisional	97.34
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.31
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.3
PRK10416	318	signal recognition particle-docking protein FtsY;	97.25
PF00004	132	AAA: ATPase family associated with various cellula	97.24
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.23
smart00382	148	AAA ATPases associated with a variety of cellular	97.19
PRK14974	336	cell division protein FtsY; Provisional	97.18
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.18
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.14
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.13
PRK10867	433	signal recognition particle protein; Provisional	97.12
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.12
TIGR00959	428	ffh signal recognition particle protein. This mode	97.12
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.1
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.06
KOG3062	281	consensus RNA polymerase II elongator associated p	96.98
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.93
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.85
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.84
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.84
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.8
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.76
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.76
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.74
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.68
COG3709	192	Uncharacterized component of phosphonate metabolis	96.66
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.57
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.57
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.57
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.56
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.55
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.54
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.53
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.51
PRK09087	226	hypothetical protein; Validated	96.49
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.48
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	96.48
PRK04195	482	replication factor C large subunit; Provisional	96.46
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.46
PLN02796	347	D-glycerate 3-kinase	96.44
PLN03046	460	D-glycerate 3-kinase; Provisional	96.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.41
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.38
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.35
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.32
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.32
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.3
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	96.29
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.28
COG1660	286	Predicted P-loop-containing kinase [General functi	96.26
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.26
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.24
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.23
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.22
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.21
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.2
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.2
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.2
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.18
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.18
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.16
PRK05642	234	DNA replication initiation factor; Validated	96.16
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.16
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.15
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.15
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.15
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.14
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.14
PRK13768	253	GTPase; Provisional	96.13
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.13
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.12
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.1
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.1
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.1
PHA02544	316	44 clamp loader, small subunit; Provisional	96.09
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.09
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.08
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.07
PF05729	166	NACHT: NACHT domain	96.07
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.07
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.07
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.06
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.06
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.06
PRK08084	235	DNA replication initiation factor; Provisional	96.05
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.04
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.04
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.04
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.04
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.03
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.03
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.02
PHA03132	580	thymidine kinase; Provisional	96.02
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.02
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.01
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.99
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.99
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	95.99
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.98
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.98
PF13245	76	AAA_19: Part of AAA domain	95.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.97
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.96
cd03246	173	ABCC_Protease_Secretion This family represents the	95.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.93
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.93
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	95.93
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.93
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.92
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.91
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.91
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.91
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.91
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.91
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.9
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.9
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.9
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.89
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	95.88
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	95.88
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.88
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.87
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.86
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	95.85
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	95.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.85
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	95.84
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.84
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.84
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.82
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.81
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.81
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.8
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.8
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.8
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.79
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.78
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.78
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.78
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.77
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.77
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	95.76
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.76
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.76
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.76
PRK10908	222	cell division protein FtsE; Provisional	95.76
PF13173	128	AAA_14: AAA domain	95.75
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.75
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	95.74
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.74
COG1855	604	ATPase (PilT family) [General function prediction	95.73
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.73
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.72
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.71
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.71
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.7
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.7
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.69
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.68
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	95.68
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.67
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.67
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	95.66
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.66
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.66
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	95.64
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.64
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.64
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.64
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.63
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.62
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.62
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	95.61
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.61
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.6
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	95.6
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.59
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.59
PRK04296	190	thymidine kinase; Provisional	95.58
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.58
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.58
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	95.57
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.56
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.56
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.56
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.56
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.56
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.55
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.54
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.54
KOG0780	483	consensus Signal recognition particle, subunit Srp	95.54
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.53
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	95.53
PHA00729	226	NTP-binding motif containing protein	95.53
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.53
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.52
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.52
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.52
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.5
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.5
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	95.49
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.48
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.48
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.48
PRK12402	337	replication factor C small subunit 2; Reviewed	95.48
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.48
PLN03025	319	replication factor C subunit; Provisional	95.47
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.47
PTZ00202	550	tuzin; Provisional	95.47
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	95.46
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.46
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.46
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.45
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.45
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	95.44
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.43
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.43
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.43
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.43
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.42
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.41
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.4
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.4
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	95.4
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.4
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.39
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.38
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.38
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	95.37
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.36
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.36
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.36
CHL00195	489	ycf46 Ycf46; Provisional	95.35
PRK10646	153	ADP-binding protein; Provisional	95.35
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.35
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.35
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.34
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.34
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.34
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.34
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	95.33
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.32
COG4240	300	Predicted kinase [General function prediction only	95.32
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.32
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.31
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.29
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	95.29
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.29
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.28
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.28
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.28
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.26
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	95.26
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	95.26
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.26
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	95.25
cd02034	116	CooC The accessory protein CooC, which contains a	95.25
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.25
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.24
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.23
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.22
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.21
COG3911	183	Predicted ATPase [General function prediction only	95.21
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.2
cd03299	235	ABC_ModC_like Archeal protein closely related to M	95.2
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.19
COG4559	259	ABC-type hemin transport system, ATPase component	95.19
PF13479	213	AAA_24: AAA domain	95.19
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	95.19
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	95.19
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.19
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.18
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.18
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.17
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.15
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.15
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	95.15
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.15
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.15
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.15
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.14
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.13
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	95.13
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.11
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	95.11
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.1
PRK13546	264	teichoic acids export protein ATP-binding subunit;	95.1
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.09
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.09
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	95.09
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	95.09
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	95.08
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	95.08
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.07
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.07
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	95.07
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.07
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.06
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	95.06
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	95.06
CHL00181	287	cbbX CbbX; Provisional	95.06
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.05
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	95.04
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	95.02
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.02
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.02
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	94.99
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	94.98
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	94.97
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	94.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	94.94
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	94.94
cd03114	148	ArgK-like The function of this protein family is u	94.94
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	94.94
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.94
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	94.93
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	94.93
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	94.93
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.93
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	94.93
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.92
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.92
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.92
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	94.92

>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.97  E-value=5.8e-33  Score=276.71  Aligned_cols=150  Identities=10%  Similarity=0.170  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHHhhh-ccCCCCCCChhhHHHHHHhhHHhhhhhchhhhhhcccccccchHH-HHHHHHHHHHhc------
Q 010176           22 GAFAAAASHYRRQKY-KYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQ-LCKLAYEYLKKS------   93 (516)
Q Consensus        22 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~i~~~~~~n~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~R------   93 (516)
                      ..+|..-+.|-++.. +.-+..+|.++.+..++.+||.+++++.+.+.+..+++.++.+++ +++.+.++|++|      
T Consensus       130 ~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~t~~f~e~~~~lf~~R~~~g~I  209 (337)
T COG2187         130 DALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFDRRIAEGFI  209 (337)
T ss_pred             HHHHHHHHHHhhcCCCCccccccCCHHHHHhHHHhhHHHHhhhcCcccCHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCc
Confidence            344444455544432 223668999999999999999999999999999999999999999 999999999999      


Q ss_pred             cCCccccc----ccccCCccccccccccchhhhhhh--hcccccccccccchhcccccccccCCchhHHHHHHHHHhh--
Q 010176           94 KGCEDNIY----EYFSKEAEPESLYVKLVEEFDRCI--LSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQ--  165 (516)
Q Consensus        94 r~cHGDLh----~~~~~~~~~fD~cIEF~~~l~R~i--l~d~AF~~~~~~~~~~l~MDle~~g~~~la~~~l~~yl~~--  165 (516)
                      |+||||||    |+++|+|.+|| ||||||.| |+|  ++|+||          |+||||++|+++||+.|||.|+++  
T Consensus       210 RecHGDLhl~ni~l~dg~~~LFD-CIEFNd~f-r~iDv~~D~AF----------l~MDLe~~gr~dla~~~ln~Yl~~tg  277 (337)
T COG2187         210 RECHGDLHLRNICLWDGEPALFD-CIEFNDPF-RFIDVLYDLAF----------LAMDLEFRGRKDLARRFLNTYLEETG  277 (337)
T ss_pred             eecccchhhcceeeecCcceEEE-EeecCCcc-hHHHHHHHHHH----------HHhhHhhcCChHHHHHHHHHHHHHhC
Confidence            99999999    99999999999 99999999 999  999999          999999999999999999999999  


Q ss_pred             ---h-----HH---HHHHHhHHHHHh-ccc
Q 010176          166 ---R-----FE---KVTKDLKMKRVF-STL  183 (516)
Q Consensus       166 ---~-----~~---RA~vRaKV~~~~-~~~  183 (516)
                         +     |+   ||+|||||+++. +++
T Consensus       278 D~~gl~lLpfyla~rA~VRakV~sf~ldd~  307 (337)
T COG2187         278 DWDGLELLPFYLAYRAYVRAKVTSFLLDDP  307 (337)
T ss_pred             CccHHHHhHHHHHHHHHHHHheeEEeccCC
Confidence               2     33   999999999998 443

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.94  E-value=2.9e-26  Score=212.27  Aligned_cols=172  Identities=23%  Similarity=0.232  Sum_probs=139.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|++.+|+|+|||||||+...+...+.     ++.++||+|++.      +++++... ..      . .-.+.+.+..+
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA------~~i~p~~p-~~------~-~i~A~r~ai~~   61 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIA------AQISPDNP-TS------A-AIQAARVAIDR   61 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHh------hhcCCCCc-hH------H-HHHHHHHHHHH
Confidence            589999999999999999988877763     478999666654      44655321 11      1 11234456668


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      +..+++.|.+|++|+||+.+++++.+.                                  .             ++.+|
T Consensus        62 i~~~I~~~~~F~~ETtLS~~s~~~~ik----------------------------------~-------------Ak~~G   94 (187)
T COG4185          62 IARLIDLGRPFIAETTLSGPSILELIK----------------------------------T-------------AKAAG   94 (187)
T ss_pred             HHHHHHcCCCcceEEeeccchHHHHHH----------------------------------H-------------HHhCC
Confidence            999999999999999999998776532                                  1             36789


Q ss_pred             ceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCCCCCCCeeEEEecCCCc
Q 010176          371 YRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSN  449 (516)
Q Consensus       371 y~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~~~~~p~li~~k~~~~~  449 (516)
                      |.|.|.|+. .++|++++|+..|+..|||+||+++++++|.|.++++.+|..+||++.+|||++. . |+|++++.++..
T Consensus        95 f~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~-~-~~lv~e~~~~~i  172 (187)
T COG4185          95 FYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRL-A-PRLVAEFSGGGI  172 (187)
T ss_pred             eEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCC-C-ceEEEEeCCceE
Confidence            999998886 5799999999999999999999999999999999999999999999999997754 3 999999987654


Q ss_pred             e
Q 010176          450 L  450 (516)
Q Consensus       450 ~  450 (516)
                      .
T Consensus       173 ~  173 (187)
T COG4185         173 I  173 (187)
T ss_pred             E
Confidence            3

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.92  E-value=1.8e-24  Score=208.02  Aligned_cols=172  Identities=23%  Similarity=0.330  Sum_probs=124.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      +...|++++++|+|||||||++..+.+.+.    .++.++||+|+|+...+.+.++...    .+...+..++..+..++
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~   82 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA   82 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence            668999999999999999999999999872    2478999999999988776665442    11123455577778888


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ..++..++++|++||+|+||++++....+++.                                              ++
T Consensus        83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~----------------------------------------------~k  116 (199)
T PF06414_consen   83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIRE----------------------------------------------AK  116 (199)
T ss_dssp             HHHHHHHHHCT--EEEE--TTSSHHHHHHHHH----------------------------------------------HH
T ss_pred             HHHHHHHHHcCCCEEEecCCCChhHHHHHHHH----------------------------------------------HH
Confidence            89999999999999999999998766654333                                              25


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhc------CcccchhhhHhHHHHHHHhHHHhhc--cCceEEEEecCC
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMM------KRAVRVNSQLKSHKRFANAFRNYCE--LVDNARLYCTNA  433 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~g------Gr~Vp~~~ql~s~~rf~~~~~~y~~--lvD~~~lydnn~  433 (516)
                      ++||+|+|++|.+|+++++.|+..|+.++      ||.||.+.+..+|..+.+++.....  ++|++.+||++.
T Consensus       117 ~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~~~~~~~~~~~~~~~~d~i~v~d~~g  190 (199)
T PF06414_consen  117 AAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYANLPETLEALENEKLFDRITVYDRDG  190 (199)
T ss_dssp             CTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHHHHHHHHHHHHHCT--SEEEEE-TTS
T ss_pred             cCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            67999999999999999999999999999      9999999999999999999988766  999999999764

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.67  E-value=9.1e-16  Score=138.01  Aligned_cols=138  Identities=23%  Similarity=0.230  Sum_probs=97.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ||+|+|+|||||||+++.|++.+       ++.+|      +.|.++..+.+..... .....+. .......+...+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~-------~~~~i------~~D~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~   65 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL-------GAVVI------SQDEIRRRLAGEDPPS-PSDYIEA-EERAYQILNAAIRK   65 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS-------TEEEE------EHHHHHHHHCCSSSGC-CCCCHHH-HHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC-------CCEEE------eHHHHHHHHccccccc-chhHHHH-HHHHHHHHHHHHHH
Confidence            68999999999999999999888       35899      5555666676642111 1111112 33445555678899


Q ss_pred             HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI  373 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I  373 (516)
                      .+..|.++|+|.|+..++.|+.+.++++.                                              .||.+
T Consensus        66 ~l~~g~~~vvd~~~~~~~~r~~~~~~~~~----------------------------------------------~~~~~   99 (143)
T PF13671_consen   66 ALRNGNSVVVDNTNLSREERARLRELARK----------------------------------------------HGYPV   99 (143)
T ss_dssp             HHHTT-EEEEESS--SHHHHHHHHHHHHH----------------------------------------------CTEEE
T ss_pred             HHHcCCCceeccCcCCHHHHHHHHHHHHH----------------------------------------------cCCeE
Confidence            99999999999999999988887777543                                              36778


Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcc--cchhhhHhHHHHH
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRA--VRVNSQLKSHKRF  412 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~--Vp~~~ql~s~~rf  412 (516)
                      .+|++.++.+++.+|...|...+++.  ++.+...+.++.|
T Consensus       100 ~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~  140 (143)
T PF13671_consen  100 RVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARF  140 (143)
T ss_dssp             EEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhh
Confidence            89999999999999999999877653  5555544444444

...

>COG0645 Predicted kinase [General function prediction only]

Probab=99.65  E-value=1.5e-15  Score=142.77  Aligned_cols=123  Identities=23%  Similarity=0.209  Sum_probs=104.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC---CCCChhhHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~---~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ++|++++|+|||||||+++.|.+.+       ++++|      ++|.+||.|++.   .+.+..+|+++. ...+|..+.
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l-------gA~~l------rsD~irk~L~g~p~~~r~~~g~ys~~~-~~~vy~~l~   66 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL-------GAIRL------RSDVIRKRLFGVPEETRGPAGLYSPAA-TAAVYDELL   66 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc-------CceEE------ehHHHHHHhcCCcccccCCCCCCcHHH-HHHHHHHHH
Confidence            4689999999999999999999998       67999      999999999993   222356777777 777888888


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+..+|..|++||+|+||.++..|+....+|++.                                             
T Consensus        67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~---------------------------------------------  101 (170)
T COG0645          67 GRAELLLSSGHSVVLDATFDRPQERALARALARDV---------------------------------------------  101 (170)
T ss_pred             HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhcc---------------------------------------------
Confidence            89999999999999999999999999988887654                                             


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAI  394 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~  394 (516)
                       |..+.+|-+.+++++...|.+.|.-
T Consensus       102 -gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645         102 -GVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             -CCceEEEEcCCcHHHHHHHHHHhCC
Confidence             2345667778899999999999874

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.64  E-value=7.9e-15  Score=148.69  Aligned_cols=144  Identities=22%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|.+|++.|+|||||||+++.|++.+.      +..+|+.|+++      +.+.+.+......+..+. ...........
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~------~~~~l~~D~~r------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   67 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNP------KAVNVNRDDLR------QSLFGHGEWGEYKFTKEK-EDLVTKAQEAA   67 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCC------CCEEEeccHHH------HHhcCCCcccccccChHH-HHHHHHHHHHH
Confidence            478999999999999999999999882      45899666654      444432110011111111 11223344557


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      +..++..|.+||+|+|+..+.+++.+.++++.                                              .+
T Consensus        68 ~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~----------------------------------------------~~  101 (300)
T PHA02530         68 ALAALKSGKSVIISDTNLNPERRRKWKELAKE----------------------------------------------LG  101 (300)
T ss_pred             HHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----------------------------------------------cC
Confidence            78888999999999999999988887766543                                              24


Q ss_pred             ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176          371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF  416 (516)
Q Consensus       371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~  416 (516)
                      +.+.++++.+|.+++.+|...|   ++|.+|.+.+.++|+++....
T Consensus       102 ~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~  144 (300)
T PHA02530        102 AEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYR  144 (300)
T ss_pred             CeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhc
Confidence            6677889999999999999999   689999999988888877543

>PRK06762 hypothetical protein; Provisional

Probab=99.53  E-value=1.1e-13  Score=128.59  Aligned_cols=133  Identities=15%  Similarity=0.102  Sum_probs=92.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|++|+|+|+|||||||+|+.|++.++     .++++++.      |.+++.+......+. .+.    .    ..+...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~------D~~r~~l~~~~~~~~-~~~----~----~~~~~~   60 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQ------DVVRRDMLRVKDGPG-NLS----I----DLIEQL   60 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecH------HHHHHHhccccCCCC-CcC----H----HHHHHH
Confidence            589999999999999999999999883     26788954      555555543211011 011    1    112235


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      +..++..|.+||+|++|....++..+..++..                                              .+
T Consensus        61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~----------------------------------------------~~   94 (166)
T PRK06762         61 VRYGLGHCEFVILEGILNSDRYGPMLKELIHL----------------------------------------------FR   94 (166)
T ss_pred             HHHHHhCCCEEEEchhhccHhHHHHHHHHHHh----------------------------------------------cC
Confidence            56678899999999999877666665545322                                              23


Q ss_pred             ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH
Q 010176          371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR  411 (516)
Q Consensus       371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r  411 (516)
                      +.+.++++.+|++++++|...|..  .|.++++.+...|..
T Consensus        95 ~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~  133 (166)
T PRK06762         95 GNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNP  133 (166)
T ss_pred             CCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhh
Confidence            457789999999999999999973  577776665555444

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.49  E-value=2.2e-13  Score=149.04  Aligned_cols=108  Identities=19%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..+|.||+|+|+|||||||+++.++...       ++++||.|++..                        ++    .+.
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-------g~~~vn~D~lg~------------------------~~----~~~  410 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-------GYKHVNADTLGS------------------------TQ----NCL  410 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHc-------CCeEECcHHHHH------------------------HH----HHH
Confidence            4689999999999999999999999887       459996655421                        11    123


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+.++|++|++||+|+||..++.|..++++|++                                              
T Consensus       411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~----------------------------------------------  444 (526)
T TIGR01663       411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARA----------------------------------------------  444 (526)
T ss_pred             HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHH----------------------------------------------
Confidence            4788999999999999999999999999988854                                              


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcC
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMK  397 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gG  397 (516)
                      .|+.+.++++.+|.+++..|...|.....
T Consensus       445 ~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~  473 (526)
T TIGR01663       445 AGIPCRCFLFNAPLAQAKHNIAFRELSDS  473 (526)
T ss_pred             cCCeEEEEEeCCCHHHHHHHHHhhccCCc
Confidence            35678889999999999999999987433

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.45  E-value=2.8e-12  Score=118.84  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=95.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA  294 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~a  294 (516)
                      |++.|+|||||||+++.|+..+       +.++||.|.+......++.+.+......  .     ....+..+...+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-------~~~~v~~D~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~   66 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-------GAKFIEGDDLHPAANIEKMSAGIPLNDD--D-----RWPWLQNLNDASTAA   66 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-------CCeEEeCccccChHHHHHHHcCCCCChh--h-----HHHHHHHHHHHHHHH
Confidence            4688999999999999999998       3589999998654334454444321111  1     112223344466678


Q ss_pred             HhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEE
Q 010176          295 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE  374 (516)
Q Consensus       295 L~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~  374 (516)
                      +..|.++|+++|+..+.+|+.+.                                                  ..++.+.
T Consensus        67 l~~~~~~Vi~~t~~~~~~r~~~~--------------------------------------------------~~~~~~~   96 (163)
T TIGR01313        67 AAKNKVGIITCSALKRHYRDILR--------------------------------------------------EAEPNLH   96 (163)
T ss_pred             HhcCCCEEEEecccHHHHHHHHH--------------------------------------------------hcCCCEE
Confidence            88898899999988766554321                                                  1234567


Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN  432 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn  432 (516)
                      ++++.+|++++.+|...|.   |+.++.+.+...|..+..+.  + .- .++.++||+
T Consensus        97 ~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~--~-~e-~~~~~id~~  147 (163)
T TIGR01313        97 FIYLSGDKDVILERMKARK---GHFMKADMLESQFAALEEPL--A-DE-TDVLRVDID  147 (163)
T ss_pred             EEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCC--C-CC-CceEEEECC
Confidence            7899999999999999995   56666655555444422110  0 01 246888865

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG4639 Predicted kinase [General function prediction only]

Probab=99.42  E-value=2.9e-12  Score=119.09  Aligned_cols=132  Identities=20%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      ++.|+++.|+|||||||+++.....         ..+++.|+++.      .+... .   ....+..-...+.+.+...
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~~---------~~~lsld~~r~------~lg~~-~---~~e~sqk~~~~~~~~l~~~   61 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFLQ---------NYVLSLDDLRL------LLGVS-A---SKENSQKNDELVWDILYKQ   61 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCCC---------cceecHHHHHH------Hhhhc-h---hhhhccccHHHHHHHHHHH
Confidence            3689999999999999999975433         36785555543      23111 0   0011111122345556669


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      ++..|..|...|+|||..+++.|..+++||..+                                              |
T Consensus        62 l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y----------------------------------------------~   95 (168)
T COG4639          62 LEQRLRRGKFTIIDATNLRREDRRKLIDLAKAY----------------------------------------------G   95 (168)
T ss_pred             HHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHh----------------------------------------------C
Confidence            999999999999999999999999999998764                                              3


Q ss_pred             ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH
Q 010176          371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR  411 (516)
Q Consensus       371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r  411 (516)
                      |.+.+|+++.|++++.+|...|.    |.||++.+.++++.
T Consensus        96 ~~~~~ivfdtp~~~c~aRNk~~~----Rqv~~~VI~r~~r~  132 (168)
T COG4639          96 YKIYAIVFDTPLELCLARNKLRE----RQVPEEVIPRMLRE  132 (168)
T ss_pred             CeEEEEEEeCCHHHHHHHhhccc----hhCCHHHHHHHHHH
Confidence            55777889999999999888555    89999999888877

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.40  E-value=7.2e-12  Score=114.37  Aligned_cols=132  Identities=16%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ||+++|+|||||||+++.|++.+       +..+++.|.++..-...+...+... .+...  +.    ....+...+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-------~~~~i~~D~~~~~~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~~~~   66 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-------GAPFIDGDDLHPPANIAKMAAGIPL-NDEDR--WP----WLQALTDALLA   66 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-------CCEEEeCcccccHHHHHHHHcCCCC-Cccch--hh----HHHHHHHHHHH
Confidence            58899999999999999999987       4589999998764222222223211 11000  11    11111112222


Q ss_pred             -HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCce
Q 010176          294 -ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR  372 (516)
Q Consensus       294 -aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~  372 (516)
                       .+..|.+||+|+++..+.+++.+.++|                                                .|+.
T Consensus        67 ~l~~~~~~vVid~~~~~~~~r~~~~~~~------------------------------------------------~~~~   98 (150)
T cd02021          67 KLASAGEGVVVACSALKRIYRDILRGGA------------------------------------------------ANPR   98 (150)
T ss_pred             HHHhCCCCEEEEeccccHHHHHHHHhcC------------------------------------------------CCCC
Confidence             235899999999998877665543332                                                2455


Q ss_pred             EEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHH
Q 010176          373 IELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK  410 (516)
Q Consensus       373 I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~  410 (516)
                      +.++++.||+++..+|...|.   ++..|...+...++
T Consensus        99 ~~~v~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~  133 (150)
T cd02021          99 VRFVHLDGPREVLAERLAARK---GHFMPADLLDSQFE  133 (150)
T ss_pred             EEEEEEECCHHHHHHHHHhcc---cCCCCHHHHHHHHH
Confidence            778999999999999999995   55555444444333

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.36  E-value=7.3e-12  Score=118.01  Aligned_cols=128  Identities=17%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH-h-cCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL-S-SKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L-~-~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ..+|++.|+|||||||+++.|.+.++.     ..++++.|.+...-+....- . +....++..+.++..+...|.....
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~   76 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAE-----PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE   76 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCC-----CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence            458999999999999999999988732     34677777664331110000 0 0000010111222235566777777


Q ss_pred             HHHHHHhCCCcEEEeCCCC-ChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          290 LLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs-~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      .+..++++|.+||+|+++. .+..++.+..+                                                 
T Consensus        77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~-------------------------------------------------  107 (175)
T cd00227          77 AVAAMARAGANVIADDVFLGRAALQDCWRSF-------------------------------------------------  107 (175)
T ss_pred             HHHHHHhCCCcEEEeeeccCCHHHHHHHHHh-------------------------------------------------
Confidence            8899999999999999998 45444332111                                                 


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                      .+..+.+|++.||.+++.+|...|.
T Consensus       108 ~~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227         108 VGLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             cCCCEEEEEEECCHHHHHHHHHhcC
Confidence            1234678999999999999999985

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.34  E-value=3.7e-11  Score=116.55  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC---C-CCChhhHHH----------
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---G-HHDDMLQTA----------  276 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~---~-~~~~~~y~~----------  276 (516)
                      .|.+|+++|+|||||||+++.|+++++.      ..++      .+|.+|+.+.+.   + ......|.+          
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~------~~~~------~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~   69 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI------DIVL------SGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDE   69 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC------eEEe------hhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchh
Confidence            5789999999999999999999999853      3567      455555555432   1 000000100          


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhc
Q 010176          277 ------ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQV  350 (516)
Q Consensus       277 ------e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v  350 (516)
                            ....+.++..+...+..++.+|++||+|+++..+.+++.    +.                             
T Consensus        70 ~~~~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~-----------------------------  116 (197)
T PRK12339         70 NIVKGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NR-----------------------------  116 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HH-----------------------------
Confidence                  001234555677889999999999999999999876532    10                             


Q ss_pred             cccchhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHH
Q 010176          351 KEGEEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFA  413 (516)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~  413 (516)
                                       ..+  +.++++. .|+++...|+..|...++++.|.++.++.|+...
T Consensus       117 -----------------~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir  161 (197)
T PRK12339        117 -----------------TNN--IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYR  161 (197)
T ss_pred             -----------------hcC--eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence                             011  2344554 5899999999999999999999876666555433

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.27  E-value=7.4e-11  Score=117.32  Aligned_cols=134  Identities=20%  Similarity=0.244  Sum_probs=90.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ||+++|+|||||||+++.|++.+..  .+.+.++++.|.++..      +...    ...+. ..    ........+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~--~~~~v~~i~~D~lr~~------~~~~----~~~~e-~~----~~~~~~~~i~~   63 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSE--KNIDVIILGTDLIRES------FPVW----KEKYE-EF----IRDSTLYLIKT   63 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH--cCCceEEEccHHHHHH------hHHh----hHHhH-HH----HHHHHHHHHHH
Confidence            6899999999999999999987732  1235678866655432      2110    00011 11    11223347888


Q ss_pred             HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI  373 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I  373 (516)
                      +++.|..||+|+++....+|..+..+|+..                                              ++..
T Consensus        64 ~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~----------------------------------------------~~~~   97 (249)
T TIGR03574        64 ALKNKYSVIVDDTNYYNSMRRDLINIAKEY----------------------------------------------NKNY   97 (249)
T ss_pred             HHhCCCeEEEeccchHHHHHHHHHHHHHhC----------------------------------------------CCCE
Confidence            999999999999998877777776665432                                              3345


Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHH
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFAN  414 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~  414 (516)
                      .+|++.+|+++++.|...|    |+.+|.+.+...+.+|..
T Consensus        98 ~~I~l~~p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~e~  134 (249)
T TIGR03574        98 IIIYLKAPLDTLLRRNIER----GEKIPNEVIKDMYEKFDE  134 (249)
T ss_pred             EEEEecCCHHHHHHHHHhC----CCCCCHHHHHHHHHhhCC
Confidence            6688999999999998776    456776666666666643

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.22  E-value=1.1e-10  Score=107.79  Aligned_cols=115  Identities=16%  Similarity=0.083  Sum_probs=77.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      +++|+|+|||||||+++.|+..+..  .+.++++++.|.+      ++.+.+...     +..+. ....++.+...+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~--~g~~~~~i~~d~~------r~~l~~~~~-----~~~~~-~~~~~~~~~~~a~~   66 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ--RGRPVYVLDGDNV------RHGLNKDLG-----FSRED-REENIRRIAEVAKL   66 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCHHH------HHhhhhccC-----CCcch-HHHHHHHHHHHHHH
Confidence            3788999999999999999998732  1124678855554      444443200     11111 12233334456777


Q ss_pred             HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI  373 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I  373 (516)
                      .+++|.+||+|+++.++..|..+.+++                                              .  ++.+
T Consensus        67 l~~~G~~VIid~~~~~~~~R~~~~~l~----------------------------------------------~--~~~~   98 (149)
T cd02027          67 LADAGLIVIAAFISPYREDREAARKII----------------------------------------------G--GGDF   98 (149)
T ss_pred             HHhCCCEEEEccCCCCHHHHHHHHHhc----------------------------------------------C--CCCE
Confidence            888999999999999888876654442                                              1  4557


Q ss_pred             EEEEEecCHHHHHHHHH
Q 010176          374 ELVGVVCDAYLAVVRGI  390 (516)
Q Consensus       374 ~li~V~~d~elav~R~~  390 (516)
                      .++++.||++++..|..
T Consensus        99 ~~i~l~~~~e~~~~R~~  115 (149)
T cd02027          99 LEVFVDTPLEVCEQRDP  115 (149)
T ss_pred             EEEEEeCCHHHHHHhCc
Confidence            78999999999988753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.18  E-value=3.1e-10  Score=107.58  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=66.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..+|.+++|+|+|||||||+++.|...+..  .+.++++++.|.+      ++.+.+..     .|..+. ....+..+.
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~--~~~~~~~l~~d~~------r~~l~~~~-----~~~~~~-~~~~~~~~~   80 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLES--KGYRVYVLDGDNV------RHGLNKDL-----GFSEED-RKENIRRIG   80 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECChHH------Hhhhcccc-----CCCHHH-HHHHHHHHH
Confidence            356899999999999999999999988631  1224688855554      44454421     111222 223334445


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      ..+...+.+|.+||+|+++..+.+|+.+..+
T Consensus        81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~  111 (184)
T TIGR00455        81 EVAKLFVRNGIIVITSFISPYRADRQMVREL  111 (184)
T ss_pred             HHHHHHHcCCCEEEEecCCCCHHHHHHHHHh
Confidence            5777889999999999999998888766544

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.18  E-value=5.4e-10  Score=105.13  Aligned_cols=156  Identities=15%  Similarity=0.205  Sum_probs=90.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHH------HHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE------LVHQSSTDAA  287 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e------~v~~~~~~~a  287 (516)
                      +|+|.|+|||||||+++.|++++       ++++|++++     .+++.+...  ++.......      .+...   .+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~-------~~~~is~~d-----~lr~~~~~~--~~~~~~~~~~~~~g~~~~~~---~~   63 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF-------GFTHLSAGD-----LLRAEIKSG--SENGELIESMIKNGKIVPSE---VT   63 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-------CCeEEECCh-----HHHHHHhcC--ChHHHHHHHHHHCCCcCCHH---HH
Confidence            47899999999999999999998       458996533     333333321  000000000      00000   11


Q ss_pred             HHHHHHHHhC--CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176          288 SSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV  365 (516)
Q Consensus       288 ~~la~~aL~~--G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~  365 (516)
                      ..++...+..  +..||+|+.+.+..++..+..++..                                           
T Consensus        64 ~~ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~-------------------------------------------  100 (183)
T TIGR01359        64 VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDN-------------------------------------------  100 (183)
T ss_pred             HHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhc-------------------------------------------
Confidence            1233344432  6789999999887766655443210                                           


Q ss_pred             ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhH---HHhhccCceEEEEecC
Q 010176          366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF---RNYCELVDNARLYCTN  432 (516)
Q Consensus       366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~---~~y~~lvD~~~lydnn  432 (516)
                        .....+ ++++.+|++.+..|...|....||.-. .+.+.+++..|.+..   ..|...-+.+..+|++
T Consensus       101 --~~~~d~-~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~  168 (183)
T TIGR01359       101 --KVNFKF-VLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAE  168 (183)
T ss_pred             --CCCCCE-EEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence              001122 588899999999999999765555433 445555554444433   3333444667888855

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14527 adenylate kinase; Provisional

Probab=99.15  E-value=2.1e-09  Score=102.74  Aligned_cols=149  Identities=13%  Similarity=0.115  Sum_probs=90.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHH---HHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTD  285 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~---~~~~  285 (516)
                      ..+|.+|++.|+|||||||+++.|++.++       ..+++.|++     +++.+....  +......+....   ...+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~-------~~~is~gd~-----~r~~~~~~~--~~~~~~~~~~~~g~~~p~~   68 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELG-------LKKLSTGDI-----LRDHVARGT--ELGQRAKPIMEAGDLVPDE   68 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC-------CCCCCccHH-----HHHHHhcCc--HHHHHHHHHHHcCCCCcHH
Confidence            34689999999999999999999999984       477855433     233332210  000000000000   0001


Q ss_pred             HHHHHHHHHHhC--CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhh
Q 010176          286 AASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR  363 (516)
Q Consensus       286 ~a~~la~~aL~~--G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~  363 (516)
                      .+..++...+.+  +..+|+|+...+..+++.+..+++..                                        
T Consensus        69 ~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~----------------------------------------  108 (191)
T PRK14527         69 LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEEL----------------------------------------  108 (191)
T ss_pred             HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHc----------------------------------------
Confidence            123345555544  46799999777777766655554321                                        


Q ss_pred             ccccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHH
Q 010176          364 QVFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFR  417 (516)
Q Consensus       364 ~~~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~  417 (516)
                            |..+ .+++++||+++++.|...|....||.- .++.+.++++.|.++..
T Consensus       109 ------g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~  158 (191)
T PRK14527        109 ------GARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQ  158 (191)
T ss_pred             ------CCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhH
Confidence                  1222 257889999999999999987666643 36666666666655444

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.14  E-value=2.2e-09  Score=115.66  Aligned_cols=171  Identities=16%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             HHHHHhHHHHHh-ccchHHHHHHHHhcccccccccccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEE
Q 010176          169 KVTKDLKMKRVF-STLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV  247 (516)
Q Consensus       169 RA~vRaKV~~~~-~~~~~e~~~~~~~~A~~~~~~~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~  247 (516)
                      |+.+|.+|.... ....++.... -.+++.+.        ...+|.+|+++|+|||||||++..|+..+++      ..+
T Consensus       220 ra~VR~~V~~~L~~~l~~~~a~~-y~la~~i~--------~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~------~~i  284 (475)
T PRK12337        220 RDQLRRKVEALLLEEAGEEVARR-YRLLRSIR--------RPPRPLHVLIGGVSGVGKSVLASALAYRLGI------TRI  284 (475)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHH-HHHHHHhh--------ccCCCeEEEEECCCCCCHHHHHHHHHHHcCC------cEE
Confidence            899999998765 3222211111 12333333        4457999999999999999999999999854      247


Q ss_pred             EeCcccccchHHHHHHhcC---C-----C-----------CC-----hhhHH-----H-HHHHHHHHHHHHHHHHHHHhC
Q 010176          248 VEADAFKETDVIYRALSSK---G-----H-----------HD-----DMLQT-----A-ELVHQSSTDAASSLLVTALNE  297 (516)
Q Consensus       248 IdaD~ir~sD~irk~L~~~---~-----~-----------~~-----~~~y~-----~-e~v~~~~~~~a~~la~~aL~~  297 (516)
                      |++|.++.      .+.+.   +     +           .+     ...+.     . ...-+.+...+..+++.++..
T Consensus       285 i~tD~iR~------~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~e  358 (475)
T PRK12337        285 VSTDAVRE------VLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQE  358 (475)
T ss_pred             eehhHHHH------HHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            86666553      22221   0     0           00     00010     0 000112334467899999999


Q ss_pred             CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEE
Q 010176          298 GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVG  377 (516)
Q Consensus       298 G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~  377 (516)
                      |.|||+|++...+.+++.    +.                                             +..+--|. +.
T Consensus       359 G~SvIIEGVHl~P~~i~~----~~---------------------------------------------~~~~~~i~-fl  388 (475)
T PRK12337        359 GTSLVLEGVHLVPGYLRH----PY---------------------------------------------QAGALVVP-ML  388 (475)
T ss_pred             CCeEEEECCCCCHHHHHH----HH---------------------------------------------hcCCceEE-EE
Confidence            999999999999876541    10                                             11111132 34


Q ss_pred             Ee-cCHHHHHHHHHHhhhhcCcccchhhhHhHHH
Q 010176          378 VV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK  410 (516)
Q Consensus       378 V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~  410 (516)
                      |+ .|.+....|...|...++..-|.++.++.|+
T Consensus       389 v~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~  422 (475)
T PRK12337        389 VTLPDEALHRRRFELRDRETGASRPRERYLRHFE  422 (475)
T ss_pred             EEECCHHHHHHHHHHHhhhccCCCchhHHHHhHH
Confidence            44 5999999999999998877777666555444

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=6.5e-10  Score=103.50  Aligned_cols=139  Identities=13%  Similarity=0.081  Sum_probs=97.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      .+-|..|++.|++||||||+++.|.+++++       .++|+|++...-...|.-.|. ..++...++.+ + ..    .
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~-------~F~dgDd~Hp~~NveKM~~Gi-pLnD~DR~pWL-~-~i----~   74 (191)
T KOG3354|consen    9 GPFKYVIVVMGVSGSGKSTIGKALSEELGL-------KFIDGDDLHPPANVEKMTQGI-PLNDDDRWPWL-K-KI----A   74 (191)
T ss_pred             CCCceeEEEEecCCCChhhHHHHHHHHhCC-------cccccccCCCHHHHHHHhcCC-CCCcccccHHH-H-HH----H
Confidence            345678999999999999999999999976       899999998655455543332 11232233333 1 11    1


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+...+..|+-||+-++-+.+.||+.+..-.                                        ..|++.+.
T Consensus        75 ~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl----------------------------------------~~gk~~~~  114 (191)
T KOG3354|consen   75 VELRKALASGQGVVLACSALKKKYRDILRHSL----------------------------------------KDGKPGKC  114 (191)
T ss_pred             HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhc----------------------------------------ccCCccCC
Confidence            23444555899999999999998888765311                                        11222344


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS  404 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~  404 (516)
                      ....+.++++..+.|+-..|...|.   ||.+|.+.
T Consensus       115 ~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~l  147 (191)
T KOG3354|consen  115 PESQLHFILLSASFEVILKRLKKRK---GHFMPADL  147 (191)
T ss_pred             ccceEEEeeeeccHHHHHHHHhhcc---cccCCHHH
Confidence            5566888888899999999999998   79999654

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.11  E-value=9.2e-10  Score=103.21  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|.+|+++|+|||||||+|+.|.+.+.-  .+..+.+||.|.++..      |...     ..++.+- ..+..+.+..+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~--~g~~~~~LDgD~lR~~------l~~d-----l~fs~~d-R~e~~rr~~~~   66 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFA--RGIKVYLLDGDNLRHG------LNAD-----LGFSKED-REENIRRIAEV   66 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHH--TTS-EEEEEHHHHCTT------TTTT-------SSHHH-HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEecCcchhhc------cCCC-----CCCCHHH-HHHHHHHHHHH
Confidence            5889999999999999999999988842  2457899988887754      3321     1111122 33444556778


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      +....++|..||+.+.-..++.|+.+.++
T Consensus        67 A~ll~~~G~ivIva~isp~~~~R~~~R~~   95 (156)
T PF01583_consen   67 AKLLADQGIIVIVAFISPYREDREWAREL   95 (156)
T ss_dssp             HHHHHHTTSEEEEE----SHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEEeeccCchHHHHHHHHh
Confidence            99999999999999888888877766544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14532 adenylate kinase; Provisional

Probab=99.08  E-value=2.2e-09  Score=101.78  Aligned_cols=123  Identities=20%  Similarity=0.160  Sum_probs=74.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC---------ChhhHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH---------DDMLQTAELVHQSSTD  285 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~---------~~~~y~~e~v~~~~~~  285 (516)
                      |++.|+|||||||+++.|++.++       .++|++|++-     ++.+......         ....+..+.    +..
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g-------~~~is~~d~l-----r~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~   66 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG-------MVQLSTGDML-----RAAIASGSELGQRVKGIMDRGELVSDEI----VIA   66 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-------CeEEeCcHHH-----HHHHHcCCHHHHHHHHHHHCCCccCHHH----HHH
Confidence            78899999999999999999984       5899774432     2222110000         000011111    111


Q ss_pred             HHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176          286 AASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV  365 (516)
Q Consensus       286 ~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~  365 (516)
                      .+...+ ..+..|..||+|+...+..+++.+.+++...                                          
T Consensus        67 ~~~~~~-~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~------------------------------------------  103 (188)
T PRK14532         67 LIEERL-PEAEAAGGAIFDGFPRTVAQAEALDKMLASR------------------------------------------  103 (188)
T ss_pred             HHHHHH-hCcCccCcEEEeCCCCCHHHHHHHHHHHHhc------------------------------------------
Confidence            111122 1223577899999999888877766554321                                          


Q ss_pred             ccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176          366 FSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAV  400 (516)
Q Consensus       366 ~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~V  400 (516)
                          |..+ .++++++|++.++.|...|....+|.-
T Consensus       104 ----g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~d  135 (188)
T PRK14532        104 ----GQKIDVVIRLKVDDEALIERIVKRFEEQGRPD  135 (188)
T ss_pred             ----CCCCCEEEEEECCHHHHHHHHHcCcCcCCCCC
Confidence                1112 358889999999999999975545544

>PRK06696 uridine kinase; Validated

Probab=99.07  E-value=3.2e-10  Score=111.17  Aligned_cols=54  Identities=19%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS  264 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~  264 (516)
                      ...|.+|.|+|+|||||||+|+.|++.+..  .+-.++++..|+|-..+..++.+.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--~g~~v~~~~~Ddf~~~~~~r~~~~   72 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKK--RGRPVIRASIDDFHNPRVIRYRRG   72 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeccccccCCHHHHHHcC
Confidence            457999999999999999999999998832  012456778899988877766553

>PLN02200 adenylate kinase family protein

Probab=99.04  E-value=8.8e-09  Score=102.41  Aligned_cols=162  Identities=16%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHH-----
Q 010176          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAEL-----  278 (516)
Q Consensus       204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~-----  278 (516)
                      +..+..+.|.+|+|.|+|||||||+++.|++.++       ..+|+.++     .+|+.+....  +......+.     
T Consensus        35 ~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g-------~~his~gd-----llR~~i~~~s--~~~~~i~~~~~~G~  100 (234)
T PLN02200         35 GSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG-------FKHLSAGD-----LLRREIASNS--EHGAMILNTIKEGK  100 (234)
T ss_pred             cCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC-------CeEEEccH-----HHHHHHhccC--hhHHHHHHHHHcCC
Confidence            3333456789999999999999999999999984       47885533     3344443311  000000000     


Q ss_pred             -HHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccch
Q 010176          279 -VHQSSTDAASSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE  355 (516)
Q Consensus       279 -v~~~~~~~a~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~  355 (516)
                       +..   +....++...+.  .+..+|+|+......++..+..++.                                  
T Consensus       101 ~vp~---e~~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~----------------------------------  143 (234)
T PLN02200        101 IVPS---EVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIG----------------------------------  143 (234)
T ss_pred             CCcH---HHHHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhc----------------------------------
Confidence             000   001112222222  2467999998877655544332210                                  


Q ss_pred             hhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhHHH---hhccCceEEEEec
Q 010176          356 DYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFRN---YCELVDNARLYCT  431 (516)
Q Consensus       356 ~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~~~---y~~lvD~~~lydn  431 (516)
                                  ..+  -.++++.+++++.+.|...|..  +|... ++.+.++.+.|......   |-+--+.++.+|+
T Consensus       144 ------------~~p--d~vi~Ld~~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa  207 (234)
T PLN02200        144 ------------AEP--NVVLFFDCPEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINA  207 (234)
T ss_pred             ------------cCC--CEEEEEECCHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence                        011  1357889999999999998853  34322 44555555555544333   3222345677774


Q ss_pred             C
Q 010176          432 N  432 (516)
Q Consensus       432 n  432 (516)
                      +
T Consensus       208 ~  208 (234)
T PLN02200        208 V  208 (234)
T ss_pred             C
Confidence            4

>PRK14531 adenylate kinase; Provisional

Probab=99.02  E-value=5.9e-09  Score=99.17  Aligned_cols=156  Identities=15%  Similarity=0.111  Sum_probs=84.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhh----HHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDML----QTAELVHQSSTDAA  287 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~----y~~e~v~~~~~~~a  287 (516)
                      +.-|++.|+|||||||+++.|++.+       +..+|+++     |.+|+++.+........    .....+..++.   
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~-------g~~~is~g-----d~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~---   66 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAH-------GLRHLSTG-----DLLRSEVAAGSALGQEAEAVMNRGELVSDALV---   66 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-------CCCeEecc-----cHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHH---
Confidence            3458889999999999999999998       45889653     33444443310000000    00000011111   


Q ss_pred             HHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176          288 SSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV  365 (516)
Q Consensus       288 ~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~  365 (516)
                      ..+....+.  .+..+|+|+...+..+...+.+++....                                         
T Consensus        67 ~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~-----------------------------------------  105 (183)
T PRK14531         67 LAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELK-----------------------------------------  105 (183)
T ss_pred             HHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcC-----------------------------------------
Confidence            112222222  3567999999998877666554433210                                         


Q ss_pred             ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHHhHH---HhhccCceEEEEec
Q 010176          366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFANAFR---NYCELVDNARLYCT  431 (516)
Q Consensus       366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~~~~---~y~~lvD~~~lydn  431 (516)
                        ..+  ..++++.||+++.+.|...|.    |. -..+.+.+++..|.....   +|-+--+.+..+|+
T Consensus       106 --~~~--~~vi~l~~~~~~l~~Rl~~R~----r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~  167 (183)
T PRK14531        106 --QPI--EAVVLLELDDAVLIERLLARG----RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEA  167 (183)
T ss_pred             --CCC--CeEEEEECCHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence              011  125888999999999999883    42 234455455554444333   33222334555553

>PRK12338 hypothetical protein; Provisional

Probab=99.02  E-value=8.7e-09  Score=106.72  Aligned_cols=128  Identities=19%  Similarity=0.260  Sum_probs=85.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCC-C--CC---hhhHHH-------
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-H--HD---DMLQTA-------  276 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~-~--~~---~~~y~~-------  276 (516)
                      ++|.+|+++|+|||||||+|+.|++.+++      ..++..|.+      ++.+.+.. .  .|   ...|.+       
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~------~~~~~tD~~------r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~   69 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNI------KHLIETDFI------REVVRGIIGKEYAPALHKSSYNAYTALRDK   69 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCC------eEEccChHH------HHHHcCCCCcccCchhhcccHHHHhhcCCc
Confidence            46899999999999999999999999854      234544444      44444421 0  00   000110       


Q ss_pred             -------H-------HHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcc
Q 010176          277 -------E-------LVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTV  342 (516)
Q Consensus       277 -------e-------~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~  342 (516)
                             +       ...+.+...+...+..++..|.++|+||+...|.+....    +                     
T Consensus        70 ~~~~~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~----~---------------------  124 (319)
T PRK12338         70 ENFKNNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE----Q---------------------  124 (319)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh----h---------------------
Confidence                   0       012334555677899999999999999999988765421    0                     


Q ss_pred             cccchhhccccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCc
Q 010176          343 IENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR  398 (516)
Q Consensus       343 ~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr  398 (516)
                                              ......|.++.+..|.+....|...|...++|
T Consensus       125 ------------------------~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r  156 (319)
T PRK12338        125 ------------------------FEENASIHFFILSADEEVHKERFVKRAMEIKR  156 (319)
T ss_pred             ------------------------hcccCceEEEEEECCHHHHHHHHHHhhhccCC
Confidence                                    00112355566668999999999999987776

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.8e-09  Score=98.61  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             cCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010176          219 GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEG  298 (516)
Q Consensus       219 G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~aL~~G  298 (516)
                      |.+||||||++..|+++++       +.+||.|++.....+.|.-.|. +..+....+.+      +.+...+......|
T Consensus         2 GVsG~GKStvg~~lA~~lg-------~~fidGDdlHp~aNi~KM~~Gi-PL~DdDR~pWL------~~l~~~~~~~~~~~   67 (161)
T COG3265           2 GVSGSGKSTVGSALAERLG-------AKFIDGDDLHPPANIEKMSAGI-PLNDDDRWPWL------EALGDAAASLAQKN   67 (161)
T ss_pred             CCCccCHHHHHHHHHHHcC-------CceecccccCCHHHHHHHhCCC-CCCcchhhHHH------HHHHHHHHHhhcCC
Confidence            8999999999999999995       4899999998877777765553 22233333433      22223555556678


Q ss_pred             CcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEEE
Q 010176          299 RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGV  378 (516)
Q Consensus       299 ~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V  378 (516)
                      .++|+-++-+.+.||+.++.-                                                ..+  +.+||+
T Consensus        68 ~~~vi~CSALKr~YRD~LR~~------------------------------------------------~~~--~~Fv~L   97 (161)
T COG3265          68 KHVVIACSALKRSYRDLLREA------------------------------------------------NPG--LRFVYL   97 (161)
T ss_pred             CceEEecHHHHHHHHHHHhcc------------------------------------------------CCC--eEEEEe
Confidence            888998888888888875311                                                112  788999


Q ss_pred             ecCHHHHHHHHHHhhhhcCcccchhhhHh
Q 010176          379 VCDAYLAVVRGIRRAIMMKRAVRVNSQLK  407 (516)
Q Consensus       379 ~~d~elav~R~~~R~~~gGr~Vp~~~ql~  407 (516)
                      ..+.++...|+..|.   ||.+|......
T Consensus        98 ~g~~~~i~~Rm~~R~---gHFM~~~ll~S  123 (161)
T COG3265          98 DGDFDLILERMKARK---GHFMPASLLDS  123 (161)
T ss_pred             cCCHHHHHHHHHhcc---cCCCCHHHHHH
Confidence            999999999999997   99999655433

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.00  E-value=4.2e-09  Score=100.45  Aligned_cols=121  Identities=16%  Similarity=0.226  Sum_probs=75.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC----CCC----ChhhHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHH----DDMLQTAELVHQSST  284 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~----~~~----~~~~y~~e~v~~~~~  284 (516)
                      .+|++.|+|-|||||+++.|.+.+.     ....++.-|.|.      +.+.+.    +..    ++.... ......++
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~   69 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFV------DMMPPGRYRPGDGLEPAGDRPDG-GPLFRRLY   69 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHH------HHS-GGGGTSTTSEEEETTSEEE--HHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHH------hhcCcccccCCccccccccCCch-hHHHHHHH
Confidence            5899999999999999999999883     356889555554      333221    000    000001 12255566


Q ss_pred             HHHHHHHHHHHhCCCcEEEeCCCCChHH-HHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhh
Q 010176          285 DAASSLLVTALNEGRDVIMDGTLSWVPF-VEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR  363 (516)
Q Consensus       285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~-r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~  363 (516)
                      ..+..-+....+.|.+||+|.++..+.+ .+.+.++                                            
T Consensus        70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~--------------------------------------------  105 (174)
T PF07931_consen   70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRL--------------------------------------------  105 (174)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHH--------------------------------------------
Confidence            6666788889999999999999988754 2221111                                            


Q ss_pred             ccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176          364 QVFSRKPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       364 ~~~~~~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                          =.||.|.+|+|.||++++.+|-+.|.
T Consensus       106 ----L~~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen  106 ----LAGLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             ----HTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             ----hCCCceEEEEEECCHHHHHHHHHhcC
Confidence                13678999999999999988888886

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.99  E-value=3.9e-09  Score=102.65  Aligned_cols=141  Identities=19%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHH-HHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST-DAASSLL  291 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~-~~a~~la  291 (516)
                      .||+++|+|||||||+|+.|++.+.-  ..-..+++.+|...      --++..  + .+..  ..+|.++. +....++
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~--~i~~vi~l~kdy~~------~i~~DE--s-lpi~--ke~yres~~ks~~rll   68 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQ--EIWRVIHLEKDYLR------GILWDE--S-LPIL--KEVYRESFLKSVERLL   68 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHH--hhhhccccchhhhh------heeccc--c-cchH--HHHHHHHHHHHHHHHH
Confidence            37899999999999999999987721  11144666443321      001110  0 1111  11122222 1223366


Q ss_pred             HHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCc
Q 010176          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY  371 (516)
Q Consensus       292 ~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy  371 (516)
                      ..+++ .+-||+|+|.--.++|.++.-.|.+.                                            ..+|
T Consensus        69 dSalk-n~~VIvDdtNYyksmRrqL~ceak~~--------------------------------------------~tt~  103 (261)
T COG4088          69 DSALK-NYLVIVDDTNYYKSMRRQLACEAKER--------------------------------------------KTTW  103 (261)
T ss_pred             HHHhc-ceEEEEecccHHHHHHHHHHHHHHhc--------------------------------------------CCce
Confidence            67776 77899999999999999887666542                                            1122


Q ss_pred             eEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHH
Q 010176          372 RIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFR  417 (516)
Q Consensus       372 ~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~  417 (516)
                        -+|++.|+++++..|-    .+.|.+.|.+...+.|.||-++=.
T Consensus       104 --ciIyl~~plDtc~rrN----~ergepip~Evl~qly~RfEePn~  143 (261)
T COG4088         104 --CIIYLRTPLDTCLRRN----RERGEPIPEEVLRQLYDRFEEPNP  143 (261)
T ss_pred             --EEEEEccCHHHHHHhh----ccCCCCCCHHHHHHHHHhhcCCCC
Confidence              3588899999996655    667899999999999999987543

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.99  E-value=1.2e-08  Score=97.21  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASS  289 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--~~y~~e~v~~~~~~~a~~  289 (516)
                      ..++++.|+|||||||+++.|+..+.       .++++.|.+.....+++...+......  ..|.... .+.++     
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~-------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~-----   69 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS-------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERL-NDASY-----   69 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC-------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHH-HHHHH-----
Confidence            45789999999999999999999874       379999998655445665544322111  1122111 12121     


Q ss_pred             HHHHHHhCCC-cEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          290 LLVTALNEGR-DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       290 la~~aL~~G~-sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                         ..+..+. .+|+ +||..+.+|+.+    ++                                              
T Consensus        70 ---~~~~~~~~g~iv-~s~~~~~~R~~~----r~----------------------------------------------   95 (176)
T PRK09825         70 ---SLYKKNETGFIV-CSSLKKQYRDIL----RK----------------------------------------------   95 (176)
T ss_pred             ---HHHhcCCCEEEE-EEecCHHHHHHH----Hh----------------------------------------------
Confidence               1223223 3344 889888777643    11                                              


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVN  403 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~  403 (516)
                      .+..+.++++.|++++...|+..|.   ||.++.+
T Consensus        96 ~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~~~~  127 (176)
T PRK09825         96 SSPNVHFLWLDGDYETILARMQRRA---GHFMPPD  127 (176)
T ss_pred             hCCCEEEEEEeCCHHHHHHHHhccc---CCCCCHH
Confidence            1233677899999999999999996   5766543

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.98  E-value=2.8e-08  Score=93.31  Aligned_cols=124  Identities=19%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--------hhHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--------MLQTAELVHQSST  284 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--------~~y~~e~v~~~~~  284 (516)
                      .+|++.|+|||||||+++.|++.++       ..+++++++     +++.+.+......        ..+.+   ...++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g-------~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   68 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYG-------FTHLSTGDL-----LRAEVASGSERGKQLQAIMESGDLVP---LDTVL   68 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH-----HHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHH
Confidence            3677889999999999999999884       478866432     3333322100000        00000   11222


Q ss_pred             HHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhc
Q 010176          285 DAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ  364 (516)
Q Consensus       285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~  364 (516)
                      ..+...+...+..|..||+|+..........+   ...                                          
T Consensus        69 ~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~---~~~------------------------------------------  103 (188)
T TIGR01360        69 DLLKDAMVAALGTSKGFLIDGYPREVKQGEEF---ERR------------------------------------------  103 (188)
T ss_pred             HHHHHHHHcccCcCCeEEEeCCCCCHHHHHHH---HHc------------------------------------------
Confidence            33334455557788999999876553222211   100                                          


Q ss_pred             cccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176          365 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV  400 (516)
Q Consensus       365 ~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V  400 (516)
                        .  +....++++.+|++.++.|...|....+|..
T Consensus       104 --~--~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d  135 (188)
T TIGR01360       104 --I--GPPTLVLYFDCSEDTMVKRLLKRAETSGRVD  135 (188)
T ss_pred             --C--CCCCEEEEEECCHHHHHHHHHcccccCCCCC
Confidence              0  0112357889999999999999976555543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.95  E-value=4.9e-09  Score=117.84  Aligned_cols=96  Identities=14%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      .+|.+|+|+|+|||||||+|+.|+..+..  .+.++++||.|+++      +.+.+.     ..|+.+. ....+..+..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r------~~l~~~-----~~~~~~~-r~~~~~~l~~  523 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVR------HGLNRD-----LGFSDAD-RVENIRRVAE  523 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhh------hccCCC-----CCCCHHH-HHHHHHHHHH
Confidence            46999999999999999999999998742  13467899665554      445431     1133333 3445555566


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      .+...+++|.+||+|+++..+..|+.+.++
T Consensus       524 ~a~~~~~~G~~Vivda~~~~~~~R~~~r~l  553 (632)
T PRK05506        524 VARLMADAGLIVLVSFISPFREERELARAL  553 (632)
T ss_pred             HHHHHHhCCCEEEEECCCCCHHHHHHHHHh
Confidence            888888999999999999988888765544

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.94  E-value=8.1e-09  Score=99.41  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      +.+|.+|.|.|+|||||||+++.|...+..  .+.+.++++.|.++.      .+... +..      .+. ....+..+
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~--~~~~~~~ld~d~~~~------~~~~~~~~~------~~~-~~~~~~~l   85 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE--LGVSTYLLDGDNVRH------GLCSDLGFS------DAD-RKENIRRV   85 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHh--CCCCEEEEcCEeHHh------hhhhcCCcC------ccc-HHHHHHHH
Confidence            367999999999999999999999987732  123578997777653      23221 111      111 22333444


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      ...+...+.+|.+||.+.....+++|+.+.++
T Consensus        86 ~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~  117 (198)
T PRK03846         86 GEVAKLMVDAGLVVLTAFISPHRAERQMVRER  117 (198)
T ss_pred             HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHH
Confidence            45778888899988876555567788776655

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.93  E-value=9.4e-09  Score=96.45  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             ecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 010176          218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASSLLVTAL  295 (516)
Q Consensus       218 ~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--~~y~~e~v~~~~~~~a~~la~~aL  295 (516)
                      .|+|||||||+++.|+..+       +.++|+.|.+.....+++.+.+......  ..|.... ...++       ....
T Consensus         1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-------~~~~   65 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL-NDAAF-------AMQR   65 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHH-HHHHH-------HHHH
Confidence            4999999999999999998       4589999987554446665555422111  1122111 11111       1123


Q ss_pred             hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEE
Q 010176          296 NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIEL  375 (516)
Q Consensus       296 ~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~l  375 (516)
                      ..|.+||+ +||..+.+|+.+.+                                                  .+..+.+
T Consensus        66 ~~~~~viv-~s~~~~~~r~~~~~--------------------------------------------------~~~~~~~   94 (163)
T PRK11545         66 TNKVSLIV-CSALKKHYRDLLRE--------------------------------------------------GNPNLSF   94 (163)
T ss_pred             cCCceEEE-EecchHHHHHHHHc--------------------------------------------------cCCCEEE
Confidence            45667777 89998777654321                                                  2234677


Q ss_pred             EEEecCHHHHHHHHHHhh
Q 010176          376 VGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       376 i~V~~d~elav~R~~~R~  393 (516)
                      +++.||+++..+|+..|.
T Consensus        95 v~l~a~~~~l~~Rl~~R~  112 (163)
T PRK11545         95 IYLKGDFDVIESRLKARK  112 (163)
T ss_pred             EEEECCHHHHHHHHHhcc
Confidence            999999999999999996

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.92  E-value=1.3e-08  Score=95.56  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc-CCCCChhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~-~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ++.+|+|.|+|||||||+++.|+..+..  .+.+..++|.|.++      +.+.. .......       ....+..+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~--~g~~v~~id~D~~~------~~~~~~~~~~~~~-------r~~~~~~~~~   67 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE--AGYPVEVLDGDAVR------TNLSKGLGFSKED-------RDTNIRRIGF   67 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEcCccHH------HHHhcCCCCChhh-------HHHHHHHHHH
Confidence            5779999999999999999999988732  12246789777664      33432 1111110       1112222233


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHH
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQ  315 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~  315 (516)
                      .+......|..||+|+++..+..++.
T Consensus        68 ~a~~~~~~g~~vi~~~~~~~~~~~~~   93 (175)
T PRK00889         68 VANLLTRHGVIVLVSAISPYRETREE   93 (175)
T ss_pred             HHHHHHhCCCEEEEecCCCCHHHHHH
Confidence            55556678999999998765444433

>PRK06761 hypothetical protein; Provisional

Probab=98.92  E-value=6.6e-09  Score=106.05  Aligned_cols=148  Identities=14%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCce-EEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA-VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~a-v~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +.+|++.|+|||||||+++.|++.+...  +-++ .+.++|.....|     +.+........+. .. -+.....+..+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~--g~~v~~~~~~~~~~p~d-----~~~~~~~~~eer~-~~-l~~~~~f~~~l   73 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQN--GIEVELYLEGNLDHPAD-----YDGVACFTKEEFD-RL-LSNYPDFKEVL   73 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcC--ceEEEEEecCCCCCchh-----hccccCCCHHHHH-HH-HHhhhHHHHHH
Confidence            5689999999999999999999988421  1111 234444433332     2221111111111 11 11222223457


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      .+.++..|.+||+-..-..+++|+.+.                                                     
T Consensus        74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~-----------------------------------------------------  100 (282)
T PRK06761         74 LKNVLKKGDYYLLPYRKIKNEFGDQFS-----------------------------------------------------  100 (282)
T ss_pred             HHHHHHcCCeEEEEehhhhHHHhhhhh-----------------------------------------------------
Confidence            778888899988877766666665542                                                     


Q ss_pred             ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCCCCC
Q 010176          371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGG  436 (516)
Q Consensus       371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~~~~  436 (516)
                                ++++++.|+.     -||.+|.+.+.++|.+...+|.+...+.|.+.+|||+....
T Consensus       101 ----------~~~~~~~~v~-----~~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~~~  151 (282)
T PRK06761        101 ----------DELFNDISKN-----DIYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFIQN  151 (282)
T ss_pred             ----------hhhcccceee-----eeecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCcCC
Confidence                      1111111111     17888888999999999999999999999999999876543

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.91  E-value=1e-08  Score=114.05  Aligned_cols=101  Identities=17%  Similarity=0.112  Sum_probs=70.7

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ...++|.+|+|+|+|||||||+++.|++.++. ..+..+.++|.|.+      ++.+.+..     .++.+. ....+..
T Consensus       387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~v------r~~l~ge~-----~f~~~e-r~~~~~~  453 (568)
T PRK05537        387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVV------RKHLSSEL-----GFSKED-RDLNILR  453 (568)
T ss_pred             cccCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHH------HHhccCCC-----CCCHHH-HHHHHHH
Confidence            35678999999999999999999999998853 01223688965544      55565521     122222 2333343


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHH
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lA  320 (516)
                      +...+...++.|..||+|+++..+..|+..++++
T Consensus       454 l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~ll  487 (568)
T PRK05537        454 IGFVASEITKNGGIAICAPIAPYRATRREVREMI  487 (568)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHH
Confidence            4446778889999999999999988887776664

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.89  E-value=2.3e-08  Score=94.07  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..+|.+|++.|+|||||||+++.|...+..  ...+.++++.|.+      ++.+...+.  +.    .. .........
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~~d~~------r~~~~~~~~--~~----~~-~~~~~~~~~   68 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLDGDEL------REILGHYGY--DK----QS-RIEMALKRA   68 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEecHHH------HhhcCCCCC--CH----HH-HHHHHHHHH
Confidence            357889999999999999999999988731  1235688865554      332322111  11    01 011112222


Q ss_pred             HHHHHHHhCCCcEEEeCCCC
Q 010176          289 SLLVTALNEGRDVIMDGTLS  308 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs  308 (516)
                      .+.......|..||+|++..
T Consensus        69 ~l~~~l~~~g~~VI~~~~~~   88 (176)
T PRK05541         69 KLAKFLADQGMIVIVTTISM   88 (176)
T ss_pred             HHHHHHHhCCCEEEEEeCCc
Confidence            34444557899999998874

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.88  E-value=1.5e-08  Score=103.00  Aligned_cols=139  Identities=17%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ||+|+|.|||||||+++.|.+.+.-  .....++++-|.+.        +...    .  |.....-..+...+.+...+
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~--~~~~v~~i~~~~~~--------~~~~----~--y~~~~~Ek~~R~~l~s~v~r   66 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEE--KGKEVVIISDDSLG--------IDRN----D--YADSKKEKEARGSLKSAVER   66 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHH--TT--EEEE-THHHH---------TTS----S--S--GGGHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh--cCCEEEEEcccccc--------cchh----h--hhchhhhHHHHHHHHHHHHH
Confidence            7899999999999999999987531  12345677433332        1110    0  11111011222345568888


Q ss_pred             HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI  373 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I  373 (516)
                      +|....-||+|+.|--+++|-.+..+|+..+                                              ...
T Consensus        67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~----------------------------------------------~~~  100 (270)
T PF08433_consen   67 ALSKDTIVILDDNNYIKGMRYELYCLARAYG----------------------------------------------TTF  100 (270)
T ss_dssp             HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-----------------------------------------------EE
T ss_pred             hhccCeEEEEeCCchHHHHHHHHHHHHHHcC----------------------------------------------CCE
Confidence            9999999999999999999999988887642                                              223


Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF  416 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~  416 (516)
                      -+|+|.|+.+.|+.|-..|...  ..++.+.+.++..||-.+-
T Consensus       101 c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P~  141 (270)
T PF08433_consen  101 CVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEPD  141 (270)
T ss_dssp             EEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---TT
T ss_pred             EEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCCC
Confidence            4589999999999999888642  3389999988888888653

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.88  E-value=1.9e-08  Score=95.71  Aligned_cols=92  Identities=14%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ...+|.+|.++|+|||||||+|.+|.+.+..  .+....++|.|.+|.      .|... +.+..      - ..+-.+.
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~--~G~~~y~LDGDnvR~------gL~~dLgFs~e------d-R~eniRR   83 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFA--KGYHVYLLDGDNVRH------GLNRDLGFSRE------D-RIENIRR   83 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHH--cCCeEEEecChhHhh------cccCCCCCChH------H-HHHHHHH
Confidence            3467899999999999999999999998853  244678897777654      35532 33211      1 2233344


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHH
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVE  314 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~  314 (516)
                      ....+.-...+|.-||+-..-.-++.|+
T Consensus        84 vaevAkll~daG~iviva~ISP~r~~R~  111 (197)
T COG0529          84 VAEVAKLLADAGLIVIVAFISPYREDRQ  111 (197)
T ss_pred             HHHHHHHHHHCCeEEEEEeeCccHHHHH
Confidence            4557777888887777654333333333

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.85  E-value=2.9e-08  Score=89.27  Aligned_cols=125  Identities=14%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      +|+|+|+|||||||+++.|++.++       ..+++.|.+....  .......  ...        .......+......
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~-------~~~~~~~~i~~e~--~~~~~~~--~~~--------~~~i~~~l~~~~~~   61 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG-------LPYLDTGGIRTEE--VGKLASE--VAA--------IPEVRKALDERQRE   61 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC-------CceeccccCCHHH--HHHHHHH--hcc--------cHhHHHHHHHHHHH
Confidence            478999999999999999999984       4789888553221  1111110  000        01111222223333


Q ss_pred             HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI  373 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I  373 (516)
                       +..+.++|+|+....                        |.+             .+                  .. .
T Consensus        62 -~~~~~~~Vidg~~~~------------------------~~~-------------~~------------------~~-~   84 (147)
T cd02020          62 -LAKKPGIVLEGRDIG------------------------TVV-------------FP------------------DA-D   84 (147)
T ss_pred             -HhhCCCEEEEeeeee------------------------eEE-------------cC------------------CC-C
Confidence             444568999987642                        110             00                  01 2


Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHH
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFAN  414 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~  414 (516)
                      .+|++.+|+++.+.|+..|...+++.++.+...+.++....
T Consensus        85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~  125 (147)
T cd02020          85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDE  125 (147)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            34888999999999999999776778887776665555533

>PRK01184 hypothetical protein; Provisional

Probab=98.83  E-value=2.2e-07  Score=87.89  Aligned_cols=30  Identities=30%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .+|+|+|+|||||||+++ ++++++       ..++++
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g-------~~~i~~   31 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG-------IPVVVM   31 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC-------CcEEEh
Confidence            478999999999999987 677774       477855

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.81  E-value=9e-09  Score=101.12  Aligned_cols=173  Identities=20%  Similarity=0.280  Sum_probs=92.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      .++.+|.|+|+|||||||+++.|...++.    ..+++|.-|.+-+.+..+..- ..+.. + -..++...   .+++.+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~----~~~~~I~~D~YYk~~~~~~~~-~~~~~-n-~d~p~A~D---~dLl~~   75 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV----EKVVVISLDDYYKDQSHLPFE-ERNKI-N-YDHPEAFD---LDLLIE   75 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCc----CcceEeeccccccchhhcCHh-hcCCc-C-ccChhhhc---HHHHHH
Confidence            56799999999999999999999999852    256788667665432111110 00000 0 00111100   111222


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccC-CCcccccchhhccccchhhhhhhhhccccC
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNE-DGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~-~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      .+. .|.+|..|.+- .++-..            |....   +-..+.. +=.++|++.-..++             ..+
T Consensus        76 ~L~-~L~~g~~v~~P-~yd~~~------------~~r~~---~~i~~~p~~VVIvEGi~~l~d~-------------~lr  125 (218)
T COG0572          76 HLK-DLKQGKPVDLP-VYDYKT------------HTREP---ETIKVEPNDVVIVEGILLLYDE-------------RLR  125 (218)
T ss_pred             HHH-HHHcCCccccc-ccchhc------------ccccC---CccccCCCcEEEEecccccccH-------------HHH
Confidence            333 34566663321 111100            00000   0000000 00123444333221             244


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhh-hcCcccc-hhh-----hHhHHHHHHHhHHHhhccC
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR-VNS-----QLKSHKRFANAFRNYCELV  423 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~-~gGr~Vp-~~~-----ql~s~~rf~~~~~~y~~lv  423 (516)
                      .-+.++ |||++|.+++..|.+.|.. +.||.++ +-.     ..++|..|.+...+|.+++
T Consensus       126 ~~~d~k-Ifvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADii  186 (218)
T COG0572         126 DLMDLK-IFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADII  186 (218)
T ss_pred             hhcCEE-EEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEE
Confidence            456666 8999999999999999987 6899888 222     3567788888777776554

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.80  E-value=1.6e-07  Score=91.46  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -|+|.|+|||||||+++.|++.++       +.+|+.+++
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~-------~~~is~~dl   34 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG-------IPHISTGDM   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CcEEECCcc
Confidence            378899999999999999999984       589976544

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.80  E-value=4.1e-07  Score=85.97  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |+|.|+|||||||+++.|++.+       +..+|+.|++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~-------~~~~i~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY-------GLPHISTGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-------CCeEEECcHH
Confidence            7889999999999999999998       4588977654

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01351 adk adenylate kinases

Probab=98.80  E-value=1.2e-07  Score=91.96  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=26.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |+|.|+|||||||+++.|++.+       ++.+|++++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~-------g~~~is~gd   32 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY-------GLPHISTGD   32 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-------CCCeeehhH
Confidence            6789999999999999999988       458896643

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK06547 hypothetical protein; Provisional

Probab=98.80  E-value=6e-08  Score=92.18  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ....|.+|+|.|+|||||||+++.|++.+       +..+++.|.+.
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~-------~~~~~~~d~~~   50 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAART-------GFQLVHLDDLY   50 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHh-------CCCeeccccee
Confidence            45678999999999999999999999987       45788777664

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.78  E-value=3.6e-07  Score=94.11  Aligned_cols=101  Identities=23%  Similarity=0.375  Sum_probs=66.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc-------hH-------HHHHHhcC-C-CCCh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET-------DV-------IYRALSSK-G-HHDD  271 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s-------D~-------irk~L~~~-~-~~~~  271 (516)
                      ..+.|.+|+++|+|||||||+|..|+..++.      ..+|+.|.+++.       |.       .|..+... . ..++
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~------~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~  161 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLGI------RSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPE  161 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCc
Confidence            4468999999999999999999999999954      257888888721       10       11111100 0 0011


Q ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHH
Q 010176          272 M--LQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE  314 (516)
Q Consensus       272 ~--~y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~  314 (516)
                      .  ++.=....+.+...+...+.+++.+|.++|+||....|.+..
T Consensus       162 ~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~  206 (301)
T PRK04220        162 PPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK  206 (301)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH
Confidence            1  110011122233446789999999999999999999987644

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.72  E-value=2.6e-07  Score=96.76  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----c------hHHHHH----Hhc--------CCCC-
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----T------DVIYRA----LSS--------KGHH-  269 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----s------D~irk~----L~~--------~~~~-  269 (516)
                      |.++.|+|||||||+++.|...+.. ..+-.+.+++.|++-.     .      ..++|.    +..        .+.+ 
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~   79 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGS   79 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            4678999999999999999876631 0123567899998651     0      112221    111        0000 


Q ss_pred             ---ChhhHHHHHHHHHHHH-----------------HHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhccc
Q 010176          270 ---DDMLQTAELVHQSSTD-----------------AASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYR  329 (516)
Q Consensus       270 ---~~~~y~~e~v~~~~~~-----------------~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~  329 (516)
                         +.+..+ +.+......                 ....++...++.+.-||+|++|..+++|..+..+|+...     
T Consensus        80 ~~~~~~~~~-~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~-----  153 (340)
T TIGR03575        80 ELSAPPGKT-EGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYS-----  153 (340)
T ss_pred             cccCCcccc-hhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhC-----
Confidence               000000 011111111                 123455667777888999999999999999988886531     


Q ss_pred             ccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHH
Q 010176          330 MGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSH  409 (516)
Q Consensus       330 ~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~  409 (516)
                                                               ..+.++++.||++++..|...|.    +.+|.+.+..++
T Consensus       154 -----------------------------------------~~~~~V~ld~ple~~l~RN~~R~----~~v~devie~m~  188 (340)
T TIGR03575       154 -----------------------------------------LGFCQLFLDCPVESCLLRNKQRP----VPLPDETIQLMG  188 (340)
T ss_pred             -----------------------------------------CCEEEEEEeCCHHHHHHHHhcCC----CCCCHHHHHHHH
Confidence                                                     12456899999999999998884    678888877777


Q ss_pred             HHHHH
Q 010176          410 KRFAN  414 (516)
Q Consensus       410 ~rf~~  414 (516)
                      .+|-.
T Consensus       189 ~r~E~  193 (340)
T TIGR03575       189 RKIEK  193 (340)
T ss_pred             HHhcC
Confidence            66664

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.68  E-value=5.9e-07  Score=81.64  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=28.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      |++.|+|||||||+++.|++.+++       .++++|.+.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~-------~~~~~d~~~   34 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGL-------PFVDLDELI   34 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence            688999999999999999999854       789777653

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.67  E-value=2.3e-07  Score=87.33  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=48.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCC-ChhhHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHH-DDMLQTAELVHQSSTDAASSLL  291 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~-~~~~y~~e~v~~~~~~~a~~la  291 (516)
                      .|.++|+|||||||+++.|++.++       ..++++      -.+|+++... +.+ .++...++. +...-....+..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g-------l~~vsa------G~iFR~~A~e~gmsl~ef~~~AE~-~p~iD~~iD~rq   67 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG-------LKLVSA------GTIFREMARERGMSLEEFSRYAEE-DPEIDKEIDRRQ   67 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC-------Cceeec------cHHHHHHHHHcCCCHHHHHHHHhc-CchhhHHHHHHH
Confidence            588999999999999999999995       478843      3344444432 211 122222222 223323333344


Q ss_pred             HHHHhCCCcEEEeCCCC
Q 010176          292 VTALNEGRDVIMDGTLS  308 (516)
Q Consensus       292 ~~aL~~G~sVIvDaTfs  308 (516)
                      ..... ..|||+|+-+.
T Consensus        68 ~e~a~-~~nvVlegrLA   83 (179)
T COG1102          68 KELAK-EGNVVLEGRLA   83 (179)
T ss_pred             HHHHH-cCCeEEhhhhH
Confidence            44444 77999997764

>PRK14530 adenylate kinase; Provisional

Probab=98.67  E-value=9.5e-07  Score=86.05  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|. |+|.|+|||||||+++.|++.++       ..+|+.+++
T Consensus         3 ~~~-I~i~G~pGsGKsT~~~~La~~~~-------~~~i~~g~~   37 (215)
T PRK14530          3 QPR-ILLLGAPGAGKGTQSSNLAEEFG-------VEHVTTGDA   37 (215)
T ss_pred             CCE-EEEECCCCCCHHHHHHHHHHHhC-------CeEEeccHH
Confidence            344 67789999999999999999984       488866554

>PRK07261 topology modulation protein; Provisional

Probab=98.67  E-value=9.8e-08  Score=90.26  Aligned_cols=103  Identities=18%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA  294 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~a  294 (516)
                      |+|.|+|||||||+++.|+..++       ..+++.|.+.-...    .  ...  +        .++    ..+.+..+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~-------~~~i~~D~~~~~~~----~--~~~--~--------~~~----~~~~~~~~   55 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYN-------CPVLHLDTLHFQPN----W--QER--D--------DDD----MIADISNF   55 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC-------CCeEecCCEEeccc----c--ccC--C--------HHH----HHHHHHHH
Confidence            78899999999999999998873       46787777642100    0  000  0        111    12245556


Q ss_pred             HhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEE
Q 010176          295 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE  374 (516)
Q Consensus       295 L~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~  374 (516)
                      +.++. +|+|++++...+...                                  ++.+                  . .
T Consensus        56 ~~~~~-wIidg~~~~~~~~~~----------------------------------l~~a------------------d-~   81 (171)
T PRK07261         56 LLKHD-WIIDGNYSWCLYEER----------------------------------MQEA------------------D-Q   81 (171)
T ss_pred             HhCCC-EEEcCcchhhhHHHH----------------------------------HHHC------------------C-E
Confidence            66665 999999975321111                                  1111                  1 2


Q ss_pred             EEEEecCHHHHHHHHHHhhhh-cCc
Q 010176          375 LVGVVCDAYLAVVRGIRRAIM-MKR  398 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~-gGr  398 (516)
                      ++++++|-++++.|+++|... .|+
T Consensus        82 vI~Ld~p~~~~~~R~lkR~~~~rg~  106 (171)
T PRK07261         82 IIFLNFSRFNCLYRAFKRYLKYRGK  106 (171)
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHcCC
Confidence            588999999999999999875 454

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.66  E-value=1.2e-06  Score=80.89  Aligned_cols=38  Identities=26%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..++|.|.+.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~-------~~~~d~d~~~   39 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-------YDFIDTDHLI   39 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence            4578999999999999999999999984       4788776653

>PRK13946 shikimate kinase; Provisional

Probab=98.66  E-value=8.1e-07  Score=84.69  Aligned_cols=39  Identities=28%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +...+..|++.|+|||||||+++.|++.+++       .++|+|.+
T Consensus         6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~-------~~id~D~~   44 (184)
T PRK13946          6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGL-------PFLDADTE   44 (184)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeECcCHH
Confidence            3446788999999999999999999999954       78977753

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.66  E-value=3.3e-07  Score=84.78  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +|+|.|++||||||+++.|++.++       ..+++.|+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg-------~~~~~~~~   33 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS-------LKLISAGD   33 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-------CceecHHH
Confidence            689999999999999999999884       47896543

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK04182 cytidylate kinase; Provisional

Probab=98.65  E-value=7.7e-07  Score=82.84  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=27.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +|+|.|+|||||||+++.|++.++       ..++|.|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg-------~~~id~~~   33 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG-------LKHVSAGE   33 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-------CcEecHHH
Confidence            689999999999999999999984       47887544

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.61  E-value=8.1e-07  Score=84.62  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..++++.|||||||||+++.|+..++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            45789999999999999999988763

>PRK13947 shikimate kinase; Provisional

Probab=98.60  E-value=1.8e-06  Score=80.29  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      |++.|+|||||||+++.|++.+++       .++|.|.+.
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~-------~~id~d~~~   36 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSF-------GFIDTDKEI   36 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-------CEEECchhh
Confidence            788999999999999999999955       789888754

>PRK06217 hypothetical protein; Validated

Probab=98.59  E-value=2.2e-07  Score=88.35  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      -|+|.|+|||||||+++.|++.++       ..+++.|.+..
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~-------~~~~~~D~~~~   37 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD-------IPHLDTDDYFW   37 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-------CcEEEcCceee
Confidence            488999999999999999999984       47898887753

>PRK14528 adenylate kinase; Provisional

Probab=98.58  E-value=6.4e-07  Score=85.73  Aligned_cols=44  Identities=11%  Similarity=-0.014  Sum_probs=33.1

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhHHH
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFRN  418 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~~~  418 (516)
                      +|.++||+++++.|...|....||.-. ++.+.++...|......
T Consensus       111 vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p  155 (186)
T PRK14528        111 AINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP  155 (186)
T ss_pred             EEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence            477899999999999999988788643 66676666655555543

>PRK02496 adk adenylate kinase; Provisional

Probab=98.57  E-value=1.4e-06  Score=82.49  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=26.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ++|.|+|||||||+++.|++.++       ..+++.|++
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~-------~~~i~~~~~   35 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLH-------IPHISTGDI   35 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CcEEEhHHH
Confidence            77889999999999999999884       478855443

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.57  E-value=3.3e-07  Score=88.59  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.++|++||||||+++.|.+.+       |+.++|+|.+.+
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~~-------g~~~i~~D~~~~   37 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQK-------GIPILDADIYAR   37 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-------CCeEeeCcHHHH
Confidence            68999999999999999999876       458999998853

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.56  E-value=1.2e-06  Score=84.40  Aligned_cols=36  Identities=36%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +.+|.++|++||||||+++.|.+ +       ++.+||+|.+.+
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~-------g~~~i~~D~~~~   37 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-L-------GAPVIDADAIAH   37 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEecHHHH
Confidence            46899999999999999999987 6       458999998853

>PTZ00301 uridine kinase; Provisional

Probab=98.56  E-value=1.9e-07  Score=91.62  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCc-eEEEeCcccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAFKET  256 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~-av~IdaD~ir~s  256 (516)
                      .+|.|+|+|||||||+|+.|.+.+.- ..++. +.++.-|.|-..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~-~~~~~~~~vi~~D~yy~~   47 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMA-HCGPVSIGVICEDFYYRD   47 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHh-hcCCCeEEEeCCCCCccC
Confidence            68999999999999999998776510 00122 347766766543

>PRK15453 phosphoribulokinase; Provisional

Probab=98.55  E-value=5e-07  Score=92.24  Aligned_cols=46  Identities=30%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      +++.+|.|+|.|||||||+++.|++.+..  ...++.+|+.|.|.+.|
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~--~~~~~~vi~~D~yh~yd   48 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR--ENINAAVVEGDSFHRYT   48 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeEEEecccccccC
Confidence            45678999999999999999999977632  12357899999987643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.55  E-value=1.6e-06  Score=98.35  Aligned_cols=161  Identities=17%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-ChhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ...+++|.|.||+||||+++.|++.+.|       ..+++|.| ..+..++.+.+.... .++......-.+.....+..
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~-------~~~~~~~~-~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d  285 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQW-------NGLQSRIF-IHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHD  285 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHh-------cCCCcEEE-ccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999876       23344444 333444445422111 01111111112222222223


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK  369 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~  369 (516)
                      +..-.++.|..+|+|+|......|..+.+..++..                                          ...
T Consensus       286 ~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~------------------------------------------~~~  323 (664)
T PTZ00322        286 MTTFICKTDGVAVLDGTNTTHARRMALLRAIRETG------------------------------------------LIR  323 (664)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHcC------------------------------------------CCc
Confidence            44445667889999999999877777666654320                                          222


Q ss_pred             CceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhc
Q 010176          370 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE  421 (516)
Q Consensus       370 gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~  421 (516)
                      |..|.++-+.|+....+.|.+.|......+.+++...+.++++...-..|..
T Consensus       324 ~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~Ye~  375 (664)
T PTZ00322        324 MTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAVYKS  375 (664)
T ss_pred             cCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence            4557677777877777888888876555555554444444444444444443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.55  E-value=1.9e-07  Score=81.83  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=28.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|+|.|+|||||||+++.|++.++       ..+|+.|++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~-------~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG-------FPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT-------CEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-------CeEEEecce
Confidence            589999999999999999999984       488877774

...

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.54  E-value=1.3e-06  Score=85.16  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=31.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.|.+|.++|++||||||+++.|.+ +       |+.++|+|.+.
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~-------g~~v~d~D~i~   39 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-------GCELFEADRVA   39 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeccHHH
Confidence            4578999999999999999999986 5       45899999764

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=1.7e-06  Score=86.64  Aligned_cols=136  Identities=18%  Similarity=0.256  Sum_probs=88.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-C----------------CC-
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G----------------HH-  269 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~----------------~~-  269 (516)
                      .++.|.+|++||+||.||||+|..++.+++.      -.+|.+|.+|+-  .|+-+.+. .                .+ 
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI------~~visTD~IREv--lR~ii~~~l~PtLh~Ssy~Awkalr~~~~  156 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGI------RSVISTDSIREV--LRKIISPELLPTLHTSSYDAWKALRDPTD  156 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCC------ceeecchHHHHH--HHHhCCHHhcchhhHhHHHHHHHhcCCCC
Confidence            5678999999999999999999999999976      267877777642  33332211 0                00 


Q ss_pred             ChhhHHHHHHH-HHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh
Q 010176          270 DDMLQTAELVH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE  348 (516)
Q Consensus       270 ~~~~y~~e~v~-~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~  348 (516)
                      ..+.-+.-.-| +.+.-.....+++|+++|.|+|+|++..-|.+.+                                  
T Consensus       157 ~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~----------------------------------  202 (299)
T COG2074         157 ENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIK----------------------------------  202 (299)
T ss_pred             CcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeecccccc----------------------------------
Confidence            01111111111 2233446789999999999999999998663211                                  


Q ss_pred             hccccchhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccch
Q 010176          349 QVKEGEEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV  402 (516)
Q Consensus       349 ~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~  402 (516)
                         +.             .. ++.+.+++|. .|+++...|.-.|...+-..=|-
T Consensus       203 ---~~-------------~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~  240 (299)
T COG2074         203 ---EE-------------AL-GNNVFMFMLYIADEELHRERFYDRIRYTHASRPG  240 (299)
T ss_pred             ---Hh-------------hh-ccceEEEEEEeCCHHHHHHHHHHHHHHHhccCch
Confidence               11             11 3335555554 69999999999999776443343

>PRK04040 adenylate kinase; Provisional

Probab=98.53  E-value=1.1e-06  Score=84.65  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=30.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |.+|++.|+|||||||+++.|++.+.     .+..+++.+++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~   38 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDV   38 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchH
Confidence            78999999999999999999999882     14567766554

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.52  E-value=5.3e-06  Score=82.21  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-----ChhhHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQSS  283 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-----~~~~y~~e~v~~~~  283 (516)
                      ...+.+|+|.|+||.|||++|+.|..-+.|.  +-.+.++|..++      |+.+.+....     +....+... .++.
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~--g~~~~vFn~g~y------RR~~~~~~~~~~ff~p~n~~~~~~-R~~~   79 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWL--GVKTKVFNVGDY------RRKLSGAPQDAEFFDPDNEEAKKL-REQI   79 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHT--T--EEEEEHHHH------HHHHHSS-S-GGGGSTT-HHHHHH-HHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc--CCCcceeecccc------eecccccccccccCCCCChHHHHH-HHHH
Confidence            4568899999999999999999999888773  234566644444      3334443111     111122222 4554


Q ss_pred             HHHH-HHHHHHHH-hCCCcEEEeCCCCChHHHHHHHHHH
Q 010176          284 TDAA-SSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMA  320 (516)
Q Consensus       284 ~~~a-~~la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lA  320 (516)
                      ...+ ..++.-.. ..|.--|+|||.++.+.|..+.+..
T Consensus        80 a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~  118 (222)
T PF01591_consen   80 AKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERF  118 (222)
T ss_dssp             HHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            4433 44444444 3677889999999999998877664

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK13948 shikimate kinase; Provisional

Probab=98.51  E-value=2.2e-06  Score=82.39  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.|..|++.|+|||||||+++.|++.+++       .+||+|.+.
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D~~i   45 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTDRYI   45 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECCHHH
Confidence            456899999999999999999999999954       789888553

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.49  E-value=5.8e-06  Score=77.16  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|++.|+|||||||+++.|++.+++       .++|.|.+.
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~-------~~~d~D~~~   37 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGY-------RFVDTDQWL   37 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEccHHH
Confidence            4777899999999999999999854       789776654

>TIGR00152 dephospho-CoA kinase

Probab=98.49  E-value=7.9e-07  Score=84.76  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=29.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.++|++||||||+++.|.+..       ++.++|+|.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~~   34 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKIA   34 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHHH
Confidence            37899999999999999998875       35899999885

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK03839 putative kinase; Provisional

Probab=98.49  E-value=3.3e-07  Score=86.44  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|++.|+|||||||+++.|++.++       ..++|.|++-
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~-------~~~id~d~~~   35 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG-------YEYVDLTEFA   35 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhhhh
Confidence            488899999999999999999984       4889877653

>PRK08233 hypothetical protein; Provisional

Probab=98.48  E-value=2.2e-06  Score=80.02  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++.+|.|.|+|||||||+++.|++.++
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            468999999999999999999999884

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.48  E-value=1.8e-06  Score=83.80  Aligned_cols=34  Identities=32%  Similarity=0.527  Sum_probs=29.2

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+|.++|++||||||+++.|.. .       |+.+||+|.+.
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~-------g~~vid~D~i~   35 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-E-------GFLIVDADQVA   35 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeCcHHH
Confidence            3689999999999999999986 4       45899999763

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.48  E-value=6.5e-07  Score=86.09  Aligned_cols=27  Identities=33%  Similarity=0.673  Sum_probs=24.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..|.+|+|+|||||||||+++.|.++.
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999999998875

>PRK13973 thymidylate kinase; Provisional

Probab=98.47  E-value=2.3e-05  Score=76.60  Aligned_cols=94  Identities=22%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCC-CCChhhHHHHHHHHH-HHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG-HHDDMLQTAELVHQS-STDAA  287 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~-~~~~~~y~~e~v~~~-~~~~a  287 (516)
                      ++.+|++-|+.||||||.++.|++.+.-  .+..++.. +|+.-.-.+.+|+.+.+.. ...++ ++....+.. -.+.+
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~--~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~-~~~~ll~~a~r~~~~   78 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRA--AGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGP-RMEALLFAAARDDHV   78 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEECCCCCchHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHH
Confidence            3689999999999999999999998832  11122222 3332222445565555421 10011 111111111 11223


Q ss_pred             HHHHHHHHhCCCcEEEeCCC
Q 010176          288 SSLLVTALNEGRDVIMDGTL  307 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTf  307 (516)
                      ...+..+|+.|..||.|--+
T Consensus        79 ~~~i~~~l~~g~~Vi~DRy~   98 (213)
T PRK13973         79 EEVIRPALARGKIVLCDRFI   98 (213)
T ss_pred             HHHHHHHHHCCCEEEEcchh
Confidence            45688899999999999644

>PLN02348 phosphoribulokinase

Probab=98.47  E-value=2.2e-06  Score=91.17  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-------------CCceEEEeCcccccch
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFKETD  257 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-------------~~~av~IdaD~ir~sD  257 (516)
                      ...|.+|.|+|+|||||||+++.|...++....             ...+.+|.-|+|...|
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~d  107 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLD  107 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCC
Confidence            467999999999999999999999998842100             1245788889886544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.47  E-value=2.5e-06  Score=82.70  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.++|++||||||+++.|.. .       |..++|+|.+.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~i~~   34 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-L-------GAFGISADRLAK   34 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-C-------CCEEEecchHHH
Confidence            478999999999999998864 4       458999999853

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.46  E-value=2.1e-06  Score=83.02  Aligned_cols=42  Identities=29%  Similarity=0.558  Sum_probs=34.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+|.+|.|+|+|||||||+++.|...+.    .....+|+.|.+-.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcccc
Confidence            4789999999999999999999999873    23567888888743

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.46  E-value=6e-06  Score=81.36  Aligned_cols=50  Identities=20%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEE-EeCcccccchHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VEADAFKETDVI  259 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~-IdaD~ir~sD~i  259 (516)
                      ...+|.++.+.|+|||||||+++.|+..+...  .....+ |.-|.+...+..
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~~~   79 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDNAV   79 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCHHH
Confidence            45679999999999999999999999877421  122334 777887655444

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.45  E-value=2.6e-06  Score=80.11  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+++|.|+|||||||+++.|+..++
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.45  E-value=8.4e-07  Score=90.04  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +|.++|+|||||||+++.+.+.+..  .+..+.+|+.|.|.+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~--~g~~v~vI~~D~yyr~   41 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAR--EGIHPAVVEGDSFHRY   41 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--cCCceEEEeccccccC
Confidence            4788999999999999999987732  1224689999998764

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08356 hypothetical protein; Provisional

Probab=98.44  E-value=1.3e-05  Score=77.05  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+|+++|+|||||||+++.|. +.+       +.+|...+
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g-------~~~is~~~   37 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKG-------FCRVSCSD   37 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC-------CcEEeCCC
Confidence            578999999999999999995 453       35665544

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.43  E-value=3.1e-05  Score=73.83  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.+|++.|++||||||+++.|.+.+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999999876

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.43  E-value=2.1e-06  Score=83.95  Aligned_cols=38  Identities=26%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..|..|.++|++||||||+++.|.+.++       +.++|+|.+.
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg-------~~vidaD~i~   41 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLN-------LNVVCADTIS   41 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcC-------CeEEeccHHH
Confidence            4688999999999999999999998774       4789898874

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.43  E-value=2.5e-05  Score=73.36  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+|++.|++||||||+++.|++.+
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999887

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.43  E-value=6.2e-07  Score=86.18  Aligned_cols=86  Identities=26%  Similarity=0.430  Sum_probs=55.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc--------------cCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA  276 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~--------------~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~  276 (516)
                      ++.|+++.||||+||||+.+.|.+...+              ...+.++.+++.+       +++.+...+   ..++++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~-------EF~~~i~~~---~fLE~a   72 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEE-------EFEELIERD---EFLEWA   72 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHH-------HHHHHHhcC---CcEEEE
Confidence            6889999999999999999999987633              1122234445333       344443331   222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEEeCCC
Q 010176          277 ELVHQSSTDAASSLLVTALNEGRDVIMDGTL  307 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~sVIvDaTf  307 (516)
                      +. +...|.....-++.+++.|.+||+|-.+
T Consensus        73 ~~-~gnyYGT~~~~ve~~~~~G~~vildId~  102 (191)
T COG0194          73 EY-HGNYYGTSREPVEQALAEGKDVILDIDV  102 (191)
T ss_pred             EE-cCCcccCcHHHHHHHHhcCCeEEEEEeh
Confidence            33 3334444556888999999999999655

>PRK13808 adenylate kinase; Provisional

Probab=98.42  E-value=1.3e-06  Score=91.15  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |+|.|||||||||+++.|++.+       +.++|+.+++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~y-------gl~~is~gdl   34 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQY-------GIVQLSTGDM   34 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-------CCceecccHH
Confidence            6779999999999999999998       4589976554

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.42  E-value=2.6e-06  Score=80.89  Aligned_cols=34  Identities=35%  Similarity=0.563  Sum_probs=29.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.++|++||||||+++.|.+ +       |+.+|++|.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~~~~   34 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L-------GIPVIDADKIAH   34 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C-------CCCEEecCHHHH
Confidence            478999999999999999987 6       458999998753

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.41  E-value=5.7e-07  Score=84.40  Aligned_cols=24  Identities=38%  Similarity=0.771  Sum_probs=22.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+|++.|||||||||+++.|+...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            578999999999999999999865

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK08118 topology modulation protein; Reviewed

Probab=98.38  E-value=1.8e-06  Score=81.50  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |+|.|+|||||||+|+.|++.++       ..+++.|.+
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l~-------~~~~~lD~l   35 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLN-------IPVHHLDAL   35 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CCceecchh
Confidence            78889999999999999999984       467766654

>TIGR00017 cmk cytidylate kinase

Probab=98.38  E-value=1.2e-05  Score=79.36  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.+|.|.||+||||||+++.|++++++       .+++++.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~-------~~~~~g~~~   37 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGY-------AYLDSGAMY   37 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC-------ceeeCchHH
Confidence            568999999999999999999999854       788776654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.37  E-value=2.2e-06  Score=82.21  Aligned_cols=41  Identities=22%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCC--CceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAA--TNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~--~~av~IdaD~ir  254 (516)
                      +|.|+|+|||||||+|+.|...+.-.+..  ....++..|.+-
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            58899999999999999999988421100  024567667664

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00625 shikimate kinase; Provisional

Probab=98.36  E-value=2.2e-05  Score=74.86  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=29.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|++.|.|||||||+++.|++.++       ..++|.|.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~-------~~~id~D~~   34 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS-------LPFFDTDDL   34 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CCEEEhhHH
Confidence            488999999999999999999984       489988765

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.35  E-value=8.9e-06  Score=77.39  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +|++.|++||||||+++.|.+.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~   24 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLG   24 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998763

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.29  E-value=2.6e-05  Score=74.88  Aligned_cols=154  Identities=21%  Similarity=0.270  Sum_probs=84.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ....|.+|++-|+|||||-|....+++.++|       .+|.+.     |.+|.+....+.        +.         
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~f-------tHlSaG-----dLLR~E~~~~gs--------e~---------   54 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGF-------THLSAG-----DLLRAEIASAGS--------ER---------   54 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCc-------eeecHH-----HHHHHHHccccC--------hH---------
Confidence            4567888888999999999999999999955       899443     334444433210        00         


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ..++...+++|.-|=.+-|.+      .+.+--++.+..     .||       .|+.|...++..      ..+++...
T Consensus        55 g~~I~~~i~~G~iVP~ei~~~------LL~~am~~~~~~-----~~f-------LIDGyPR~~~q~------~~fe~~i~  110 (195)
T KOG3079|consen   55 GALIKEIIKNGDLVPVEITLS------LLEEAMRSSGDS-----NGF-------LIDGYPRNVDQL------VEFERKIQ  110 (195)
T ss_pred             HHHHHHHHHcCCcCcHHHHHH------HHHHHHHhcCCC-----CeE-------EecCCCCChHHH------HHHHHHhc
Confidence            124455555555444433321      000000010000     012       223344433332      22221111


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF  416 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~  416 (516)
                      ..+ . -+++++|+.|.++.|+..|....+|... ++++.++.+-|..+-
T Consensus       111 ~~~-~-fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t  158 (195)
T KOG3079|consen  111 GDP-D-FVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKST  158 (195)
T ss_pred             CCC-C-EEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcc
Confidence            111 1 2378899999999999999987666554 666666655555443

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.28  E-value=5e-06  Score=81.18  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=31.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +.+|.++|.+||||||+++.+.+ +       |+.+||+|.+.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~-------G~~vidaD~v~r   37 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-L-------GFPVIDADDVAR   37 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-c-------CCeEEEccHHHH
Confidence            57899999999999999999998 6       458999999875

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.28  E-value=4.8e-06  Score=79.89  Aligned_cols=33  Identities=36%  Similarity=0.565  Sum_probs=28.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.++|+.||||||+++.|.+ +       |+.++|+|.+.
T Consensus         2 iIglTG~igsGKStv~~~l~~-~-------G~~vidaD~i~   34 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-L-------GFPVIDADEIA   34 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-T-------T-EEEEHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-C-------CCCEECccHHH
Confidence            688999999999999999987 5       56899999875

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.27  E-value=0.00014  Score=69.15  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=24.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.+|++.|++||||||+++.|++.+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02674 adenylate kinase

Probab=98.27  E-value=1.5e-05  Score=80.17  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.-|++.|+|||||||+++.|++.++       ..+|+++++
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~-------~~his~Gdl   65 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC-------LCHLATGDM   65 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC-------CcEEchhHH
Confidence            44577899999999999999999984       488966443

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.26  E-value=9.1e-06  Score=81.61  Aligned_cols=36  Identities=33%  Similarity=0.526  Sum_probs=31.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+|.++|+.||||||+++.|.+..       |+.+||+|.+.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~-------G~~viDaD~iar   37 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEH-------HIEVIDADLVVR   37 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-------CCeEEehHHHHH
Confidence            368899999999999999999876       458999999853

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.25  E-value=1.8e-06  Score=75.47  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|+|+|||||||+++.|.+.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999985

...

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.25  E-value=3.5e-05  Score=72.92  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +..|++.|+|||||||+++.|+..++       ..++|+|..
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~-------~~~vd~D~~   38 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE   38 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC-------CcEEECCch
Confidence            55689999999999999999999884       478988864

>PRK07667 uridine kinase; Provisional

Probab=98.24  E-value=1.2e-05  Score=77.49  Aligned_cols=43  Identities=14%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+.+|.|+|+|||||||+++.|.+.+.-  .+.+..+++.|.+-
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~--~~~~~~~i~~Dd~~   57 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQ--EGIPFHIFHIDDYI   57 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEEcCccc
Confidence            45589999999999999999999987731  12356788888864

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.24  E-value=2.2e-06  Score=81.73  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +|.|+|+|||||||+++.|.+.+..  .+.+..+|+.|.|-..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~--~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRV--NGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEehhhcccC
Confidence            5789999999999999999988731  1236788988877653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.23  E-value=7.4e-06  Score=78.54  Aligned_cols=27  Identities=37%  Similarity=0.714  Sum_probs=24.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.+|+|.|+|||||||+++.|+..+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356899999999999999999999876

>PRK07429 phosphoribulokinase; Provisional

Probab=98.20  E-value=1.7e-05  Score=82.84  Aligned_cols=46  Identities=28%  Similarity=0.362  Sum_probs=36.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      ...+|.+|.|+|+|||||||+++.|+..++.    .+..++..|.+...+
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~----~~~~vi~~Dd~~~~~   49 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGE----ELVTVICTDDYHSYD   49 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhcc----CceEEEEecccccCC
Confidence            4568999999999999999999999988742    234577788875433

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.20  E-value=3.7e-05  Score=79.52  Aligned_cols=38  Identities=24%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...++..|++.|+|||||||+++.|++.+++       .++|.|.
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~-------~~id~D~  166 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGV-------PFVELNR  166 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEeHHH
Confidence            4567788999999999999999999999954       6785553

>PRK13949 shikimate kinase; Provisional

Probab=98.20  E-value=9.7e-05  Score=69.86  Aligned_cols=32  Identities=34%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|+|||||||+++.|++.+++       .++|.|.+
T Consensus         4 I~liG~~GsGKstl~~~La~~l~~-------~~id~D~~   35 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELGL-------SFIDLDFF   35 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC-------CeecccHH
Confidence            788899999999999999999854       78977754

>TIGR00235 udk uridine kinase

Probab=98.19  E-value=2.3e-05  Score=75.94  Aligned_cols=42  Identities=26%  Similarity=0.498  Sum_probs=33.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ++.+.+|.|.|+|||||||+++.|...+..    .+..++..|.+-
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~----~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK----LEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc----cCCeEecccccc
Confidence            466789999999999999999999987631    245678777763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN02422 dephospho-CoA kinase

Probab=98.18  E-value=2.7e-05  Score=77.72  Aligned_cols=33  Identities=36%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.++|++||||||+++.|. ++       |+.++|+|++.
T Consensus         3 ~igltG~igsGKstv~~~l~-~~-------g~~~idaD~~~   35 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SS-------GIPVVDADKVA   35 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HC-------CCeEEehhHHH
Confidence            68999999999999999998 45       45899999885

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.18  E-value=5.1e-05  Score=74.43  Aligned_cols=58  Identities=9%  Similarity=-0.085  Sum_probs=34.6

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN  432 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn  432 (516)
                      +|++++||+.+..|...|....-..++.+.+.+-+..+.+.+.......+.+.++|.|
T Consensus       146 ~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~  203 (219)
T cd02030         146 VIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWT  203 (219)
T ss_pred             EEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence            4788999999999998886432223555544444555544443211223566677743

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.17  E-value=9.9e-06  Score=78.78  Aligned_cols=28  Identities=29%  Similarity=0.587  Sum_probs=25.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .+.+|.+|++.|||||||||+++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4568999999999999999999999764

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.16  E-value=2.3e-05  Score=79.92  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      ++.|+|+|||||||+++.|...+..    .+..+|..|.+...+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~----~~~~vi~~Dd~~~~~   40 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGS----DLVTVICLDDYHSLD   40 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCC----CceEEEECcccccCC
Confidence            4778999999999999999987742    245678888886543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.15  E-value=6.8e-06  Score=91.27  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+.+|.|+|+|||||||+++.|+..+.      ++.+|.-|.+.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~  101 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN  101 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence            4578999999999999999999998762      45677777775

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.15  E-value=3.5e-05  Score=79.87  Aligned_cols=84  Identities=18%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cchH-----HHHHHhcCCCC------ChhhHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETDV-----IYRALSSKGHH------DDMLQT  275 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD~-----irk~L~~~~~~------~~~~y~  275 (516)
                      .+|.+|+|+||+||||||++..|++.+       +..+|++|.+.   .-|.     --.++.+..|+      +...++
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s   74 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYS   74 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhccc
Confidence            357899999999999999999999998       44789888842   1110     01111121111      111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEe
Q 010176          276 AELVHQSSTDAASSLLVTALNEGRDVIMD  304 (516)
Q Consensus       276 ~e~v~~~~~~~a~~la~~aL~~G~sVIvD  304 (516)
                      ..    ...+.+...++.+++.|...|++
T Consensus        75 ~~----~f~~~a~~~i~~i~~~gk~pIlv   99 (307)
T PRK00091         75 VA----DFQRDALAAIADILARGKLPILV   99 (307)
T ss_pred             HH----HHHHHHHHHHHHHHhCCCCEEEE
Confidence            22    23344567888889999987775

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.14  E-value=3.2e-05  Score=74.07  Aligned_cols=37  Identities=27%  Similarity=0.584  Sum_probs=30.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.|.|+|||||||+++.|...+.    ...+.++..|.+-
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence            478999999999999999998762    2356788888765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.11  E-value=1.3e-05  Score=79.08  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +|.|+|+|||||||+++.|+..+........+.+|.-|.+-..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~   43 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP   43 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence            4778999999999999999987731001235678888887544

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.10  E-value=7e-05  Score=74.53  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.-|++.|+|||||||+++.|++.++       ..+|+.|++-
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g-------~~~is~gdll   41 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKEN-------LKHINMGNIL   41 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC-------CcEEECChHH
Confidence            355588899999999999999999984       5899777653

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.09  E-value=1.1e-05  Score=78.39  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .++-++|..||||||+++.+. .+       |..+||+|.+.+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~-------G~~vIDaD~vaR   36 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-AL-------GIPVIDADVVAR   36 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-Hc-------CCcEecHHHHHH
Confidence            367889999999999999987 55       458999998764

>smart00072 GuKc Guanylate kinase homologues

Probab=98.08  E-value=2.3e-05  Score=74.63  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=23.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +++|++.|||||||||+++.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            5789999999999999999999885

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.07  E-value=1.3e-05  Score=77.52  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.|+|+|||||||+++.|++.+.      ++.+|+.|.|-.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~------~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP------NCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC------CCeEEccccccC
Confidence            478999999999999999999872      468898888753

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00018  Score=68.76  Aligned_cols=33  Identities=33%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      |++.|+|||||||+.+.|++.+       +..++|.|..-
T Consensus         5 IvLiG~mGaGKSTIGr~LAk~L-------~~~F~D~D~~I   37 (172)
T COG0703           5 IVLIGFMGAGKSTIGRALAKAL-------NLPFIDTDQEI   37 (172)
T ss_pred             EEEEcCCCCCHhHHHHHHHHHc-------CCCcccchHHH
Confidence            6778999999999999999999       45899888764

>PRK14526 adenylate kinase; Provisional

Probab=98.07  E-value=4.3e-05  Score=75.06  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|+|||||||+++.|++.++       ..+|+++++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~-------~~~is~G~l   34 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN-------YYHISTGDL   34 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CceeecChH
Confidence            67799999999999999999884       477865544

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.07  E-value=7.2e-05  Score=82.46  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=32.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.+|.|.|||||||||+++.|++.++       ..++|.|.+-+
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~-------~~~~d~g~~YR  320 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG-------LLYLDTGAMYR  320 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEecCCceeh
Confidence            578899999999999999999999994       58998776644

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.05  E-value=0.00016  Score=71.65  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+.+|.+.|++||||||+++.|++.++       ..+++.|.+
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~-------~~~~~~~~~   38 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLG-------FHYLDTGAM   38 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCchh
Confidence            468899999999999999999999994       478876664

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.01  E-value=7.6e-05  Score=76.74  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..+.+|+|+|+|||||||+++.|..
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999963

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.01  E-value=0.00031  Score=64.41  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=24.4

Q ss_pred             EecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       217 i~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |.|||||||||+++.|++++       +.++|++.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~-------~~~~is~~~   29 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY-------GLVHISVGD   29 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH-------TSEEEEHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc-------CcceechHH
Confidence            46999999999999999998       458995533

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.00  E-value=0.00024  Score=67.23  Aligned_cols=55  Identities=15%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             EEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCC
Q 010176          376 VGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNA  433 (516)
Q Consensus       376 i~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~  433 (516)
                      +++++||+++..|...|..   ..-.....+..++++.+.+......-+++.+-|++.
T Consensus       123 ~~Ldv~pe~~~~R~~~r~~---~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~  177 (186)
T PF02223_consen  123 FFLDVDPEEALKRIAKRGE---KDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASR  177 (186)
T ss_dssp             EEEECCHHHHHHHHHHTSS---TTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS
T ss_pred             EEEecCHHHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence            7889999999999999986   222233334445555555554444557888888653

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.99  E-value=6.4e-05  Score=77.37  Aligned_cols=54  Identities=15%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR  261 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk  261 (516)
                      ..+.|.+|.|+|+|||||||+++.|..-+......+.+.++..|.|......++
T Consensus        58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~  111 (290)
T TIGR00554        58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLK  111 (290)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHH
Confidence            346799999999999999999988866542101123467788888765433433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK05439 pantothenate kinase; Provisional

Probab=97.98  E-value=0.00011  Score=76.36  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      ....|.+|.|+|+|||||||+++.|...+.....+..+.+|..|.|-...
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~  131 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN  131 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence            45679999999999999999999998865311112357789888885443

>PRK13975 thymidylate kinase; Provisional

Probab=97.98  E-value=0.00024  Score=67.52  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.+|++.|++||||||+++.|++.++
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999999984

>PRK13974 thymidylate kinase; Provisional

Probab=97.97  E-value=0.00069  Score=66.13  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..+|++-|++||||||.++.|.+.+.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999998874

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.92  E-value=0.00033  Score=77.02  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      |++.|+|||||||+++.|++.++       ..++|+|.+.
T Consensus         3 I~l~G~~GsGKSTv~~~La~~lg-------~~~id~D~~i   35 (488)
T PRK13951          3 IFLVGMMGSGKSTIGKRVSEVLD-------LQFIDMDEEI   35 (488)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-------CeEEECcHHH
Confidence            78899999999999999999984       4899777653

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.91  E-value=0.00022  Score=68.36  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=27.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      |+|-|+|||||||+|+.|++.+       +..+|+.+++-
T Consensus         3 iiilG~pGaGK~T~A~~La~~~-------~i~hlstgd~~   35 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKL-------GLPHLDTGDIL   35 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-------CCcEEcHhHHh
Confidence            6778999999999999999998       45899765553

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.91  E-value=0.00023  Score=80.98  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..|.+-||+||||||+++.|++++++       .++|+|.+-+.
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~-------~~~~~~~~~~~  479 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGY-------HYLDSGALYRL  479 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCC-------eEecHHHhhhH
Confidence            36888999999999999999999954       88966665443

>PLN02459 probable adenylate kinase

Probab=97.88  E-value=0.00036  Score=70.86  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=28.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +|.-|++.|+|||||||+++.|++.++       ..+|++.+
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~-------~~~is~gd   62 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLG-------VPHIATGD   62 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeCcH
Confidence            345577789999999999999999984       48885544

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.84  E-value=0.00076  Score=62.72  Aligned_cols=26  Identities=38%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          221 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       221 sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |||||||+++.|++.+++       .++|.|.+
T Consensus         1 ~GsGKStvg~~lA~~L~~-------~fiD~D~~   26 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGR-------PFIDLDDE   26 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTS-------EEEEHHHH
T ss_pred             CCCcHHHHHHHHHHHhCC-------CccccCHH
Confidence            799999999999999965       89977765

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.81  E-value=0.00017  Score=77.15  Aligned_cols=34  Identities=44%  Similarity=0.635  Sum_probs=29.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .|.++|++||||||+++.|++ +       |+.+||+|.+.+
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~-------G~~vidaD~i~~   36 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-L-------GAVVVDADVLAR   36 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C-------CCeEEehHHHHH
Confidence            488999999999999999986 5       458999998854

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.81  E-value=0.0008  Score=74.92  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|++.|.|||||||+++.|++.+++       .+||.|..
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~-------~fiD~D~~   40 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRL-------PFADADVE   40 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCC-------CEEEchHH
Confidence            44666799999999999999999965       79988864

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.79  E-value=3.8e-05  Score=72.93  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++++|++.||+||||||+++.|.+.+
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~   26 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEF   26 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            36789999999999999999999876

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PLN02924 thymidylate kinase

Probab=97.79  E-value=0.00064  Score=67.25  Aligned_cols=92  Identities=24%  Similarity=0.233  Sum_probs=52.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe-Ccc-cccchHHHHHHhcCCCCCh----hhHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADA-FKETDVIYRALSSKGHHDD----MLQTAELVHQ  281 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id-aD~-ir~sD~irk~L~~~~~~~~----~~y~~e~v~~  281 (516)
                      +++++.+|++.|+.||||||+++.|.+.+...  +..++++. ++. -.-...+++-+.+......    ..+++.+ .+
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~--g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR-~~   88 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGL--GVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANR-WE   88 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HH
Confidence            45678899999999999999999999988531  11222221 110 0001124444433211111    1122222 11


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCC
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTL  307 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTf  307 (516)
                      .     ...+..+|+.|..||.|--+
T Consensus        89 ~-----~~~I~pal~~g~vVI~DRy~  109 (220)
T PLN02924         89 K-----RSLMERKLKSGTTLVVDRYS  109 (220)
T ss_pred             H-----HHHHHHHHHCCCEEEEccch
Confidence            1     24688899999999999654

>PRK14529 adenylate kinase; Provisional

Probab=97.78  E-value=0.00014  Score=72.27  Aligned_cols=24  Identities=29%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~  238 (516)
                      |+|.|+|||||||+++.|++.++.
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~   26 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDL   26 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            677999999999999999999843

>PRK07933 thymidylate kinase; Validated

Probab=97.76  E-value=0.0023  Score=62.75  Aligned_cols=93  Identities=19%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eC--cccccchHHHHHHhcC-CCCChhhHHHHHHHHHH-HHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EA--DAFKETDVIYRALSSK-GHHDDMLQTAELVHQSS-TDAA  287 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-da--D~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~-~~~a  287 (516)
                      .+|.+-|+-||||||+++.|.+.+...  +..++++ .|  +.-.-.+.+++.+.+. +......++....+... ...+
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~--g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~   78 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEAR--GRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGAR   78 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence            378999999999999999999988431  1222322 22  1111124466656542 11000011111101100 0111


Q ss_pred             HHHHHHHHhCCCcEEEeCCCC
Q 010176          288 SSLLVTALNEGRDVIMDGTLS  308 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs  308 (516)
                       ..+..+|+.|..||.|-.+.
T Consensus        79 -~~I~p~l~~g~~VI~DRy~~   98 (213)
T PRK07933         79 -DELAGLLAAHDVVILDRYVA   98 (213)
T ss_pred             -HHHHHHHhCCCEEEECCccc
Confidence             34677889999999996554

>PLN02772 guanylate kinase

Probab=97.71  E-value=0.00036  Score=74.49  Aligned_cols=84  Identities=18%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc--------------cC--CCCceEEEeCcccccchHHHHHHhcCCCCChhhH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SG--AATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ  274 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~--------------~~--~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y  274 (516)
                      ..++++++||||+||||+.+.|.+....              ++  .+.++.++       +...+..+...+   .+++
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-------s~eeFe~~i~~g---~FlE  203 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-------ERSVMEKEIKDG---KFLE  203 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-------CHHHHHHHHHhC---ccce
Confidence            5579999999999999999999886521              00  01112222       112222222211   1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176          275 TAELVHQSSTDAASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       275 ~~e~v~~~~~~~a~~la~~aL~~G~sVIvDa  305 (516)
                      ..+. +...|....+.++..+++|+.+|+|-
T Consensus       204 ~~e~-~Gn~YGTsk~~V~~vl~~Gk~vILdL  233 (398)
T PLN02772        204 FASV-HGNLYGTSIEAVEVVTDSGKRCILDI  233 (398)
T ss_pred             eeee-cCccccccHHHHHHHHHhCCcEEEeC
Confidence            2222 44455555668889999999999993

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.67  E-value=0.00074  Score=77.47  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .|.|.|||||||||+++.|++.+++       .++|+..+-+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~-------~~~~~g~~~r   37 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGY-------AYLDTGAMYR   37 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-------cEeecCcEeH
Confidence            6889999999999999999999954       7787766543

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.00032  Score=65.83  Aligned_cols=43  Identities=16%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+...|.|+|+|||||||+|-+|.+.+.-  .+.-..++|.|.+|
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~q--rgkl~Y~LDGDNvR   71 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQ--RGKLTYILDGDNVR   71 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHh--cCceEEEecCcccc
Confidence            45678999999999999999999887742  23345788888886

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.65  E-value=0.0021  Score=63.51  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...|.|=||+||||||+++.|++++++       .++|+-.
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~-------~yldTGa   37 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGF-------HYLDTGA   37 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCC-------CeecccH
Confidence            367899999999999999999999955       8895543

>PLN02842 nucleotide kinase

Probab=97.58  E-value=0.0012  Score=72.67  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=25.4

Q ss_pred             EEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          216 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       216 li~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|.|+|||||||+++.|++.++       ..+|+++++
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg-------~~hIs~gdL   31 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG-------LVHISTGDL   31 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC-------CCEEEccHH
Confidence            3689999999999999999984       478865543

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.55  E-value=0.0028  Score=62.46  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=24.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      -.+|+|+|+-|+||||+|+.|+++++.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~   30 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGF   30 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCC
Confidence            357999999999999999999999953

>PLN02748 tRNA dimethylallyltransferase

Probab=97.50  E-value=0.00029  Score=76.89  Aligned_cols=88  Identities=25%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc---cccchHH-----HHHHhcCCCC------ChhhHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA---FKETDVI-----YRALSSKGHH------DDMLQT  275 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~---ir~sD~i-----rk~L~~~~~~------~~~~y~  275 (516)
                      +.+.+|+|.||+||||||++..|++.+       +..+|++|.   ++..|..     ..+..+..|+      ++..|+
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ys   92 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFT   92 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCc
Confidence            467799999999999999999999998       458999995   3333311     1112222222      223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCCC
Q 010176          276 AELVHQSSTDAASSLLVTALNEGR-DVIMDGTLS  308 (516)
Q Consensus       276 ~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTfs  308 (516)
                      ...    ....+...+....+.|+ +||+=||..
T Consensus        93 v~~----F~~~A~~~I~~I~~rgk~PIlVGGTgl  122 (468)
T PLN02748         93 AKD----FRDHAVPLIEEILSRNGLPVIVGGTNY  122 (468)
T ss_pred             HHH----HHHHHHHHHHHHHhcCCCeEEEcChHH
Confidence            433    22334557788888885 677766653

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.49  E-value=0.0065  Score=59.81  Aligned_cols=91  Identities=22%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcC-CCC-C---hhhHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSK-GHH-D---DMLQTAELVHQSST  284 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~-~~~-~---~~~y~~e~v~~~~~  284 (516)
                      ++.+|.+-|.=||||||.++.|.+.+..  .+-.+++. .|-.-.-...+|.-+... ... +   ..++++.+ ++   
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~--~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR-~~---   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEE--RGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADR-AQ---   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHH-HH---
Confidence            5789999999999999999999988742  11122222 111100012233333321 111 1   11223333 22   


Q ss_pred             HHHHHHHHHHHhCCCcEEEeCCCC
Q 010176          285 DAASSLLVTALNEGRDVIMDGTLS  308 (516)
Q Consensus       285 ~~a~~la~~aL~~G~sVIvDaTfs  308 (516)
                       .+...+..++..|+-||.|--+.
T Consensus        76 -h~~~~i~pal~~g~vVI~DRy~~   98 (208)
T COG0125          76 -HLEEVIKPALKEGKVVICDRYVD   98 (208)
T ss_pred             -HHHHHHHHhhcCCCEEEECCccc
Confidence             24558889999999999996543

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.47  E-value=0.0025  Score=65.40  Aligned_cols=62  Identities=15%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             cCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhh---hHhHHHHHHHhHHHhhccCceEEEEecCCC
Q 010176          367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS---QLKSHKRFANAFRNYCELVDNARLYCTNAV  434 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~---ql~s~~rf~~~~~~y~~lvD~~~lydnn~~  434 (516)
                      ++.+..++++|++|+.++.+    +|..++.|.=|...   .+..-+.=.+.+......+|.  +.||+..
T Consensus        77 ~~~~~~~~ilFLdA~d~~Li----rRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~--vIDTs~l  141 (284)
T PF03668_consen   77 RKKGIDVRILFLDASDEVLI----RRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADL--VIDTSNL  141 (284)
T ss_pred             HhcCCceEEEEEECChHHHH----HHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE--EEECCCC
Confidence            45588899999999999875    45666666666432   233333333444555566663  5677654

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PLN02199 shikimate kinase

Probab=97.45  E-value=0.0066  Score=62.86  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..-|++.|.+||||||+++.|++.+++       .+||+|.+-
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~-------~fIDtD~lI  137 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGY-------TFFDCDTLI  137 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEehHHHH
Confidence            456788899999999999999999854       899887654

>PLN02840 tRNA dimethylallyltransferase

Probab=97.40  E-value=0.00047  Score=74.33  Aligned_cols=93  Identities=23%  Similarity=0.270  Sum_probs=56.8

Q ss_pred             cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch-----HHHHHHhcCCCC------
Q 010176          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD-----VIYRALSSKGHH------  269 (516)
Q Consensus       204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD-----~irk~L~~~~~~------  269 (516)
                      +.++...++.+|+|.||+||||||++..|++.++       ..+|++|.+.   ..|     +-..++.+..|+      
T Consensus        13 ~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~   85 (421)
T PLN02840         13 SGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILH   85 (421)
T ss_pred             CccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecC
Confidence            3334556778999999999999999999999983       4678887642   111     001111121111      


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176          270 DDMLQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTL  307 (516)
Q Consensus       270 ~~~~y~~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf  307 (516)
                      +...|+...    ..+.+...++..++.|+ +||+=||.
T Consensus        86 p~e~ySv~~----F~~~A~~~I~~i~~rgkiPIvVGGTG  120 (421)
T PLN02840         86 PSDDYSVGA----FFDDARRATQDILNRGRVPIVAGGTG  120 (421)
T ss_pred             CCCceeHHH----HHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            222344333    23345568888888886 57776664

>PLN02165 adenylate isopentenyltransferase

Probab=97.37  E-value=0.00033  Score=73.39  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...+.+|+|.||+||||||++..|+..++       ..+|++|.+
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~-------~eIIsaDs~   77 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFP-------SEIINSDKM   77 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcC-------CceecCChh
Confidence            34566899999999999999999999984       478999877

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.35  E-value=0.00071  Score=73.19  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=37.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....|.+|+++|++||||||++..|+..+.  ..+....+|++|.+|..
T Consensus        96 ~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~a  142 (429)
T TIGR01425        96 KKGKQNVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAG  142 (429)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchh
Confidence            345689999999999999999999987652  12235688999999854

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.35  E-value=0.0022  Score=60.66  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC------CCC------ChhhH-
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK------GHH------DDMLQ-  274 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~------~~~------~~~~y-  274 (516)
                      .....++|++-|.|-||||++|.++.+-..     ..-.+|.-|.|      ..++.+.      +.+      ++... 
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a-----~pwmhigiD~f------~e~lpp~~~d~a~g~~~~~~v~~dg~~~   87 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAA-----EPWMHIGIDLF------WEALPPEQLDLARGYTWDSAVEADGLEW   87 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhh-----cchhhhhHHHH------HHhCCHHhhccccccccccccccCCcee
Confidence            445679999999999999999999876541     12356644443      3333221      100      00000 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcc
Q 010176          275 ---TAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVK  351 (516)
Q Consensus       275 ---~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~  351 (516)
                         .+..+++.+..-....+...+.+|.+||.|.+...+.+.-   +.++                              
T Consensus        88 v~v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~---Dc~r------------------------------  134 (205)
T COG3896          88 VTVHPGPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLV---DCLR------------------------------  134 (205)
T ss_pred             eEeechhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHH---HHHH------------------------------
Confidence               0111233333333345667778899999999998754432   2222                              


Q ss_pred             ccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176          352 EGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       352 ~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                                     .-.|++|.+++|.|+.|.-..|-.+|.
T Consensus       135 ---------------~l~g~~v~~VGV~~p~E~~~~Re~rr~  161 (205)
T COG3896         135 ---------------VLEGCRVWMVGVHVPDEEGARRELRRG  161 (205)
T ss_pred             ---------------HHhCCceEEEEeeccHHHHHHHHhhcC
Confidence                           123678999999999998888777764

>PRK13976 thymidylate kinase; Provisional

Probab=97.34  E-value=0.0079  Score=59.03  Aligned_cols=91  Identities=21%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCCh----hhHHHHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDAA  287 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~----~~y~~e~v~~~~~~~a  287 (516)
                      .+|++-|.-||||||.++.|++.+.-......+++. .|..-.-...+++-+.+......    ..+++.+     .+..
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R-----~~~~   75 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMR-----REHF   75 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHH-----HHHH
Confidence            378999999999999999999887320000122222 22110012234444443211111    1112211     1122


Q ss_pred             HHHHHHHHhCCCcEEEeCCCC
Q 010176          288 SSLLVTALNEGRDVIMDGTLS  308 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs  308 (516)
                      ...+..+|+.|..||.|--+.
T Consensus        76 ~~~I~p~l~~G~~VI~DRy~~   96 (209)
T PRK13976         76 VKVILPALLQGKIVICDRFID   96 (209)
T ss_pred             HHHHHHHHHCCCEEEECCCcC
Confidence            346888999999999996553

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.31  E-value=0.0025  Score=65.05  Aligned_cols=46  Identities=22%  Similarity=0.433  Sum_probs=36.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ...|.++++.|++|+||||++..|+..+.  ..+....++++|.++..
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~  114 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAA  114 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHH
Confidence            45688999999999999999999987662  22345678999998754

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.30  E-value=0.00081  Score=62.90  Aligned_cols=41  Identities=22%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ++++.|+|||||||++..++..+.-  .+....+++.|.++..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g~~v~~i~~D~~~~~   42 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK--KGKKVLLVAADTYRPA   42 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCChH
Confidence            5788999999999999999876521  1235678999988754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.25  E-value=0.0023  Score=66.83  Aligned_cols=45  Identities=22%  Similarity=0.448  Sum_probs=35.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ...|.++.+.|||||||||++..|+..+..  .+....++++|.++.
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~  155 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRA  155 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccch
Confidence            356899999999999999999999887632  233567789998874

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.24  E-value=0.00031  Score=61.51  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.||||+||||+++.++..++.     ..+.++...+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~   34 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSEL   34 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-----cccccccccc
Confidence            688999999999999999999843     4455655443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.23  E-value=0.00016  Score=66.06  Aligned_cols=23  Identities=43%  Similarity=0.767  Sum_probs=20.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|++.|||||||||+++.|++.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47889999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.19  E-value=0.00044  Score=59.25  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +..+++.|||||||||+++.++..+...  ....++++++.....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~   44 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEE   44 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEcccc
Confidence            4578999999999999999999988531  114677877665443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.18  E-value=0.0011  Score=69.75  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+|.+|++.|+||+||||++..|+..+..  .+....++++|.+|..
T Consensus       137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~--~g~~V~li~~Dt~R~~  182 (336)
T PRK14974        137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKK--NGFSVVIAAGDTFRAG  182 (336)
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcCcHH
Confidence            346899999999999999988888765521  1234567999988754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.18  E-value=0.0036  Score=59.72  Aligned_cols=132  Identities=15%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ....++++|++||||||+.+.|......   ..+.+.+ +++++........++.. .. ......+..       ....
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~---~~~~i~ied~~E~~~~~~~~~~~~~-~~-~~~~~~~~~-------~~~~   91 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPP---DERIITIEDTAELQLPHPNWVRLVT-RP-GNVEGSGEV-------TMAD   91 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEECCccccCCCCCCEEEEEE-ec-CCCCCCCcc-------CHHH
Confidence            4678999999999999999999876632   2244444 22222211000000000 00 000000000       1123


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK  369 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~  369 (516)
                      .+..++..+-++|+-+-+..++-.+ +++.+..                                               
T Consensus        92 ~l~~~lR~~pd~i~igEir~~ea~~-~~~a~~t-----------------------------------------------  123 (186)
T cd01130          92 LLRSALRMRPDRIIVGEVRGGEALD-LLQAMNT-----------------------------------------------  123 (186)
T ss_pred             HHHHHhccCCCEEEEEccCcHHHHH-HHHHHhc-----------------------------------------------
Confidence            6677888889999999998876433 2332221                                               


Q ss_pred             CceEEEEEEe-cCHHHHHHHHHHhhhhcCcccch
Q 010176          370 PYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV  402 (516)
Q Consensus       370 gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~  402 (516)
                      |+...+.-+. .++..++.|...+..++|+.++.
T Consensus       124 Gh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~  157 (186)
T cd01130         124 GHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL  157 (186)
T ss_pred             CCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH
Confidence            2221223444 48999999999999988887765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.14  E-value=0.00033  Score=56.50  Aligned_cols=23  Identities=39%  Similarity=0.705  Sum_probs=20.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|.++|+|||||||+++.|.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.13  E-value=0.009  Score=61.04  Aligned_cols=157  Identities=14%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHH--HhcC-CCCChhhHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA--LSSK-GHHDDMLQTAELVHQSST  284 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~--L~~~-~~~~~~~y~~e~v~~~~~  284 (516)
                      ..+.|.+|.++|++|+||||+++.|..-+......+.+..|-.|-|--.+.+-++  |... |.+  ..|-...    . 
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfP--eSyD~~~----l-  150 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFP--ESYDVAA----L-  150 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCC--ccccHHH----H-
Confidence            5678999999999999999999998775522122334667777777544333221  2211 211  1121111    1 


Q ss_pred             HHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCC--cccccchhhccccchhhhhhhh
Q 010176          285 DAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDG--TVIENYWEQVKEGEEDYQQKEN  362 (516)
Q Consensus       285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~--~~~e~yw~~v~~a~~~~~~~~~  362 (516)
                          ......+++|...|.==+|++.-+              .-..+ .|.+...-  -++|+-|....+.+        
T Consensus       151 ----l~fl~~vK~~~~~v~aPvysh~~y--------------D~vpd-~~~v~~~pdIlI~EG~nvLq~~~p--------  203 (283)
T COG1072         151 ----LRFLSDVKAGKPDVFAPVYSHLIY--------------DPVPD-AFQVVPQPDILIVEGNNVLQDGEP--------  203 (283)
T ss_pred             ----HHHHHHHhcCCCcccccccccccc--------------ccCCC-ceeecCCCCEEEEechhhhcCCCc--------
Confidence                133344555766555445554210              00011 23322221  12333333322211        


Q ss_pred             hccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176          363 RQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV  400 (516)
Q Consensus       363 ~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V  400 (516)
                       .......|.+. |||++|.++.-.|.+.|....|-..
T Consensus       204 -~~~~sdffDfS-IyvDa~~~~le~wyi~Rfl~~g~~a  239 (283)
T COG1072         204 -WLFLSDFFDFS-IYVDADEELLEERYIERFLKFGLTA  239 (283)
T ss_pred             -cccccccceEE-EEecCCHHHHHHHHHHHHHhcccch
Confidence             01233455554 8999999999999999998766543

>PRK10867 signal recognition particle protein; Provisional

Probab=97.12  E-value=0.00071  Score=73.35  Aligned_cols=47  Identities=26%  Similarity=0.405  Sum_probs=36.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcccccch
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETD  257 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~ir~sD  257 (516)
                      ...|.+|+++|++||||||++..|+..+.-  . +....+|++|.+|...
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~~R~aa  144 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADVYRPAA  144 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccccchHH
Confidence            456999999999999999988888775521  1 2356889999998653

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0017  Score=67.60  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=24.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      -+||+++||||+||||+.++|++++.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            58999999999999999999999983

>TIGR00959 ffh signal recognition particle protein

Probab=97.12  E-value=0.0013  Score=71.18  Aligned_cols=47  Identities=21%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ...|.+++++|++||||||++..|+..+.. ..+....+|++|.+|..
T Consensus        96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g~kV~lV~~D~~R~~  142 (428)
T TIGR00959        96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKK-KQGKKVLLVACDLYRPA  142 (428)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCeEEEEeccccchH
Confidence            456999999999999999999988876420 11335788999998854

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.10  E-value=0.001  Score=68.53  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=28.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|+|.||+|||||+++..|++.+       +..+|++|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~-------~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL-------NAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC-------CCcEEEechh
Confidence            47899999999999999999988       4467888875

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.06  E-value=0.004  Score=59.63  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      +|+|+|.||.||||+++.|. .+++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~   25 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGY   25 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCC
Confidence            68999999999999999999 7755

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=96.98  E-value=0.003  Score=62.88  Aligned_cols=84  Identities=18%  Similarity=0.101  Sum_probs=51.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ||+++|.|-|||||.|..|.+.+..++. +..++|      ..|.-    .+.++.  ..|....--..+...+.+.+.+
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~-K~~v~i------i~des----lg~~~n--s~y~~s~~EK~lRg~L~S~v~R   69 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGT-KQSVRI------IDDES----LGIEKN--SNYGDSQAEKALRGKLRSAVDR   69 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcc-cceEEE------echhh----cCCCCc--ccccccHHHHHHHHHHHHHHHh
Confidence            6899999999999999999988743221 235555      22211    222221  1121111012233445678889


Q ss_pred             HHhCCCcEEEeCCCCCh
Q 010176          294 ALNEGRDVIMDGTLSWV  310 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~  310 (516)
                      .|..|.-||+|+-..-.
T Consensus        70 ~Lsk~~iVI~DslNyIK   86 (281)
T KOG3062|consen   70 SLSKGDIVIVDSLNYIK   86 (281)
T ss_pred             hcccCcEEEEecccccc
Confidence            99999999999766543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.93  E-value=0.0015  Score=57.51  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcccc---CCCCceEEEeCcccccchHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFKETDVIYRALS  264 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~---~~~~~av~IdaD~ir~sD~irk~L~  264 (516)
                      ...++++.|++|+||||+++.+...+...   ....+.++++...-.....++..+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   59 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEIL   59 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            46789999999999999999999876210   0012556776555543344444444

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.85  E-value=0.012  Score=58.22  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=65.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc-CCCC------------------Chhh
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHH------------------DDML  273 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~-~~~~------------------~~~~  273 (516)
                      .+++|.||+|+|||.++-.|++++++       .+|..|-+.=.    .++.- .+++                  .++.
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y----~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~   70 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCY----PELSVGSGRPTPSELKGTRRIYLDDRPLSDGI   70 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-----GGGTTTTT---SGGGTT-EEEES----GGG-S
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecc----cccccccCCCCHHHHcccceeeeccccccCCC
Confidence            47899999999999999999999954       77877776421    12211 1110                  1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcccc
Q 010176          274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG  353 (516)
Q Consensus       274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a  353 (516)
                      ..++..++.+..    .+...- .+..+|+|+-=     ...+..|+++                      .||      
T Consensus        71 i~a~ea~~~Li~----~v~~~~-~~~~~IlEGGS-----ISLl~~m~~~----------------------~~w------  112 (233)
T PF01745_consen   71 INAEEAHERLIS----EVNSYS-AHGGLILEGGS-----ISLLNCMAQD----------------------PYW------  112 (233)
T ss_dssp             --HHHHHHHHHH----HHHTTT-TSSEEEEEE-------HHHHHHHHH-----------------------TTT------
T ss_pred             cCHHHHHHHHHH----HHHhcc-ccCceEEeCch-----HHHHHHHHhc----------------------ccc------
Confidence            343333443332    333333 37789999643     3344555443                      133      


Q ss_pred             chhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhh
Q 010176          354 EEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAI  394 (516)
Q Consensus       354 ~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~  394 (516)
                                    ..+|+..+..+. .|.+.=+.|..+|+.
T Consensus       113 --------------~~~f~w~i~rl~l~d~~~f~~ra~~Rv~  140 (233)
T PF01745_consen  113 --------------SLDFRWHIRRLRLPDEEVFMARAKRRVR  140 (233)
T ss_dssp             --------------SSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred             --------------cCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence                          347888887775 578888899999985

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.84  E-value=0.001  Score=66.03  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=27.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+.|.++++.|+||+||||+++.+..         ...+++.|.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~---------~~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPG---------KTLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCC---------CCEEEeccc
Confidence            34588899999999999999998752         246786655

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.84  E-value=0.003  Score=65.54  Aligned_cols=86  Identities=20%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch-----HHHHHHhcCCCC------ChhhHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD-----VIYRALSSKGHH------DDMLQTA  276 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD-----~irk~L~~~~~~------~~~~y~~  276 (516)
                      .|.+|+|+||.+||||-++-.|++++       +..+|+.|.+.   .-|     +-..++.+..|+      +...|++
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~-------~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa   74 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRL-------GGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA   74 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHc-------CCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccH
Confidence            47899999999999999999999999       45899888753   221     111112222111      2223444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176          277 ELVHQSSTDAASSLLVTALNEGR-DVIMDGTL  307 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf  307 (516)
                      ...+    +.+...+....+.|+ ++++=||.
T Consensus        75 ~~f~----~~a~~~i~~i~~rgk~pIlVGGTg  102 (308)
T COG0324          75 AEFQ----RDALAAIDDILARGKLPILVGGTG  102 (308)
T ss_pred             HHHH----HHHHHHHHHHHhCCCCcEEEccHH
Confidence            3323    334558888889985 66666665

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.80  E-value=0.0014  Score=63.57  Aligned_cols=42  Identities=19%  Similarity=0.415  Sum_probs=34.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      |.+|++.||+|+||||.+..|+..+...  +....+|..|.+|-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCc
Confidence            8899999999999999999998877432  44678899999984

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.76  E-value=0.0035  Score=68.12  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..|.+|+++|++|+||||++..|+..+.-  .+....+|++|.++..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g~kV~lV~~D~~R~a  137 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK--KGLKVGLVAADTYRPA  137 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEecCCCCCHH
Confidence            56999999999999999999999876631  2335788999999763

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.76  E-value=0.0074  Score=65.31  Aligned_cols=46  Identities=15%  Similarity=0.340  Sum_probs=34.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .+|.++++.||+||||||++..|+..+.. ..+....+++.|.++..
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~a  266 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIA  266 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhh
Confidence            35788999999999999999999875421 11234678999998754

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.037  Score=53.04  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=23.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.+++.|.||+||||+.+...+.+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            6889999999999999999998887

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0019  Score=64.05  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .....-.+..++.|+|||||||||+.+.|-.-..+   ..|.+.||.+.+
T Consensus        20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~   66 (240)
T COG1126          20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDV   66 (240)
T ss_pred             CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEec
Confidence            33445567889999999999999999998532211   346788988544

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.66  E-value=0.0059  Score=58.10  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.++|++.|||||||-|+.......+
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l   29 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARL   29 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHh
Confidence            46899999999999999999988777

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.57  E-value=0.0025  Score=64.72  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +-+...++.+-|||||||||+.+.|+.-+.+   ..|.+.+|.-.+.+
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~   68 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIAS   68 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhh
Confidence            4566789999999999999999999986644   35779998877764

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.57  E-value=0.0044  Score=58.22  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=27.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|. ||++|-||+||||++.+|++.++       ..+|+--++
T Consensus         6 ~~PN-ILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~   41 (176)
T KOG3347|consen    6 ERPN-ILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL   41 (176)
T ss_pred             cCCC-EEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence            3455 67789999999999999998884       477755333

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.57  E-value=0.0062  Score=63.12  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh------------cCCCC------Chh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS------------SKGHH------DDM  272 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~------------~~~~~------~~~  272 (516)
                      .+.+|+|.||.|||||.+|-.|+++.        ..+|++|.+.    +|+.|.            +..|+      +..
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~~--------~eIIsaDS~Q----vYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e   70 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKGK--------AEIINVDSIQ----VYKEFDIASCKPSKELRKHIKHHLVDFLEPIK   70 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC--------CcEEeccHHH----HHCCCceecCCCCHHHHcCCCeeeeeccCCCC
Confidence            45689999999999999999999884        2789888753    233321            11121      223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176          273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTL  307 (516)
Q Consensus       273 ~y~~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf  307 (516)
                      .|+...    ..+.+...+++....|+ +||+=||.
T Consensus        71 ~~sv~~----f~~~a~~~i~~i~~~gk~PilvGGTg  102 (300)
T PRK14729         71 EYNLGI----FYKEALKIIKELRQQKKIPIFVGGSA  102 (300)
T ss_pred             ceeHHH----HHHHHHHHHHHHHHCCCCEEEEeCch
Confidence            344333    22234457777777786 56666664

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.56  E-value=0.0039  Score=54.12  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=28.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+..+++.|+||+||||+++.+...+..  .....++++...
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~   57 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASD   57 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhh
Confidence            3557888999999999999999987621  112445564433

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.55  E-value=0.0032  Score=57.84  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=24.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ...+|++.|++||||||+++.+++.++.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3568999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.54  E-value=0.0047  Score=60.05  Aligned_cols=44  Identities=18%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~  258 (516)
                      |..+.+.|++||||||+.+.+...+..   ..+..++..|.....|.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~---~~~~~~~~~d~~~~~~~   44 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQ---KYQLAVITNDIYTQEDA   44 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCc---CCcEEEEeCCcCChhHH
Confidence            678999999999999999999987632   12445666666554443

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.53  E-value=0.04  Score=52.48  Aligned_cols=76  Identities=18%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~-~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      ++=.+.+|+||||++.+|..-++ |       -+|..|+|....             .+     .    ..+    .+.+
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~w-------gHvQnDnI~~k~-------------~~-----~----f~~----~~l~   48 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEW-------GHVQNDNITGKR-------------KP-----K----FIK----AVLE   48 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCC-------CccccCCCCCCC-------------HH-----H----HHH----HHHH
Confidence            44468899999999999998887 7       679777775321             00     0    111    2223


Q ss_pred             HH--hCCCcEEEeCCCCChHHHHHHHHHHHhh
Q 010176          294 AL--NEGRDVIMDGTLSWVPFVEQTIAMARNV  323 (516)
Q Consensus       294 aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~  323 (516)
                      .|  ....-||.|=-......|+++++.....
T Consensus        49 ~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~   80 (168)
T PF08303_consen   49 LLAKDTHPVVIADRNNHQKRERKQLFEDVSQL   80 (168)
T ss_pred             HHhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence            34  3444577787888888999988887664

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.53  E-value=0.0085  Score=55.52  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=18.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~  238 (516)
                      |+|.|++|+||||+++.|++. ++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~   24 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GY   24 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CC
Confidence            678999999999999999987 43

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.51  E-value=0.0021  Score=68.15  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+.++++++|||||||||+++.|+..+.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3568899999999999999999998873

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK09087 hypothetical protein; Validated

Probab=96.49  E-value=0.011  Score=58.65  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC----CCCChhhHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~----~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      .+++.|++||||||+++.++...       ++.+|+++.+...  ....+...    +.. +..  + ...+.    +..
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~~l~iDDi-~~~--~-~~~~~----lf~  108 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD--AANAAAEGPVLIEDI-DAG--G-FDETG----LFH  108 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH--HHHhhhcCeEEEECC-CCC--C-CCHHH----HHH
Confidence            36788999999999999988776       4578877654322  11111110    000 000  0 00122    334


Q ss_pred             HHHHHHhCCCcEEEeCCCCChH
Q 010176          290 LLVTALNEGRDVIMDGTLSWVP  311 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~  311 (516)
                      +...+.+.|..+|+-++...+.
T Consensus       109 l~n~~~~~g~~ilits~~~p~~  130 (226)
T PRK09087        109 LINSVRQAGTSLLMTSRLWPSS  130 (226)
T ss_pred             HHHHHHhCCCeEEEECCCChHH
Confidence            7777778888888888775543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.48  E-value=0.0088  Score=63.77  Aligned_cols=41  Identities=27%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-+.|..+++.||||+|||.++++++.+++.     ..+.+++-++
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-----~~i~vsa~eL  184 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGEL  184 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHHh
Confidence            3477999999999999999999999999964     5677744333

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=96.48  E-value=0.0071  Score=64.10  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=62.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ..+.+|++.|.|||||||++......-       +..++|+|.+..-                        +..    ..
T Consensus       267 ~~~eiV~~vgfp~sGks~f~a~~~~~~-------~y~~vn~d~lg~~------------------------~~C----~~  311 (422)
T KOG2134|consen  267 GHGEIVVAVGFPGSGKSTFAAKRVVPN-------GYKIVNADTLGTP------------------------QNC----LL  311 (422)
T ss_pred             CCCcEEEEEecCCCCcchhhhhhcccC-------ceeEeecccCCCc------------------------hhh----HH
Confidence            445899999999999999998765443       5688977776421                        011    12


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhh
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH  324 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h  324 (516)
                      ...++|..|.+||+|.|--....|..+++.|++..
T Consensus       312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e~~  346 (422)
T KOG2134|consen  312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCATERE  346 (422)
T ss_pred             HHHHHhhcccEEeeCCCCcchHHHHHHhhhHHHhC
Confidence            55678889999999999999999999999998753

>PRK04195 replication factor C large subunit; Provisional

Probab=96.46  E-value=0.0038  Score=68.47  Aligned_cols=44  Identities=25%  Similarity=0.429  Sum_probs=35.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY  260 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir  260 (516)
                      |..+++.||||+||||+++.++.++++     ..+.+|+.+.+..+.+.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~~~i~   82 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTADVIE   82 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccHHHHH
Confidence            778999999999999999999999965     56778776666555443

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.46  E-value=0.0039  Score=59.24  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ++++.|+|||||||+|..++..++.     ...+|.+.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~   35 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATA   35 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCC
Confidence            5899999999999999999988632     45666543

>PLN02796 D-glycerate 3-kinase

Probab=96.44  E-value=0.0057  Score=64.55  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS  264 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~  264 (516)
                      ..|.+|.|.|++||||||+++.|...+...  +.....|.-|.+--....++.+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~--g~~~g~IsiDdfYLt~~e~~~L~  150 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNAT--GRRAASLSIDDFYLTAADQAKLA  150 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhccc--CCceeEEEECCcccchhhHHHHH
Confidence            478999999999999999999998877321  11345566666654333444443

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.44  E-value=0.0056  Score=66.18  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L  263 (516)
                      ..+|.+|.|.|++||||||+++.|...+..  .+.....|.-|+|--....+..+
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~--~g~~vgvISiDDfYLt~eer~kL  261 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRV--TGRKSATLSIDDFYLTAEGQAEL  261 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc--cCCceEEEEECCccCChHHHHHH
Confidence            347999999999999999999999765521  01235667777775444444444

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.41  E-value=0.003  Score=56.32  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ....++.|.|+|||||||+.+.|+.....   ..|.+.++...+..
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~   51 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISD   51 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTT
T ss_pred             cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccc
Confidence            45678999999999999999999876632   23567787666654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.38  E-value=0.0029  Score=50.69  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.++.|+|||||||+..++.--+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999987544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.35  E-value=0.0044  Score=63.39  Aligned_cols=46  Identities=15%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..|.+|++.||+|+||||++..|+..+........+.+|+.|.++.
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            4688999999999999999999987662110013567898888763

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0052  Score=61.40  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=37.8

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i  259 (516)
                      +.-....+..+-|||||||||++..|+..... +.-.|-+.++..+|....+.
T Consensus        25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~   76 (251)
T COG0396          25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPD   76 (251)
T ss_pred             eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHh
Confidence            34566788999999999999999999976533 11235577888777665443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.32  E-value=0.003  Score=61.04  Aligned_cols=24  Identities=38%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +++++||+||||||+...++..+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            789999999999999999887763

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.32  E-value=0.02  Score=52.24  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=28.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      .+++|.++-++|+||+|||.+++.|++.+..
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~   79 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK   79 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence            5789999999999999999999999998743

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.30  E-value=0.0047  Score=54.73  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ....++.+.|+|||||||+++.+.  .       +.+.++.|++..
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~--~-------G~i~~~g~di~~   49 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI--K-------RKHRLVGDDNVE   49 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh--C-------CeEEEeeEeHHH
Confidence            445789999999999999999987  2       236777766643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.29  E-value=0.04  Score=66.02  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=40.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHHHh
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRALS  264 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~L~  264 (516)
                      -+...-+.+.|||||||||+...|..-+.+   ..|.+.||..++++-+  .+|+.+.
T Consensus      1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDP---DAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCcccccCCHHHHHHhcc
Confidence            345567889999999999999988776644   3478999999999655  3566543

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.28  E-value=0.0048  Score=59.43  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   66 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLT   66 (211)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcc
Confidence            4456789999999999999999999876532   2356777765554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=96.26  E-value=0.047  Score=55.50  Aligned_cols=59  Identities=14%  Similarity=0.082  Sum_probs=34.3

Q ss_pred             CceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhh---HhHHHHHHHhHHHhhccCceEEEEecCCC
Q 010176          370 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQ---LKSHKRFANAFRNYCELVDNARLYCTNAV  434 (516)
Q Consensus       370 gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~q---l~s~~rf~~~~~~y~~lvD~~~lydnn~~  434 (516)
                      ++.+.++|+.++.++.+.    |..++.|.=|...+   +...+.=.+.+.+....+|.  +.||+..
T Consensus        81 ~~~~~iLFLeA~~~~Lv~----RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~--vIDTs~l  142 (286)
T COG1660          81 DIDPRVLFLEADDETLVR----RYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADL--VIDTSEL  142 (286)
T ss_pred             CCCceEEEEECchhHHHH----HHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhh--EeecccC
Confidence            477999999999998865    55556565553332   23333333333333344443  6787764

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.26  E-value=0.0045  Score=55.47  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=26.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ++++.|+||+||||++..++.....  .+...++++.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e   36 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIE   36 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECC
Confidence            3688999999999999999876621  12345666443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.24  E-value=0.071  Score=55.80  Aligned_cols=139  Identities=17%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch--------HHHHHHhcC--CCC-ChhhHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD--------VIYRALSSK--GHH-DDMLQTA  276 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD--------~irk~L~~~--~~~-~~~~y~~  276 (516)
                      +-++++|.|+.|||||-|+-.|+.++       ++.+||+|-+.   .-|        .+++++.--  ++. ++..|+ 
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t-   77 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYT-   77 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhC-------CceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhcc-
Confidence            45789999999999999999999997       56899998874   111        122111000  111 122333 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccch
Q 010176          277 ELVHQSSTDAASSLLVTALNEGR-DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE  355 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~  355 (516)
                         -.+..+.+...++..++.|+ ++|+-||.+-   ...+  ++....     . .++-+.+.                
T Consensus        78 ---~~~F~~~a~~aie~I~~rgk~PIv~GGs~~y---i~al--~~~~~d-----~-~~dp~~~~----------------  127 (348)
T KOG1384|consen   78 ---AGEFEDDASRAIEEIHSRGKLPIVVGGSNSY---LQAL--LSKRFD-----P-KIDPFSSN----------------  127 (348)
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCCCEEeCCchhh---HHHH--hhcCCC-----c-ccCccccc----------------
Confidence               33445555668888998885 7888788764   2221  111100     0 01111000                


Q ss_pred             hhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176          356 DYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       356 ~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                            .|...-.-.|.-=++.|+++..+...|+-.|+
T Consensus       128 ------~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV  159 (348)
T KOG1384|consen  128 ------TGSIPSELRYDCCFLWLDADQAVLFERLDKRV  159 (348)
T ss_pred             ------CCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence                  01001122577777888899999999999998

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.23  E-value=0.0082  Score=59.90  Aligned_cols=39  Identities=26%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-=+++.||||.||||+|..++.+++.     +...+++-.+.+
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~-----~~~~~sg~~i~k   88 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGV-----NFKITSGPAIEK   88 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--S
T ss_pred             cceEEEECCCccchhHHHHHHHhccCC-----CeEeccchhhhh
Confidence            344788999999999999999999954     566777766544

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.22  E-value=0.016  Score=62.39  Aligned_cols=30  Identities=20%  Similarity=0.150  Sum_probs=25.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+-.+..|+|.|++|||||||++.|+..++
T Consensus       215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g  244 (399)
T PRK08099        215 RPFFVRTVAILGGESSGKSTLVNKLANIFN  244 (399)
T ss_pred             hhCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence            344577899999999999999999999874

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.21  E-value=0.0036  Score=58.09  Aligned_cols=30  Identities=30%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ....|.++++.|++|+||||+.+++.....
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999987763

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.20  E-value=0.0051  Score=58.46  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.++...+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   56 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPL   56 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEc
Confidence            4456778999999999999999999875532   235577765444

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.20  E-value=0.0052  Score=60.28  Aligned_cols=45  Identities=22%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|-+.++...+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~   66 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITG   66 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCC
Confidence            4456789999999999999999999875532   23557777655543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.20  E-value=0.0055  Score=65.89  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..|..|++.|++|+||||++..|+..+.  ..+....++++|.+|
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~R  281 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSR  281 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcc
Confidence            4578999999999999999999987663  223356789999987

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.18  E-value=0.005  Score=59.23  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.++...+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   64 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPI   64 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEh
Confidence            4456789999999999999999999876532   235577766444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.18  E-value=0.0051  Score=59.61  Aligned_cols=44  Identities=23%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|.+.++...+.
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~   69 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDIS   69 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehh
Confidence            4456789999999999999999999876533   2355777665443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.16  E-value=0.0055  Score=60.42  Aligned_cols=43  Identities=21%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|.+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   66 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDA   66 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            4567789999999999999999999876532   235577765444

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05642 DNA replication initiation factor; Validated

Probab=96.16  E-value=0.019  Score=57.00  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..+++.|++|+|||+++++++.+..  ..+..+++++++++-.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHHHHh
Confidence            4578899999999999999976542  1134678898777643

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.16  E-value=0.0052  Score=64.57  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...|.+|.+.|+|||||||+...|...+..  .+....+|..|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~--~g~~v~vi~~Dp   94 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIE--QGHKVAVLAVDP   94 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence            467899999999999999999998776632  123566676665

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.15  E-value=0.006  Score=58.94  Aligned_cols=44  Identities=18%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~   65 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVT   65 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcC
Confidence            4456788999999999999999999875532   2355777655443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01394 radB RadB

Probab=96.15  E-value=0.0076  Score=58.47  Aligned_cols=41  Identities=12%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+..++++.|+|||||||++..++.....  .+..+++++.+.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~   57 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEG   57 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCC
Confidence            46789999999999999999999876521  234567886643

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.15  E-value=0.0076  Score=58.77  Aligned_cols=50  Identities=18%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             cCCCC-EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176          208 SERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY  260 (516)
Q Consensus       208 ~~~~P-~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir  260 (516)
                      ...+| ..|-++|||||||||+...+.+.+.-   .-...+|..|.+.+.|..+
T Consensus         8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~---~~~~aVI~~Di~t~~Da~~   58 (202)
T COG0378           8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKD---EYKIAVITGDIYTKEDADR   58 (202)
T ss_pred             HhcCceEEEEecCCCCcCHHHHHHHHHHHHHh---hCCeEEEeceeechhhHHH
Confidence            34567 88999999999999999998776621   1245778888887666543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.14  E-value=0.0051  Score=58.91  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+|.++.++|++||||||+++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3566889999999999999999998773

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.14  E-value=0.0065  Score=58.92  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   65 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDIT   65 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence            4466789999999999999999999865532   2355777664443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13768 GTPase; Provisional

Probab=96.13  E-value=0.0067  Score=61.06  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++.++++.|++||||||++..++..+..  .+..+.+||.|.
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~D~   40 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNLDP   40 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEECCC
Confidence            3678999999999999999998876621  234567777765

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.13  E-value=0.0061  Score=59.13  Aligned_cols=43  Identities=21%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   66 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSI   66 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence            4456779999999999999999999976532   235577766544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.12  E-value=0.0057  Score=60.24  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.++...+.
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   67 (243)
T TIGR02315        24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDIT   67 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhh
Confidence            4456789999999999999999999865532   2356777665443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.10  E-value=0.1  Score=57.57  Aligned_cols=45  Identities=16%  Similarity=0.320  Sum_probs=33.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .++.++.+.||||+||||.+..|+..+..........+|+.|.++
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            457899999999999999999999765221111245678888875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.10  E-value=0.0064  Score=58.64  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   63 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKP   63 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCc
Confidence            4466789999999999999999999976532   23556775543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.10  E-value=0.0059  Score=60.13  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.|.|+|||||||+.+.|+....+   ..|.+.++...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~   66 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLR   66 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcc
Confidence            4467889999999999999999999865532   2356777665553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.09  E-value=0.0097  Score=60.93  Aligned_cols=39  Identities=31%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...|.++++.|+||+||||+++.++...+.     +...+|+..
T Consensus        40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~   78 (316)
T PHA02544         40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD   78 (316)
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc
Confidence            445889999999999999999999988742     556776654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.09  E-value=0.0064  Score=58.69  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|-+.++...+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~   64 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDV   64 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            3456778999999999999999999976532   235577765444

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.08  E-value=0.0065  Score=58.66  Aligned_cols=44  Identities=25%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|-+.++...+.
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~   67 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVN   67 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence            3456779999999999999999999876532   2355777665553

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.07  E-value=0.0062  Score=58.71  Aligned_cols=43  Identities=33%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|-+.++...+
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   65 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDV   65 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEc
Confidence            4456789999999999999999999976532   235577765444

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PF05729 NACHT: NACHT domain

Probab=96.07  E-value=0.0047  Score=55.94  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=21.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++++|.|.+|+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            468999999999999999998766

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.07  E-value=0.025  Score=60.71  Aligned_cols=47  Identities=15%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcccc--CCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~--~~~~~av~IdaD~ir~s  256 (516)
                      ..|.+|++.||+|+||||.+..|+..+...  ..+....+++.|.++..
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a  220 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG  220 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH
Confidence            468999999999999999999998765321  11345678999998743

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.07  E-value=0.014  Score=63.13  Aligned_cols=40  Identities=33%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .|.-|++.||||+||||+|+.|++.++.     ..+.+|+..|..
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~-----~fi~vD~t~f~e   88 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE   88 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC-----hheeecchhhcc
Confidence            4678999999999999999999998854     556676665653

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.06  E-value=0.0067  Score=59.47  Aligned_cols=44  Identities=25%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|.+.++...+.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   70 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLT   70 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence            3456789999999999999999999876643   2356777665443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.06  E-value=0.0068  Score=59.56  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|-+.++...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   66 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDIN   66 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEecc
Confidence            4456789999999999999999999865532   2355777665543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.06  E-value=0.0067  Score=58.98  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   70 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLL   70 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence            4466789999999999999999999976532   2355777665543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.05  E-value=0.067  Score=53.16  Aligned_cols=39  Identities=21%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-+++.||+|+|||+++..++....-  .+..+.+++.+..
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~   84 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKR   84 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHH
Confidence            35788999999999999999876521  1224567766654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.04  E-value=0.0067  Score=59.61  Aligned_cols=44  Identities=25%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+.+   ..|-+.++...+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~   65 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDIS   65 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence            4456788999999999999999999976532   2356777765554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.04  E-value=0.0074  Score=58.93  Aligned_cols=44  Identities=18%  Similarity=0.193  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc-----cccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES-----FWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l-----~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+...     ..   ..|-+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~   70 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY   70 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence            44567899999999999999999998765     32   2356778765554

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.04  E-value=0.039  Score=59.19  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ...+.++++.||+|+||||++..|+..+..  .+....+|++|.++.
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~  247 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRS  247 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCc
Confidence            356889999999999999999999876521  123567899999986

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.04  E-value=0.0091  Score=57.53  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|-+.++...+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~v~~~g~~~~   66 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIR   66 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcc
Confidence            4466789999999999999999999976543   2356777665543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.03  E-value=0.0075  Score=58.91  Aligned_cols=44  Identities=18%  Similarity=0.174  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.-...   ..|.+.++...+.
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~   75 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLH   75 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcc
Confidence            4467889999999999999999999876532   2355777665443

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.03  E-value=0.008  Score=57.52  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++.-.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   64 (195)
T PRK13541         22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNI   64 (195)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCccc
Confidence            3456779999999999999999999876543   235577765444

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.02  E-value=0.007  Score=58.77  Aligned_cols=43  Identities=21%  Similarity=0.226  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   69 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSL   69 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEh
Confidence            4456789999999999999999999876532   245677765444

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PHA03132 thymidine kinase; Provisional

Probab=96.02  E-value=0.33  Score=54.72  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -.+|.+-|..||||||+++.|.+.+
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~l  281 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGIL  281 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4788999999999999999999886

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.02  E-value=0.0093  Score=57.37  Aligned_cols=41  Identities=12%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++..++.+.|+||||||+++..++.....  .+..+++|+.+.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC
Confidence            45689999999999999999998865421  134678897765

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.01  E-value=0.0077  Score=58.89  Aligned_cols=44  Identities=18%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   65 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDIT   65 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence            3456789999999999999999999876532   2355777665543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.00  E-value=0.0084  Score=58.74  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   72 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDIS   72 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcC
Confidence            4466789999999999999999999875432   2356777665543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.00  E-value=0.0059  Score=59.19  Aligned_cols=44  Identities=25%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   63 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHT   63 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEcc
Confidence            4456789999999999999999999976533   2355777665553

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.00  E-value=0.0075  Score=58.66  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..+.+   ..|-+.++...+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   64 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDV   64 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEec
Confidence            4456789999999999999999999875532   235577765444

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.99  E-value=0.0078  Score=59.48  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   66 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIR   66 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcC
Confidence            4456788999999999999999999876532   2356778765554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.99  E-value=0.0077  Score=58.03  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   64 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKL   64 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence            3456789999999999999999999976532   235577766544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=95.99  E-value=0.12  Score=53.05  Aligned_cols=29  Identities=17%  Similarity=0.502  Sum_probs=26.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ...++|.+-|+-|||||++|++|++++++
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf   97 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGF   97 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCC
Confidence            45789999999999999999999999965

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.98  E-value=0.0083  Score=57.76  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   65 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQ   65 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCccc
Confidence            3456789999999999999999999875532   2356777665553

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.98  E-value=0.01  Score=53.34  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~  237 (516)
                      |++.|+||+|||++++.+++.++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            67899999999999999999884

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF13245 AAA_19: Part of AAA domain

Probab=95.98  E-value=0.0065  Score=50.32  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=18.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.+++|.|||||||||++..+...+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567789999999996665555444

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.97  E-value=0.0072  Score=58.52  Aligned_cols=43  Identities=23%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++.-.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   67 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDL   67 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence            4456788999999999999999999976532   235577765444

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.97  E-value=0.0078  Score=59.15  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|.+.++...+.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~   74 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMS   74 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence            4456789999999999999999999876532   2356777664443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.96  E-value=0.011  Score=56.88  Aligned_cols=45  Identities=27%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+-...-.+.+.|||||||||+.+.++.-...   -.|.+.+....+-
T Consensus        24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs   68 (223)
T COG4619          24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVS   68 (223)
T ss_pred             eeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCcccc
Confidence            34566778999999999999999999864422   2244556554443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.96  E-value=0.009  Score=56.15  Aligned_cols=43  Identities=23%  Similarity=0.172  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~   66 (173)
T cd03246          24 SIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADI   66 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEc
Confidence            4456789999999999999999999976532   235677766444

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.96  E-value=0.0082  Score=57.92  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +. ++.+.|+|||||||+.+.|+.-+..   ..|-+.++...+.
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   64 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVL   64 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccc
Confidence            35 8899999999999999999875532   2355777665543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.93  E-value=0.0096  Score=56.32  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|......   ..|.+.++...+.
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~   64 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLA   64 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence            3456789999999999999999999876532   2356777654443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.93  E-value=0.0061  Score=60.63  Aligned_cols=28  Identities=29%  Similarity=0.596  Sum_probs=23.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..+.++++.|++||||||+++.+...+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3356788999999999999999998873

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.93  E-value=0.027  Score=58.98  Aligned_cols=46  Identities=24%  Similarity=0.457  Sum_probs=36.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+|.+|++.|.||+||||-...|+..+.  ..+...++.-+|.||..
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAa  181 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAA  181 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHH
Confidence            46799999999999999999999987763  22345667788999843

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.93  E-value=0.0081  Score=58.83  Aligned_cols=44  Identities=16%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   67 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVR   67 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhh
Confidence            4456789999999999999999999876533   2356777665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.93  E-value=0.0081  Score=59.01  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   67 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDLA   67 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCeehH
Confidence            4467889999999999999999999976532   2356777665443

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.93  E-value=0.0089  Score=58.45  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|-+.++...+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   65 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDIT   65 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECC
Confidence            4456789999999999999999999876532   2356777665543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.92  E-value=0.008  Score=59.53  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~   68 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIK   68 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhh
Confidence            3456789999999999999999999976532   2356777665543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.91  E-value=0.0078  Score=58.53  Aligned_cols=41  Identities=27%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .-.+..++.+.|+|||||||+.+.|+....+   ..|.+.++.-
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~   66 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGE   66 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence            4456789999999999999999999875532   2355666543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.91  E-value=0.0085  Score=56.51  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~   65 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVP   65 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEE
Confidence            4456789999999999999999999876533   34567776543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.91  E-value=0.0081  Score=58.06  Aligned_cols=41  Identities=29%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++.-
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~   61 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGK   61 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCc
Confidence            4456789999999999999999999876532   2355677543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.91  E-value=0.011  Score=56.62  Aligned_cols=44  Identities=20%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   65 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALA   65 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcc
Confidence            3456789999999999999999999876532   2355777665443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0088  Score=59.41  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=34.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+..
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~   71 (255)
T PRK11300         27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEG   71 (255)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCC
Confidence            4456789999999999999999999876533   23667787655543

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.90  E-value=0.0091  Score=56.59  Aligned_cols=45  Identities=11%  Similarity=0.226  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+..
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~   66 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTR   66 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCc
Confidence            4456778999999999999999999976643   23557777655543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.90  E-value=0.0079  Score=58.03  Aligned_cols=45  Identities=20%  Similarity=0.155  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+..
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~   64 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTA   64 (211)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCc
Confidence            3456778999999999999999999876532   23567777655543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.90  E-value=0.0092  Score=56.34  Aligned_cols=44  Identities=18%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   -.|-+.++...+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   65 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLT   65 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence            3456788999999999999999999876532   2355777665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.89  E-value=0.0091  Score=56.12  Aligned_cols=43  Identities=21%  Similarity=0.163  Sum_probs=32.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~   64 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDI   64 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence            3456779999999999999999999876532   235577766444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=95.88  E-value=0.0099  Score=69.57  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....+|.|.|||||||||+++.|++.+++       .+||.+.+-+.
T Consensus        32 m~~~~i~idG~~gsGKst~~~~la~~l~~-------~~~~~g~~yRa   71 (863)
T PRK12269         32 MGTVIIALDGPAGSGKSSVCRLLASRLGA-------QCLNTGSFYRA   71 (863)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHHHH
Confidence            34468999999999999999999999954       88966665443

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.88  E-value=0.016  Score=62.62  Aligned_cols=97  Identities=23%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH-HHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-YRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i-rk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ....|.+|+++|+=||||||.+..|+..+.  ..+..+-++.+|.+|-.-.. .+.|...-  ..+.|.. -..+.-.+.
T Consensus        96 ~~~~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~-~~~~~Pv~I  170 (451)
T COG0541          96 AKKPPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGS-GTEKDPVEI  170 (451)
T ss_pred             CCCCCeEEEEEeccCCChHhHHHHHHHHHH--HcCCceEEEecccCChHHHHHHHHHHHHc--CCceecC-CCCCCHHHH
Confidence            356799999999999999999999987662  23446688999999853111 12222210  0000100 001112233


Q ss_pred             HHHHHHHHHhCCCc-EEEeCCCCC
Q 010176          287 ASSLLVTALNEGRD-VIMDGTLSW  309 (516)
Q Consensus       287 a~~la~~aL~~G~s-VIvDaTfs~  309 (516)
                      +.+-++.+-..+++ ||+||.-..
T Consensus       171 ak~al~~ak~~~~DvvIvDTAGRl  194 (451)
T COG0541         171 AKAALEKAKEEGYDVVIVDTAGRL  194 (451)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcc
Confidence            44566777777876 556665433

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.88  E-value=0.0087  Score=58.42  Aligned_cols=44  Identities=18%  Similarity=0.241  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   68 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIR   68 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHH
Confidence            4456778999999999999999999976633   2366778665443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.87  E-value=0.0068  Score=57.95  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .-....++.+.|||||||||+.+.++.
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            456778999999999999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.86  E-value=0.0094  Score=57.85  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   68 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDI   68 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence            4456789999999999999999999876532   235577765444

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.034  Score=59.64  Aligned_cols=49  Identities=20%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             cccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          202 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       202 ~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|...+-++..++++.|.|||||||+++-|..-..+   ..|-+++|..-+
T Consensus       339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P---qsG~I~ldg~pV  387 (546)
T COG4615         339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGKPV  387 (546)
T ss_pred             ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC---CCCceeECCccC
Confidence            3455666688999999999999999999988764432   234467765444

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=95.85  E-value=0.0091  Score=55.87  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=26.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++|.|+||+|||+++..++...-  ..+..+.++..++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~   37 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE   37 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence            68999999999999999876541  2244677886544

A related protein is found in archaea.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.85  E-value=0.01  Score=55.45  Aligned_cols=44  Identities=25%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~   65 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVS   65 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECC
Confidence            4456789999999999999999999876532   2355777664443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=95.84  E-value=0.033  Score=62.04  Aligned_cols=110  Identities=18%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc--chHHHHHHhcC-CCC-------------Chh
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE--TDVIYRALSSK-GHH-------------DDM  272 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~--sD~irk~L~~~-~~~-------------~~~  272 (516)
                      -++...+.+.|+|||||||+++.|..-+.+   ..|.+.||.-+++.  .+.+|+.+.-. +.+             ..+
T Consensus       352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~  428 (567)
T COG1132         352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP  428 (567)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence            345677889999999999999999876643   34678886656653  34456665411 000             000


Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHhCCCcEEEe--CCCCChHHHHHHHHHHHhh
Q 010176          273 LQTAELVHQSSTDA-ASSLLVTALNEGRDVIMD--GTLSWVPFVEQTIAMARNV  323 (516)
Q Consensus       273 ~y~~e~v~~~~~~~-a~~la~~aL~~G~sVIvD--aTfs~~~~r~~~~~lAr~~  323 (516)
                      ..+.+.+.+.+... +...+.. +.+|++.++.  +......+|++ +++||..
T Consensus       429 ~at~eei~~a~k~a~~~d~I~~-lp~g~dt~vge~G~~LSgGQrQr-laiARal  480 (567)
T COG1132         429 DATDEEIEEALKLANAHEFIAN-LPDGYDTIVGERGVNLSGGQRQR-LAIARAL  480 (567)
T ss_pred             CCCHHHHHHHHHHhChHHHHHh-CcccccceecCCCccCCHHHHHH-HHHHHHH
Confidence            01122222222211 1222222 3559998887  55666666665 5677764

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.84  E-value=0.012  Score=66.80  Aligned_cols=31  Identities=29%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      .++..++.++|||||.||||+|.-++..-|+
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGY  352 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGY  352 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence            4556689999999999999999999998855

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.84  E-value=0.01  Score=58.10  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..+...+...|-++++...+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~   74 (226)
T cd03234          29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR   74 (226)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence            4456789999999999999999999876530000235577765444

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.82  E-value=0.01  Score=58.47  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus         8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   49 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQI   49 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence            345779999999999999999999876532   235577765444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.81  E-value=0.012  Score=57.76  Aligned_cols=44  Identities=16%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~   66 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIR   66 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhh
Confidence            3456789999999999999999999876532   3466778665543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.81  E-value=0.0099  Score=58.89  Aligned_cols=43  Identities=19%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|.+.++...+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   67 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITI   67 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEc
Confidence            4456788999999999999999999876532   235567765444

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.80  E-value=0.011  Score=56.69  Aligned_cols=44  Identities=30%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-++++...+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~   66 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIK   66 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccc
Confidence            4456789999999999999999999876532   2356778765554

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.80  E-value=0.01  Score=57.48  Aligned_cols=43  Identities=19%  Similarity=0.084  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++.-.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   69 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDV   69 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEc
Confidence            4456788999999999999999999876532   235577755433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.80  E-value=0.01  Score=56.84  Aligned_cols=42  Identities=21%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|-+.++.-.
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~   61 (206)
T TIGR03608        20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKE   61 (206)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence            3456778999999999999999999976532   23556775544

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.79  E-value=0.011  Score=55.43  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~   66 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDL   66 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence            4456789999999999999999999876643   235577766444

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.78  E-value=0.011  Score=57.69  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++.-.+
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   78 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPI   78 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCch
Confidence            4467889999999999999999999876532   235577755433

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.78  E-value=0.01  Score=58.56  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   66 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVN   66 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence            4456789999999999999999999976532   2355777765543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.011  Score=59.86  Aligned_cols=42  Identities=26%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +-.+..++.+.|||||||||+.+.++.-+.+   ..|.+.+....
T Consensus        26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~   67 (254)
T COG1121          26 SVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKP   67 (254)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEcccc
Confidence            4566789999999999999999999874432   23556665543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.77  E-value=0.011  Score=58.07  Aligned_cols=44  Identities=23%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~   64 (232)
T PRK10771         21 TVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHT   64 (232)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecC
Confidence            3456789999999999999999999876532   2356777765554

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.77  E-value=0.011  Score=58.20  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~   68 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDIS   68 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence            4456789999999999999999999976532   2355777665554

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=95.76  E-value=0.063  Score=51.13  Aligned_cols=33  Identities=6%  Similarity=0.171  Sum_probs=25.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|.|.+..|||++|+++.|++.++       ..++|.+.+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg-------~~~~d~~ii   33 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG-------YPYYDREII   33 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT---------EE-HHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC-------CccCCHHHH
Confidence            578999999999999999999995       477866544

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.76  E-value=0.0088  Score=59.90  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             EecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       217 i~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |.||+||||||+.+.+.+.+..  .+....+||-|-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~--~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES--NGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT--T-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh--ccCCceEEEcch
Confidence            5799999999999999987632  234566776553

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.76  E-value=0.0091  Score=60.03  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|-+.++...+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   75 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPL   75 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEeh
Confidence            4456789999999999999999999876532   235677876554

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.76  E-value=0.065  Score=52.83  Aligned_cols=40  Identities=28%  Similarity=0.409  Sum_probs=28.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +++.|++|+|||++.+++..+..-......++++++++|.
T Consensus        37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~   76 (219)
T PF00308_consen   37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI   76 (219)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence            5789999999999999997764211112356889887764

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK10908 cell division protein FtsE; Provisional

Probab=95.76  E-value=0.011  Score=57.69  Aligned_cols=43  Identities=26%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   66 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDI   66 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence            4456789999999999999999999876532   235577766444

>PF13173 AAA_14: AAA domain

Probab=95.75  E-value=0.01  Score=53.04  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=30.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .++++.|+.|+||||+++.+++.+..   ..+.+++|-|+.+
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~   41 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPR   41 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHH
Confidence            56889999999999999999988731   2356788665543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.75  E-value=0.011  Score=57.38  Aligned_cols=43  Identities=23%  Similarity=0.269  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   68 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDI   68 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEh
Confidence            4467889999999999999999999876532   235577765444

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=95.74  E-value=0.0087  Score=55.98  Aligned_cols=27  Identities=41%  Similarity=0.417  Sum_probs=23.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .|.+.+|.|+|||||||+..+|.--++
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            578999999999999999999976664

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.74  E-value=0.011  Score=57.12  Aligned_cols=42  Identities=24%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+ .++.+.|+|||||||+.+.|+..+..   ..|.+.++.-.+
T Consensus        20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   61 (214)
T cd03297          20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKP---DGGTIVLNGTVL   61 (214)
T ss_pred             EEcc-eeEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEec
Confidence            3455 89999999999999999999876532   235566755433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.73  E-value=0.0066  Score=65.64  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..=|+++|+||+||||++++|++-+
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHH
Confidence            3458999999999999999999866

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.73  E-value=0.012  Score=55.19  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~   61 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMP   61 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEEC
Confidence            4456789999999999999999999876533   23445553

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.72  E-value=0.011  Score=55.30  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..-+++.|+|||||||++..|.+.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            567899999999999999999876

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.71  E-value=0.012  Score=57.96  Aligned_cols=43  Identities=16%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.++.++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   67 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDI   67 (238)
T ss_pred             EecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEeh
Confidence            4467889999999999999999999976532   235577765443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.71  E-value=0.011  Score=59.23  Aligned_cols=42  Identities=24%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~   64 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSITLDGKP   64 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence            4456789999999999999999999976532   23556675433

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.70  E-value=0.012  Score=58.80  Aligned_cols=42  Identities=19%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~   69 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRD   69 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCcc
Confidence            4467789999999999999999999976532   23567777654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.70  E-value=0.0092  Score=60.62  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----chHHHHH-HhcCCCCChhhH-------HH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----TDVIYRA-LSSKGHHDDMLQ-------TA  276 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----sD~irk~-L~~~~~~~~~~y-------~~  276 (516)
                      .+...|-|+|+||+||||+...|...+--.+...+.+-|||---..     -|-+|-. ++..  +..++.       ..
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d--~~vfIRS~atRG~lG  104 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD--PGVFIRSMATRGSLG  104 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTS--TTEEEEEE---SSHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCC--CCEEEeecCcCCCCC
Confidence            4567899999999999999999988774323333444566532211     0111111 1110  000000       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHHHHhhhhhccccccccc
Q 010176          277 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK  335 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~  335 (516)
                      .. ...+.    ..+.-+-..|++ ||+||+=-.++..    +.+.-++...|.+.||+-
T Consensus       105 Gl-s~~t~----~~v~ll~aaG~D~IiiETVGvGQsE~----~I~~~aD~~v~v~~Pg~G  155 (266)
T PF03308_consen  105 GL-SRATR----DAVRLLDAAGFDVIIIETVGVGQSEV----DIADMADTVVLVLVPGLG  155 (266)
T ss_dssp             HH-HHHHH----HHHHHHHHTT-SEEEEEEESSSTHHH----HHHTTSSEEEEEEESSTC
T ss_pred             Cc-cHhHH----HHHHHHHHcCCCEEEEeCCCCCccHH----HHHHhcCeEEEEecCCCc
Confidence            11 22222    244555557997 5678877676553    345556677777777754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.69  E-value=0.011  Score=53.54  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      +...+|++.|..||||||+++.++..++.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34678999999999999999999999854

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.68  E-value=0.011  Score=59.71  Aligned_cols=43  Identities=19%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.|.|+|||||||+.+.|+..+..   ..|.+.++...+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i   65 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQGKPL   65 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CccEEEECCEEc
Confidence            4456789999999999999999999876532   235677766554

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.014  Score=56.21  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      +-....+++++|+|||||||+.+.|-..+..   ..|-++|
T Consensus        33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~---d~G~I~v   70 (235)
T COG4778          33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLP---DEGQILV   70 (235)
T ss_pred             EecCccEEEeeCCCCCcHHHHHHHHHhccCC---CCceEEE
Confidence            5567889999999999999999999887744   2355666

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.67  E-value=0.0098  Score=57.57  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+..+++.|++|+||||+++.+.....-  .....++++.+.+.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~   78 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHH
Confidence            44677889999999999999999876521  12245777665553

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.67  E-value=0.012  Score=58.10  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   66 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHF   66 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEec
Confidence            3456788999999999999999999876532   235577766543

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=95.66  E-value=0.018  Score=58.58  Aligned_cols=28  Identities=32%  Similarity=0.258  Sum_probs=23.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|.-+++.||||+||||+++.++.+++
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3455678899999999999999999874

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.66  E-value=0.21  Score=57.92  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.+|.+.||+|+||||.+..|+..+..........++..|.++
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            47899999999999999999998765211111245688899887

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.66  E-value=0.011  Score=59.14  Aligned_cols=44  Identities=25%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+....+   ..|-+.++...+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~   67 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLA   67 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcc
Confidence            4456789999999999999999999976532   2356778665543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=95.64  E-value=0.01  Score=59.67  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=+++.||||+||||+|+.++..+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            34457789999999999999998865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.64  E-value=0.0098  Score=62.60  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY  260 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir  260 (516)
                      .-....++++-|||||||||+.+.|+.-...   ..|-+.|+..++....|..
T Consensus        25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~   74 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEK   74 (338)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhH
Confidence            4456778999999999999999999864432   3467889887776544443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.64  E-value=0.014  Score=62.41  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=34.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .++.++++.||+|+||||++..|+..+-.........+|..|.++-.
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~g  181 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIG  181 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence            45678999999999999999999876421000124578889998743

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.64  E-value=0.012  Score=59.30  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+.+   ..|-+.++...+.
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~   89 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQDIA   89 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcc
Confidence            4567789999999999999999999876532   2355777665443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.63  E-value=0.014  Score=57.21  Aligned_cols=41  Identities=32%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+..++.+.|+|||||||+.+.|+.....   ..|-+.+|...+
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   44 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGASP   44 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc
Confidence            35678999999999999999999976532   235577766543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.62  E-value=0.014  Score=56.68  Aligned_cols=43  Identities=23%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   65 (218)
T cd03290          23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNE   65 (218)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCccc
Confidence            4456789999999999999999999976532   245677765444

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.62  E-value=0.017  Score=56.49  Aligned_cols=43  Identities=28%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++++.|||||||||+.+.|.....+   ..|-+.++.-++
T Consensus        24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl   66 (223)
T COG2884          24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDL   66 (223)
T ss_pred             eecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeec
Confidence            3456788999999999999999999876633   235566655443

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=95.61  E-value=0.037  Score=55.51  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS  265 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~  265 (516)
                      ++.-+++.|+|||||+|.+..+.+.++       +.+|     ...|.+|..+..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~-------~~hl-----~tGdllr~~ia~   56 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFG-------VIHI-----STGDLLRDEIAS   56 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcC-------Cccc-----hhHHHHHHHHhc
Confidence            567788899999999999999999884       4565     345666666654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.61  E-value=0.012  Score=53.88  Aligned_cols=39  Identities=31%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~   60 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWG   60 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEEC
Confidence            3456788999999999999999999876532   23456664

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.60  E-value=0.0096  Score=58.10  Aligned_cols=29  Identities=14%  Similarity=0.043  Sum_probs=24.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-....++.+.|+|||||||+.+.|+.-.
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34567899999999999999999998654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=95.60  E-value=0.012  Score=57.76  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~   65 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEILLDGKDIT   65 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence            3456789999999999999999999977643   2356777665443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.59  E-value=0.013  Score=58.35  Aligned_cols=43  Identities=26%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|-+.++...+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i   64 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQL   64 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence            4456788999999999999999999876532   235577766444

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.59  E-value=0.03  Score=54.63  Aligned_cols=41  Identities=17%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~  252 (516)
                      +++.++++.|+||||||+++.+++.+.-  .. +..+++|..++
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEE   58 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecC
Confidence            4578999999999999999999775431  11 23668885544

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK04296 thymidine kinase; Provisional

Probab=95.58  E-value=0.015  Score=55.97  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=27.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..++++.|+|||||||++..++.+...  ++..+.++.+
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~   38 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKP   38 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEec
Confidence            468999999999999999999887632  2334566644

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.58  E-value=0.014  Score=56.37  Aligned_cols=43  Identities=21%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   66 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDI   66 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeC
Confidence            4456789999999999999999999876532   235677766443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.58  E-value=0.015  Score=60.00  Aligned_cols=44  Identities=25%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ....+.+|.+.|+|||||||++..+...+..  .+....+|+.|..
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~--~~~~v~~i~~D~~   73 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRR--RGLKVAVIAVDPS   73 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            3456788888899999999999998876521  1224567777743

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.57  E-value=0.016  Score=58.84  Aligned_cols=47  Identities=26%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccC-C----CCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-A----ATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~-~----~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+.... .    -.|-+.++...+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence            345678999999999999999999987653200 0    0356778766554

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.56  E-value=0.015  Score=56.72  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|.+.++.
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~~   69 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANYLP---DSGRILVRH   69 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEEec
Confidence            4456789999999999999999999876532   235677763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.56  E-value=0.014  Score=55.93  Aligned_cols=39  Identities=15%  Similarity=0.130  Sum_probs=29.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      -....++.+.|+|||||||+.+.|+.-...   ..|.+.++.
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g   60 (177)
T cd03222          22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDG   60 (177)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECC
Confidence            356678999999999999999999875532   234566643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.56  E-value=0.015  Score=57.24  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~   67 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRP---DEGSVLFGGTDLT   67 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEECCeecC
Confidence            4456789999999999999999999976532   2355777664443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.56  E-value=0.012  Score=58.14  Aligned_cols=43  Identities=21%  Similarity=0.198  Sum_probs=32.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      -....++.+.|+|||||||+.+.|+..+.+   ..|.+.++...+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~   65 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDAT   65 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence            456779999999999999999999976532   2355777665554

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.56  E-value=0.012  Score=57.21  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=36.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i  259 (516)
                      -.....+.|.|||||||||+..-++.-..+   ..|.+.||..+...+.|.
T Consensus        22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~   69 (231)
T COG3840          22 VPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPA   69 (231)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcc
Confidence            345678899999999999999999864422   447789988887655443

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.55  E-value=0.013  Score=59.09  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i   71 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENI   71 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence            4466789999999999999999999876532   235577765444

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.54  E-value=0.014  Score=57.95  Aligned_cols=41  Identities=20%  Similarity=0.077  Sum_probs=31.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++..
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~   65 (253)
T TIGR02323        25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMR   65 (253)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecc
Confidence            4456789999999999999999999876532   2355777653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.54  E-value=0.013  Score=59.31  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .-....++.+.|+|||||||+.+.|+....+   ..|-+.++...
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~   70 (272)
T PRK15056         29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQP   70 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence            4456789999999999999999999876532   23556675543

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.027  Score=60.07  Aligned_cols=106  Identities=18%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc--chHHHHHHhcCCCCChhhHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE--TDVIYRALSSKGHHDDMLQTAELVHQSSTD  285 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~--sD~irk~L~~~~~~~~~~y~~e~v~~~~~~  285 (516)
                      ...+|.+|.+.|+.||||||....++-.+.  ..+-....|-+|.||.  .|.+.. .....  .-+.|.+ .+...-..
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRagAfDQLkq-nA~k~--~iP~ygs-yte~dpv~  170 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAGAFDQLKQ-NATKA--RVPFYGS-YTEADPVK  170 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHH--hcCCceeEEeecccccchHHHHHH-HhHhh--CCeeEec-ccccchHH
Confidence            456899999999999999999999886551  1122567899999984  333221 11100  0111210 11112233


Q ss_pred             HHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHH
Q 010176          286 AASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       286 ~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~l  319 (516)
                      .+.+-.++.-+++++ ||+||+-.+...-..|.+|
T Consensus       171 ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM  205 (483)
T KOG0780|consen  171 IASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEM  205 (483)
T ss_pred             HHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence            445567777888987 4567766666555555444

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.53  E-value=0.025  Score=54.86  Aligned_cols=48  Identities=21%  Similarity=0.331  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV  258 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~  258 (516)
                      ....|..|.+.|++||||||+...++..+..   .....++..|.....|.
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~---~~~v~v~~~~~~~~~D~   65 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD---EVKIAVIEGDVITKFDA   65 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhc---CCeEEEEECCCCCcccH
Confidence            3456889999999999999999999987531   11334555555444444

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.015  Score=57.21  Aligned_cols=44  Identities=18%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++...+.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~   70 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDIT   70 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecC
Confidence            4456789999999999999999999875532   2355777665443

>PHA00729 NTP-binding motif containing protein

Probab=95.53  E-value=0.01  Score=59.25  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..-|+|.|+||+||||+|..|+..+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999886

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.53  E-value=0.015  Score=55.89  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~   65 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVP   65 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEc
Confidence            4567889999999999999999999876532   23445554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.52  E-value=0.013  Score=58.97  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++.
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g   73 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGT   73 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECC
Confidence            4456789999999999999999999876532   234566654

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=95.52  E-value=0.022  Score=59.18  Aligned_cols=28  Identities=29%  Similarity=0.198  Sum_probs=24.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      .|.-+++.||||+||||+++.++.++++
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            3556788999999999999999999854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.52  E-value=0.012  Score=63.02  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|.-+++.||||+|||+++++++.+++
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhC
Confidence            4577799999999999999999999874

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.50  E-value=0.015  Score=58.76  Aligned_cols=44  Identities=16%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~   74 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITIS   74 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecC
Confidence            4456789999999999999999999876532   2356777665553

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.50  E-value=0.018  Score=57.53  Aligned_cols=44  Identities=20%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-++..++.|.|||||||||+...+..-..+   ..+.++|+.-++
T Consensus        26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~   69 (226)
T COG1136          26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDL   69 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEc
Confidence            35567889999999999999999998754322   235677776333

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=95.49  E-value=0.019  Score=55.98  Aligned_cols=40  Identities=13%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      +...++++.|+|||||||++..++.+.-  ..+..+++|+.+
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e   60 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE   60 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC
Confidence            4578999999999999999999987541  123467889776

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.48  E-value=0.015  Score=56.58  Aligned_cols=41  Identities=24%  Similarity=0.219  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|.+.++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~   62 (223)
T TIGR03740        22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGH   62 (223)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence            3456779999999999999999999976532   2355666553

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.48  E-value=0.015  Score=56.21  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+..........|.+.++...+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~   75 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK   75 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence            44567899999999999999999998765300002355777654443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.48  E-value=0.014  Score=63.27  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=25.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      -.|.-|++.||||+||||+++.|+..++.
T Consensus        45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~   73 (441)
T TIGR00390        45 VTPKNILMIGPTGVGKTEIARRLAKLANA   73 (441)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35777999999999999999999999843

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.48  E-value=0.017  Score=59.32  Aligned_cols=40  Identities=23%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -+++.||||+||||+++.++..+...+...+.+.+|+.++
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~   77 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF   77 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence            3678999999999999999988742110123567766444

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.48  E-value=0.017  Score=55.67  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++.-.+
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   72 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDI   72 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEh
Confidence            3456778999999999999999999876532   235577755433

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PLN03025 replication factor C subunit; Provisional

Probab=95.47  E-value=0.02  Score=59.26  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..|. +++.||||+||||++..++.++
T Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         33 NMPN-LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCce-EEEECCCCCCHHHHHHHHHHHH
Confidence            3455 5679999999999999999887

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.47  E-value=0.016  Score=58.45  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.|.|+|||||||+.+.|+.....   -.|-+.++...+.
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~   77 (268)
T PRK10419         34 SLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLA   77 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence            3456789999999999999999999865432   2355777665554

>PTZ00202 tuzin; Provisional

Probab=95.47  E-value=0.075  Score=58.12  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ...|.++++.|++|+||||+++.+...++.     -..++|+-
T Consensus       283 ~~~privvLtG~~G~GKTTLlR~~~~~l~~-----~qL~vNpr  320 (550)
T PTZ00202        283 TAHPRIVVFTGFRGCGKSSLCRSAVRKEGM-----PAVFVDVR  320 (550)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhcCCc-----eEEEECCC
Confidence            345779999999999999999999977643     35667665

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=95.46  E-value=0.012  Score=57.15  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..++++.|||||||||+.+.+...
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHH
Confidence            479999999999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.46  E-value=0.011  Score=65.65  Aligned_cols=29  Identities=34%  Similarity=0.483  Sum_probs=25.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ....++++.||+||||||..+.|++++++
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34569999999999999999999999965

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.46  E-value=0.02  Score=55.07  Aligned_cols=43  Identities=21%  Similarity=0.219  Sum_probs=32.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~   64 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPL   64 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence            4456789999999999999999999876532   235577765444

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.45  E-value=0.013  Score=64.56  Aligned_cols=44  Identities=18%  Similarity=0.071  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-++...+.+.|+|||||||+++.|..-+.+   ..|.+.+|.-+++
T Consensus       357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~i~g~~i~  400 (529)
T TIGR02868       357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDP---LQGEVTLDGVSVS  400 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence            3456788999999999999999999876643   3466888765544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.45  E-value=0.016  Score=58.39  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+.+   ..|.+.++...+
T Consensus        35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   77 (267)
T PRK15112         35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPL   77 (267)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEC
Confidence            4566789999999999999999999876633   235577765444

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=95.44  E-value=0.012  Score=56.71  Aligned_cols=25  Identities=44%  Similarity=0.398  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..+.++++.|+|||||||+.+.++.
T Consensus        27 ~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          27 GSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             cCCeEEEEECCCCCccHHHHHHHHH
Confidence            4467999999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.43  E-value=0.018  Score=58.00  Aligned_cols=49  Identities=22%  Similarity=0.239  Sum_probs=35.8

Q ss_pred             cccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          202 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       202 ~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +......-.+..++.+.||||+||||+.+.++.-...   ..|.+.++...+
T Consensus        19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~~~g~~v   67 (248)
T COG1116          19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVLLDGRPV   67 (248)
T ss_pred             eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc
Confidence            3334445677889999999999999999999864432   335677766655

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.43  E-value=0.016  Score=58.41  Aligned_cols=43  Identities=19%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|.+.++.-.+
T Consensus        31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~   73 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAI   73 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence            3456789999999999999999999876532   235677866544

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.43  E-value=0.022  Score=59.40  Aligned_cols=48  Identities=25%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCC----CceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA----TNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~----~~av~IdaD~ir~s  256 (516)
                      ...|..++|.|+||+||||+++.+...+......    -..++||+......
T Consensus        37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~   88 (365)
T TIGR02928        37 GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL   88 (365)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence            3456678999999999999999998765210000    14577887666543

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.43  E-value=0.015  Score=57.05  Aligned_cols=40  Identities=25%  Similarity=0.145  Sum_probs=30.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++.
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g   83 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRG   83 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence            4456789999999999999999999875432   234566644

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.42  E-value=0.016  Score=57.39  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCC--CCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~--~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+....+...  ..|-+.++...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~   71 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY   71 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence            4456789999999999999999999865532000  0355777665553

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.41  E-value=0.097  Score=56.82  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+.++.+.|+||+||||+...|+...-........-++..|.++
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r  233 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR  233 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence            457899999999999999999998753110001234567777776

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.40  E-value=0.017  Score=57.15  Aligned_cols=41  Identities=24%  Similarity=0.114  Sum_probs=30.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .-....++.+.|+|||||||+.+.|+....+   -.|.+.++..
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~g~   83 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVRVAGL   83 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCE
Confidence            3456789999999999999999999876532   2355666543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.40  E-value=0.015  Score=58.85  Aligned_cols=43  Identities=19%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.++...+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i   71 (280)
T PRK13649         29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLI   71 (280)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence            3456778999999999999999999876532   235677766444

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.038  Score=61.88  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -..|+=++++||||+|||.+|++++.+++.     ...-|++-++
T Consensus       220 v~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~isApei  259 (802)
T KOG0733|consen  220 VRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSISAPEI  259 (802)
T ss_pred             CCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeecchhh
Confidence            356888999999999999999999999954     4455655554

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.40  E-value=0.015  Score=55.22  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      +++|.|++||||||+|..++...+     ....++..-
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~   33 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATA   33 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEcc
Confidence            478899999999999999987742     255677443

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.39  E-value=0.016  Score=58.86  Aligned_cols=44  Identities=20%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|-+.++...+.
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i~~~g~~i~   72 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTITVGGMVLS   72 (279)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence            4456789999999999999999999876533   3456788776654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.38  E-value=0.018  Score=55.32  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+...  ..   ..|.+.++...+.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~   76 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLD   76 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCc
Confidence            44567899999999999999999998765  32   2356777665443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.38  E-value=0.036  Score=64.26  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176          209 ERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK  266 (516)
Q Consensus       209 ~~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~  266 (516)
                      +.+|. .+++.||||+|||++|+.|++.++.     ..+.+|..++...+.. ..|.|.
T Consensus       484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~~~-~~LiG~  536 (758)
T PRK11034        484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTV-SRLIGA  536 (758)
T ss_pred             CCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccccH-HHHcCC
Confidence            34564 6899999999999999999998843     5677887777655443 456553

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.37  E-value=0.011  Score=58.19  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La  233 (516)
                      .|.+..+.|||||||||+.++|.
T Consensus        22 ~~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          22 SPKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.36  E-value=0.017  Score=59.37  Aligned_cols=44  Identities=18%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.-+.+   ..|-+.++...+.
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   58 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRP---TSGTARVAGYDVV   58 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence            4456788999999999999999999976532   2356777665553

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.36  E-value=0.015  Score=55.37  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=19.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.+.+|.||||+||||+...++..+
T Consensus        17 ~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   17 NGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCChHHHHHHHHHHh
Confidence            3478999999999998888877665

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.36  E-value=0.013  Score=57.60  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+  ..   ..|.+.++...+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~   67 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLL   67 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecC
Confidence            44567799999999999999999998753  11   2366788765553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.35  E-value=0.016  Score=63.95  Aligned_cols=29  Identities=34%  Similarity=0.348  Sum_probs=26.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      +.|+-|++.||||+|||++++.++.+.+.
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~  285 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQL  285 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            56788999999999999999999999853

>PRK10646 ADP-binding protein; Provisional

Probab=95.35  E-value=0.023  Score=53.49  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      +.+|++.|.-||||||+++.+++.++.
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            458999999999999999999999864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.35  E-value=0.017  Score=57.61  Aligned_cols=43  Identities=23%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   69 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTI   69 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence            4457789999999999999999999976532   235577766544

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.35  E-value=0.017  Score=57.67  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..+.+   ..|-+.++...+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~   66 (255)
T PRK11231         24 SLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPI   66 (255)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEh
Confidence            3456788999999999999999999876532   235577766444

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.34  E-value=0.013  Score=55.68  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=19.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+++|+||+||||+.+.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            6899999999999999998877

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.34  E-value=0.016  Score=60.79  Aligned_cols=31  Identities=32%  Similarity=0.512  Sum_probs=26.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      |++.|+||+||||+++.|+..+++     ..+.|+.
T Consensus        67 ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~   97 (327)
T TIGR01650        67 VMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNL   97 (327)
T ss_pred             EEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEe
Confidence            888999999999999999999976     4555543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.34  E-value=0.013  Score=57.47  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc-CCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~-~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+...... ....|-+.++...+.
T Consensus         8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~   55 (230)
T TIGR02770         8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL   55 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech
Confidence            34567899999999999999999999765310 001355777665543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.34  E-value=0.019  Score=57.98  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      +++.|+||+||||+|+.|+..++.     ..+.++..
T Consensus        24 vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~   55 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGD   55 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCC
Confidence            456899999999999999987743     55667554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=95.33  E-value=0.023  Score=58.48  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++...+
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   68 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPV   68 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            4456789999999999999999999875532   235577765444

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.32  E-value=0.014  Score=55.94  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+..... ....|-+.++...+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~   73 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPL   73 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEeh
Confidence            3456789999999999999999999863210 00235577765443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4240 Predicted kinase [General function prediction only]

Probab=95.32  E-value=0.051  Score=54.52  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS  265 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~  265 (516)
                      +..+|.++.++||-||||||++..|...+-..+ ......++-|++--....+-+|..
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg-~ert~~lSLDDlYlthadrl~La~  102 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKG-LERTATLSLDDLYLTHADRLRLAR  102 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhc-ccceEEeehhhhhcchHHHHHHHH
Confidence            567899999999999999999998876553211 124567777777554444444443

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.32  E-value=0.019  Score=55.89  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~i   75 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTA   75 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCEEc
Confidence            3456778999999999999999999876532   235577765444

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.31  E-value=0.013  Score=58.15  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++.-.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   75 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI   75 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence            4456789999999999999999999864310 00 0125577766444

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.29  E-value=0.021  Score=52.54  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -....++.+.|+|||||||+.+.|...+..   ..+-+.++...+
T Consensus        22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~   63 (157)
T cd00267          22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDI   63 (157)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEc
Confidence            345578999999999999999999876532   235566755444

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=95.29  E-value=0.018  Score=61.29  Aligned_cols=47  Identities=13%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      .-.+..++.+.|+|||||||+.+.|......   ..|-++++...+...+
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~   61 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQS   61 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCC
Confidence            4466789999999999999999999976643   3466888887766544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.29  E-value=0.018  Score=58.76  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+.+   ..|-+.++...+.
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   72 (287)
T PRK13637         29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDIT   72 (287)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEECCEECC
Confidence            3456789999999999999999999876533   2356788776654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.28  E-value=0.017  Score=58.79  Aligned_cols=43  Identities=21%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++.-.+
T Consensus        33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i   75 (289)
T PRK13645         33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAI   75 (289)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEc
Confidence            3456779999999999999999999876532   235577765433

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.28  E-value=0.019  Score=56.10  Aligned_cols=40  Identities=20%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +..+++.|++|+|||++++.+......  .+..++++++..+
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~~~~~i~~~~~   81 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASY--GGRNARYLDAASP   81 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEehHHh
Confidence            456789999999999999999876521  1335678866554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.28  E-value=0.022  Score=54.84  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+...  ..   ..|-+.+|...+..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~   68 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITD   68 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCc
Confidence            44567899999999999999999998752  11   23557887766654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.26  E-value=0.018  Score=54.88  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|+++|+||+||||++..+++.+
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHH
Confidence            45668999999999999999999876

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=95.26  E-value=0.019  Score=58.32  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|.+.++...+.
T Consensus        32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~   75 (280)
T PRK13633         32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTS   75 (280)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEecc
Confidence            4456789999999999999999999876532   3366788765553

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=95.26  E-value=0.019  Score=57.25  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..+..   ..|-+.++...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~   66 (256)
T TIGR03873        23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLH   66 (256)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcc
Confidence            3456789999999999999999999876532   2355777665554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.26  E-value=0.02  Score=58.06  Aligned_cols=44  Identities=18%  Similarity=0.037  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.|.|+|||||||+.+.|+..+.+   ..|.+.++...+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   67 (274)
T PRK13644         24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTG   67 (274)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECC
Confidence            4456789999999999999999999876532   3466778765554

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=95.25  E-value=0.018  Score=57.95  Aligned_cols=43  Identities=21%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|.+.++...+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~   71 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHI   71 (265)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEh
Confidence            4456789999999999999999999876532   235577765444

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=95.25  E-value=0.023  Score=50.67  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |++.|.+|+||||++..++..+.  ..+....+||+|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~--~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLA--EKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCc
Confidence            68899999999999999987762  2233567788887

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.25  E-value=0.033  Score=56.70  Aligned_cols=49  Identities=20%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i  259 (516)
                      .-....++++.|+|||||||+.+.+-.-...   ..|-++||.-++...|+.
T Consensus        23 ~I~~gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~i~g~~i~~~d~~   71 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEILIDGEDISDLDPV   71 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHHHHHHhcccCC---CCceEEECCeecccCCHH
Confidence            3456778899999999999999988654422   347799999999888765

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.24  E-value=0.076  Score=54.57  Aligned_cols=96  Identities=21%  Similarity=0.324  Sum_probs=54.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc-cc------cc---h-HHHHHHhcC---CCCChhh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA-FK------ET---D-VIYRALSSK---GHHDDML  273 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~-ir------~s---D-~irk~L~~~---~~~~~~~  273 (516)
                      ..++|.+|++.|--||||||+.++|-..+...+.+  ..+||-|- ++      +-   | +-||+....   |+ +.++
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p--pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP-NGgI   91 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP--PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP-NGGI   91 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCC--CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC-Ccch
Confidence            45789999999999999999999998877542222  24555542 11      11   1 234443332   21 1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCC
Q 010176          274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGT  306 (516)
Q Consensus       274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaT  306 (516)
                      -++-...-.-.+....++++....-..+++|+.
T Consensus        92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTP  124 (366)
T KOG1532|consen   92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDTP  124 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCC
Confidence            332221222223334567777666668899974

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.23  E-value=0.016  Score=50.02  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|++||||||+.+.|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6788999999999999998765

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.22  E-value=0.015  Score=61.78  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=22.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -.+|+++||+||||||+.+.|+..+
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999998765

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.21  E-value=0.032  Score=57.62  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=34.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i  259 (516)
                      .....++-+.|+|||||||+...+...+..   ..+..+|..|.-...|..
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~---~~~~~VI~gD~~t~~Da~  148 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD---SVPCAVIEGDQQTVNDAA  148 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhcc---CCCEEEECCCcCcHHHHH
Confidence            345678889999999999999999887632   235677877754433433

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.21  E-value=0.019  Score=54.02  Aligned_cols=26  Identities=31%  Similarity=0.580  Sum_probs=22.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +-..+|+.|.||+||||+..+|+..-
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~G   33 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARAG   33 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHcC
Confidence            33688999999999999999999764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.20  E-value=0.021  Score=57.90  Aligned_cols=44  Identities=18%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|-+.++.-.+.
T Consensus        26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   69 (277)
T PRK13652         26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPIT   69 (277)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            4466789999999999999999999876532   2355777665443

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=95.20  E-value=0.02  Score=56.45  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      -....++.+.|+|||||||+.+.|+..+..   ..|.++++...+.
T Consensus        22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~   64 (235)
T cd03299          22 VERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDIT   64 (235)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcC
Confidence            345779999999999999999999876533   2356777665443

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.19  E-value=0.031  Score=54.55  Aligned_cols=43  Identities=16%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~  252 (516)
                      +...++.+.|+|||||||++..++......    +...++++|+.+.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            457899999999999999999997543110    1124678886654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.19  E-value=0.022  Score=56.54  Aligned_cols=38  Identities=34%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      +...+..|-|||||||||+.+.|..++.+   ..|-+.++.
T Consensus        25 ~pGev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~~~g   62 (259)
T COG4559          25 RPGEVLAILGPNGAGKSTLLKALSGELSP---DSGEVTLNG   62 (259)
T ss_pred             cCCcEEEEECCCCccHHHHHHHhhCccCC---CCCeEeeCC
Confidence            44567888999999999999999998854   224455533

>PF13479 AAA_24: AAA domain

Probab=95.19  E-value=0.016  Score=56.58  Aligned_cols=32  Identities=22%  Similarity=0.551  Sum_probs=26.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +|.-++|.|+||+||||++..+ +         +..+||.|.
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~-~---------k~l~id~E~   33 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL-P---------KPLFIDTEN   33 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC-C---------CeEEEEeCC
Confidence            5788999999999999999987 1         457887654

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=95.19  E-value=0.03  Score=56.91  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=37.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccC-------------------CCCceEEEeCcccccch
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-------------------AATNAVVVEADAFKETD  257 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~-------------------~~~~av~IdaD~ir~sD  257 (516)
                      +.|..+++.||||+||||++..|+..+....                   ..++...+++.+-+..|
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~   88 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID   88 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence            4577899999999999999999999886311                   13577778887776644

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=95.19  E-value=0.023  Score=61.94  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=25.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|.-+++.||||+|||++++.++.++.
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4577889999999999999999999874

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.19  E-value=0.021  Score=57.44  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~   76 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLY   76 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcc
Confidence            4456789999999999999999999876532   2355777665443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.18  E-value=0.022  Score=57.09  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=28.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ....++.+.|+|||||||+.+.|+....+   ..|.+.++.
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p---~~G~i~~~g   60 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKP---DEGDIEIEL   60 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEEECC
Confidence            45678999999999999999999876532   224455543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.18  E-value=0.021  Score=57.26  Aligned_cols=29  Identities=28%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-....++.+.|+|||||||+.+.|+..+
T Consensus        26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44667899999999999999999998754

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.17  E-value=0.023  Score=61.21  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|.-+++.||||+|||++++.++.+..
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            4578899999999999999999998874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.15  E-value=0.017  Score=57.38  Aligned_cols=47  Identities=17%  Similarity=0.187  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+..... ++ ...|-+.++...+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence            3456789999999999999999999876421 00 01355777665543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.15  E-value=0.023  Score=57.81  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|.++++.-.+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~   72 (279)
T PRK13650         29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQIIIDGDLLT   72 (279)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence            3456788999999999999999999876532   3456778765553

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=95.15  E-value=0.018  Score=60.81  Aligned_cols=45  Identities=18%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.++...+..
T Consensus        24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~i~g~~i~~   68 (353)
T PRK10851         24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVSR   68 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCC
Confidence            3456789999999999999999999976533   33667887766543

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.15  E-value=0.032  Score=58.86  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..|..++|.|+||+||||+++.+...+.-....-..++||+.....
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~   98 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT   98 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence            4566678999999999999999987662100012457788766654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.15  E-value=0.018  Score=60.79  Aligned_cols=46  Identities=15%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|.+.+|...+...
T Consensus        28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~   73 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQIFIDGEDVTHR   73 (351)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCC
Confidence            4456779999999999999999999875533   336688877666443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.15  E-value=0.019  Score=55.39  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CCC-EEEEEecCCCCCHHHHHHHHH
Q 010176          210 RSP-VLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       210 ~~P-~LIli~G~sGSGKSTlA~~La  233 (516)
                      ..+ .++++.|||||||||+.+.+.
T Consensus        25 ~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          25 GENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             CCCceEEEEECCCCCChHHHHHHHH
Confidence            344 689999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.14  E-value=0.018  Score=61.13  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+|.+|.|+|+|||||||++..|.+.+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3689999999999999999999998884

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.13  E-value=0.2  Score=52.70  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccccc-chHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKE-TDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~-sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ....|+++|++||||||+.++|+.....   ....+.| |+.++.- .++....+... .....  ....       .+.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~---~~ri~tiEd~~El~l~~~~n~~~~~~~-~~~~~--~~~~-------~~~  225 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPA---IERLITVEDAREIVLSNHPNRVHLLAS-KGGQG--RAKV-------TTQ  225 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCC---CCeEEEecCCCccccccCCCEEEEEec-CCCCC--cCcC-------cHH
Confidence            3466999999999999999999987742   1223334 1112210 00000000000 00000  0000       123


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      .++..+|...-++|+=+-....+-...+. .+..                                            ..
T Consensus       226 ~ll~~~LR~~PD~IivGEiR~~ea~~~l~-a~~t--------------------------------------------Gh  260 (332)
T PRK13900        226 DLIEACLRLRPDRIIVGELRGAEAFSFLR-AINT--------------------------------------------GH  260 (332)
T ss_pred             HHHHHHhccCCCeEEEEecCCHHHHHHHH-HHHc--------------------------------------------CC
Confidence            47788888898888888777764332221 1111                                            01


Q ss_pred             CCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhh
Q 010176          369 KPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNS  404 (516)
Q Consensus       369 ~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~  404 (516)
                      .|   .+--+. .++..++.|......++|..++.+.
T Consensus       261 ~G---~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~  294 (332)
T PRK13900        261 PG---SISTLHADSPAMAIEQLKLMVMQAGLGMPPDQ  294 (332)
T ss_pred             Cc---EEEEEecCCHHHHHHHHHHHHHhccCCCCHHH
Confidence            11   122333 3789999999998888887776543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.13  E-value=0.016  Score=57.74  Aligned_cols=27  Identities=30%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .|.+..|.|+|||||||+.++|.--++
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            478899999999999999999987664

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.11  E-value=0.017  Score=59.68  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----chHHHHH-HhcC-C---CC-ChhhHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----TDVIYRA-LSSK-G---HH-DDMLQTA  276 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----sD~irk~-L~~~-~---~~-~~~~y~~  276 (516)
                      ...+|..|-|+|+||+||||+...|..++.-.|+.-..+-|||-.-+.     -|-+|-. +... +   ++ +.--...
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG  126 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG  126 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence            446788899999999999999999998874433333445566633221     1222211 1100 0   00 0000111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHHHHhhhhhccccccccc
Q 010176          277 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK  335 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~  335 (516)
                      .. .+.    ....+.-+=..|++ ||+||+--.++..+    .+.-++.-.|.+-||+-
T Consensus       127 Gl-S~a----t~~~i~~ldAaG~DvIIVETVGvGQsev~----I~~~aDt~~~v~~pg~G  177 (323)
T COG1703         127 GL-SRA----TREAIKLLDAAGYDVIIVETVGVGQSEVD----IANMADTFLVVMIPGAG  177 (323)
T ss_pred             hh-hHH----HHHHHHHHHhcCCCEEEEEecCCCcchhH----HhhhcceEEEEecCCCC
Confidence            11 222    22355556667998 56788777665543    33334556677766653

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=95.11  E-value=0.022  Score=59.89  Aligned_cols=44  Identities=23%  Similarity=0.228  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.-..+   ..|-+.++...+.
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I~~~g~~i~   70 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTLIRCINLLERP---TSGRVLVDGQDLT   70 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence            4456789999999999999999999876532   2356777765554

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.10  E-value=0.018  Score=60.73  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|.-+++.||||+||||+++.++.++.
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            4567799999999999999999999884

Many proteins may score above the trusted cutoff because an internal

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.10  E-value=0.022  Score=57.72  Aligned_cols=40  Identities=20%  Similarity=0.025  Sum_probs=29.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .-....++.+.|+|||||||+.+.|+..+.+   ..|-+.++.
T Consensus        46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p---~~G~I~~~g   85 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSP---TVGKVDRNG   85 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECC
Confidence            4567789999999999999999999876532   224455543

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.09  E-value=0.019  Score=57.71  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...++++|++||||||+.+.++....
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             ceEEEEECCCccccchHHHHHhhhcc
Confidence            57899999999999999999998874

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.09  E-value=0.026  Score=56.96  Aligned_cols=40  Identities=13%  Similarity=0.188  Sum_probs=29.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      +...+++|.|+||+||||++.+++...-  ..+..+.+++.+
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~E   73 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVE   73 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEec
Confidence            4578999999999999999999876531  123466778554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=95.09  E-value=0.024  Score=56.58  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc-CCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~-~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+...... ....|-+.++...+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i   71 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV   71 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence            44567899999999999999999998754210 00125577765444

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=95.09  E-value=0.021  Score=55.98  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La  233 (516)
                      ..++.+++.||||+||||+.+.+.
T Consensus        27 ~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          27 GGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             CCceEEEEECCCCCChHHHHHHHH
Confidence            335899999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=95.08  E-value=0.019  Score=55.56  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+ ++.+.|+|||||||+.+.|.--+
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            334 88999999999999999997443

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.08  E-value=0.022  Score=57.70  Aligned_cols=43  Identities=19%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   ..|-+.++.-.+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~   66 (275)
T PRK13639         24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKP---TSGEVLIKGEPI   66 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence            4456789999999999999999999875532   235677766554

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.07  E-value=0.023  Score=58.09  Aligned_cols=43  Identities=21%  Similarity=0.145  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|+|||||||+.+.|+..+..   ..|.+.++.-.+
T Consensus        28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i   70 (288)
T PRK13643         28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDIVV   70 (288)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence            4567789999999999999999999976533   346677866544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.07  E-value=0.018  Score=57.56  Aligned_cols=46  Identities=22%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++.-.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~   73 (258)
T PRK14241         26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL   73 (258)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence            4456789999999999999999999975421 00 0135577765443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=95.07  E-value=0.031  Score=57.58  Aligned_cols=40  Identities=23%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .-+...++.+.|+|||||||+.+.|+.-...   -.|-+.++.
T Consensus        27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G   66 (293)
T COG1131          27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLG   66 (293)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcC
Confidence            4566789999999999999999999976633   235566655

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.07  E-value=0.017  Score=63.65  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ..|.-+++.||||+|||++++.++.+.+.     ..+.+++.+
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~-----~~~~i~~~~  123 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----PFFSISGSD  123 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCC-----CeeeccHHH
Confidence            45667999999999999999999988743     345554433

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.06  E-value=0.018  Score=57.72  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+ +. ...|.+.++...+
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~   82 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI   82 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence            3456789999999999999999999865420 00 0125577765444

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=95.06  E-value=0.025  Score=56.59  Aligned_cols=44  Identities=14%  Similarity=0.140  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.....   ..|-+.++...+.
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~   86 (257)
T cd03288          43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDIS   86 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhh
Confidence            4456789999999999999999999876533   2355777664443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.06  E-value=0.018  Score=57.16  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=24.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .-....++.+.|+|||||||+.+.|+.-
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         27 DFNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4456789999999999999999999864

>CHL00181 cbbX CbbX; Provisional

Probab=95.06  E-value=0.021  Score=58.75  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-+++.|+||+||||+|+.++..+
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4447889999999999999998765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.05  E-value=0.018  Score=57.06  Aligned_cols=46  Identities=15%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... + ....|-+.++...+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~   72 (250)
T PRK14262         25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI   72 (250)
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            4456789999999999999999999854320 0 00125577766544

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=95.04  E-value=0.025  Score=57.93  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=25.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .-....++.+.|+|||||||+.+.|+..+.
T Consensus        59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~   88 (282)
T cd03291          59 KIEKGEMLAITGSTGSGKTSLLMLILGELE   88 (282)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446678999999999999999999987653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=95.02  E-value=0.025  Score=62.97  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ++...+.+.|+|||||||+++.|+.-+.+   ..|-+.+|..++..
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~  409 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYDI---DEGEILLDGHDLRD  409 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCC---CCceEEECCEEhhh
Confidence            45678899999999999999999987644   34668887766654

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.02  E-value=0.026  Score=57.26  Aligned_cols=44  Identities=25%  Similarity=0.123  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|+.-+.+   ..|-+.++...+.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   70 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRVKVMGREVN   70 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            3456789999999999999999999876532   2356778775554

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.02  E-value=0.074  Score=53.29  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++-.++++.|+||||||+++.+++-+.-  ..+...++|..|+
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e   61 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEE   61 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecC
Confidence            4567899999999999999999877652  2234567884444

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.00  E-value=0.029  Score=56.44  Aligned_cols=44  Identities=18%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+.+.|..-...   ..|.++++..++.
T Consensus        26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~   69 (258)
T COG3638          26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQIT   69 (258)
T ss_pred             EeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchh
Confidence            4456788999999999999999999874433   3456888886664

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.00  E-value=0.031  Score=56.37  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-.+..+..+.|||||||||+.+.+...+.+   ..|.++|+..++.+
T Consensus        30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P---~~GeI~i~G~~i~~   74 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTLLRLILGLLRP---DKGEILIDGEDIPQ   74 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHHHHHHhccCCC---CCCeEEEcCcchhc
Confidence            4567788899999999999999999876643   34678888877764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.99  E-value=0.02  Score=56.87  Aligned_cols=46  Identities=22%  Similarity=0.150  Sum_probs=31.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..... + ....|-+.++...+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~   73 (251)
T PRK14251         26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI   73 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence            3456788999999999999999999975420 0 00135566755443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.98  E-value=0.027  Score=57.38  Aligned_cols=47  Identities=21%  Similarity=0.139  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.|.|+|||||||+.+.|+..+.+.....|-+.++...+.
T Consensus        29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~   75 (282)
T PRK13640         29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT   75 (282)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence            44567899999999999999999998765321000156778776654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=94.97  E-value=0.021  Score=60.58  Aligned_cols=44  Identities=18%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++...+.
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p---~~G~I~~~g~~i~   68 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI---TSGDLFIGEKRMN   68 (369)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence            4456788999999999999999999875532   2355777665543

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.97  E-value=0.02  Score=56.90  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.|.|+|||||||+.+.|+..... +. ...|-+.++...+
T Consensus        27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i   74 (251)
T PRK14244         27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV   74 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence            4456789999999999999999999865420 00 0125577765443

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.96  E-value=0.02  Score=56.77  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++...+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~   72 (250)
T PRK14240         25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI   72 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            4456789999999999999999999864310 00 0125577765444

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=94.95  E-value=0.02  Score=57.31  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..........|.+.++.-.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~   71 (262)
T PRK09984         26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV   71 (262)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence            3456789999999999999999999876532000125677766444

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.94  E-value=0.028  Score=61.01  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +.++++.||+|+||||++..|+..+-....+..+.+|+.|.++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            56888899999999999999887652001123578899998863

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.94  E-value=0.02  Score=57.21  Aligned_cols=46  Identities=20%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+..... +. .-.|.+.++...+
T Consensus        34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~   81 (259)
T PRK14274         34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI   81 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence            4456788999999999999999999865420 00 0025577765444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=94.94  E-value=0.024  Score=52.56  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +.+.|++||||||++..++..+..  .+....+++.|.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~--~g~~v~ii~~D~   37 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRA--RGKRVAVLAIDP   37 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeCC
Confidence            677899999999999999876622  233566777774

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=94.94  E-value=0.6  Score=50.70  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-----ChhhHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQS  282 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-----~~~~y~~e~v~~~  282 (516)
                      ....|.+|+|.|.|.+|||.++..+-.-+.|-+  -+.-+.|.-+      .+........+     ++-..+... ..+
T Consensus        24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~--~~tk~fn~g~------yrr~~~~~~~s~~ff~p~n~~~~~l-r~~   94 (438)
T KOG0234|consen   24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLG--VNTKVFNVGE------YRREAVKKVDSEPFFLPDNAEASKL-RKQ   94 (438)
T ss_pred             ccCCceEEEEecCCccCcchhhhhHHHHHHhhc--cccccccHHH------HHHHHhcccccccccccCChhhhhh-hHH
Confidence            346799999999999999999999988776621  1122232222      22222221000     111111111 233


Q ss_pred             HHHH-HHHHHHHHH-hCCCcEEEeCCCCChHHHHHHHHHHH
Q 010176          283 STDA-ASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMAR  321 (516)
Q Consensus       283 ~~~~-a~~la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lAr  321 (516)
                      +... +..+..-.. ..|+..|+|+|..++..|..++.+++
T Consensus        95 ~a~~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~  135 (438)
T KOG0234|consen   95 LALLALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAE  135 (438)
T ss_pred             HHHHHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHh
Confidence            2222 223333333 46899999999999999999888874

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.94  E-value=0.02  Score=57.52  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... + ....|.+.++...+
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   90 (268)
T PRK14248         43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI   90 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence            4456789999999999999999999864310 0 00125577766554

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.93  E-value=0.027  Score=57.43  Aligned_cols=43  Identities=23%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-...   ..|-+.+|.-.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i~~~g~~i   71 (286)
T PRK13646         29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKP---TTGTVTVDDITI   71 (286)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence            3455678999999999999999999876532   235677766444

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=94.93  E-value=0.036  Score=55.31  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|.++|.|||||||+++.+.+..
T Consensus         2 iI~i~G~~gsGKstva~~~~~~g   24 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIENY   24 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcC
Confidence            78999999999999999997664

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=94.93  E-value=0.034  Score=55.18  Aligned_cols=41  Identities=20%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++..++++.|+|||||||++.+++-+..  ..+...++|..++
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee   59 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE   59 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC
Confidence            4678999999999999999998765431  1134567885544

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.93  E-value=0.021  Score=56.66  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++...+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~   74 (252)
T PRK14239         27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI   74 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence            3456789999999999999999999754210 00 0025577765444

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=94.93  E-value=0.019  Score=56.72  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir~  255 (516)
                      .-.+..++.+.|+|||||||+.+.|+...  ..   ..|-+.++...+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~   69 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLE   69 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCcccc
Confidence            34567899999999999999999998763  11   23557776655543

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.92  E-value=0.019  Score=53.74  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.+.|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.92  E-value=0.021  Score=56.82  Aligned_cols=28  Identities=29%  Similarity=0.280  Sum_probs=24.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .-....++.+.|+|||||||+.+.|+.-
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         28 SIPKNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3456789999999999999999999853

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.92  E-value=0.018  Score=50.15  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~  237 (516)
                      |.+.|+||.|||++++.|+..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            56889999999999999988763

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.92  E-value=0.045  Score=60.66  Aligned_cols=30  Identities=27%  Similarity=0.250  Sum_probs=26.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.+.|.++++.||||+||||+++.++..+.
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345688899999999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	516
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	9e-15
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	4e-05

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 73.4 bits (179), Expect = 9e-15
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 64/239 (26%)

Query: 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259
             +     S + P+ +L+GG  GAGK+T+ +   KE        N V+++ D+F+     
Sbjct: 20  RSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE-----FQGNIVIIDGDSFRSQHPH 74

Query: 260 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319
           Y  L  +   D      E     +     SL+    + G +++++GTL  V   ++T  +
Sbjct: 75  YLELQQEYGKDS----VEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL 130

Query: 320 ARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVV 379
            +N                                              K Y ++L  + 
Sbjct: 131 LKN----------------------------------------------KGYEVQLALIA 144

Query: 380 CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE---------LVDNARLY 429
               L+ +  + R   +       ++    +       +  +         + +  ++Y
Sbjct: 145 TKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIY 203

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259
           + ++    +  SP   L+GG  G+GK+++   I +E        N +V++ D FK+    
Sbjct: 21  EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE-----TQGNVIVIDNDTFKQQHPN 75

Query: 260 YRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319
           +  L      D      + V   S     +++    ++G +++++GT        QT  M
Sbjct: 76  FDELVKLYEKDV----VKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 131

Query: 320 ARN 322
            + 
Sbjct: 132 LQA 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 73/551 (13%), Positives = 155/551 (28%), Gaps = 179/551 (32%)

Query: 34  QKYKYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQ--LCKLAYEYLK 91
            +Y+Y    +DI  +            + F           D  + P+  L K   +++ 
Sbjct: 14  HQYQY----KDILSV----------FEDAF----VDNFDCKDVQDMPKSILSKEEIDHII 55

Query: 92  KSKGCEDNIYEYFSK-EAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEK 150
            SK         F    ++ E +  K VEE  R  ++Y    +     ++S + + + + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INY---KF-----LMSPIKTEQRQP 105

Query: 151 KTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSER 210
               + +I    R     +V     + R+     +    +R+             AL E 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPYLKLRQ-------------ALLEL 147

Query: 211 SPVLLLMGGGM-GAGKST----VLKDIMKES------FW---SGAATNAVVVE--ADAFK 254
            P   ++  G+ G+GK+     V      +       FW       +   V+E       
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 255 ETDVIYRALSSKG----HHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWV 310
           + D  + + S            +Q        S    + LLV  L    +V         
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--L---LNV-------QN 255

Query: 311 PFVEQTIAMARNVH-K----SRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365
                    A N+  K    +R++     +V +  +        +          E + +
Sbjct: 256 A----KAWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 366 FSRK----------------PYRIELVGVVCDAYLAVVR-GIRRAIMMKRAVRVNSQLKS 408
             +                 P R+ ++          +R G+      K  V  +     
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIA-------ESIRDGLATWDNWKH-VNCDKLTTI 358

Query: 409 HKRFANAF------RNYCELV---DNARLYCTNAVGGPPRLIA--WKDGDSN---LLVDS 454
            +   N        + +  L     +A +        P  L++  W D   +   ++V+ 
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHI--------PTILLSLIWFDVIKSDVMVVVNK 410

Query: 455 DEIKCLTRVGSLNADA-DSVYELHSEPNPIFEPGSVWNDIVLCPSRAGLQLELRTSIKK- 512
                L     +     +S   +                         + LEL+  ++  
Sbjct: 411 LHKYSL-----VEKQPKESTISIP-----------------------SIYLELKVKLENE 442

Query: 513 -------IENY 516
                  +++Y
Sbjct: 443 YALHRSIVDHY 453

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG 267
            +    +LL+ G  G+GKST+ + +             V   +D               G
Sbjct: 5   DDLGGNILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDL-------WGYIKHG 52

Query: 268 HHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH--- 324
             D  L  +   ++     A+ +      EG  VI+DG +    ++    A+AR +H   
Sbjct: 53  RIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVR-PDWLPAFTALARPLHYIV 111

Query: 325 ----------KSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ 358
                     +   R G       D  V+ +   Q  +      
Sbjct: 112 LRTTAAEAIERCLDRGGDSLS---DPLVVADLHSQFADLGAFEH 152

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 34/193 (17%)

Query: 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD 271
             ++L  G  G+GKST  ++ + ++           +  D ++++ + +       +   
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYRQSIMAHEERDEYKYTKK 55

Query: 272 MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH------- 324
                 +V     D A S+L    +  + VI+  T             A+          
Sbjct: 56  KEG---IVTGMQFDTAKSIL-YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKV 111

Query: 325 --------KSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELV 376
                     R        V  D  V+ + ++         ++     V++  P + + V
Sbjct: 112 FDVPWTELVKRNSKRGTKAVPID--VLRSMYKS-------MREYLGLPVYNGTPGKPKAV 162

Query: 377 GVVCDAYLAVVRG 389
               D  LA + G
Sbjct: 163 IFDVDGTLAKMNG 175

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD 270
           +P L+++ G    GK+T+ + +              ++  DAFKE        S +    
Sbjct: 4   TPALIIVTGHPATGKTTLSQALATG-------LRLPLLSKDAFKEVMFDGLGWSDREWSR 56

Query: 271 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
            +  TA                T L  G+ +IM+         E+   +     
Sbjct: 57  RVGATAI-------MMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAP 103

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD 271
             ++L  G  G+GKST  ++ + ++           +  D ++++ + +       +   
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYRQSIMAHEERDEYKYTKK 55

Query: 272 MLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324
                 +V     D A S+L    +  + VI+  T             A+   
Sbjct: 56  KEG---IVTGMQFDTAKSIL-YGGDSVKGVIISDTNLNPERRLAWETFAKEYG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	516
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.75
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.57
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.56
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.48
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.44
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.41
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.34
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.3
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.26
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.26
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.25
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.25
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.24
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.24
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.24
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.22
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.21
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.18
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.17
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.98
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.96
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.95
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.94
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.92
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.92
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.9
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.87
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.86
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.86
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.85
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.83
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.81
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.81
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.8
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.79
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.78
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.74
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.74
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.72
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.72
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.71
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.69
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.67
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.66
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.66
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.65
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.63
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.62
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.62
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.61
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.58
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.56
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.54
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.54
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.54
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.5
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.5
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.5
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.49
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.48
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.46
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.45
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.44
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.41
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.41
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.38
1via_A	175	Shikimate kinase; structural genomics, transferase	98.37
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.34
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.33
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.31
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.31
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.3
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.29
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.28
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.23
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.22
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.21
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.21
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.2
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.17
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.16
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.15
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.12
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.12
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.11
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.1
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.06
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.04
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.0
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.96
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.93
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.92
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.92
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.83
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.81
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.71
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.66
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.57
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.4
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.3
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.16
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.11
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.09
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.94
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.88
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.86
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.73
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.73
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.71
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.7
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.64
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.57
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.55
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.52
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.51
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.48
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.47
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.43
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.43
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.43
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.42
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.4
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.39
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.39
3bos_A	242	Putative DNA replication factor; P-loop containing	96.38
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.38
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.37
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.36
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.33
2og2_A	359	Putative signal recognition particle receptor; nuc	96.33
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.29
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.27
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.27
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.26
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.26
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.23
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.22
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.21
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.2
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.19
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.19
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.18
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	96.18
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.16
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.14
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.13
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.12
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.12
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.11
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.1
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.09
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.06
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.05
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.03
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.03
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.02
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.0
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.99
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.97
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.95
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	95.95
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.93
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.93
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.93
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.93
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.92
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.91
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.91
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.9
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.89
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.89
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.88
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.87
1g6h_A	257	High-affinity branched-chain amino acid transport	95.85
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.85
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.85
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.85
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.83
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.8
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.79
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.79
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.77
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.77
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.76
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.75
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.74
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.72
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.7
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.7
2xxa_A	433	Signal recognition particle protein; protein trans	95.69
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.68
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.62
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.62
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.61
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.61
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.55
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.54
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.53
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.49
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.48
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.45
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.41
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.41
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.4
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.39
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.37
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.36
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.35
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.32
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.32
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.32
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.3
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.29
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.29
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.28
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.23
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.23
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.23
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.21
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.21
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.18
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.17
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.16
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.16
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.16
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	95.16
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.13
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.13
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.13
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.1
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.1
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.09
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.08
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.07
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.99
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.92
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.9
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.81
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.8
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.8
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.74
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.74
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.73
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.67
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.67
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.66
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.64
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.64
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.57
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.55
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.54
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.52
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.51
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.5
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.49
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.48
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.46
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.41
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.38
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.31
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.31
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.26
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.26
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.24
3pvs_A	447	Replication-associated recombination protein A; ma	94.23
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.22
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.21
3co5_A	143	Putative two-component system transcriptional RES	94.2
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.17
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	94.16
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.15
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.14
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.14
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.11
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.11
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.06
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.05
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.04
2fna_A	357	Conserved hypothetical protein; structural genomic	94.03
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.02
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.95
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.92
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.87
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	93.83
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	93.81
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	93.72
2qgz_A	308	Helicase loader, putative primosome component; str	93.65
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.65
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.54
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.53
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.47
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.43
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.39
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.38
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.37
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.28
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.26
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.21
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.2
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	93.18
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.18
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.17
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.16
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.09
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.08
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.07
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.07
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.06
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	93.03
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.03
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.0
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	92.99
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.98
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	92.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.94
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.91
1e69_A	322	Chromosome segregation SMC protein; structural mai	92.9
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	92.87
2r6a_A	454	DNAB helicase, replicative helicase; replication,	92.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.81
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	92.81
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.81
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	92.81
3io5_A	333	Recombination and repair protein; storage dimer, i	92.78
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.77
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.77
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	92.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.71
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	92.7
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.68
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	92.66
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.65
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	92.65
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.6
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	92.59
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	92.57
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.57
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	92.56
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	92.56
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.55
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.55
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.5
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.46
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.43
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.43
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.4
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.38
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.38
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	92.38
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.35
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.34
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.32
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	92.31
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	92.3
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	92.26
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.19
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.18
3end_A	307	Light-independent protochlorophyllide reductase ir	92.16
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.13
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	92.12
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	92.11
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	92.1
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.1
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.1
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.09
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.04
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.01
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.0
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	91.97
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.93
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	91.9
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	91.9
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.88
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.87
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.86
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.86
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.85
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	91.83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.74
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.73
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	91.7
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.69
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	91.69
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	91.68
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	91.67
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.65
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.61
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.6
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.55
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	91.53
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	91.41
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	91.39
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.38
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.34
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.32
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	91.28
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.13
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	91.12
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.11
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.06
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	91.02
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	90.98
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	90.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	90.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	90.86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	90.84
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.81
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.8
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	90.79
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.76
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	90.69
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	90.69
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.67
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.64
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	90.64
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.62
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	90.58
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	90.55
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	90.53
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	90.5
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.43
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	90.41
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.41
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.4

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.75  E-value=2e-17  Score=166.38  Aligned_cols=169  Identities=19%  Similarity=0.262  Sum_probs=123.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHH-H
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTD-A  286 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~-~  286 (516)
                      ...+|.+|+|+|+|||||||+++.|++.+.     .+.++|++|.++...+.+..+...    ...+..+. +...+. .
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~----~~~~a~~~-~~~~~~~~   98 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL----YEKDVVKH-VTPYSNRM   98 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH----HGGGCHHH-HHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH----ccchhhhh-hhHHHHHH
Confidence            566799999999999999999999998872     256899888876542222221110    00011122 122222 2


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF  366 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~  366 (516)
                      ....+..+++.|.+||+|+++....++..+.+.+                                              
T Consensus        99 ~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~----------------------------------------------  132 (287)
T 1gvn_B           99 TEAIISRLSDQGYNLVIEGTGRTTDVPIQTATML----------------------------------------------  132 (287)
T ss_dssp             HHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH----------------------------------------------
Confidence            4567788899999999999999987666655443                                              


Q ss_pred             cCCCceEEEEEEecCHHHH----HHHHHHhhhhc---CcccchhhhHhHHHHHHHhHHHh--hccCceEEEEecC
Q 010176          367 SRKPYRIELVGVVCDAYLA----VVRGIRRAIMM---KRAVRVNSQLKSHKRFANAFRNY--CELVDNARLYCTN  432 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~ela----v~R~~~R~~~g---Gr~Vp~~~ql~s~~rf~~~~~~y--~~lvD~~~lydnn  432 (516)
                      +..||.+.++++.+|++++    +.|...|+..+   ||.+|.+.+...++++..++...  ...+|.+.+||+.
T Consensus       133 ~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~  207 (287)
T 1gvn_B          133 QAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE  207 (287)
T ss_dssp             HTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTT
T ss_pred             HhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCC
Confidence            3347788888899999999    88888888764   58999888888999999888654  6789999999965

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.57  E-value=4.6e-14  Score=128.68  Aligned_cols=142  Identities=16%  Similarity=0.103  Sum_probs=99.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHH-hccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~-~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      +|.+|+|.|+|||||||+++.|++ .+       +..+|+.      |.++..+.+........+..+. .......+..
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~------d~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   66 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINR------DDYRQSIMAHEERDEYKYTKKK-EGIVTGMQFD   66 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECH------HHHHHHHTTSCCGGGCCCCHHH-HHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecH------HHHHHHhhCCCccchhhhchhh-hhHHHHHHHH
Confidence            478999999999999999999998 45       4589954      5555555542000000011111 1122334456


Q ss_pred             HHHHHH---hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176          290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF  366 (516)
Q Consensus       290 la~~aL---~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~  366 (516)
                      .+..++   ..|.+||+|+++....+++.+..+++.                                            
T Consensus        67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~--------------------------------------------  102 (181)
T 1ly1_A           67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE--------------------------------------------  102 (181)
T ss_dssp             HHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHH--------------------------------------------
Confidence            788888   899999999999988777766655432                                            


Q ss_pred             cCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHh
Q 010176          367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA  415 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~  415 (516)
                        .|+.+.+|++.||+++++.|...|..   |.++.+.+.++++.|...
T Consensus       103 --~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~  146 (181)
T 1ly1_A          103 --YGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREY  146 (181)
T ss_dssp             --HTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHH
T ss_pred             --cCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhcc
Confidence              24556678999999999999988863   678888888888777664

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.56  E-value=5.6e-14  Score=137.87  Aligned_cols=168  Identities=22%  Similarity=0.329  Sum_probs=107.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ...+|.+|+++|+|||||||+++.|++.++.     +.+++++|.++...+.+..+... +.. ...+.    .......
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~r~~~~~~~~i~~~~g~~-~~~~~----~~~~~~~   97 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFRSQHPHYLELQQEYGKD-SVEYT----KDFAGKM   97 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGGGTTSTTHHHHHTTCSST-THHHH----HHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHHHHhchhHHHHHHHcCch-HHHHh----hHHHHHH
Confidence            4567999999999999999999999998842     56899999997643322223221 111 11111    1112233


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF  366 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~  366 (516)
                      +...+..++..|.+||+|+++.....+..+..++                                              
T Consensus        98 ~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l----------------------------------------------  131 (253)
T 2p5t_B           98 VESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLL----------------------------------------------  131 (253)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHH----------------------------------------------
Confidence            3557777888999999999999877666655443                                              


Q ss_pred             cCCCceEEEEEEecCHHHHHHHHHHhhhh-------cCcccchhhhHhHHHHHHHhHH--HhhccCceEEEEec
Q 010176          367 SRKPYRIELVGVVCDAYLAVVRGIRRAIM-------MKRAVRVNSQLKSHKRFANAFR--NYCELVDNARLYCT  431 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~elav~R~~~R~~~-------gGr~Vp~~~ql~s~~rf~~~~~--~y~~lvD~~~lydn  431 (516)
                      +..|+.|.++++.+|++++..|...|...       .|+.+|.......+..+.-+..  .-...+|.+..|..
T Consensus       132 ~~~g~~v~lv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~t~~~~~~~~~~~I~~~l~  205 (253)
T 2p5t_B          132 KNKGYEVQLALIATKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQR  205 (253)
T ss_dssp             HHTTCEEEEEEECCCHHHHHHHHHHHHHHTTTSCSCC-------CCCTTHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             HHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhHHHHHHHHhhccCCCeEEEEeC
Confidence            23467788899999999999999999753       3455554433333344443332  23466788877763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.48  E-value=8.2e-13  Score=131.40  Aligned_cols=144  Identities=16%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|.+|++.|+|||||||+++.|++.+.      +..+|+.|      .+++.+.+........+.... .......+...
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~------~~~~i~~D------~~r~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~   67 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNP------GFYNINRD------DYRQSIMAHEERDEYKYTKKK-EGIVTGMQFDT   67 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST------TEEEECHH------HHHHHHTTSCCCC---CCHHH-HHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCC------CcEEeccc------HHHHHhccCCcccccccchhh-hhHHHHHHHHH
Confidence            478999999999999999999998641      45899554      445555442110000111111 11112233457


Q ss_pred             HHHHH---hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          291 LVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       291 a~~aL---~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      +..++   ..|.+||+|+++..+.+++.+.+++..                                             
T Consensus        68 ~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~---------------------------------------------  102 (301)
T 1ltq_A           68 AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE---------------------------------------------  102 (301)
T ss_dssp             HHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHH---------------------------------------------
Confidence            77888   899999999999988887776655432                                             


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF  416 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~  416 (516)
                       .|+.+.+|++.+|++++++|...|.   +|.+|.+.+.+++++|....
T Consensus       103 -~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~  147 (301)
T 1ltq_A          103 -YGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL  147 (301)
T ss_dssp             -TTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred             -cCCcEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhccc
Confidence             2456778999999999999999986   48899888888888876543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.44  E-value=2.2e-12  Score=119.19  Aligned_cols=128  Identities=19%  Similarity=0.230  Sum_probs=83.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..+++.|.++      ..+.+. +.. +..+.... ....+..+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-------~~~i~~D~~~------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~   67 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR-------LPLLSKDAFK------EVMFDGLGWS-DREWSRRV-GATAIMMLY   67 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT-------CCEEEHHHHH------HHHHHHHCCC-SHHHHHHH-HHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC-------CeEecHHHHH------HHHHHhcCcc-chHHHHHh-hHHHHHHHH
Confidence            4689999999999999999999999884       4789766654      333221 111 11122122 333455555


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+..+++.|.+||+|+++........+.+++.                                              .
T Consensus        68 ~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~----------------------------------------------~  101 (193)
T 2rhm_A           68 HTAATILQSGQSLIMESNFRVDLDTERMQNLHT----------------------------------------------I  101 (193)
T ss_dssp             HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHH----------------------------------------------H
T ss_pred             HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH----------------------------------------------h
Confidence            677888999999999999832111122211211                                              1


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCc
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR  398 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr  398 (516)
                      .++...+|++++|++++.+|...|...+.|
T Consensus       102 ~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r  131 (193)
T 2rhm_A          102 APFTPIQIRCVASGDVLVERILSRIAQGAR  131 (193)
T ss_dssp             SCCEEEEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred             cCCeEEEEEEeCCHHHHHHHHHHhcCcccc
Confidence            234466789999999999999999765444

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.41  E-value=1.5e-12  Score=137.30  Aligned_cols=123  Identities=23%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..+|.+|+|+|+|||||||+++.|++.++       +.+|+.|.++.                        +..    +.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~~------------------------~~~----~~  299 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG-------YVHVNRDTLGS------------------------WQR----CV  299 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGT-------CEECCGGGSCS------------------------HHH----HH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcC-------cEEEccchHHH------------------------HHH----HH
Confidence            45689999999999999999999999884       58998888731                        111    22


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+..++..|.+||+|+|+.....|..++++++..                                             
T Consensus       300 ~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~---------------------------------------------  334 (416)
T 3zvl_A          300 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDA---------------------------------------------  334 (416)
T ss_dssp             HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHc---------------------------------------------
Confidence            36677888999999999999999888887776442                                             


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCc--ccchhhhHhHHHHH
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR--AVRVNSQLKSHKRF  412 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr--~Vp~~~ql~s~~rf  412 (516)
                       |+.+.+|++.++.+++++|...|...+++  .+|...+.+.+++|
T Consensus       335 -~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~  379 (416)
T 3zvl_A          335 -GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF  379 (416)
T ss_dssp             -TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC
T ss_pred             -CCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc
Confidence             34577889999999999999999886555  45555544444333

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.34  E-value=3.2e-11  Score=110.35  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..++.+|++.|+|||||||+++.|+..+       +.++++.|.+.....+++...+... .+..      .......+.
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~-~~~~------~~~~~~~~~   70 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPL-NDDD------RKPWLQALN   70 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGCCHHHHHHHHTTCCC-CHHH------HHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccccchHHHHHhhcCcCC-Cccc------cccHHHHHH
Confidence            3457899999999999999999999887       4589999998754333332233211 1110      111122234


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+..++..|.++|+|+++..+..++.+                                                  +.
T Consensus        71 ~~~~~~~~~~~~~vi~~~~~~~~~~~~l--------------------------------------------------~~  100 (175)
T 1knq_A           71 DAAFAMQRTNKVSLIVCSALKKHYRDLL--------------------------------------------------RE  100 (175)
T ss_dssp             HHHHHHHHHCSEEEEECCCCSHHHHHHH--------------------------------------------------HT
T ss_pred             HHHHHHHhcCCcEEEEeCchHHHHHHHH--------------------------------------------------Hh
Confidence            4566677789999999988765443321                                                  11


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                      .+..+.+|+++||++++++|...|.
T Consensus       101 ~~~~~~vv~l~~~~e~~~~R~~~R~  125 (175)
T 1knq_A          101 GNPNLSFIYLKGDFDVIESRLKARK  125 (175)
T ss_dssp             TCTTEEEEEEECCHHHHHHHHHTST
T ss_pred             cCCCEEEEEEECCHHHHHHHHHhcc
Confidence            1223567899999999999999884

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.30  E-value=3.5e-10  Score=103.97  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch---------HHHHHHhcCCCCChhhHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELVHQ  281 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD---------~irk~L~~~~~~~~~~y~~e~v~~  281 (516)
                      +|.+|++.|+|||||||+++.|++.++       ..+|+.|++-+.-         ...+.+...+...    ..+.++.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~   70 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG-------YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV----PVEITIS   70 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCC----CHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcC----CHHHHHH
Confidence            588999999999999999999999884       4889777653210         0001111111110    0111122


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE  361 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~  361 (516)
                      .+...+... ...+..|..||+|++......++.+...+.                                        
T Consensus        71 ~l~~~~~~~-~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~----------------------------------------  109 (196)
T 1tev_A           71 LLKREMDQT-MAANAQKNKFLIDGFPRNQDNLQGWNKTMD----------------------------------------  109 (196)
T ss_dssp             HHHHHHHHH-HHHCTTCCEEEEESCCCSHHHHHHHHHHHT----------------------------------------
T ss_pred             HHHHHHHhh-hccccCCCeEEEeCCCCCHHHHHHHHHHhc----------------------------------------
Confidence            222222222 223446889999999887654443322110                                        


Q ss_pred             hhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHH----HhhccCceEEEEecC
Q 010176          362 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFR----NYCELVDNARLYCTN  432 (516)
Q Consensus       362 ~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~----~y~~lvD~~~lydnn  432 (516)
                            ..+..-.+|++++|+++++.|...|....+|.. ..+.+.+++..+.....    .|.... .+.+.||+
T Consensus       110 ------~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~id~~  178 (196)
T 1tev_A          110 ------GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG-KVKKIDAS  178 (196)
T ss_dssp             ------TTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEETT
T ss_pred             ------ccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcC-CEEEEECC
Confidence                  001112358889999999999999987655543 34444444555444433    244333 35567865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.26  E-value=5.4e-11  Score=117.13  Aligned_cols=131  Identities=21%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh---ccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE---SFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~---l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      +|.+|+++|+|||||||+++.|++.   .++     ..++++.|.++.      .+.+.  ...   ....    .....
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~-----~~i~~~~D~~~~------~l~~~--~~~---~e~~----~~~~~   62 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI-----DVIVLGSDLIRE------SFPVW--KEK---YEEF----IKKST   62 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEECTHHHHT------TSSSC--CGG---GHHH----HHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC-----EEEEECchHHHH------HHhhh--hHH---HHHH----HHHHH
Confidence            4789999999999999999999987   332     234466665543      23221  100   0011    11112


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ...+..+++. ..||+|+++..+.++..+..+++.                                             
T Consensus        63 ~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~---------------------------------------------   96 (260)
T 3a4m_A           63 YRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKK---------------------------------------------   96 (260)
T ss_dssp             HHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHH---------------------------------------------
Confidence            2356667777 899999999888877776665533                                             


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF  412 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf  412 (516)
                       .|+...+|+++||++++..|...|.    +.++.+.+.+.+.+|
T Consensus        97 -~~~~~~vi~l~~~~e~~~~R~~~R~----~~~~~~~l~~~~~~~  136 (260)
T 3a4m_A           97 -YNKNYAIIYLKASLDVLIRRNIERG----EKIPNEVIKKMYEKF  136 (260)
T ss_dssp             -TTCEEEEEEEECCHHHHHHHHHHTT----CSSCHHHHHHHHHHC
T ss_pred             -cCCCEEEEEEeCCHHHHHHHHHhCC----CCCCHHHHHHHHHHh
Confidence             2344667899999999999998874    666665555554443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.26  E-value=4.7e-11  Score=112.10  Aligned_cols=117  Identities=18%  Similarity=0.122  Sum_probs=78.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ++|.+|+|.|+|||||||+++.|++.++       ..+|+.|.+.........-.+.. ..+.     . .....    .
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~~~~~~~~~~~~~g~~-~~~~-----~-~~~~~----~   77 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-------YPFIEGDALHPPENIRKMSEGIP-LTDD-----D-RWPWL----A   77 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT-------CCEEEGGGGCCHHHHHHHHHTCC-CCHH-----H-HHHHH----H
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CEEEeCCcCcchhhHHHHhcCCC-CCch-----h-hHHHH----H
Confidence            3477999999999999999999999984       58999999864322211111211 1111     0 11111    2


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK  369 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~  369 (516)
                      .+...+..|.+||+|+++..+..++.+..++                                                 
T Consensus        78 ~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~-------------------------------------------------  108 (202)
T 3t61_A           78 AIGERLASREPVVVSCSALKRSYRDKLRESA-------------------------------------------------  108 (202)
T ss_dssp             HHHHHHTSSSCCEEECCCCSHHHHHHHHHTS-------------------------------------------------
T ss_pred             HHHHHHhcCCCEEEECCCCCHHHHHHHHHhc-------------------------------------------------
Confidence            4445558899999999998876665442110                                                 


Q ss_pred             CceEEEEEEecCHHHHHHHHHHhh
Q 010176          370 PYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       370 gy~I~li~V~~d~elav~R~~~R~  393 (516)
                      +..+.+|+++||++++++|...|.
T Consensus       109 ~~~~~vi~l~~~~e~~~~Rl~~R~  132 (202)
T 3t61_A          109 PGGLAFVFLHGSESVLAERMHHRT  132 (202)
T ss_dssp             TTCCEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCHHHHHHHHHHhh
Confidence            122456899999999999999986

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.25  E-value=5.4e-10  Score=104.55  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=94.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch---------HHHHHHhcCCCCChhhHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAEL  278 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD---------~irk~L~~~~~~~~~~y~~e~  278 (516)
                      .+.+|.+|++.|+|||||||+++.|++.++       ..+|+.|.+-+.-         ...+.+...+.. .+   .+.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-------~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~   79 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYS-------FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI-VP---QEI   79 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSS-------CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCC-CC---HHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCc-CC---HHH
Confidence            456788999999999999999999999884       5899776542210         000111111100 00   011


Q ss_pred             HHHHHHHHHHHHHHHHHhCC-CcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhh
Q 010176          279 VHQSSTDAASSLLVTALNEG-RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDY  357 (516)
Q Consensus       279 v~~~~~~~a~~la~~aL~~G-~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~  357 (516)
                          ....+...+...+..| ..+|+|+.....+....+...                                      
T Consensus        80 ----~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~--------------------------------------  117 (203)
T 1ukz_A           80 ----TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD--------------------------------------  117 (203)
T ss_dssp             ----HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHH--------------------------------------
T ss_pred             ----HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHh--------------------------------------
Confidence                1223334556677777 579999876554332211000                                      


Q ss_pred             hhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHHh---HHHhhccCceEEEEecC
Q 010176          358 QQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFANA---FRNYCELVDNARLYCTN  432 (516)
Q Consensus       358 ~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~~---~~~y~~lvD~~~lydnn  432 (516)
                              ... + . .+|++++|+++++.|+..|....|+. .+.+.+.+++..+.+.   +..+....|.+++.|||
T Consensus       118 --------~~~-~-~-~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~  185 (203)
T 1ukz_A          118 --------IVE-S-K-FILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD  185 (203)
T ss_dssp             --------TCC-C-S-EEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS
T ss_pred             --------cCC-C-C-EEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC
Confidence                    011 1 1 35889999999999999997665664 2344555555554432   22223457888778866

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.25  E-value=7e-11  Score=107.97  Aligned_cols=123  Identities=19%  Similarity=0.210  Sum_probs=76.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-C---CC----C-hhhHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G---HH----D-DMLQTAELVHQ  281 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~---~~----~-~~~y~~e~v~~  281 (516)
                      +|.+|+++|+|||||||+++.|++.++.     +.+.++.|.++      ..+.+. .   ..    . ...+..+. ..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~-----~~~~~~~D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   69 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLI------EAMPLKMQSAEGGIEFDADGGVSIGPE-FR   69 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHH------HHSCGGGGTSTTSEEECTTSCEEECHH-HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEeccchHh------hhcchhhccchhhccccCCCccccchh-HH
Confidence            4789999999999999999999999853     45667555543      222221 0   00    0 00000111 22


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCCCC-hHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhh
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTLSW-VPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK  360 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~-~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~  360 (516)
                      ..+..+...+...++.|.+||+|+++.. +..++.+.+..                                        
T Consensus        70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~----------------------------------------  109 (178)
T 1qhx_A           70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV----------------------------------------  109 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh----------------------------------------
Confidence            3344344466777889999999999863 33333332221                                        


Q ss_pred             hhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176          361 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       361 ~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                              .++.+.++++.||++++.+|...|.
T Consensus       110 --------~~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A          110 --------GDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             --------TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             --------cCCcEEEEEEECCHHHHHHHHHhhC
Confidence                    1123556788999999999998873

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.25  E-value=3.7e-10  Score=103.61  Aligned_cols=159  Identities=16%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH--------HHHHHhcCCCCChhhHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV--------IYRALSSKGHHDDMLQTAELVH  280 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~--------irk~L~~~~~~~~~~y~~e~v~  280 (516)
                      ..+|.+|++.|+|||||||+++.|++.++       ..+++.|++-+..+        ..+.+++.+....    .+.++
T Consensus         3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~   71 (194)
T 1qf9_A            3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP----SIVTV   71 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC----HHHHH
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC----HHHHH
Confidence            34688999999999999999999999884       48897766532110        0011111110000    01111


Q ss_pred             HHHHHHHHHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhh
Q 010176          281 QSSTDAASSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ  358 (516)
Q Consensus       281 ~~~~~~a~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~  358 (516)
                      .        .+...+.  .|..||+|+.......+..+...+..                                    
T Consensus        72 ~--------~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~------------------------------------  107 (194)
T 1qf9_A           72 K--------LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKD------------------------------------  107 (194)
T ss_dssp             H--------HHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTT------------------------------------
T ss_pred             H--------HHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhc------------------------------------
Confidence            1        2222222  67899999877665444333222100                                    


Q ss_pred             hhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHH---hHHHhhccCceEEEEecC
Q 010176          359 QKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFAN---AFRNYCELVDNARLYCTN  432 (516)
Q Consensus       359 ~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~---~~~~y~~lvD~~~lydnn  432 (516)
                               .....+ +|+++||+++++.|+..|....++.- ..+...++.+.+..   .+..+....|.+.+.||+
T Consensus       108 ---------~~~~~~-vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~  175 (194)
T 1qf9_A          108 ---------FVDTKF-VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPAN  175 (194)
T ss_dssp             ---------TCEEEE-EEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECS
T ss_pred             ---------cCCCCE-EEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECC
Confidence                     001122 68889999999999999975444422 23333333333332   222233446887888865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.24  E-value=1.8e-11  Score=112.21  Aligned_cols=121  Identities=12%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      +|.+|++.|+|||||||+++.|++.++.       .++ ++|.+.  +.+++ ++..+. ....+.... .+...    .
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~d~~~~g--~~i~~-~~~~g~-~~~~~~~~~-~~~~~----~   67 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPG-------SFVFEPEEMG--QALRK-LTPGFS-GDPQEHPMW-IPLML----D   67 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTT-------CEECCTHHHH--HHHHH-TSTTCC-SCGGGSTTH-HHHHH----H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCC-------CEEEchhhhH--HHHHH-hCcccc-chhhhhHHH-HHHHH----H
Confidence            5789999999999999999999998853       344 544322  22322 222111 111111111 11122    2


Q ss_pred             HHHHHHhC-CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          290 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       290 la~~aL~~-G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      .+...++. |..||+|+++..+.+++.+...++.                                              
T Consensus        68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~----------------------------------------------  101 (183)
T 2vli_A           68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKD----------------------------------------------  101 (183)
T ss_dssp             HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh----------------------------------------------
Confidence            34445555 8899999999987766555444321                                              


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                      .|+.+.+|+++||++++++|...|.
T Consensus       102 ~~~~~~~i~l~~~~e~~~~R~~~R~  126 (183)
T 2vli_A          102 RGLSVHHFTLIAPLNVVLERLRRDG  126 (183)
T ss_dssp             TTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred             cCCceEEEEEeCCHHHHHHHHHhcc
Confidence            1233455899999999999999885

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.24  E-value=3e-10  Score=123.22  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhH-----HHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ-----TAELVHQSS  283 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y-----~~e~v~~~~  283 (516)
                      ..+|.+|+|+|+|||||||+++.|++.++|.  ..++.+|      +.|.+++.+.+.... ...+     ......+..
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~------s~D~~r~~~~~~~~~-~~~f~~~~~~~~~~re~~  102 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVF------NVGEYRREAVKQYSS-YNFFRPDNEEAMKVRKQC  102 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE------EHHHHHHHHHSCCCC-GGGGCTTCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEe------cccHHHHHhccCCcc-ccccCcccHHHHHHHHHH
Confidence            3578999999999999999999999988652  2245677      445555556553110 0111     111111222


Q ss_pred             HHHHHHHHHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176          284 TDAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE  361 (516)
Q Consensus       284 ~~~a~~la~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~  361 (516)
                      ...+...+...|  ..|.+||+|+|+.....|+.+.+++++                                       
T Consensus       103 ~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~---------------------------------------  143 (520)
T 2axn_A          103 ALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKE---------------------------------------  143 (520)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHH---------------------------------------
Confidence            222233445555  679999999999999999988776643                                       


Q ss_pred             hhccccCCCceEEEEEEecC-HHHHHHHHHHhhhh
Q 010176          362 NRQVFSRKPYRIELVGVVCD-AYLAVVRGIRRAIM  395 (516)
Q Consensus       362 ~~~~~~~~gy~I~li~V~~d-~elav~R~~~R~~~  395 (516)
                             .|+.+.++.+.|+ +++..+|+.+|...
T Consensus       144 -------~g~~v~~l~~~~~d~e~i~~ri~~r~~~  171 (520)
T 2axn_A          144 -------NDFKAFFIESVCDDPTVVASNIMEVKIS  171 (520)
T ss_dssp             -------HTCEEEEEEEECCCHHHHHHHHHHHTTT
T ss_pred             -------cCCeEEEEEEeCChHHHHHHHHHhhhhc
Confidence                   1455667778876 78777888777643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.24  E-value=1.6e-10  Score=108.71  Aligned_cols=121  Identities=15%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..++.+|+|.|+|||||||+++.|+..+       +.++++.|.+......++...+... .+.    .  ....+..+.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~-~~~----~--~~~~~~~~~   91 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPL-TDE----D--RWPWLRSLA   91 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCC-CHH----H--HHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCC-CCc----c--cccHHHHHH
Confidence            3467899999999999999999999888       4589999998754434443333211 111    0  111223344


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ..+...+..|.++|+|+++..+..++.+.    +                                            ..
T Consensus        92 ~~~~~~~~~g~~viid~~~~~~~~~~~l~----~--------------------------------------------~~  123 (200)
T 4eun_A           92 EWMDARADAGVSTIITCSALKRTYRDVLR----E--------------------------------------------GP  123 (200)
T ss_dssp             HHHHHHHHTTCCEEEEECCCCHHHHHHHT----T--------------------------------------------SS
T ss_pred             HHHHHHHhcCCCEEEEchhhhHHHHHHHH----H--------------------------------------------hC
Confidence            56667778899999999988765554321    0                                            00


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhh
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                      .  .+.+|++.||+++.++|...|.
T Consensus       124 ~--~~~vv~l~~~~e~l~~Rl~~R~  146 (200)
T 4eun_A          124 P--SVDFLHLDGPAEVIKGRMSKRE  146 (200)
T ss_dssp             S--CCEEEEEECCHHHHHHHHTTCS
T ss_pred             C--ceEEEEEeCCHHHHHHHHHhcc
Confidence            1  2456899999999999998775

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.22  E-value=2.2e-10  Score=105.92  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=89.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch-----HH---HHHHhcCCCCChhhHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VI---YRALSSKGHHDDMLQTAELVHQ  281 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD-----~i---rk~L~~~~~~~~~~y~~e~v~~  281 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..+++.|.+-+.-     ..   .+.+...+...    ..+.   
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~---   72 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-------YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLV----PLET---   72 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH---
Confidence            4678999999999999999999999884       4789777643220     00   01111111100    0111   


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE  361 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~  361 (516)
                       ....+...+...+..|..||+|+......+++.+...                                          
T Consensus        73 -~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~------------------------------------------  109 (196)
T 2c95_A           73 -VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERR------------------------------------------  109 (196)
T ss_dssp             -HHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHH------------------------------------------
T ss_pred             -HHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHh------------------------------------------
Confidence             2223344556667788999999865544332221110                                          


Q ss_pred             hhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHHH---hhccCceEEEEecC
Q 010176          362 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFRN---YCELVDNARLYCTN  432 (516)
Q Consensus       362 ~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~~---y~~lvD~~~lydnn  432 (516)
                           ...+  -.+|+++||++++.+|...|....+|.- ..+.+.++.+.+......   +....|.+.+.||+
T Consensus       110 -----~~~~--~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~  177 (196)
T 2c95_A          110 -----IGQP--TLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAE  177 (196)
T ss_dssp             -----TCCC--SEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECC
T ss_pred             -----cCCC--CEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence                 0011  1358899999999999999875445532 233333333333322221   12235777777855

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.21  E-value=3e-10  Score=101.79  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-ChhhHHHHHHHHH-HHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQS-STDAASSL  290 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-~~~~y~~e~v~~~-~~~~a~~l  290 (516)
                      .+|++.|+|||||||+++.| +.++       ..+++.|++     +++.+...+.. ...........+. -.......
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g-------~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG-------AKVIVMSDV-----VRKRYSIEAKPGERLMDFAKRLREIYGDGVVARL   68 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT-------CEEEEHHHH-----HHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC-------CcEEEHhHH-----HHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence            47899999999999999999 7774       477855432     23322221100 0111111110111 11223456


Q ss_pred             HHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          291 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       291 a~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      +...+  ..+..||+|+. ..+..++.+....                                              . 
T Consensus        69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~----------------------------------------------~-  100 (179)
T 3lw7_A           69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRLL----------------------------------------------G-  100 (179)
T ss_dssp             HHHHHCSCCCSCEEEECC-CCHHHHHHHHHHH----------------------------------------------C-
T ss_pred             HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHHh----------------------------------------------C-
Confidence            66677  77889999997 6665554432221                                              0 


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH-HHHhHHHhhccCceEEEEecC
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR-FANAFRNYCELVDNARLYCTN  432 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r-f~~~~~~y~~lvD~~~lydnn  432 (516)
                        ....+|++++|++++++|...|..... ....+...+++.+ .......|...+|.  +.||+
T Consensus       101 --~~~~~i~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~ad~--vId~~  160 (179)
T 3lw7_A          101 --DSVYIVAVHSPPKIRYKRMIERLRSDD-SKEISELIRRDREELKLGIGEVIAMADY--IITND  160 (179)
T ss_dssp             --SCEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHHTCSE--EEECC
T ss_pred             --CCcEEEEEECCHHHHHHHHHhccCCCC-cchHHHHHHHHHhhhccChHhHHHhCCE--EEECC
Confidence              124568999999999999998853211 1223333333322 12224556777775  44654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.18  E-value=5.7e-10  Score=102.63  Aligned_cols=155  Identities=19%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch-----HH---HHHHhcCCCCChhhHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VI---YRALSSKGHHDDMLQTAELVHQS  282 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD-----~i---rk~L~~~~~~~~~~y~~e~v~~~  282 (516)
                      ++.+|++.|+|||||||+++.|++.++       ..++++|++-+..     +.   .+.++..+...    ..+.    
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~----   67 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG-------FKKLSTGDILRDHVARGTPLGERVRPIMERGDLV----PDDL----   67 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT-------CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH----
Confidence            577899999999999999999999884       4889766442210     00   01111111000    0001    


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhh
Q 010176          283 STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKEN  362 (516)
Q Consensus       283 ~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~  362 (516)
                          ....+...+..|  +|+|++......+..+..++..                                        
T Consensus        68 ----~~~~~~~~l~~~--~i~dg~~~~~~~~~~l~~~l~~----------------------------------------  101 (186)
T 3cm0_A           68 ----ILELIREELAER--VIFDGFPRTLAQAEALDRLLSE----------------------------------------  101 (186)
T ss_dssp             ----HHHHHHHHCCSE--EEEESCCCSHHHHHHHHHHHHH----------------------------------------
T ss_pred             ----HHHHHHHHhcCC--EEEeCCCCCHHHHHHHHHHHHh----------------------------------------
Confidence                112344445554  9999887765444332222111                                        


Q ss_pred             hccccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHH---hHHHhhccCceEEEEecC
Q 010176          363 RQVFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFAN---AFRNYCELVDNARLYCTN  432 (516)
Q Consensus       363 ~~~~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~---~~~~y~~lvD~~~lydnn  432 (516)
                            .|+.. .+++++||++++++|+..|....||. .+.+...++...+..   ++..+....+.+.+.||+
T Consensus       102 ------~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~  170 (186)
T 3cm0_A          102 ------TGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGL  170 (186)
T ss_dssp             ------TTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             ------cCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence                  12222 45888999999999999997544443 333333333333322   222222335667778854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.17  E-value=2.3e-10  Score=106.01  Aligned_cols=88  Identities=18%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH--------HHHHHhcCCCCChhhHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV--------IYRALSSKGHHDDMLQTAELVHQ  281 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~--------irk~L~~~~~~~~~~y~~e~v~~  281 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..+++.|++-+...        ..+.++..+....    .+.++ 
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~-   77 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTGELLREELASESERSKLIRDIMERGDLVP----SGIVL-   77 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC----HHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC----HHHHH-
Confidence            4578999999999999999999999984       48998776532211        0011111111100    11112 


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCCCChHH
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPF  312 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~  312 (516)
                         ..+...+...+..|..||+|+.......
T Consensus        78 ---~~~~~~i~~~~~~~~~vi~dg~~~~~~~  105 (199)
T 2bwj_A           78 ---ELLKEAMVASLGDTRGFLIDGYPREVKQ  105 (199)
T ss_dssp             ---HHHHHHHHHHTTSCSCEEEETCCSSHHH
T ss_pred             ---HHHHHHHhcccccCccEEEeCCCCCHHH
Confidence               2223345555667899999988776543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.05  E-value=2.4e-09  Score=100.22  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...+|.+|++.|+|||||||+++.|++.++       ..+|+.|++
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~~d~~   54 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-------IPQISTGEL   54 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhHH
Confidence            356788999999999999999999999884       368876554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.98  E-value=6.4e-09  Score=96.18  Aligned_cols=124  Identities=11%  Similarity=0.022  Sum_probs=77.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ...++.+|++.|+|||||||+++.|+..+...  +....+++.|.++      ..+.+. .....    .. ....+..+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~--~~~~~~~~~d~~~------~~~~~~-~~~~~----~~-r~~~~~~~   74 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE--GYRVEVLDGDWAR------TTVSEG-AGFTR----EE-RLRHLKRI   74 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------TTTTTT-CCCCH----HH-HHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEeeHHHHH------HHHhhc-cCCCh----hh-HHHHHHHH
Confidence            34568999999999999999999999887421  1235678666553      334331 00011    11 11122223


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ...+...+..|..||+|+++.....++.+..++..                                             
T Consensus        75 ~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~---------------------------------------------  109 (186)
T 2yvu_A           75 AWIARLLARNGVIVICSFVSPYKQARNMVRRIVEE---------------------------------------------  109 (186)
T ss_dssp             HHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhc---------------------------------------------
Confidence            33455557889999999988776666555443321                                             


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIR  391 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~  391 (516)
                       .|....+|+++||++++..|...
T Consensus       110 -~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A          110 -EGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             -TTCCEEEEEEECCHHHHHHHCHH
T ss_pred             -cCCCeEEEEEeCCHHHHHHhhhh
Confidence             12234568999999999998644

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.96  E-value=2.4e-08  Score=94.13  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|+|.|+|||||||+++.|++.++       ..++++|++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~   34 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE-------IPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CcEeeHHHH
Confidence            478899999999999999999884       478866544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.95  E-value=2.2e-08  Score=90.16  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+|++.|+|||||||+++.|++.++       ..+++.|.+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~~   36 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK-------YPIIKGSSFE   36 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC-------CCEEECCCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-------CeeecCcccc
Confidence            3789999999999999999999984       4789888764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.94  E-value=3.4e-08  Score=90.66  Aligned_cols=87  Identities=20%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc---hHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s---D~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      +|++.|+|||||||+++.|++.+..    .+..++++|+....   +.++ .+...+.. .+....-......+..+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~----~g~~~i~~d~~~~~~~~~~i~-~~~~~g~~-~~~~~~~~~~~~~~~~l~~~   75 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ----KGYFVSLYREPGGTKVGEVLR-EILLTEEL-DERTELLLFEASRSKLIEEK   75 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEESSCSSHHHHHHH-HHHHHSCC-CHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCCCCCchHHHHH-HHHcCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999997721    13467877764322   1222 22221111 11100001011222334456


Q ss_pred             HHHHHhCCCcEEEeCC
Q 010176          291 LVTALNEGRDVIMDGT  306 (516)
Q Consensus       291 a~~aL~~G~sVIvDaT  306 (516)
                      +..++.+|..||+|..
T Consensus        76 i~~~l~~~~~vi~dr~   91 (195)
T 2pbr_A           76 IIPDLKRDKVVILDRF   91 (195)
T ss_dssp             HHHHHHTTCEEEEESC
T ss_pred             HHHHHhCCCEEEECcc
Confidence            6778899999999954

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.92  E-value=2.2e-08  Score=94.52  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=27.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|+|.|+|||||||+++.|++.++       ..+|++|++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~   34 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG-------IPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS-------CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence            478899999999999999999884       478977554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.92  E-value=2.5e-08  Score=91.92  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=104.1

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      -+++.++.+.|+|||||||+++.+..         +..++      +.|.++..+++..  .... .    ....++.+.
T Consensus         6 i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~------~~d~~~g~~~~~~--~~~~-~----~~~~~~~~~   63 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVI------SSDFCRGLMSDDE--NDQT-V----TGAAFDVLH   63 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHHHHHHSC---------GGGEE------EHHHHHHHHCSST--TCGG-G----HHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEE------ccHHHHHHhcCcc--cchh-h----HHHHHHHHH
Confidence            35688999999999999999998642         33567      5555555555431  1111 1    112233334


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      ......+..|..+++|.++.....+.+.+.+|+...                                            
T Consensus        64 ~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~--------------------------------------------   99 (171)
T 4gp7_A           64 YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH--------------------------------------------   99 (171)
T ss_dssp             HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred             HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence            466777889999999999999888888888887641                                            


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN  432 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn  432 (516)
                        ....++.++.|..-.-.|...|.   .+.||.+.+.++...+.+.+...... ....++-+.
T Consensus       100 --~~p~~lllDEPt~~Ld~~~~~R~---~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH  157 (171)
T 4gp7_A          100 --CFPVAVVFNLPEKVCQERNKNRT---DRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN  157 (171)
T ss_dssp             --CEEEEEEECCCHHHHHHHHHTCS---SCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred             --CcEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence              23567788888877777777776   46999988888888887776555433 344454443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.90  E-value=2e-08  Score=95.42  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..+|+.|++
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~   38 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFH-------AAHLATGDM   38 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEehhHH
Confidence            3467899999999999999999999984       488976544

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.87  E-value=8.1e-09  Score=97.04  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceE--EEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV--VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av--~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ..++.+|++.|+|||||||+++.|+..+..    .+.+  ++|.|.++..      +... .    .+..+. ....+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~~------~~~~-~----~~~~~~-~~~~~~~   85 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNVRHG------LNRD-L----SFKAED-RAENIRR   85 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTTT------TTTT-C----CSSHHH-HHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchhhhH------hhcc-c----CcChHH-HHHHHHH
Confidence            356899999999999999999999988742    1334  8977766532      2221 0    011111 1222233


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHH
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQT  316 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~  316 (516)
                      ....+......|.++|+..+...+..|+.+
T Consensus        86 ~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~  115 (200)
T 3uie_A           86 VGEVAKLFADAGIICIASLISPYRTDRDAC  115 (200)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred             HHHHHHHHHhCCceEEEecCCchHHHHHHH
Confidence            344666677889999998888877776654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.87  E-value=7.5e-08  Score=88.41  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +..|++.|+|||||||+++.|++.++       ..++|.|.+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~-------~~~i~~d~~   39 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK-------RILYDSDKE   39 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHH
Confidence            56788999999999999999999984       488966655

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.86  E-value=7.5e-08  Score=93.79  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...+|.+|++.|+|||||||+++.|++.+       +..+|++|++
T Consensus        25 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~~-------g~~~is~~~~   63 (243)
T 3tlx_A           25 LSKPDGRYIFLGAPGSGKGTQSLNLKKSH-------CYCHLSTGDL   63 (243)
T ss_dssp             HTSCCEEEEEECCTTSSHHHHHHHHHHHH-------CCEEEEHHHH
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHh-------CCeEEecHHH
Confidence            34578999999999999999999999988       4588966543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.86  E-value=1.4e-08  Score=96.21  Aligned_cols=98  Identities=9%  Similarity=0.056  Sum_probs=58.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..++.+|++.|+|||||||+++.|++.++.. .+...++++.|.++.      .+... .    .+.... ....+..+.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~~r~------~l~~~-~----~~~~~~-r~~~~~~~~   88 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIRF------GLNKD-L----GFSEAD-RNENIRRIA   88 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHTT------TTTTT-C----CSSHHH-HHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccc-cCCcEEEECChHHhh------hhccc-c----CCCHHH-HHHHHHHHH
Confidence            4568899999999999999999999877410 011268886655542      23221 0    011111 122233334


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      ..+..+++.|..||+|.+......++.+..+
T Consensus        89 ~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l  119 (211)
T 1m7g_A           89 EVAKLFADSNSIAITSFISPYRKDRDTARQL  119 (211)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEecCCccHHHHHHHHHH
Confidence            4567788999999999443223444444433

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.85  E-value=3.4e-08  Score=105.30  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=63.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC----ChhhHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSST  284 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~----~~~~y~~e~v~~~~~  284 (516)
                      ..+|.+|+|.|+|||||||+++.|++.+++.  ..+...+      ..|.+++.+.+....    ...........+...
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~------~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~  107 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREF------NVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCA  107 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE------EHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEE------ecchhhhhhccCCCcccccCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999987651  1234555      344455555432000    000011111122221


Q ss_pred             HHHHHHHHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHh
Q 010176          285 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (516)
Q Consensus       285 ~~a~~la~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~  322 (516)
                      ..+...+...+  ..|..||+|+|+...+.|+.+.+.+++
T Consensus       108 ~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~  147 (469)
T 1bif_A          108 LAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence            22222345556  568899999999999998888766543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.84  E-value=3e-08  Score=98.92  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.+|.+|+|+|+|||||||+++.|+ .+       +..+|++|.+
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~l-------g~~~id~D~~  108 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NL-------GAYIIDSDHL  108 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HH-------TCEEEEHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HC-------CCcEEehhHH
Confidence            4568999999999999999999999 56       4588988876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.83  E-value=8.3e-08  Score=91.95  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|++.|+|||||||+++.|++.++       ..+|++|++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg-------~~~i~~dd~   34 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS-------LAHIESGGI   34 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CeEEchHHH
Confidence            689999999999999999999884       488866554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=2e-07  Score=87.36  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .++.+|++.|+|||||||+++.|++.++       ..+++.|.+
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-------~~~i~~d~~   59 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-------VPFIDLDWY   59 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcchHH
Confidence            4466899999999999999999999984       478966654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.81  E-value=1.1e-07  Score=92.28  Aligned_cols=160  Identities=11%  Similarity=0.115  Sum_probs=82.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHH------HH-
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAEL------VH-  280 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~------v~-  280 (516)
                      ..++|++|++.|||||||||.++.|++.++       ..+|++.     |.+|..+...  ++-.....+.      +. 
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-------~~hIstG-----dllR~~i~~~--t~lg~~~~~~~~~G~lVpd   90 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-------FNHLSSG-----DLLRAEVQSG--SPKGKELKAMMERGELVPL   90 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHC-------CEEECHH-----HHHHHHHTTC--CHHHHHHHHHHHHTCCCCH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEcHH-----HHHHHHHHcC--CchHHHHHHHHhcCCCCCH
Confidence            446789999999999999999999999994       4889442     3344444331  1000000000      00 


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhh
Q 010176          281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK  360 (516)
Q Consensus       281 ~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~  360 (516)
                      +.+...+...+.........+|+|+-=.+..+.+.   +...                                      
T Consensus        91 e~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~---l~~~--------------------------------------  129 (217)
T 3umf_A           91 EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIK---FEKE--------------------------------------  129 (217)
T ss_dssp             HHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHH---HHHH--------------------------------------
T ss_pred             HHHHHHHHHHHhhccccccCcccccCCCcHHHHHH---HHHh--------------------------------------
Confidence            01112222233333344556888875444322221   1100                                      


Q ss_pred             hhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHH---hHHHhhccCceEEEEe
Q 010176          361 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFAN---AFRNYCELVDNARLYC  430 (516)
Q Consensus       361 ~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~---~~~~y~~lvD~~~lyd  430 (516)
                            ...+  -.++++.||.++.+.|...|....+|.-. ++.+.++++.|.+   ++..|-.--..+...|
T Consensus       130 ------~~~~--~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Id  195 (217)
T 3umf_A          130 ------VCPC--LCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITID  195 (217)
T ss_dssp             ------TCCC--SEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEE
T ss_pred             ------CCcc--CEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence                  0111  12478899999999999999887777544 5555555544443   3333333334444555

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.81  E-value=2.9e-09  Score=100.39  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +-..++.+|++.|+|||||||+++.|++.+
T Consensus         7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             --CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            345678899999999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.80  E-value=8.6e-08  Score=88.61  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la  291 (516)
                      +.++++.|+|||||||+++.|+....      +.++++.|.+.+.      .. .+.......  .......++.+...+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~------g~~~i~~d~~~~~------~~-~~~~~~~~~--~~~~~~~~~~l~~~~   66 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD------NSAYIEGDIINHM------VV-GGYRPPWES--DELLALTWKNITDLT   66 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS------SEEEEEHHHHHTT------CC-TTCCCGGGC--HHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC------CeEEEcccchhhh------hc-cccccCccc--hhHHHHHHHHHHHHH
Confidence            46889999999999999999987552      4588977766432      11 111111110  000112233333455


Q ss_pred             HHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCc
Q 010176          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY  371 (516)
Q Consensus       292 ~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy  371 (516)
                      ...+..|.++|+|+++ .+..++.+.++++.                                            +..+.
T Consensus        67 ~~~~~~~~~~ild~~~-~~~~~~~~~~~~~s--------------------------------------------~g~~~  101 (189)
T 2bdt_A           67 VNFLLAQNDVVLDYIA-FPDEAEALAQTVQA--------------------------------------------KVDDV  101 (189)
T ss_dssp             HHHHHTTCEEEEESCC-CHHHHHHHHHHHHH--------------------------------------------HCSSE
T ss_pred             HHHHhcCCcEEEeecc-CHHHHHHHHHHHHh--------------------------------------------cccCC
Confidence            5666788999999965 34333333222110                                            11233


Q ss_pred             eEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHh
Q 010176          372 RIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLK  407 (516)
Q Consensus       372 ~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~  407 (516)
                      ++.++++.+|++..+.|...|...  ..++...+..
T Consensus       102 ~~~~i~L~~~~e~l~~R~~~r~~d--~~ld~~~~~~  135 (189)
T 2bdt_A          102 EIRFIILWTNREELLRRDALRKKD--EQMGERCLEL  135 (189)
T ss_dssp             EEEEEEEECCHHHHHHHTTTSCC------CGGGGHH
T ss_pred             CeEEEEEeCCHHHHHHHHHhcccc--ccCCHHHHHH
Confidence            566788899999999999888543  2344443333

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.79  E-value=1.7e-07  Score=84.84  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+|++.|+|||||||+++.|++.++       ..+++.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~d~~   36 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG-------YEFVDTDIF   36 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-------CcEEcccHH
Confidence            4689999999999999999999984       488966655

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.78  E-value=2.6e-08  Score=97.82  Aligned_cols=128  Identities=18%  Similarity=0.217  Sum_probs=77.7

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH------------hcCCC----CChh---h
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL------------SSKGH----HDDM---L  273 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L------------~~~~~----~~~~---~  273 (516)
                      .+|+|+|+|||||||+++.|++.+       +..+|+.|.+...    +.+            .+..+    ..++   .
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~-------~~~~i~~D~~~~~----~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~   70 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET-------GWPVVALDRVQCC----PQIATGSGRPLESELQSTRRIYLDSRPLTEGI   70 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH-------CCCEEECCSGGGC----GGGTTTTTCCCGGGGTTCCEECSCCCCGGGCS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC-------CCeEEeccHHhcc----CCCccccCCCCHHHHhCCCeEEEeeecccccc
Confidence            478999999999999999999988       4588999986421    111            00000    0000   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcccc
Q 010176          274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG  353 (516)
Q Consensus       274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a  353 (516)
                      ++...    ..+.+...+ +++..|.+||+++.+.  .+   +.+++..                      .+|      
T Consensus        71 ~~~~~----f~~~~~~~i-~~~~~g~~vIl~gg~~--~~---~~~~~~~----------------------~~~------  112 (253)
T 2ze6_A           71 LDAES----AHRRLIFEV-DWRKSEEGLILEGGSI--SL---LNCMAKS----------------------PFW------  112 (253)
T ss_dssp             CCHHH----HHHHHHHHH-HTTTTSSEEEEEECCH--HH---HHHHHHC----------------------TTT------
T ss_pred             ccHHH----HHHHHHHHH-HHHhCCCCeEEeccHH--HH---HHHHHhc----------------------ccc------
Confidence            22222    112223344 6678899999986553  11   1111111                      011      


Q ss_pred             chhhhhhhhhccccCCCceEEEEEEecCH-HHHHHHHHHhhhh--cCcccchh
Q 010176          354 EEDYQQKENRQVFSRKPYRIELVGVVCDA-YLAVVRGIRRAIM--MKRAVRVN  403 (516)
Q Consensus       354 ~~~~~~~~~~~~~~~~gy~I~li~V~~d~-elav~R~~~R~~~--gGr~Vp~~  403 (516)
                                    ..++.+.++++.+|. ++...|...|...  .+.+++..
T Consensus       113 --------------~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~  151 (253)
T 2ze6_A          113 --------------RSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPS  151 (253)
T ss_dssp             --------------TSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCC
T ss_pred             --------------cccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccch
Confidence                          135677889999986 9999999999865  56666633

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.74  E-value=1.3e-07  Score=90.37  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+|.+|++.|+|||||||+++.|++.++       ..+|+.|++
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~   41 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-------LKHLSSGDL   41 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS-------SEEEEHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEEechHH
Confidence            4578899999999999999999999884       488977654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.74  E-value=3e-07  Score=85.44  Aligned_cols=28  Identities=25%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      +|.+|++.|+|||||||+++.|++.++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999998854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.72  E-value=3.2e-07  Score=87.27  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +..|++.|+|||||||+++.|++.++       ..+|+.|++
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l   39 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG-------LAHLSTGDM   39 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC-------ceEEehhHH
Confidence            45788999999999999999999984       488966544

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.72  E-value=1.6e-07  Score=84.79  Aligned_cols=34  Identities=24%  Similarity=0.107  Sum_probs=28.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|++.|+|||||||+++.|++.++       ..+++.|++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~~   35 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN-------IPFYDVDEEV   35 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-------CCEEECcHHH
Confidence            588999999999999999999884       4789766653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.69  E-value=2.5e-07  Score=84.91  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+|+|.|+|||||||+++.|++.++       ..+|+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG-------VGLLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-------CCEEeCchH
Confidence            4588999999999999999999984       478966655

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.67  E-value=1.3e-07  Score=104.68  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc---cccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l---~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      .+|.+|++.|+|||||||+++.|++.+   ++     .++.+|.|.++.      .+... ..    +..+. ....++.
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-----~~v~lDgD~iR~------~L~~~-~~----fs~~d-ree~~r~  112 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIRQ------GLNKN-LG----FSPED-REENVRR  112 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEESHHHHTT------TTTTT-CC----SSHHH-HHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEechHHhhh------ccCcc-cc----CChhh-hHHHHHH
Confidence            478999999999999999999999987   43     456776555543      23321 00    11111 2222333


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF  366 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~  366 (516)
                      +...+...+..|..||.+.+...+..++.+.++++                                             
T Consensus       113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~---------------------------------------------  147 (630)
T 1x6v_B          113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHE---------------------------------------------  147 (630)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHH---------------------------------------------
Confidence            34466777889999998854433444554444332                                             


Q ss_pred             cCCCceEEEEEEecCHHHHHHHHHH
Q 010176          367 SRKPYRIELVGVVCDAYLAVVRGIR  391 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~elav~R~~~  391 (516)
                       ..+..+.+|+++||++++.+|..+
T Consensus       148 -~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          148 -GASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             -TTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             -hCCCCeEEEEEECCHHHHHHHhcc
Confidence             123346679999999999999764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.67  E-value=2e-07  Score=87.38  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=29.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.+|.+.|+|||||||+++.|++ +       |..++|+|.+.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-l-------g~~~id~d~~~   36 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-L-------GVPLVDADVVA   36 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-T-------TCCEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-C-------CCcccchHHHH
Confidence            46789999999999999999986 6       45889888763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.66  E-value=5.1e-07  Score=82.51  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCC-CChh---hHHHHHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-HDDM---LQTAELVHQSSTDAAS  288 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~-~~~~---~y~~e~v~~~~~~~a~  288 (516)
                      .+|++.|+|||||||+++.|++.++.  .+....+++.|++     +++.+..... .+..   ....+. .......+.
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~--~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   73 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDN--QGINNKIINYGDF-----MLATALKLGYAKDRDEMRKLSVEK-QKKLQIDAA   73 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT--TTCCEEEEEHHHH-----HHHHHHTTTSCSSHHHHTTSCHHH-HHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEEECChH-----HHHHHHhcccccchhhhhcCCHHH-HHHHHHHHH
Confidence            47899999999999999999998841  0112577754332     2222211100 0000   011111 122222233


Q ss_pred             HHHHHHH--hCCCcEEEeCC
Q 010176          289 SLLVTAL--NEGRDVIMDGT  306 (516)
Q Consensus       289 ~la~~aL--~~G~sVIvDaT  306 (516)
                      ..+..++  ..|..||+|+.
T Consensus        74 ~~i~~~l~~~~~~~vi~d~~   93 (194)
T 1nks_A           74 KGIAEEARAGGEGYLFIDTH   93 (194)
T ss_dssp             HHHHHHHHHTCSSEEEEEEC
T ss_pred             HHHHHHhhccCCCEEEECCc
Confidence            4466677  78999999987

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.66  E-value=2.9e-07  Score=87.47  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|.+|++.|+|||||||+++.|++.++       ..+++.|++
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~   39 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ-------LAHISAGDL   39 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC-------CEECCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence            567899999999999999999999984       488876654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.65  E-value=6.9e-08  Score=90.28  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=26.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ..+|.+|++.|+|||||||+++.|++.++.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.65  E-value=1.5e-07  Score=87.90  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=25.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..+|.+|++.|+|||||||+++.|++.++
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.63  E-value=1.8e-06  Score=82.93  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...|..|++.|+|||||||+++.|++.++       ..+|+.|++
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l   50 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFC-------VCHLATGDM   50 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence            34567899999999999999999999984       488976543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.62  E-value=1.1e-06  Score=86.05  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+|.+|.|.|||||||||+++.|++.++       ..+++.|.+.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-------~~~~d~g~~~   44 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALG-------ARYLDTGAMY   44 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCCcHH
Confidence            4588999999999999999999999984       4889665553

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.62  E-value=3.1e-07  Score=100.77  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..+|.+|++.|+|||||||+++.|++.++..| ...++++|.|.      +++.+.+... ..    .+. ....++.+.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~------ir~~l~~~~~-f~----~~e-r~~~i~ri~  459 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDT------VRHELSSELG-FT----RED-RHTNIQRIA  459 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHH------HHHHTCTTCC-CS----HHH-HHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHH------HHHHhccccC-CC----hhH-HHHHHHHHH
Confidence            34678999999999999999999999875210 01357885544      5555544210 01    111 122233344


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM  319 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l  319 (516)
                      ..+...+++|..||.+.+...+..|+.+.++
T Consensus       460 ~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l  490 (573)
T 1m8p_A          460 FVATELTRAGAAVIAAPIAPYEESRKFARDA  490 (573)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEEcCCCcHHHHHHHHHH
Confidence            5777788899999999666566666554443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.62  E-value=2.3e-07  Score=85.14  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .++.+|++.|+|||||||+++.|++.+..  .+...+.+|.|.+++
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~~~   46 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNIRQ   46 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHHHH
Confidence            35788999999999999999999987621  001356676666543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.61  E-value=6.5e-07  Score=86.70  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..++.+|++.|+|||||||+++.|++.+.
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999999999884

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.58  E-value=4.1e-07  Score=83.15  Aligned_cols=39  Identities=18%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |.+|++.|+|||||||+++.|++.++.  .+.+..+++.|+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~--~g~~~~~i~~~~   41 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRK--EGVNYKMVSFGS   41 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT--TTCCCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh--cCcceEEEehHH
Confidence            678999999999999999999998841  000157886543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.56  E-value=3.1e-07  Score=84.16  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..++.+|++.|+|||||||+++.|++.++       ..+++.|.+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~-------~~~~~~d~~   45 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSG-------LKYINVGDL   45 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhC-------CeEEEHHHH
Confidence            34577889999999999999999999984       488866654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.54  E-value=1.6e-06  Score=82.03  Aligned_cols=35  Identities=31%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|.+|+|.|++||||||+++.|++ +       +..++|+|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-l-------g~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-L-------GINVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEccHH
Confidence            578999999999999999999987 6       4589988876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.54  E-value=1.6e-06  Score=84.46  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccC---CCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG---AATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~---~~~~av~IdaD~ir~  255 (516)
                      ...+|.+|.|.|+|||||||+++.|++.+++..   .+..+.+|+.|+|-+
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            345788999999999999999999999885410   011345899999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.54  E-value=1.1e-06  Score=80.83  Aligned_cols=41  Identities=24%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..++.++++.|+|||||||+++.|+....     .+.++++.|++.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~   46 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLW   46 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchh
Confidence            45678999999999999999999998753     266899777653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.50  E-value=1.9e-06  Score=78.01  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ++.+|++.|+|||||||+++.|+..++       .+++|+|.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-------~~~id~d~~   38 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE   38 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC-------CCEEeccHH
Confidence            456799999999999999999999884       488976654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.50  E-value=1.2e-06  Score=82.09  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ...++.+|.|.|+|||||||+++.|+..+.      +..+++.|.+-.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------~~~~i~~D~~~~   58 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQDDFFK   58 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST------TEEEEEGGGGBC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC------CcEEEeCCcccc
Confidence            345678999999999999999999998761      458899988743

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.50  E-value=1.4e-05  Score=76.96  Aligned_cols=89  Identities=19%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCC----CCChh-----hHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG----HHDDM-----LQTAELVH  280 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~----~~~~~-----~y~~e~v~  280 (516)
                      ++.+|++.|++||||||.++.|.+.+...+. ...++. +|..-.-...+++-+.+..    ..-++     ++.+..  
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R--   78 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI-RDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR--   78 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-CcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH--
Confidence            3679999999999999999999988743110 012222 1211000112344443211    11011     222222  


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176          281 QSSTDAASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       281 ~~~~~~a~~la~~aL~~G~sVIvDa  305 (516)
                         ...+...+..+|++|..||.|=
T Consensus        79 ---~~~~~~~i~paL~~g~~VI~DR  100 (213)
T 4tmk_A           79 ---VQLVETVIKPALANGTWVIGDR  100 (213)
T ss_dssp             ---HHHHHHTHHHHHHTTCEEEEEC
T ss_pred             ---HHHHHHHHHHHHHCCCEEEEcC
Confidence               1223456888999999999994

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.49  E-value=5e-07  Score=98.58  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=60.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ..|.+|++.|+|||||||+++.|++.++..  +..+.+++.|      .+++.+.+.....+    .+  ....++.+..
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~--G~~~~~ld~D------~ir~~l~~~~~f~~----~e--r~~~l~~i~~  435 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQAR--GRKVTLLDGD------VVRTHLSRGLGFSK----ED--RITNILRVGF  435 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECHH------HHHHHTCTTCCSSH----HH--HHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhc--CCeEEEECch------HhhhhhcccccccH----HH--HHHHHHHHHH
Confidence            457899999999999999999999887431  1245788554      44555544210011    11  1112233344


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHH
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQ  315 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~  315 (516)
                      .+...++.|..||+|+++..+..|+.
T Consensus       436 ~~~~~l~~G~~VI~d~~~~~~~~r~~  461 (546)
T 2gks_A          436 VASEIVKHNGVVICALVSPYRSARNQ  461 (546)
T ss_dssp             HHHHHHHTTCEEEEECCCCCHHHHHH
T ss_pred             HHHHHHhCCCEEEEEcCCCCHHHHHH
Confidence            67778889999999998877655543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.48  E-value=5.3e-07  Score=85.44  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...+|.++|++||||||+++.|++.+       |+.+||+|.+.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l-------g~~vid~D~~~   47 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY-------GAHVVNVDRIG   47 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc-------CCEEEECcHHH
Confidence            45789999999999999999999987       45899988874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.46  E-value=7.4e-06  Score=80.23  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCc-eEEE-eCcccccchHHHHHHhc-CCCCChhhHHHH-HHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVV-EADAFKETDVIYRALSS-KGHHDDMLQTAE-LVHQSSTD  285 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~-av~I-daD~ir~sD~irk~L~~-~~~~~~~~y~~e-~v~~~~~~  285 (516)
                      .++.+|++.|++||||||+++.|.+.+...  +.. .+.+ +|..-.-...+++-+.+ .....-..++.. .....-+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            468899999999999999999999887431  112 2222 22110001223443432 110000011111 11111122


Q ss_pred             HHHHHHHHHHhCCCcEEEeC
Q 010176          286 AASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       286 ~a~~la~~aL~~G~sVIvDa  305 (516)
                      .+...+..+|++|..||.|=
T Consensus       103 ~~~~~I~paL~~g~~VI~DR  122 (236)
T 3lv8_A          103 LVENVIKPALARGEWVVGDR  122 (236)
T ss_dssp             HHHHTHHHHHHTTCEEEEES
T ss_pred             HHHHHHHHHHHcCCEEEEee
Confidence            33457888999999999993

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.45  E-value=1.4e-05  Score=76.78  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc---hHHHHHHhcCCCCChhhHHHHHHHH-HHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQ-SSTD  285 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s---D~irk~L~~~~~~~~~~y~~e~v~~-~~~~  285 (516)
                      .++.+|++.|++||||||+++.|.+.+...  +..++..  .+-..+   ..+++-+.......-..++....+- .-+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~--~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~   79 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLT--REPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQ   79 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEE--ESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccc--cCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999887421  1122222  111111   1234434332110000111111011 1112


Q ss_pred             HHHHHHHHHHhCCCcEEEeC
Q 010176          286 AASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       286 ~a~~la~~aL~~G~sVIvDa  305 (516)
                      .+...+..+|++|..||.|-
T Consensus        80 ~~~~~i~p~l~~g~~Vi~DR   99 (213)
T 4edh_A           80 HLAGVIRPALARGAVVLCDR   99 (213)
T ss_dssp             HHHHTHHHHHHTTCEEEEES
T ss_pred             HHHHHHHHHHHCCCEEEECc
Confidence            23456788999999999994

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.44  E-value=2.7e-07  Score=85.50  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh-ccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~-l~~~~~~~~av~IdaD~ir  254 (516)
                      ...++..|++.|+|||||||+++.|++. +       +..++|+|.+-
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-------g~~~id~d~~~   46 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAELD-------GFQHLEVGKLV   46 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHHST-------TEEEEEHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhcC-------CCEEeeHHHHH
Confidence            4556788999999999999999999998 5       45899887653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.43  E-value=1.7e-06  Score=81.75  Aligned_cols=32  Identities=22%  Similarity=0.167  Sum_probs=26.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .|++.|+|||||||+++.|++.++       ..+|+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g-------~~~i~~d~   33 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG-------IPQISTGD   33 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC-------CCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHH
Confidence            378899999999999999999884       47886644

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.41  E-value=1.1e-05  Score=74.32  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +|++.|+|||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            688999999999999999999884

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.41  E-value=1.7e-06  Score=80.10  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+|.+|.|.|++||||||+++.|++. ++       .++|.|.+.
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~-------~~id~d~~~   42 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GY-------PVLDLDALA   42 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TC-------CEEEHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CC-------EEEcccHHH
Confidence            456899999999999999999999986 54       789888764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.38  E-value=1.2e-05  Score=76.98  Aligned_cols=121  Identities=22%  Similarity=0.224  Sum_probs=70.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHH--H-HHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ--S-STDAASSL  290 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~--~-~~~~a~~l  290 (516)
                      +|++.|||||||||.++.|++.++       .++|++.     |.+|..+...  +.-..........  . --+....+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istG-----dllR~~i~~~--t~lg~~~~~~~~~G~lvpd~iv~~l   67 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTG-----DILREAVQKG--TPLGKKAKEYMERGELVPDDLIIAL   67 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHH-----HHHHHHHHHT--CHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHH-----HHHHHHHHhc--ChhhhhHHHHHhcCCcCCHHHHHHH
Confidence            578889999999999999999994       5889542     3334444331  0000000000000  0 00122346


Q ss_pred             HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176          291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP  370 (516)
Q Consensus       291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g  370 (516)
                      +...+.....+|+|+-=.+..+.+.+..+...                                              .+
T Consensus        68 v~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~----------------------------------------------~~  101 (206)
T 3sr0_A           68 IEEVFPKHGNVIFDGFPRTVKQAEALDEMLEK----------------------------------------------KG  101 (206)
T ss_dssp             HHHHCCSSSCEEEESCCCSHHHHHHHHHHHHH----------------------------------------------TT
T ss_pred             HHHhhccCCceEecCCchhHHHHHHHHhhHHH----------------------------------------------hc
Confidence            66667777789999876665544443322211                                              11


Q ss_pred             ceE-EEEEEecCHHHHHHHHHHhhh
Q 010176          371 YRI-ELVGVVCDAYLAVVRGIRRAI  394 (516)
Q Consensus       371 y~I-~li~V~~d~elav~R~~~R~~  394 (516)
                      ..+ .++.+.||.++.+.|...|..
T Consensus       102 ~~~~~vi~l~v~~e~l~~Rl~~R~~  126 (206)
T 3sr0_A          102 LKVDHVLLFEVPDEVVIERLSGRRI  126 (206)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             cccceeeecCCCHHHHHHHHhCCcc
Confidence            112 247789999999999999964

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.37  E-value=3.6e-06  Score=76.79  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=28.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|+|.|+|||||||+++.|++.++       ..++|.|.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~-------~~~~d~d~~~   39 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD-------LVFLDSDFLI   39 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcccHHH
Confidence            488899999999999999999984       4899666553

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.34  E-value=4.6e-05  Score=72.72  Aligned_cols=86  Identities=21%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCCh----hhHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDA  286 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~----~~y~~e~v~~~~~~~  286 (516)
                      ..+|++-|+.||||||.++.|.+.+.-   +..++.. +|+.-.-...+++-+......+.    .++++.+     ...
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~---~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R-----~~~   73 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASR-----REH   73 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHH-----HHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHC---CCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH-----HHH
Confidence            468999999999999999999988731   2223332 23222122334554443211111    1112211     122


Q ss_pred             HHHHHHHHHhCCCcEEEeC
Q 010176          287 ASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDa  305 (516)
                      +...+..+|++|..||.|-
T Consensus        74 ~~~~i~p~l~~g~~Vi~DR   92 (205)
T 4hlc_A           74 LVLKVIPALKEGKVVLCDR   92 (205)
T ss_dssp             HHHTHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHcCCEEEecC
Confidence            3456788999999999994

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.33  E-value=8.4e-06  Score=78.69  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      -..|.++|++||||||+++.|.+ +       |+.+||+|.+.
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~-------g~~vidaD~ia   43 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-R-------GASLVDTDLIA   43 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-C-------CCcEEECcHHH
Confidence            35688999999999999999987 6       45899999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.31  E-value=1.1e-05  Score=77.46  Aligned_cols=40  Identities=25%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..++.+|.+.|+|||||||+++.|++.++       ..++|+|.+.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~~~~   52 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGAMYR   52 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcC-------CceecCCCeeE
Confidence            45678899999999999999999999884       48897776643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.31  E-value=7.2e-06  Score=77.36  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +..|.+.|+|||||||+++.|++.++       ..++++|++..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-------~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ-------WHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCcceee
Confidence            56899999999999999999999884       48897766543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.30  E-value=3.5e-06  Score=78.53  Aligned_cols=32  Identities=34%  Similarity=0.484  Sum_probs=28.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.|.|+|||||||+++.|++ +       ++.+++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~-------g~~~i~~d~~   34 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L-------GAYVLDADKL   34 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C-------CCEEEEccHH
Confidence            688999999999999999998 7       4589977765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.30  E-value=7.1e-06  Score=74.19  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..|++.|+|||||||+++.|++.+++       .++|+|++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~-------~~id~D~~~   42 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKL-------EVLDTDMII   42 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence            46888999999999999999999854       789776653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.29  E-value=4.7e-06  Score=77.31  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.|.|++||||||+++.|++.++       ..++|.|.+.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d~~~~   38 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSGLLYR   38 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC-------CceeccchHHH
Confidence            899999999999999999999884       48897776653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.28  E-value=5.1e-06  Score=78.06  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=34.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+|.++.+.|+|||||||+++.|...+..  .+....+++.|.+...
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d~~~~~   64 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMDDHIVE   64 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGCCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccCcccCC
Confidence            456899999999999999999999886521  0124566777877543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.23  E-value=1.3e-05  Score=78.08  Aligned_cols=96  Identities=22%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc--CCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST  284 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~--~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~  284 (516)
                      +..++.+|++.|++||||||+++.|++.+...  ..+..++.. .|+.-.-...+++-+.... ...... .-.....-+
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~-~~~~~~-~llf~a~R~   98 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQP-MDLETE-ALLMFAGRR   98 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSC-CCHHHH-HHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCC-CCHHHH-HHHHHHHHH
Confidence            34568899999999999999999999887320  000122222 1210000112344343321 111100 001111112


Q ss_pred             HHHHHHHHHHHhCCCcEEEeC
Q 010176          285 DAASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       285 ~~a~~la~~aL~~G~sVIvDa  305 (516)
                      ..+...+..+|++|..||+|-
T Consensus        99 ~~~~~~i~p~l~~g~~VI~DR  119 (227)
T 3v9p_A           99 EHLALVIEPALARGDWVVSDR  119 (227)
T ss_dssp             HHHHHTHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEEec
Confidence            223456888999999999994

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.22  E-value=1.8e-05  Score=77.29  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.+|.|.|+|||||||+++.|++.++       ..++|.|.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg-------~~~~d~g~i~   62 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLN-------WRLLDSGAIY   62 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC-------CCcCCCCcee
Confidence            456899999999999999999999985       4788665554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.21  E-value=3.5e-05  Score=72.42  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.+|.+.|++||||||+++.|++.++       ..++|.|.+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g-------~~~~~~d~~~   38 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELS-------MIYVDTGAMY   38 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC-------CceecCChHH
Confidence            367899999999999999999999884       4889776653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.21  E-value=1.2e-05  Score=75.74  Aligned_cols=43  Identities=28%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..++.++.|.|+|||||||+++.|+..+...  ++...+|.-|.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~   61 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGF   61 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCC
Confidence            3568899999999999999999998876421  112445555544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.21  E-value=1.6e-05  Score=77.20  Aligned_cols=91  Identities=18%  Similarity=0.133  Sum_probs=51.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cCCCCceEE-E-eCcccccchHHHHHHhcCCCCChh----hHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDM----LQTAELVH  280 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~~~~~av~-I-daD~ir~sD~irk~L~~~~~~~~~----~y~~e~v~  280 (516)
                      ...+|.+|++.|++||||||+++.|.+.+.. .  +..+++ . +|+.=.-...+++-+.+.......    .+.+.+  
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R--   92 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMR--   92 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHH--
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Confidence            4567999999999999999999999987732 1  112333 2 343211112234444432111110    112221  


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176          281 QSSTDAASSLLVTALNEGRDVIMDG  305 (516)
Q Consensus       281 ~~~~~~a~~la~~aL~~G~sVIvDa  305 (516)
                         +......+..+|++|..||.|=
T Consensus        93 ---~~~~~~~I~paL~~g~~VI~DR  114 (223)
T 3ld9_A           93 ---REHFVKIIKPSLMQKKIVICDR  114 (223)
T ss_dssp             ---HHHHHHTHHHHHHTTCEEEEES
T ss_pred             ---HHHHHHHHHHHHhcCCeEEEcc
Confidence               1223345778999999999995

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.17  E-value=2.7e-05  Score=76.19  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      -+.+.|+|||||||+++.|++.++       ..+|++++
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g-------~~~is~gd   41 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG-------IPQISTGD   41 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT-------CCEECHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC-------CCeeechH
Confidence            356789999999999999999984       48896543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.16  E-value=9.5e-06  Score=81.42  Aligned_cols=43  Identities=30%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ++.+|.|+|++||||||+++.|++.++..  +..+.+|+.|.|.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~--~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE--GVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHH--TCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeeEeecchhhc
Confidence            56789999999999999999999877310  11368999999976

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.15  E-value=1.2e-06  Score=82.89  Aligned_cols=23  Identities=39%  Similarity=0.663  Sum_probs=20.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|++.|||||||||+.+.|.++.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998775

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.12  E-value=1.3e-05  Score=82.71  Aligned_cols=37  Identities=30%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+|.+|+|.||+||||||++..|++.+       +..+||+|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-------~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF-------PLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS-------CEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC-------CCcEEccccc
Confidence            456799999999999999999999998       4589999987

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.12  E-value=1.2e-06  Score=82.99  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=24.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.+|++.|||||||||+++.|+..+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            457899999999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.11  E-value=9.1e-07  Score=82.71  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +|+|.|++||||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.10  E-value=2e-05  Score=80.81  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=32.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +|.+|+|+||+||||||++..|++.+       +..+|+.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l-------~~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADAL-------PCELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-------CCcEEeccch
Confidence            56799999999999999999999998       4589999976

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.09  E-value=7e-05  Score=72.56  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.+|.|.|++||||||+++.|++.+++       .++|.|.++
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-------~~~d~~~~~   49 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGI-------HFYDDDILK   49 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTC-------EEECHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCC-------cEEcHHHHH
Confidence            4678999999999999999999999954       889877654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.06  E-value=3e-05  Score=79.30  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=36.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....|.+|.|.|+|||||||+++.|...+......+...+|..|.+...
T Consensus        88 ~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~  136 (321)
T 3tqc_A           88 EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS  136 (321)
T ss_dssp             CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence            3567999999999999999999999876631011235678888887544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.04  E-value=9.1e-05  Score=71.42  Aligned_cols=27  Identities=26%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +|.+|++.|+|||||||+++.|++.++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999999884

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.00  E-value=7.5e-05  Score=70.81  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..+|.|.|++||||||+++.|++.+++       .++|.|.+
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~-------~~~D~~~~   40 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNI-------PLYSKELL   40 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTC-------CEECHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCc-------CEECHHHH
Confidence            458999999999999999999999954       78874433

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.00  E-value=4.8e-05  Score=77.83  Aligned_cols=85  Identities=21%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc---ccchH-----HHHHHhcCCCC------ChhhHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF---KETDV-----IYRALSSKGHH------DDMLQTA  276 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i---r~sD~-----irk~L~~~~~~------~~~~y~~  276 (516)
                      +|.+|+|.||+||||||++..|++.+       +..+|++|.+   +.-|.     --.++.+..|+      +...|+.
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~   74 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSV   74 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccH
Confidence            46789999999999999999999998       4589999976   21110     01112222110      1222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEE-eCC
Q 010176          277 ELVHQSSTDAASSLLVTALNEGRDVIM-DGT  306 (516)
Q Consensus       277 e~v~~~~~~~a~~la~~aL~~G~sVIv-DaT  306 (516)
                      ..    ....+.+.+...++.|+.+|+ =||
T Consensus        75 ~~----F~~~a~~~i~~i~~~gk~pIlVGGT  101 (322)
T 3exa_A           75 AD----FQDLATPLITEIHERGRLPFLVGGT  101 (322)
T ss_dssp             HH----HHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             HH----HHHHHHHHHHHHHhCCCcEEEEcCc
Confidence            22    233455688888889986554 445

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.99  E-value=6e-06  Score=80.66  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...+|.+|++.|++||||||+++.|++.+
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34678999999999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.96  E-value=0.00014  Score=67.17  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=23.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.++.+.|||||||||+++.|+..+
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            356789999999999999999999765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.93  E-value=4.4e-06  Score=77.15  Aligned_cols=26  Identities=15%  Similarity=0.365  Sum_probs=23.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +..++++.|||||||||+++.|...+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999999865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.92  E-value=5.8e-05  Score=69.78  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|.+|++.|+|||||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999987

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.92  E-value=0.00046  Score=65.18  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV  292 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~  292 (516)
                      +|++-|+-||||||.++.|.+.+.-  .+..+++. +|+.-.-...+++-+......+   .+.-..+..........+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~--~g~~v~~treP~~t~~~~~ir~~l~~~~~~~---~~~~ll~~a~r~~~~~~I~   76 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEK--RGKKVILKREPGGTETGEKIRKILLEEEVTP---KAELFLFLASRNLLVTEIK   76 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCSSHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEECCCCCcHHHHHHHHhhcccCCh---HHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999887732  11223332 2322111233444444322111   1111111111222335688


Q ss_pred             HHHhCCCcEEEeC
Q 010176          293 TALNEGRDVIMDG  305 (516)
Q Consensus       293 ~aL~~G~sVIvDa  305 (516)
                      .+|+.|..||.|-
T Consensus        77 ~~L~~g~~Vi~DR   89 (197)
T 3hjn_A           77 QYLSEGYAVLLDR   89 (197)
T ss_dssp             HHHTTTCEEEEES
T ss_pred             HHHHCCCeEEecc
Confidence            8999999999994

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.89  E-value=6.5e-05  Score=74.03  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...|++.|+|||||||+++.|++.+++       .++|.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~-------~~~d~d~~   82 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY-------TFFDCDTL   82 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC-------cEEeCcHH
Confidence            457889999999999999999999854       89966554

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.83  E-value=1.1e-05  Score=77.50  Aligned_cols=28  Identities=32%  Similarity=0.571  Sum_probs=24.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...++.+|.+.|++||||||+++.|+..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3456889999999999999999999865

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.81  E-value=2.4e-05  Score=75.24  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|.+|++.|++||||||+++.|++.+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.78  E-value=0.00012  Score=80.15  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .++.++++.|+|||||||+++.|+..+... .+....++|.|.++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~-~G~~i~~lDgD~~~  410 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEM-GGRCVTLLDGDIVR  410 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTT-CSSCEEEESSHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhccc-CCceEEEECCcHHH
Confidence            357899999999999999999999987421 00124468666553

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.71  E-value=4.5e-05  Score=73.47  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +-.+...++++.|||||||||+.+.|....
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            355678899999999999999999998865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.66  E-value=6.9e-05  Score=76.51  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=33.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..+|.+|+|+||+||||||++..|++.+       +..+|++|.+
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~   44 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSA   44 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEecccc
Confidence            3568899999999999999999999998       4588999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.57  E-value=5.5e-05  Score=78.00  Aligned_cols=36  Identities=22%  Similarity=0.499  Sum_probs=32.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ++.+|+|+||+||||||++..|++.+       +..+|+.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKF-------NGEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence            46799999999999999999999998       4589999987

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.49  E-value=1.4e-05  Score=76.28  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=25.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.++.+|++.|||||||||+.+.|+...
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            44578899999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.40  E-value=0.00012  Score=68.30  Aligned_cols=40  Identities=18%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .++.+|.+.|+|||||||+++.|+..++.     ...+++.|.+-
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE-----RVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG-----GEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecCccc
Confidence            46789999999999999999999987731     25778777654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.30  E-value=0.00029  Score=74.33  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.+|+|.||+||||||++..|++.++       ..+|++|.+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~   36 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSM   36 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCcc
Confidence            56899999999999999999999983       478999873

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.16  E-value=0.00021  Score=65.99  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=24.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.++++.|+|||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            457799999999999999999998876

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.11  E-value=0.002  Score=62.10  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++.+|++.|++||||||+++.|.+.+.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999999999984

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.09  E-value=0.00035  Score=67.42  Aligned_cols=30  Identities=37%  Similarity=0.471  Sum_probs=25.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .-.++.+|.|.|+|||||||+++.|+..++
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456788999999999999999999988764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.07  E-value=0.00067  Score=72.27  Aligned_cols=45  Identities=27%  Similarity=0.375  Sum_probs=36.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .+|.+|+++|++||||||++..|+..+.  ..+....++++|.++..
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~a  142 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPG  142 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchh
Confidence            3699999999999999999999987662  22346788999998764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.94  E-value=0.00099  Score=66.89  Aligned_cols=51  Identities=18%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc--ccCCCCceEEEeCcccccchHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAFKETDVIYR  261 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~--~~~~~~~av~IdaD~ir~sD~irk  261 (516)
                      ..++.+|.|.|+|||||||+++.|+..+.  .  ..+.+.+|+.|.+......++
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~--~~G~i~vi~~d~~~~~~~~~~  129 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP--EHRRVELITTDGFLHPNQVLK  129 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST--TCCCEEEEEGGGGBCCHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEecCCccCcHHHHH
Confidence            35688999999999999999999988653  1  123467788887754333333

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.88  E-value=0.0005  Score=68.53  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..+.|..+++.||||+|||++++.++..++.     ..+.+++
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-----~~i~v~~   69 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-----NPIMMSA   69 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-----CCEEEEH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeH
Confidence            3467889999999999999999999999854     5677744

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.86  E-value=0.00084  Score=67.34  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=38.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRAL  263 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L  263 (516)
                      ....|.+|.|+|+|||||||+++.|...+...+.....+.+ .-|.|-....++..+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l   83 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL   83 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence            45678999999999999999999998876420000123444 888875554444443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.73  E-value=0.00074  Score=73.13  Aligned_cols=43  Identities=7%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccc-cCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~~~~~av~IdaD~  252 (516)
                      .+++..|++.|+|||||||+++.|++.++. .+ +....++|.|.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g-~r~~~~lDgD~  435 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGG-GRYYKIFEHNN  435 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS-CCCEEECCCTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhc-CcceEEecCCC
Confidence            346789999999999999999999999852 11 12346787776

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.73  E-value=0.0012  Score=66.87  Aligned_cols=47  Identities=23%  Similarity=0.380  Sum_probs=36.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ...+|.++++.|+|||||||++..|+..+..  .+....+++.|.++..
T Consensus       100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~  146 (306)
T 1vma_A          100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAA  146 (306)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHH
T ss_pred             cCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHH
Confidence            3467899999999999999999999876632  1335677888988743

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.71  E-value=0.0014  Score=62.61  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|.-+++.|+||+||||+++.++.+++.     ..+.++...+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~   75 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEF   75 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHH
Confidence            45666889999999999999999998843     5667766554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.70  E-value=0.0014  Score=63.06  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.-+++.|+||+||||+++.++..++.     ..+.++..++.
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~~~   82 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSDFV   82 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCSST
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHHHH
Confidence            3555889999999999999999988743     45777665553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.64  E-value=0.00075  Score=63.21  Aligned_cols=26  Identities=42%  Similarity=0.723  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.++++.|||||||||+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35678999999999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.57  E-value=0.0016  Score=64.48  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=27.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +++.|||||||||+++.|+...+.     +.+.++..++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l   80 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL   80 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence            889999999999999999998743     5677765444

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.55  E-value=0.0024  Score=64.61  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...+.++.|.|+|||||||+++.|..-+..........+|.-|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            467899999999999999999999876532100123456655544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.52  E-value=0.00071  Score=64.36  Aligned_cols=28  Identities=29%  Similarity=0.548  Sum_probs=18.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHH-Hhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIM-KES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La-~~l  236 (516)
                      .+++.++.+.|||||||||+++.|+ ..+
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3457789999999999999999999 654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.51  E-value=0.002  Score=62.77  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|.-+++.|+||+||||+++.++..++.     ..+.++...+
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~   87 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSEL   87 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHH
Confidence            34566889999999999999999998843     4566655443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.49  E-value=0.0026  Score=64.08  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...+|.++.+.|+|||||||+++.|+..+..  .++...+.+.|.++
T Consensus        96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR  140 (302)
T ss_dssp             CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence            4567899999999999999999999876632  12234445556665

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.48  E-value=0.0022  Score=62.95  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.-+++.|+||+||||+++.++..++.     ..+.+++.++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l   90 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASL   90 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHH
Confidence            4667899999999999999999998843     4566665444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.47  E-value=0.0014  Score=59.71  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..+++.|||||||||+++.++..+
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36778999999999999999998766

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.46  E-value=0.018  Score=55.17  Aligned_cols=45  Identities=16%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL  263 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L  263 (516)
                      ..+.+|+++|.|||||+|+++.+.+.++.    .++.++     .=+|++++..
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~----~~~~vv-----~msD~iK~~~   53 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGA----DVCAVL-----RLSGPLKEQY   53 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCT----TTEEEE-----CTHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCC----CCceEE-----EccHHHHHHH
Confidence            35678999999999999999999886632    123444     2367776543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.43  E-value=0.0027  Score=64.81  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+|.++.+.|+|||||||+++.|+..+..  .++...+.+.|.++..
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~  171 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAG  171 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccc
Confidence            467999999999999999999999876532  1234556667776643

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.0023  Score=68.02  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+.|+=|++.||||+|||++|++++.+.+.     ....+++.++
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l  251 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQL  251 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence            356888999999999999999999999854     4566655444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.0023  Score=68.06  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...|+=|++.||||+|||++|++++.+++.     ..+.|++.++
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l  251 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGI  251 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence            356788999999999999999999999854     5566655444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.43  E-value=0.0028  Score=64.03  Aligned_cols=42  Identities=19%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +|.++.+.|+|||||||+++.|+..+..  .++...+.+.|.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCC
Confidence            6889999999999999999999876633  12344556666665

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.42  E-value=0.0027  Score=63.10  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...|.+++++|+||+||||+++.++..++.     ..+.+|+...
T Consensus        45 ~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~   84 (324)
T 3u61_B           45 GKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC   84 (324)
T ss_dssp             TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc
Confidence            355788999999999999999999998853     5566765443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.41  E-value=0.0022  Score=61.60  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+..|+|.|+|||||||++..|++..       + .+|+.|.+
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g-------~-~iIsdDs~   67 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG-------H-RLIADDRV   67 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT-------C-EEEESSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC-------C-eEEecchh
Confidence            46889999999999999999999875       2 67777754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.40  E-value=0.0024  Score=67.74  Aligned_cols=45  Identities=20%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..|.+|++.|++||||||++..|+..+..  .+....++++|.++..
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~  139 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPA  139 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchh
Confidence            46899999999999999999999876632  2345678899988754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0025  Score=67.60  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|+=|++.||||+|||++|++++.+++.     ..+.|++.++
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~l  242 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSEF  242 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecchh
Confidence            45788999999999999999999999854     4566654443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.39  E-value=0.0019  Score=57.43  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=23.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+..+++.|++|+||||+++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345667899999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.38  E-value=0.0028  Score=59.05  Aligned_cols=42  Identities=5%  Similarity=0.080  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+..+++.|+||+||||+++.++..+...  .....+++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHH
Confidence            45678899999999999999999876421  2245778776654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.38  E-value=0.0018  Score=60.65  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -.+..++.+.|||||||||+.+.|+.-+
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3556789999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.37  E-value=0.0017  Score=62.87  Aligned_cols=46  Identities=22%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+..
T Consensus        26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~   71 (235)
T 3tif_A           26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTND   71 (235)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEccc
Confidence            34567789999999999999999999865532   23568887766643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0062  Score=64.12  Aligned_cols=39  Identities=15%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.|+=+++.||||+|||++|++++.+.+.     ..+.|++.++
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l  218 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSGAEL  218 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEhHHh
Confidence            45777999999999999999999999854     4556654443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.33  E-value=0.0016  Score=61.89  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -.++.++.+.|||||||||+.+.|+..+
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3567789999999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.33  E-value=0.0036  Score=64.83  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...+|.++.+.|+|||||||+++.|+..+..  ..+...+...|.++
T Consensus       153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r  197 (359)
T 2og2_A          153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR  197 (359)
T ss_dssp             CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccc
Confidence            4567999999999999999999999876632  12234445556665

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.31  E-value=0.0036  Score=63.65  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....|.+|.+.|++|+||||++..|+..+..  .+....+++.|.++..
T Consensus       101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~  147 (320)
T 1zu4_A          101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAG  147 (320)
T ss_dssp             CTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchh
Confidence            3467899999999999999999999876632  2346678899987643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.29  E-value=0.0028  Score=62.46  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ....++++.|||||||||+.+.|+..+...  ..+.+.++.|.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i   64 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI   64 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc
Confidence            456799999999999999999998765320  024566655544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.27  E-value=0.004  Score=61.97  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=28.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      ..|.-+++.||||+||||+++.++..++.     +.+.++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~   81 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK   81 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE
Confidence            45677899999999999999999998743     455663

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.27  E-value=0.0029  Score=61.72  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.-+++.|+||+||||+++.++..++.     ..+.+++..+.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~~~   87 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT   87 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchhcc
Confidence            4556788999999999999999998843     56777776654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.26  E-value=0.0036  Score=58.01  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=30.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +...++++.|+|||||||++..++...     +.+.++++.+.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~   55 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG   55 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence            456799999999999999999998722     23667887654

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.26  E-value=0.019  Score=59.84  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=22.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .++.+|.+-|+-||||||+++.|++.+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4567899999999999999999998873

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.012  Score=59.77  Aligned_cols=167  Identities=14%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ..|.+|++-|.-||||||..+.|.+.+..    .+..++-...  .++.+   +                .+..    ..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp----rg~~V~~~~~--Pt~eE---~----------------~~~y----l~  134 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNP----RSARVVALTK--PTETE---R----------------GQWY----FQ  134 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCT----TTEEEEECCS--CCHHH---H----------------TSCT----TH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcc----cCCeEEEeCC--cChHH---H----------------hchH----HH
Confidence            56999999999999999999999998853    2443441000  01101   0                0000    01


Q ss_pred             HHHHHH-hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176          290 LLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR  368 (516)
Q Consensus       290 la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~  368 (516)
                      .....| +.|.-||+|-++-..--.+.+       +        |+      -..+.|-..+..-      ...|+....
T Consensus       135 R~~~~LP~~G~IvIfDRswYs~v~~~rv-------~--------g~------~~~~e~~~~~~~I------n~FE~~L~~  187 (304)
T 3czq_A          135 RYVATFPTAGEFVLFDRSWYNRAGVEPV-------M--------GF------CTPDQYEQFLKEA------PRFEEMIAN  187 (304)
T ss_dssp             HHHTTCCCTTCEEEEEECGGGGTTHHHH-------H--------TS------SCHHHHHHHHHHH------HHHHHHHHH
T ss_pred             HHHHhcccCCeEEEEECCcchHHHHHHH-------h--------cC------CCHHHHHHHHHHH------HHHHHHHHh
Confidence            233445 789999999776543211111       0        10      0111111111111      011112233


Q ss_pred             CCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc----eEEEEecC
Q 010176          369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD----NARLYCTN  432 (516)
Q Consensus       369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD----~~~lydnn  432 (516)
                      .|+.+.-++++.+++....|...|...-.+   --|.+. .+..|.++...+..+....+    .|++.|.|
T Consensus       188 ~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~  259 (304)
T 3czq_A          188 EGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGN  259 (304)
T ss_dssp             HTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECS
T ss_pred             CCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECC
Confidence            566677789999999999999888432111   122222 24566777777766655432    35555533

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.21  E-value=0.0042  Score=62.20  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ir~s  256 (516)
                      ...|..+++.|+||+||||+++.++..+...    +.....+.+|+......
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   92 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP   92 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence            3557789999999999999999998876110    00114567876555443

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.20  E-value=0.003  Score=61.35  Aligned_cols=45  Identities=13%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             cccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          206 ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       206 ~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   66 (243)
T 1mv5_A           22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPI   66 (243)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEES
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEh
Confidence            335567889999999999999999999865532   235677765444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.19  E-value=0.0024  Score=59.19  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.+.|+|||||||+.+.|+..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999998876

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.19  E-value=0.0044  Score=60.20  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=25.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...|.-+++.|+||+||||+|+.++...+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            34577899999999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.18  E-value=0.0026  Score=61.08  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=25.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      +++.|+|||||||+++.++.....     +.+.++.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~   82 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARV-----PFITASG   82 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH
Confidence            889999999999999999988732     5566643

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=96.18  E-value=0.02  Score=58.70  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++..|.+-|+-||||||+++.|++.+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            357899999999999999999998773

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.16  E-value=0.0039  Score=56.07  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ....+++.|+|||||||+++.++.....  .+...++++..++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhh
Confidence            3456788999999999999999987632  11236788776554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.16  E-value=0.0035  Score=57.28  Aligned_cols=28  Identities=21%  Similarity=0.612  Sum_probs=24.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -+...++.+.|+|||||||+.+.|+..+
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3556789999999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.14  E-value=0.0049  Score=66.59  Aligned_cols=45  Identities=24%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~  255 (516)
                      ....|.++.|.|+|||||||+++.|+..+..   ..+-+.| +.|.++.
T Consensus       289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~  334 (503)
T 2yhs_A          289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRA  334 (503)
T ss_dssp             CSCTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCH
T ss_pred             eccCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccch
Confidence            4567999999999999999999999876532   1234555 5777763

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.13  E-value=0.0046  Score=62.09  Aligned_cols=46  Identities=20%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .+|.++++.|++||||||++..|+..+.. ..+....+++.|.++..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~  148 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIA  148 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccch
Confidence            46789999999999999999999876631 11235678999987643

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0039  Score=66.74  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|+=||+.||||+|||++|++++.+++.     ..+.+++.++
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L  279 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSEL  279 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHh
Confidence            56888999999999999999999999854     4556655444

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.12  E-value=0.0044  Score=62.57  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|.-+++.||||+|||++++.++.++..    ...+.+++.++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l   82 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDL   82 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSS
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHH
Confidence            34578899999999999999999998721    24566766554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.11  E-value=0.0027  Score=59.23  Aligned_cols=43  Identities=12%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcccc---C-CCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS---G-AATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~---~-~~~~av~IdaD~  252 (516)
                      +...++.+.|+|||||||+++.|+......   + ...+.++++.+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            356799999999999999999998743110   0 122357776654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.10  E-value=0.0027  Score=62.86  Aligned_cols=45  Identities=20%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++...+..
T Consensus        33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLNS   77 (266)
T ss_dssp             EEETTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEETTEETTT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECCc
Confidence            4456789999999999999999999865532   24668887766643

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.09  E-value=0.0052  Score=65.99  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY  260 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir  260 (516)
                      .+..+++.||||+||||+++.++.++++     ..+.+|+.++...+.+.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~-----~~i~in~s~~~~~~~~~  120 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNASDVRSKTLLN  120 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTTSCCCHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEeCCCcchHHHHH
Confidence            4568899999999999999999999854     56777777766554443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.06  E-value=0.0032  Score=63.21  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .|.-+++.||||+|||++++.++.+.+.     ..+.+++
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~   84 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS   84 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEch
Confidence            4667899999999999999999998843     4555643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.05  E-value=0.0027  Score=56.62  Aligned_cols=26  Identities=15%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..+++.|++|+||||+++.++..+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35567899999999999999999876

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0051  Score=65.34  Aligned_cols=41  Identities=15%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.|+=|++.||||+|||++|++++.+.+.     ..+.+++.++.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v~~s~l~  253 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRIVGSELI  253 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEEESGGGC
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEEEHHHhh
Confidence            355788999999999999999999999854     45666554443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.03  E-value=0.0038  Score=57.37  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|..+++.|++|+||||+++.++..+.
T Consensus        43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           43 RIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456889999999999999999998774

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0051  Score=62.68  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=36.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-----CCceEEEeCcccccchHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-----ATNAVVVEADAFKETDVIYRA  262 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-----~~~av~IdaD~ir~sD~irk~  262 (516)
                      ....|..+++.||||+|||++++.++.++.-...     .-..+.||+-.+.....++..
T Consensus        41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~  100 (318)
T 3te6_A           41 MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK  100 (318)
T ss_dssp             HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred             cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence            4567888899999999999999999988731000     013567877666554444433

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.00  E-value=0.0064  Score=55.29  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.|++|+||||+++.++..+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999998875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.99  E-value=0.0043  Score=58.42  Aligned_cols=40  Identities=18%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...++++.|+|||||||++..++.....  .+.+.++++.+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~   61 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEE   61 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence            4678999999999999999988765421  123667886655

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.97  E-value=0.0087  Score=57.26  Aligned_cols=42  Identities=17%  Similarity=0.246  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...++.++++.|.+|+||||++..|+..+.   .+....+||.|.
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~   51 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDT   51 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCS
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence            456789999999999999999999997663   133567888774

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.96  E-value=0.0077  Score=60.10  Aligned_cols=38  Identities=26%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.-+++.|+||+||||+++.++...+.     ..+.++...+.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~   92 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSA-----NIKTTAAPMIE   92 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEecchhcc
Confidence            445789999999999999999998753     55667665543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.95  E-value=0.0029  Score=60.82  Aligned_cols=44  Identities=23%  Similarity=0.197  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|-+.++.-.+.
T Consensus        26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   69 (224)
T 2pcj_A           26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVD   69 (224)
T ss_dssp             EEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            4456778999999999999999999865432   2356778665553

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=95.95  E-value=0.091  Score=53.85  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++..|.+-|+-||||||+++.|++.+.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999999884

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.93  E-value=0.0056  Score=62.54  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..|.-+++.|+||+||||+++.++..++.     ..+.+++.++
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l  153 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSL  153 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHh
Confidence            34667899999999999999999998843     4566765444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.93  E-value=0.0055  Score=61.95  Aligned_cols=27  Identities=30%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .|..+++.||||+||||+++.++..++
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            456688899999999999999999874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.93  E-value=0.0041  Score=57.85  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.++.++|++||||||++..|+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4467888899999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.93  E-value=0.0039  Score=58.60  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      +++|.|++||||||+|..|+.. +.     ..++|.+.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~-----~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-AP-----QVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CS-----SEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CC-----CeEEEecC
Confidence            3789999999999999999866 42     45778653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.92  E-value=0.0037  Score=61.89  Aligned_cols=46  Identities=17%  Similarity=0.158  Sum_probs=34.5

Q ss_pred             cccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          206 ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       206 ~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...-....++.|.|+|||||||+.+.|+.-+.+   ..|.+.++.-.+.
T Consensus        39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~   84 (271)
T 2ixe_A           39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV   84 (271)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGG
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcc
Confidence            334567789999999999999999999875532   2366888765554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.91  E-value=0.0043  Score=61.75  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.+..++.+.|||||||||+.+.|+.-...   ..|.+.++...+
T Consensus        30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i   72 (275)
T 3gfo_A           30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPI   72 (275)
T ss_dssp             EEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence            4456788999999999999999999865532   235688877665

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.91  E-value=0.0042  Score=57.32  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      |.-+++.|+||+||||+++.++..+..  .+...++++.
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~   90 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYV   90 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEh
Confidence            467888999999999999999987632  1224456643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.90  E-value=0.0039  Score=57.91  Aligned_cols=40  Identities=13%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...++++.|+|||||||+++.++.....  .+....+++.+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~   61 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE   61 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc
Confidence            4578999999999999999999865421  122456676554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.89  E-value=0.0037  Score=61.56  Aligned_cols=44  Identities=27%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-....++.+.|+|||||||+.+.|+.-+.+   ..|.+.++...+
T Consensus        27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~   70 (262)
T 1b0u_A           27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNI   70 (262)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence            34567789999999999999999999865532   235677876555

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.89  E-value=0.0034  Score=60.86  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=25.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-.+..++.+.|+|||||||+.+.|+.-.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44667899999999999999999998655

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.88  E-value=0.0045  Score=60.54  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=25.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      +++.|+|||||||+++.++....     .+.+.++.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~  106 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASG  106 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred             EEEECCCcChHHHHHHHHHHHcC-----CCEEEecH
Confidence            88999999999999999998873     25566643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.88  E-value=0.0034  Score=61.30  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+.
T Consensus        31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~   74 (247)
T 2ff7_A           31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLA   74 (247)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence            4456778999999999999999999876532   2356788765554

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.87  E-value=0.0021  Score=62.07  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |.-+++.|+||+||||+++.++...+.     ..+.++...+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~   80 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGGSSF   80 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCSCTT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEechHHH
Confidence            344788999999999999999998743     3455655444

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.85  E-value=0.0036  Score=61.35  Aligned_cols=44  Identities=25%  Similarity=0.169  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+.
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~   72 (257)
T 1g6h_A           29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDIT   72 (257)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECT
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence            4456778999999999999999999865532   2356788765553

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.85  E-value=0.0047  Score=60.12  Aligned_cols=42  Identities=21%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-.. .++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+
T Consensus        21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~   62 (240)
T 2onk_A           21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADI   62 (240)
T ss_dssp             EECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             EECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            4455 88999999999999999999875532   235677765444

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.85  E-value=0.0042  Score=56.36  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      |-+.+|.|+|||||||+.++|.--++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            44889999999999999999987653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.85  E-value=0.0036  Score=60.31  Aligned_cols=39  Identities=28%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      .-++..++.+.|+|||||||+.+.|+.-+.+   ..|.+.++
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~   68 (229)
T 2pze_A           30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHS   68 (229)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEEC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEEC
Confidence            4456778999999999999999999876532   12445554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.85  E-value=0.0036  Score=60.75  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+.
T Consensus        28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~   71 (240)
T 1ji0_A           28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDIT   71 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence            4456778999999999999999999865532   2356778765553

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.83  E-value=0.01  Score=58.16  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+++.|+||+||||+++.++..+..  .....+.++...+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~~   89 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEK   89 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCST
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeeccccccc
Confidence            47899999999999999999988732  1123577887776544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.80  E-value=0.0025  Score=59.05  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .++.|.|+|||||||+++.|...+...+-..+.+.+|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            46778889999999999999877643111135566665543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.80  E-value=0.0069  Score=59.74  Aligned_cols=38  Identities=32%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+.-+++.|++|+||||+++.++..++.     ..+.++...+
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~   74 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAI   74 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecccc
Confidence            3456788999999999999999988743     4566655444

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.79  E-value=0.007  Score=59.39  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCC--CCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~--~~~av~IdaD~i  253 (516)
                      ..+.-+++.|+||+||||+++.++..+...+.  ....+.+++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            34556889999999999999999887632110  113466665544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.79  E-value=0.0043  Score=61.33  Aligned_cols=46  Identities=17%  Similarity=0.266  Sum_probs=34.0

Q ss_pred             ccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ....-....++.+.|+|||||||+.+.|+.-..+   ..|-+.++.-.+
T Consensus        43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i   88 (263)
T 2olj_A           43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINL   88 (263)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred             eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence            3344567789999999999999999999865532   235677876544

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.77  E-value=0.0032  Score=60.42  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++...+
T Consensus        31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~   73 (214)
T 1sgw_A           31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPI   73 (214)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEh
Confidence            4456678889999999999999999865532   235677765444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.77  E-value=0.004  Score=62.12  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+.-+++.|+||+||||+++.++..+...  ....+++++..+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~   76 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF   76 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH
Confidence            34557889999999999999999876210  125677866554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.76  E-value=0.0054  Score=56.95  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..++++.|+|||||||+.+.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4467888999999999999998865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.75  E-value=0.0048  Score=60.70  Aligned_cols=45  Identities=22%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+.
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~   80 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVV   80 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            34567789999999999999999999865532   2356777665443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.74  E-value=0.011  Score=59.47  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+++.|+||+||||+++.++..+.... ....+.+++....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~   85 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYR   85 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCC
Confidence            788999999999999999998773200 1245677754443

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.72  E-value=0.0035  Score=63.48  Aligned_cols=47  Identities=19%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..-+...++.|.|+|||||||+.+.|+.-+.+   ..|.+.+|.-.+...
T Consensus        75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~  121 (306)
T 3nh6_A           75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQV  121 (306)
T ss_dssp             EEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSB
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccC
Confidence            34466789999999999999999999865532   236688887776643

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.70  E-value=0.0078  Score=60.62  Aligned_cols=28  Identities=32%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...|..+++.|++|+||||+++.++..+
T Consensus        42 ~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3557789999999999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.70  E-value=0.005  Score=60.71  Aligned_cols=44  Identities=25%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-....++.+.|+|||||||+.+.|+.-..+   ..|.+.++.-.+
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~   71 (266)
T 2yz2_A           28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERK   71 (266)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence            34567789999999999999999999865432   235677766444

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.69  E-value=0.0099  Score=62.96  Aligned_cols=46  Identities=30%  Similarity=0.431  Sum_probs=36.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~ir~s  256 (516)
                      ...|.+|+++|++|+||||++..|+..+.-  . +....++++|.++..
T Consensus        97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~--~~G~kVllvd~D~~r~~  143 (433)
T 2xxa_A           97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLRE--KHKKKVLVVSADVYRPA  143 (433)
T ss_dssp             SSSSEEEEEECSTTSSHHHHHHHHHHHHHH--TSCCCEEEEECCCSSTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEEecCCCCcc
Confidence            356899999999999999999999876632  1 346788999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.68  E-value=0.007  Score=60.44  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~i  253 (516)
                      ...|..+++.|++|+||||+++.++..+..... ....+++++...
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~   87 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI   87 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence            456778999999999999999999986621000 114567765433

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.62  E-value=0.0073  Score=61.41  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .|.-+++.||||+||||+|+.++..++.     ..+.+++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~-----~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDV-----PFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEech
Confidence            3556788999999999999999998843     4455544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.62  E-value=0.0052  Score=61.23  Aligned_cols=45  Identities=18%  Similarity=0.033  Sum_probs=33.2

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..-.+..++.+.|+|||||||+.+.|+.-+.+   ..|.+.++.-.+.
T Consensus        42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~   86 (279)
T 2ihy_A           42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPG   86 (279)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcc
Confidence            34456788999999999999999999875532   2356777665443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.61  E-value=0.01  Score=62.54  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...++++.||+||||||+.+.|+..+..   ..+-+++.-|.+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~---~~g~I~~~ed~i  205 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNS---SERNILTVEDPI  205 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC---TTSCEEEEESSC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEEecccc
Confidence            4568999999999999999999987642   123455544544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.61  E-value=0.01  Score=52.51  Aligned_cols=36  Identities=17%  Similarity=0.053  Sum_probs=25.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|+||+|||++|+.+......  .....+ ++...+
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~~~--~~~~~v-~~~~~~   62 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFGRN--AQGEFV-YRELTP   62 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSSTT--TTSCCE-EEECCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc--cCCCEE-EECCCC
Confidence            678999999999999999886521  112345 755443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.55  E-value=0.0087  Score=63.73  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.-|++.||||+||||+++.|+..++.     ..+.+++..+.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~-----~~~~v~~~~~~   87 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT   87 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCC-----Cceeecchhhc
Confidence            4566899999999999999999999854     45666654443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.54  E-value=0.0095  Score=60.77  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.-+++.|+||+||||+++.++..++.     ..+.++...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~-----~~~~~~~~~~  108 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDI-----PIAISDATSL  108 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecchhh
Confidence            445788999999999999999998843     4566665444

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.53  E-value=0.01  Score=61.10  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.-+++.|+||+|||++++.++...+.     ..+.+++.++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~  185 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT  185 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence            567899999999999999999998843     55667665543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.53  E-value=0.0059  Score=57.47  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~  252 (516)
                      +...++++.|+|||||||++..++.....+    +...+.++++.+.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            356789999999999999999998742110    0123678887655

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.50  E-value=0.0072  Score=62.93  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-+.+.++++.|||||||||+++.|+...
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44667899999999999999999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.49  E-value=0.006  Score=59.51  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh--ccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE--SFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~--l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-  ..+   ..|.+.++.-.+.
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~   70 (250)
T 2d2e_A           25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENIL   70 (250)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECC
Confidence            4456778999999999999999999874  211   1256778765554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.49  E-value=0.006  Score=59.97  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             ccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ....-....++.+.|+|||||||+.+.|+.-+.    ..|.+.++.-.+.
T Consensus        39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~G~I~i~g~~i~   84 (260)
T 2ghi_A           39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----AEGDIKIGGKNVN   84 (260)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC----CEEEEEETTEEGG
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhccCC----CCeEEEECCEEhh
Confidence            334556778999999999999999999986542    1366888765554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.48  E-value=0.007  Score=59.71  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK  254 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir  254 (516)
                      ..-....++.+.|+|||||||+.+.|+.-.  ..   ..|-+.++.-.+.
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~   87 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLL   87 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGG
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECC
Confidence            345677899999999999999999998742  11   1256778765553

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.45  E-value=0.0065  Score=62.14  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=27.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .|.-+++.||||+||||+++.++..++.     ..+.+++
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~  117 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS  117 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeH
Confidence            3455788899999999999999998843     4455533

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.41  E-value=0.0086  Score=61.59  Aligned_cols=35  Identities=26%  Similarity=0.563  Sum_probs=27.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      ..++++.|+|||||||+.+.|......   ..+.+.++
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie  209 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIE  209 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence            457889999999999999999987643   24567775

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.41  E-value=0.015  Score=66.28  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=26.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ...|+=|++.||||+|||+++++++.+++.
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~  264 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGA  264 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            356889999999999999999999999853

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.40  E-value=0.014  Score=61.65  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .|.++++.|++||||||++..|+..+..  .+....+++.|.++..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~r~a  140 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA  140 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSSCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccccCch
Confidence            6888999999999999999999877632  2346678899988754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.40  E-value=0.0082  Score=59.10  Aligned_cols=42  Identities=17%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      -....++++.|+|||||||+++.++...... .+....+++.+
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e   73 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE   73 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence            3567799999999999999999998765321 11134566554

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.39  E-value=0.011  Score=62.33  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.-+++.||||+||||+++.++..+.    ....+.+++.++
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~l  204 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL  204 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC--
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHHH
Confidence            456788999999999999999999872    124556655443

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.37  E-value=0.0096  Score=53.47  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      |.+.+|.|+|||||||+..+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999987554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.36  E-value=0.012  Score=63.07  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.-+++.||||+||||+++.++.+.+.     ..+.++..++
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~   85 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDF   85 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHH
Confidence            4555889999999999999999998743     4566765444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.35  E-value=0.0057  Score=64.79  Aligned_cols=44  Identities=18%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..|..|++.|++|+||||++..|+..+..  .+....++++|.++.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~--~G~kVllv~~D~~r~  140 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQK--RGLKPALIAADTYRP  140 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHH--HHCCEEEECCSCCCT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccccCc
Confidence            45788999999999999999999876521  122568899998764

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.33  E-value=0.0097  Score=56.43  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..|.++++.|+||||||+++..+...
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45779999999999999999886544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.32  E-value=0.012  Score=59.08  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      |.++++.|++|+||||++..|+..+..  .+....+++.|..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~  140 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPA  140 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHH
Confidence            889999999999999999999876632  2345688899987653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.32  E-value=0.0063  Score=59.62  Aligned_cols=43  Identities=23%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|+|||||||+.+.|+.-+..   . |.+.++...+.
T Consensus        22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~   64 (249)
T 2qi9_C           22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLE   64 (249)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECC
Confidence            4456778999999999999999999866532   2 56777665553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.32  E-value=0.0072  Score=57.56  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..++.+.|+|||||||+.+.|+.-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457888999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.30  E-value=0.007  Score=62.35  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY  260 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir  260 (516)
                      ..-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+....+.+
T Consensus        21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~   71 (348)
T 3d31_A           21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEK   71 (348)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHH
T ss_pred             EEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhh
Confidence            34566788999999999999999999865432   2356788765554333333

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.29  E-value=0.015  Score=58.21  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +|.++.+.|++|+||||++..|+..+..  .+....+++.|..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~  139 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP  139 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH
Confidence            6888888899999999999999876532  234567788887654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.29  E-value=0.012  Score=63.46  Aligned_cols=45  Identities=18%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..|..|+++|++||||||++..|+..+.-  .+....+|++|.++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~a  143 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAG  143 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchh
Confidence            56889999999999999999999976521  1235688999988754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.28  E-value=0.011  Score=61.13  Aligned_cols=26  Identities=35%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..++++.|||||||||+.+.++..+.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            45899999999999999999987653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.23  E-value=0.0068  Score=59.42  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-....++.+.|+|||||||+.+.|+.-.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44567789999999999999999998655

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.23  E-value=0.01  Score=61.58  Aligned_cols=49  Identities=20%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .....-.+..++.+.|+|||||||+.+.|+.-..+   ..|.+.++..++..
T Consensus        46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~   94 (366)
T 3tui_C           46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTT   94 (366)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSS
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCc
Confidence            33445567789999999999999999999865432   23668887766654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.23  E-value=0.015  Score=61.37  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.-+++.||||+||||+|+.++..++.   ....+.+++-++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~  101 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEV  101 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHH
Confidence            4566889999999999999999999852   124455654433

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.22  E-value=0.0092  Score=61.81  Aligned_cols=43  Identities=19%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i   68 (359)
T 3fvq_A           26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTI   68 (359)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence            4466788999999999999999999875532   235677766554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.21  E-value=0.0089  Score=59.84  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.|. +++.||||+||||+++.++..+
T Consensus        34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           34 RDLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             TCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            34466 8899999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.21  E-value=0.0081  Score=60.86  Aligned_cols=30  Identities=17%  Similarity=0.079  Sum_probs=25.9

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..-++..++.|.|||||||||+++.|+.-+
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            345677899999999999999999998765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.18  E-value=0.011  Score=61.01  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=24.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ....++++.|+|||||||+.+.|+..+.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4567999999999999999999987653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.17  E-value=0.0093  Score=58.92  Aligned_cols=42  Identities=19%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-. ..++.+.|+|||||||+.+.|+.-. +   ..|-+.++...+
T Consensus        26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---~~G~I~~~g~~~   67 (263)
T 2pjz_A           26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-P---YSGNIFINGMEV   67 (263)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C---CEEEEEETTEEG
T ss_pred             EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C---CCcEEEECCEEC
Confidence            3456 7789999999999999999998655 3   235677765433

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.16  E-value=0.015  Score=58.62  Aligned_cols=24  Identities=42%  Similarity=0.744  Sum_probs=20.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++++.|++||||||+.+.|+...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            477889999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.16  E-value=0.011  Score=61.65  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-....++.+.|||||||||+.+.|+.-...   ..|-+.++...+.
T Consensus        25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~   68 (381)
T 3rlf_A           25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMN   68 (381)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECT
T ss_pred             EECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECC
Confidence            4566789999999999999999999865532   2356778766554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.16  E-value=0.014  Score=54.91  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...-+++.|+||+||||++..|.+.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3567899999999999999999975

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=95.16  E-value=0.023  Score=55.64  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+|.++|++||||||+++.|.+.++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g   26 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS   26 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999998774

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.13  E-value=0.02  Score=58.43  Aligned_cols=42  Identities=19%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ..++..|+++|.||+||||++..|+..+..  .+....+++.|.
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV~vi~~Dp  117 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE--RGHRVAVLAVDP  117 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEEEC-
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHh--CCCceEEEecCC
Confidence            346778899999999999999999876521  233566777763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.13  E-value=0.026  Score=54.34  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS  265 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~  265 (516)
                      .-+++.|+||+|||++++.+......  .....+.+|...+.. +.....+++
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~~~~~-~~~~~~l~g   79 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALNE-NLLDSELFG   79 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGGGSCH-HHHHHHHHC
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecCCCCh-hHHHHHhcC
Confidence            34678999999999999999987632  122467788766632 333444555

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.13  E-value=0.014  Score=60.35  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +..+++|.|+|||||||++..++.....  .+..+++|++....
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~  101 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHAL  101 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence            5689999999999999999999876522  12346789887643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.10  E-value=0.01  Score=60.35  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE  249 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id  249 (516)
                      ..++++.|+|||||||+.+.|+.....   ..+.+.++
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~  205 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIE  205 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEEC
Confidence            457889999999999999999876643   23566665

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.10  E-value=0.0097  Score=55.82  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.+.|+|||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47789999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.09  E-value=0.01  Score=59.64  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      |..+++.||||+||||+++.++..+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            47889999999999999999999884

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.08  E-value=0.012  Score=54.70  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=21.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..++++.|+|||||||++..++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999997777654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.07  E-value=0.012  Score=60.83  Aligned_cols=45  Identities=20%  Similarity=0.218  Sum_probs=33.2

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~   68 (362)
T 2it1_A           24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVT   68 (362)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECT
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence            34566788999999999999999999865432   2356777665553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.07  E-value=0.013  Score=60.73  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i   67 (359)
T 2yyz_A           24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLV   67 (359)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEEC
Confidence            34566788999999999999999999865432   235677766544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.99  E-value=0.011  Score=57.78  Aligned_cols=27  Identities=19%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..+++|.|+|||||||++..++...
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998644

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.97  E-value=0.019  Score=61.92  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |.=+++.||||+||||+++.++.....     +.+.++.-++
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~  100 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDF  100 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHH
Confidence            444899999999999999999988742     5677776554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.96  E-value=0.012  Score=60.94  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i   79 (355)
T 1z47_A           37 QIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRV   79 (355)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence            4456778999999999999999999865432   235677766544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.92  E-value=0.014  Score=60.72  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i   75 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDV   75 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence            34566789999999999999999999865432   235677766444

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.90  E-value=0.011  Score=57.06  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=23.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...+++.||||+||||++..|+..+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999998873

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.83  E-value=0.013  Score=57.86  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.+.|+|||||||+.+.|....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46788999999999999998765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.81  E-value=0.012  Score=59.03  Aligned_cols=32  Identities=34%  Similarity=0.445  Sum_probs=26.3

Q ss_pred             ccccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....-....++.+.|+|||||||+.+.|+.-+
T Consensus        57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33355677899999999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.81  E-value=0.013  Score=58.83  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      |. +++.||||+||||+++.++..+.
T Consensus        47 ~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           47 PH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            44 78899999999999999998863

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.80  E-value=0.018  Score=62.78  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-++...+.+.|+|||||||+.+.|+.-+.+   ..|.+.+|.-++.+
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~  409 (582)
T 3b5x_A          365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDV---DSGSICLDGHDVRD  409 (582)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEhhh
Confidence            3456678999999999999999999876543   24668887755543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.80  E-value=0.04  Score=51.08  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+..+++.|.+||||||+...|+..+..   ......++.|.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~---~~~~~~i~~d~   67 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGN---EVKIGAMLGDV   67 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTT---TSCEEEEECSC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEecCC
Confidence            4556778899999999999999987521   12334565544

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.74  E-value=0.014  Score=60.73  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~   67 (372)
T 1g29_1           25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLV   67 (372)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred             EEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEEC
Confidence            4456778999999999999999999865432   235577765444

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.74  E-value=0.016  Score=62.14  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..|.-+++.|+||+|||++++.++...+.     ..+.+|+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~  271 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLING  271 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEc
Confidence            44666889999999999999999998743     4566644

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.73  E-value=0.021  Score=61.86  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+..+++.||||+||||+++.++..+..     ....|+.+.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~  144 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGV  144 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEeccc
Confidence            4667899999999999999999988743     4556655443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.67  E-value=0.017  Score=62.34  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~i  253 (516)
                      .+..+++.|++||||||+.+.|+.....   ..+.+.| +++++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~---~~giitied~~E~  299 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPP---DAKVVSIEDTREI  299 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEESSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCC---CCCEEEEcCcccc
Confidence            4556899999999999999999876632   2344555 34444

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.67  E-value=0.019  Score=54.05  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .|.+.+|.|+|||||||+..+|.--+
T Consensus        22 ~~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999987555

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.64  E-value=0.02  Score=58.83  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +..++++.|+|||||||++..++.....  .+..+.+++.+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~   99 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEH   99 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC
Confidence            4679999999999999999999865421  123578898875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.64  E-value=0.025  Score=57.65  Aligned_cols=29  Identities=21%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ......++.+.|+|||||||+.+.|...+
T Consensus        51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           51 QTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            34567899999999999999999998654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.57  E-value=0.017  Score=62.97  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ++...+.+.|+|||||||+.+.|+.-+.+   ..|.+.+|.-++++
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~  409 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLRE  409 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccc
Confidence            45678999999999999999999876532   23668887766654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.55  E-value=0.02  Score=57.34  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.|..+++.|++|+||||+++.++..+.
T Consensus        36 ~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           36 RIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3466889999999999999999998874

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.54  E-value=0.012  Score=59.35  Aligned_cols=56  Identities=9%  Similarity=-0.019  Sum_probs=42.5

Q ss_pred             cCCccccc---cccc--CCccccccccccchhhhhhh--hcccccccccccchhcccccccccCC-chhHHHHHHHHHhh
Q 010176           94 KGCEDNIY---EYFS--KEAEPESLYVKLVEEFDRCI--LSYFTFHWSHASLMISQVLSVESEKK-TKLKDFIMAATRKQ  165 (516)
Q Consensus        94 r~cHGDLh---~~~~--~~~~~fD~cIEF~~~l~R~i--l~d~AF~~~~~~~~~~l~MDle~~g~-~~la~~~l~~yl~~  165 (516)
                      .-||||+|   ++++  +.+.++| +    +.. .+.  +.|+|+          ++|+++..+. +..+..|+++|.+.
T Consensus       207 ~~~HgD~~~~N~l~~~~~~~~~iD-~----e~~-~~~~~~~Dla~----------~~~~~~~~~~~~~~~~~fl~~Y~~~  270 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEESIYIID-W----DEP-MLAPKERDLMF----------IGGGVGNVWNKPHEIQYFYEGYGEI  270 (339)
T ss_dssp             EEECSCCCGGGEEECGGGCEEECC-C----SSC-EEECTHHHHTT----------TTCCTTSCSCCHHHHHHHHHHHCCC
T ss_pred             eeEeCCCCcCCEEEeCCCeEEEEE-C----CCC-eeCCHHHHHHH----------HHhhhhhccCCHHHHHHHHHHhCCC
Confidence            56999999   5554  3577888 3    223 444  999999          9999877765 67888999999865

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.52  E-value=0.019  Score=53.96  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=22.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +...+++++|+||+||||++..++..
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            35679999999999999999987653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.51  E-value=0.042  Score=55.92  Aligned_cols=43  Identities=9%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~  252 (516)
                      +...++++.|+|||||||++..++...-.+    +.+.++++|+.+.
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            457899999999999999999998752110    0134678887655

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.50  E-value=0.017  Score=63.28  Aligned_cols=45  Identities=16%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      -++...+.+.|+|||||||+.+.|+.-+.+   ..|.+.+|.-++++.
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~  422 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKI  422 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhC
Confidence            455679999999999999999999876533   236688887776643

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.49  E-value=0.024  Score=54.80  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      .+..+++++|+|||||||++..++.+...  .+..+.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEE
Confidence            45689999999999999999998877632  22345555

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.48  E-value=0.018  Score=60.68  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.-+++.|+||+||||+++.++..+.........+++++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            556888999999999999999886621000124577776554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.46  E-value=0.011  Score=60.91  Aligned_cols=43  Identities=19%  Similarity=0.145  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-....++.+.|||||||||+.+.|+.-..+   ..|-+.++...+
T Consensus        27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i   69 (353)
T 1oxx_K           27 NIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLV   69 (353)
T ss_dssp             EECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence            4566788999999999999999999865432   235577765444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.41  E-value=0.02  Score=56.97  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.|+||+||||+++.++..+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999876

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.38  E-value=0.013  Score=63.97  Aligned_cols=45  Identities=18%  Similarity=0.197  Sum_probs=34.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      -++...+.+.|||||||||+.+.|..-+.+   ..|.+.+|.-+++..
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~  408 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDF  408 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhC
Confidence            355678999999999999999999876533   236688887776543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.31  E-value=0.029  Score=50.29  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .++.-|++.|++|+||||+...|...
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35567888999999999999999864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.31  E-value=0.022  Score=56.72  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      -+++.|+||+|||++++.++..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            377889999999999999999874

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.28  E-value=0.028  Score=57.98  Aligned_cols=40  Identities=13%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +..++++.|+|||||||++..++.....  .+..+.+|+.+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~  101 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEH  101 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            5679999999999999999999875421  123578898865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.26  E-value=0.029  Score=58.15  Aligned_cols=31  Identities=10%  Similarity=-0.013  Sum_probs=24.8

Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcccchhh
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS  404 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~  404 (516)
                      ..++|+||+++.++|.++|.+..|..-..+.
T Consensus       291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~ee  321 (359)
T 2ga8_A          291 LVYKIDIDYEATEERVAKRHLQSGLVTTIAE  321 (359)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTTSCSSHHH
T ss_pred             EEEEEECCHHHHHHHHHHhhhccCCCCCHHH
Confidence            4589999999999999999988787333333

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.24  E-value=0.022  Score=58.26  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...+.|.|+|||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            56788899999999999999998763

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.23  E-value=0.031  Score=59.29  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .-+++.|+||+||||+++.++..+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4578899999999999999999874

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.22  E-value=0.05  Score=55.11  Aligned_cols=27  Identities=33%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             CCCEEEEE--ecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLM--GGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli--~G~sGSGKSTlA~~La~~l  236 (516)
                      ..|..++|  .|++|+||||+++.++...
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            35778888  9999999999999998765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.21  E-value=0.032  Score=56.19  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~  252 (516)
                      ...++++.|+|||||||++..++...-..    +.+..+++|+.+.
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            46799999999999999999998754110    0123568887654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.20  E-value=0.012  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.|+||+|||++|+.+....
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTT
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            6789999999999999987654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.17  E-value=0.02  Score=62.58  Aligned_cols=44  Identities=23%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ++...+.+.|+|||||||+.+.|..-+.+   ..|.+.+|.-++++.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~  410 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTV  410 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGB
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccC
Confidence            45678999999999999999999876533   236688888777643

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=94.16  E-value=0.31  Score=52.51  Aligned_cols=167  Identities=16%  Similarity=0.021  Sum_probs=87.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ...|+||++-|.-||||+|..+.|.+.+..    .+..++-   +. .++.+   +.   +  .  |            +
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p----rg~~V~a---~~~Pt~~E---~~---~--~--y------------l   90 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDP----RLIEVQS---FLRPSDEE---LE---R--P--P------------Q   90 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCG----GGEEEEE---CSSCCHHH---HT---S--C--T------------T
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCc----cCCeEEE---eCCCChhh---cc---C--C--h------------h
Confidence            477999999999999999999999999853    2333330   11 11111   00   0  0  1            1


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccch-hhccccchhhhhhhhhccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYW-EQVKEGEEDYQQKENRQVF  366 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw-~~v~~a~~~~~~~~~~~~~  366 (516)
                      .......=..|.-+|+|-++-..    .+...   +      +  |.       ..+..| ..+..-      ...|+..
T Consensus        91 ~R~~~~lP~~G~IvIfdRSwYs~----~~v~r---v------~--g~-------~~~~~~~~~~~~i------~~FE~~L  142 (500)
T 3czp_A           91 WRFWRRLPPKGRTGIFFGNWYSQ----MLYAR---V------E--GH-------IKEAKLDQAIDAA------ERFERML  142 (500)
T ss_dssp             HHHHHHCCCTTCEEEEESCHHHH----HHHHH---H------T--TS-------SCHHHHHHHHHHH------HHHHHHH
T ss_pred             hhHHHhCCCCCeEEEEeCchhhH----HHHHH---H------h--cC-------CCHHHHHHHHHHH------HHHHHHH
Confidence            11223333589999999665322    11111   1      1  11       111111 111111      1122334


Q ss_pred             cCCCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc----eEEEEecC
Q 010176          367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD----NARLYCTN  432 (516)
Q Consensus       367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD----~~~lydnn  432 (516)
                      ...|+.+..++++.+++....|...|...-.+   --|.+. ....|..+......+....|    -|++.+.+
T Consensus       143 ~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~  216 (500)
T 3czp_A          143 CDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGA  216 (500)
T ss_dssp             HHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECS
T ss_pred             hcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECC
Confidence            56788888899999999999999998652222   122222 24556666676666666554    36666644

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.15  E-value=0.028  Score=56.96  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .|.+.+|.|+|||||||+..++.-.+
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999985544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.14  E-value=0.046  Score=50.83  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=21.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++..|++.|.+|+||||+...++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45566777999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.14  E-value=0.031  Score=60.12  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=29.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHH--HHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDI--MKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~L--a~~l~~~~~~~~av~IdaD~  252 (516)
                      ++..++++.|+|||||||+++.+  ..-...   ..+.++|+..+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~---~~g~i~v~g~~   78 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---DEPGVFVTFEE   78 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence            45789999999999999999994  332221   23568887655

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.11  E-value=0.038  Score=52.02  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=27.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      .+..++++.|+|||||||.+-.++.+...  .+..+.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~   42 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVF   42 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEE
Confidence            44689999999999999999998877632  23345555

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.11  E-value=0.028  Score=54.78  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=21.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .|. +++.|++|+||||+++.++..+
T Consensus        38 ~~~-~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           38 IPH-LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCC-EEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCe-EEEECcCCcCHHHHHHHHHHHh
Confidence            344 8899999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.08  E-value=0.029  Score=57.71  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.+.+|.|+|||||||+..+|.-.
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            448889999999999999998743

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.06  E-value=0.025  Score=59.15  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..-....++.+.|||||||||+.+.|+.-..    ..|.+.++..++...
T Consensus        42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~   87 (390)
T 3gd7_A           42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSI   87 (390)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcC
Confidence            3456778999999999999999999986432    236688887766543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.05  E-value=0.032  Score=54.59  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.|++|+||||+++.++..+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8899999999999999999876

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.04  E-value=0.025  Score=57.86  Aligned_cols=44  Identities=11%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc--c-cCC-CCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF--W-SGA-ATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~--~-~~~-~~~av~IdaD~i  253 (516)
                      +...++.|.|+|||||||++..++....  . .|. ++.+++|+....
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            4578999999999999999999987651  1 000 123488877543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.03  E-value=0.041  Score=54.14  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +++|.|++|+||||+++.+......     ..++++....
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~   66 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKF   66 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhh
Confidence            8899999999999999999987632     4578876543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.02  E-value=0.06  Score=53.77  Aligned_cols=51  Identities=22%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK  266 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~  266 (516)
                      .-+++.|+||+|||++|+.+......  .....+.+|+..+.. +.....+++.
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~--~~~~~v~v~~~~~~~-~l~~~~lfg~   76 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACSAR--SDRPLVTLNCAALNE-SLLESELFGH   76 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHSSC--SSSCCCEEECSSCCH-HHHHHHHTCC
T ss_pred             CcEEEECCCCchHHHHHHHHHHhCcc--cCCCeEEEeCCCCCh-HHHHHHhcCc
Confidence            34678999999999999999986521  122467888777643 3344556664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.00  E-value=0.029  Score=51.25  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...+++.|+|||||||+.+.+....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3568899999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.95  E-value=0.036  Score=48.83  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.-|++.|.+|+||||+...+....
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCc
Confidence            345567888999999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.95  E-value=0.03  Score=51.28  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-+++.|++||||||+.+.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            457889999999999999998753

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.92  E-value=0.033  Score=54.35  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .|. +++.|++|+||||+++.++..+
T Consensus        42 ~~~-~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           42 MPH-MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCe-EEEECcCCCCHHHHHHHHHHHh
Confidence            355 8899999999999999999875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.92  E-value=0.021  Score=52.30  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=23.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .......+++.|+|||||||+.+.|...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4456778999999999999999988643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.87  E-value=0.038  Score=49.02  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.-|++.|+||+||||+...+...
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            356888999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.87  E-value=0.019  Score=57.14  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=21.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~  237 (516)
                      +++.|+||+|||++++.++..+.
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88899999999999999998773

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=93.83  E-value=0.048  Score=55.40  Aligned_cols=43  Identities=26%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...+..+.+.|+||+||||+...|+..+..  .+....+++.|..
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~~d~~   95 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVDPS   95 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeecCC
Confidence            356778888999999999999999865421  1224566666654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=93.81  E-value=0.073  Score=55.72  Aligned_cols=42  Identities=12%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~  252 (516)
                      ...++.|.|+|||||||++..++-....+    +...+.++|+...
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            46789999999999999999876332110    0123578888765

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=93.72  E-value=0.06  Score=52.65  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=27.6

Q ss_pred             cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      |.+++..+..|.++.|+|||||||.+-.++....  +.+....++
T Consensus        11 p~~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~   53 (234)
T 2orv_A           11 PGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVI   53 (234)
T ss_dssp             -------CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEE
T ss_pred             CCCCCCCceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEE
Confidence            3444556789999999999999998888877653  223345555

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.65  E-value=0.037  Score=55.52  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~-~~~~~~~av~Ida  250 (516)
                      +.-+++.|+||+|||+++..++..+. ..  +..+.++++
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~  189 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF  189 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence            45678899999999999999988663 21  224556643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.65  E-value=0.035  Score=60.34  Aligned_cols=29  Identities=34%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.+..++.+.|+|||||||+.+.|+..+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34566899999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.64  E-value=0.042  Score=50.74  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.-|++.|++|+||||+...|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34557788999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.54  E-value=0.045  Score=55.92  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=22.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....|.+.|+|||||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36788999999999999999998754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.53  E-value=0.04  Score=55.38  Aligned_cols=40  Identities=10%  Similarity=0.043  Sum_probs=29.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ....+++++|+||+||||++..++.....  .+....+++..
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE  105 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE  105 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECC
Confidence            45679999999999999999999876522  12345677554

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.52  E-value=0.044  Score=56.70  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...+++|.|+||+||||++..++.....  .+..+.+|+.+.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~  112 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEH  112 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCC
Confidence            4678999999999999999999876421  123678898875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.47  E-value=0.047  Score=48.13  Aligned_cols=27  Identities=15%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|++|+||||+...+....
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            345568889999999999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.43  E-value=0.042  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5667999999999999998653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.40  E-value=0.05  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-|++.|.+|+||||+...+....
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            347888999999999999998654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.39  E-value=0.05  Score=47.29  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            4457888999999999999998654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.38  E-value=0.043  Score=56.23  Aligned_cols=34  Identities=9%  Similarity=0.136  Sum_probs=26.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..++++.|+||+||||++.+++...+     ..+.+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence            46788999999999999999987632     13456655

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.37  E-value=0.05  Score=48.00  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.-|++.|.+|+||||+...+....
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            345567788999999999999997643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.28  E-value=0.07  Score=51.94  Aligned_cols=40  Identities=10%  Similarity=0.238  Sum_probs=29.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-|+++|++|+||||++-.++..+--  .+....+++.|.-.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~--~G~~V~v~d~D~q~   46 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLR--QGVRVMAGVVETHG   46 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH--CCCCEEEEEeCCCC
Confidence            44899999999999999888876521  13356778887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.26  E-value=0.043  Score=54.86  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...++.+.|+|||||||+.+.|. ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            35688899999999999999999 55

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.21  E-value=0.061  Score=46.45  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            3458889999999999999998654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.20  E-value=0.055  Score=48.70  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.-|++.|++|+||||+...|....
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34567788999999999999998754

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=93.18  E-value=0.24  Score=53.42  Aligned_cols=160  Identities=11%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      ....|+||++-|.-||||+|..+.|.+.+..    .+..++-   +. .++.+.      .++    |.           
T Consensus       296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldp----rg~~V~~---~~~Pt~~E~------~~~----yl-----------  347 (500)
T 3czp_A          296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDP----RQYHIVP---IAAPTEEER------AQP----YL-----------  347 (500)
T ss_dssp             GGGCEEEEEEEESTTSCHHHHHHHHHTTSCG----GGCEEEE---CCSCCHHHH------TSC----TT-----------
T ss_pred             hCCCCEEEEEeccCCCCHHHHHHHHHHhcCc----cCCeEEE---eCCCChhhh------cch----HH-----------
Confidence            3468999999999999999999999998853    2333330   11 111110      010    11           


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh-hccccchhhhhhhhhcc
Q 010176          287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQV  365 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~-~v~~a~~~~~~~~~~~~  365 (516)
                       .......=..|.-+|+|-++-..--.+.+.               |+       ..+..|+ .+..-      ...|+.
T Consensus       348 -~R~~~~lP~~G~i~IfDRswY~~~~v~rv~---------------g~-------~~~~~~~~~~~~i------~~FE~~  398 (500)
T 3czp_A          348 -WRFWRHIPARRQFTIFDRSWYGRVLVERIE---------------GF-------CAPADWLRAYGEI------NDFEEQ  398 (500)
T ss_dssp             -HHHHTTCCCTTCEEEEESCGGGGGTHHHHH---------------TS-------SCHHHHHHHHHHH------HHHHHH
T ss_pred             -HHHHHhCCCCCeEEEEeCcchhhHHHHHHh---------------cC-------CCHHHHHHHHHHH------HHHHHH
Confidence             112222334799999998886553333221               11       1122222 11111      111222


Q ss_pred             ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc
Q 010176          366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD  424 (516)
Q Consensus       366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD  424 (516)
                      ....|+.+..+++..+++....|...|-..-..   --|.+. .+..|..+......+....|
T Consensus       399 L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~  461 (500)
T 3czp_A          399 LSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTS  461 (500)
T ss_dssp             HHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHC
T ss_pred             HhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            345688888899999999999999999753222   222222 24456666666666655444

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.18  E-value=0.038  Score=58.89  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...++.|.|+|||||||+.+.|+.-.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34567788999999999999998654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.17  E-value=0.068  Score=47.68  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|....
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence            345668889999999999999998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.16  E-value=0.048  Score=58.64  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=22.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .. .++.+.|+|||||||+.+.|+.-+
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            44 789999999999999999998755

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.15  E-value=0.07  Score=54.76  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      -++|.|+|||||||+++.++.....  .+...+++|++
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~   72 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPE   72 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESS
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3577899999999999999876522  13355677764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.09  E-value=0.067  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .++.-|++.|.+|+||||+...+...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            34556888999999999999999754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.08  E-value=0.051  Score=47.19  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+...+....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            347888999999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.07  E-value=0.066  Score=46.24  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            3457888999999999999998653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.07  E-value=0.054  Score=48.65  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=21.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...|....
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34568889999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.06  E-value=0.071  Score=52.40  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=27.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+++|.|++|+||||+++.++...       +.++++.+.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeec
Confidence            578899999999999999999876       247786543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=93.03  E-value=0.048  Score=54.46  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +...++++.|+|||||||++..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.03  E-value=0.047  Score=59.17  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....++.+.|+|||||||+.+.|+..+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            566789999999999999999998755

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.00  E-value=0.065  Score=54.51  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...-+++.|+||+||||++..|...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            4577999999999999999999875

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=92.99  E-value=0.097  Score=50.45  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=27.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      .+..|.++.|+|||||||.+-.++.....  .+..+.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~   62 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVF   62 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEE
Confidence            44689999999999999999998877632  23345555

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.98  E-value=0.069  Score=47.52  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...-|++.|.+|+||||+...+....
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34557889999999999999998653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=92.97  E-value=0.058  Score=54.35  Aligned_cols=31  Identities=16%  Similarity=0.226  Sum_probs=26.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ..+.|..+++.|++|+||||+++.+++.+..
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            3455778999999999999999999998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.96  E-value=0.074  Score=46.43  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.-|++.|.+|+||||+...+....
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            345668889999999999999997643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.94  E-value=0.055  Score=47.12  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3457888999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.92  E-value=0.047  Score=57.84  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             cCCCCEE--EEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVL--LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~L--Ili~G~sGSGKSTlA~~La~~  235 (516)
                      .-....+  +.+.|+|||||||+.+.|...
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            3455667  889999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.91  E-value=0.061  Score=48.22  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.-|++.|.||+||||+...|...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456888999999999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.90  E-value=0.042  Score=55.13  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      |-+.++.|+|||||||+..+|.-
T Consensus        24 ~g~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           24 DRVTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHH
Confidence            44899999999999999999973

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=92.87  E-value=0.076  Score=59.33  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             CCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+|. -+++.|+||+|||++++.++..++.     ..+.+|..++..
T Consensus       485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~-----~~~~i~~s~~~~  526 (758)
T 1r6b_X          485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYME  526 (758)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSS
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHHhcC-----CEEEEechhhcc
Confidence            3443 6889999999999999999998842     567787766643

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=92.81  E-value=0.059  Score=56.82  Aligned_cols=41  Identities=12%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ....+++++|+||+||||++..++...... .+..+.+++.+
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E  241 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE  241 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC
Confidence            456799999999999999999998765210 12245666544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.81  E-value=0.057  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHh
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .-|++.|.+|+||||+...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            44788899999999999999864

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=92.81  E-value=0.11  Score=52.88  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=34.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...+++++++|-.|+||||++..++..+.  ..+....+||.|-
T Consensus        13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~   54 (334)
T 3iqw_A           13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDP   54 (334)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCS
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCC
Confidence            44578899999999999999999988762  3345678999993

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.81  E-value=0.058  Score=47.52  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            3457888999999999999998653

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=92.81  E-value=0.23  Score=49.88  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=77.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..|+||++-|.-||||++..+.|.+.+.+    .++.++   .+. .++.++.      ++                .+.
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldP----Rg~~V~---a~~~Pt~eE~~------~~----------------ylw  123 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDP----QGVQLT---AFKAPTDEEKS------HD----------------FLW  123 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCG----GGEEEE---ECCSCCHHHHT------SC----------------TTH
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCc----CceEEE---ECCCCChhhhc------CC----------------HHH
Confidence            47999999999999999999999999853    233333   111 1211100      10                011


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh-hccccchhhhhhhhhcccc
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~-~v~~a~~~~~~~~~~~~~~  367 (516)
                      +-....=..|.-+|+|.++-..-.++.+.               |+       ..+..|+ .+.+-      ...|+...
T Consensus       124 R~~~~lP~~G~I~IFdRSwY~~vlverV~---------------g~-------~~~~~~~~~~~~I------~~FE~~L~  175 (289)
T 3rhf_A          124 RIEKQVPAAGMVGVFDRSQYEDVLIHRVH---------------GW-------ADAAELERRYAAI------NDFESRLT  175 (289)
T ss_dssp             HHHTTCCCTTCEEEEESCGGGGGTHHHHT---------------TS-------SCHHHHHHHHHHH------HHHHHHHH
T ss_pred             HHHHhCCCCCeEEEEeCchhhhHhHHHHh---------------cC-------CCHHHHHHHHHHH------HHHHHHHH
Confidence            12233345799999999887654443321               11       1112221 11110      12223345


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhh
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAI  394 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~  394 (516)
                      ..|+.|.=+++..+.+....|...|-.
T Consensus       176 ~~G~~ilKf~LhIskeEQ~kR~~~R~~  202 (289)
T 3rhf_A          176 EQGTTIVKVMLNISKDEQKKRLIARLD  202 (289)
T ss_dssp             HTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            678887779999999999999999875

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=92.78  E-value=0.079  Score=54.32  Aligned_cols=39  Identities=13%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      +++|.|+|||||||++-.++....-.+.+..+++||+..
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            789999999999999998876542100123578887755

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.77  E-value=0.06  Score=48.32  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.-|++.|.+|+||||+...|....
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence            34567888999999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.77  E-value=0.059  Score=46.92  Aligned_cols=24  Identities=29%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+...+....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            347888999999999999998543

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=92.74  E-value=0.095  Score=53.45  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ....+++++++|..|+||||++..|+..+-  ..+....+||.|-
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~   64 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLA--EKGLKVVIVSTDP   64 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHHHH--HSSCCEEEEECCT
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence            345678999999999999999999987652  2244678899987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.71  E-value=0.056  Score=55.90  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...++.+.|+|||||||+.+.|+...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            34688899999999999999998655

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=92.70  E-value=0.059  Score=55.21  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .|.+.+|.|+|||||||+..+|.=
T Consensus        24 ~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.68  E-value=0.056  Score=48.76  Aligned_cols=21  Identities=43%  Similarity=0.798  Sum_probs=18.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~  234 (516)
                      -|++.|+||+||||+.+.+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            377889999999999999975

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=92.66  E-value=0.072  Score=53.02  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...+++.||||+|||+++.+|+...
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3579999999999999999999865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.65  E-value=0.058  Score=48.33  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.-|++.|.+|+||||+...+....
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC
Confidence            345668889999999999999998543

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=92.65  E-value=0.057  Score=56.32  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..|.+++|.|+|||||||+..++.--+
T Consensus        24 ~~~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           24 GESNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            447889999999999999999997654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.60  E-value=0.08  Score=47.61  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .+.-|++.|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3455777899999999999999854

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=92.59  E-value=0.061  Score=53.78  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.++.|-.|.+.|.||+||||+...|...-
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356677889999999999999999998653

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=92.57  E-value=0.088  Score=52.96  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++++++++|..|+||||++..|+..+-  ..+....+||+|-
T Consensus        13 m~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~   52 (324)
T 3zq6_A           13 KTTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDP   52 (324)
T ss_dssp             BCEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCC
Confidence            368999999999999999999987662  2244678899997

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.57  E-value=0.065  Score=56.40  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..+.+.|+|||||||+.+.|..-.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            45678899999999999999998743

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=92.56  E-value=0.1  Score=58.47  Aligned_cols=44  Identities=16%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             CCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       210 ~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+|. -+++.||||+|||++|+.++..+..  .....+.+|..++..
T Consensus       518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          518 KRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYME  562 (758)
T ss_dssp             TSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhccc
Confidence            4454 5889999999999999999988732  123567887766643

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=92.56  E-value=0.094  Score=52.61  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=20.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...+++|+|.||   ||+|+.+.|.+..
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~  126 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEF  126 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhC
Confidence            346778888898   7999999999865

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.55  E-value=0.074  Score=54.09  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...-+++.|+||+||||+|..|...
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4678999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.55  E-value=0.053  Score=64.86  Aligned_cols=110  Identities=14%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHHHhcC-CCC---C----hhh-H-HHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRALSSK-GHH---D----DML-Q-TAE  277 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~L~~~-~~~---~----~~~-y-~~e  277 (516)
                      ++..++.+.|++||||||+++.|...+..   ..|.+.||.-+++.-+  .+|+.+.=. +.+   .    +.+ + .+.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~  518 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG  518 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence            34568999999999999999999987744   3467888876666543  234442211 000   0    000 0 000


Q ss_pred             HHHHHHHHHHH----HHHHHHHhCCCcEEEe--CCCCChHHHHHHHHHHHhh
Q 010176          278 LVHQSSTDAAS----SLLVTALNEGRDVIMD--GTLSWVPFVEQTIAMARNV  323 (516)
Q Consensus       278 ~v~~~~~~~a~----~la~~aL~~G~sVIvD--aTfs~~~~r~~~~~lAr~~  323 (516)
                      ...++..+++.    ..--..|..|.+..+.  ++.....++++ +++||.+
T Consensus       519 ~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl  569 (1321)
T 4f4c_A          519 ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR-IAIARAL  569 (1321)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH-HHHHHHH
Confidence            01112222111    1223456788877664  45566666666 5777765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.50  E-value=0.079  Score=47.67  Aligned_cols=27  Identities=11%  Similarity=0.139  Sum_probs=21.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.=|++.|.+|+||||+...+....
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCC
Confidence            345668889999999999999998643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.50  E-value=0.083  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+...+....
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            447888999999999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.46  E-value=0.056  Score=58.59  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....++.|.|+|||||||+.+.|+.-.
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998755

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.43  E-value=0.074  Score=50.42  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence            345667888999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.43  E-value=0.071  Score=46.51  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4457888999999999999998653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.43  E-value=0.079  Score=48.12  Aligned_cols=27  Identities=15%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|....
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence            345668889999999999999998654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.42  E-value=0.07  Score=46.61  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=18.1

Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~  234 (516)
                      |++.|.+|+||||+...+..
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67889999999999999964

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.42  E-value=0.085  Score=46.23  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.=|++.|.+|+||||+...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            345788899999999999999754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.41  E-value=0.074  Score=46.14  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCC
Confidence            4557889999999999999998643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.40  E-value=0.064  Score=53.48  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..++.+.|+|||||||+.+.|+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            4678889999999999999998654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.38  E-value=0.072  Score=46.76  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..-|++.|.+|+||||+...+....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4557888999999999999998654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.38  E-value=0.069  Score=58.91  Aligned_cols=28  Identities=36%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .....++.+.|+|||||||+.+.|+..+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            4567789999999999999999998755

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=92.38  E-value=0.068  Score=60.79  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ....+++|.|||||||||+.+.++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHH
Confidence            3457899999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.35  E-value=0.075  Score=47.24  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...+....
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34567889999999999999998643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.34  E-value=0.062  Score=47.70  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .++.-|++.|++|+||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567788899999999999998763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.32  E-value=0.065  Score=46.68  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.7

Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~  234 (516)
                      |++.|.+|+||||+...+..
T Consensus         5 i~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            67889999999999999863

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=92.31  E-value=0.099  Score=59.52  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             CCC-EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P-~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .+| .-+++.|+||+|||++|+.|+..+..  .....+.||..++...
T Consensus       585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~--~~~~~i~i~~~~~~~~  630 (854)
T 1qvr_A          585 NRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEK  630 (854)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHS--SGGGEEEECTTTCCSS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhccch
Confidence            344 47889999999999999999988732  1235678888776543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=92.30  E-value=0.08  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      |-+.++.|+|||||||+.+.+.-
T Consensus        26 ~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           26 EGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHH
Confidence            44899999999999999999874

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=92.26  E-value=0.044  Score=55.13  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=18.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..++.|+|.||   ||+|+.+.|.++.
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~  121 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEY  121 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhC
Confidence            44556677777   5999999999876

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.19  E-value=0.1  Score=47.59  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +.+.++++-.|+||||++..|+..+.-  .+....+||.|--.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~D~~~   42 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSR--SGYNIAVVDTDPQM   42 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTTC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEECCCCC
Confidence            456677788999999999999877632  23467889998543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.18  E-value=0.078  Score=46.84  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...+....
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34557888999999999999998653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.13  E-value=0.087  Score=45.74  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6788999999999999998654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.13  E-value=0.072  Score=58.71  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....++.|.|+|||||||+.+.|+.-+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998755

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=92.12  E-value=0.18  Score=50.52  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=29.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeCc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD  251 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~-~~~~~~~av~IdaD  251 (516)
                      +..+++.||+|+||||+++.++...+ +....++...++++
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~   58 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   58 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence            56889999999999999999987531 11123467778765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=92.11  E-value=0.032  Score=54.05  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .++.|.|||||||||+.+.|+.-+.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccc
Confidence            4567889999999999999987664

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=92.10  E-value=0.14  Score=51.72  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ...++++++|..|.||||++..|+..+.  ..+....+||+|--
T Consensus        17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA--~~G~rVllvD~D~~   58 (329)
T 2woo_A           17 TSLKWIFVGGKGGVGKTTTSCSLAIQMS--KVRSSVLLISTDPA   58 (329)
T ss_dssp             TTCCEEEEECSSSSSHHHHHHHHHHHHH--TSSSCEEEEECCTT
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence            4467889999999999999999987763  23446788999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.10  E-value=0.077  Score=46.57  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-|++.|.+|+||||+...+....
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3557888999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.10  E-value=0.057  Score=58.64  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..++.+.|+|||||||+.+.|+.-.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998755

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.09  E-value=0.094  Score=47.21  Aligned_cols=26  Identities=38%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..+.-|++.|.+|+||||+...+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45566888899999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.05  E-value=0.096  Score=46.28  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...|....
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC
Confidence            34557888999999999999998653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.04  E-value=0.062  Score=64.11  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      -+....+.+.|+|||||||+.+.|...+.+   ..|.+.+|..+++..
T Consensus       413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~  457 (1284)
T 3g5u_A          413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTI  457 (1284)
T ss_dssp             ECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhC
Confidence            345678999999999999999999876633   336788887776643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.01  E-value=0.13  Score=58.49  Aligned_cols=29  Identities=28%  Similarity=0.263  Sum_probs=25.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ..|.=+++.||||+|||.+|++++.+.+.
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~  537 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQA  537 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence            45667899999999999999999999843

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.00  E-value=0.079  Score=47.13  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4557888999999999999998654

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=91.97  E-value=0.1  Score=49.65  Aligned_cols=41  Identities=24%  Similarity=0.206  Sum_probs=24.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ...+.+|.++.|+|||||||..-........  .+....++.+
T Consensus        16 ~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp   56 (195)
T 1w4r_A           16 SKTRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKY   56 (195)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEcc
Confidence            3456789999999999999654444443322  1235566644

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.95  E-value=0.059  Score=58.05  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.|+||+|||++|+.++..+
T Consensus        44 VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           44 VFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             EEEECCSSSSHHHHHHHGGGGB
T ss_pred             eEeecCchHHHHHHHHHHHHHH
Confidence            6778999999999999999877

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.94  E-value=0.091  Score=47.44  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.-|++.|.+|+||||+...+....
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCC
Confidence            34567889999999999999998653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.93  E-value=0.085  Score=46.39  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.=|++.|.+|+||||+...|...
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            455788999999999999998643

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=91.90  E-value=0.19  Score=47.15  Aligned_cols=40  Identities=13%  Similarity=0.097  Sum_probs=31.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~i  253 (516)
                      ..+.++++-.|+||||++-.|+..+.  .. +....+||.|.-
T Consensus         5 ~vI~v~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            5 RVFGFVSAKGGDGGSCIAANFAFALS--QEPDIHVLAVDISLP   45 (245)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHT--TSTTCCEEEEECCTT
T ss_pred             eEEEEECCCCCcchHHHHHHHHHHHH--hCcCCCEEEEECCCC
Confidence            45667778899999999999998773  22 456789999865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=91.90  E-value=0.076  Score=58.10  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..+++.|+||+||||+++.|+..+.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            3578899999999999999998774

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.90  E-value=0.11  Score=47.00  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            4457888999999999999998653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.89  E-value=0.09  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...|....
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3457889999999999999998654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.88  E-value=0.095  Score=50.20  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|....
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            445678888999999999999998643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.87  E-value=0.09  Score=46.40  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.-|++.|.+|+||||+...+....
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34567889999999999999998654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.86  E-value=0.083  Score=56.00  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -+++.|+||+||||+++.++..+
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            35788999999999999999886

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.86  E-value=0.092  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.383  Sum_probs=19.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -|++.|.+|+||||+...+....
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            45667999999999999998653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.86  E-value=0.079  Score=47.18  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            5678999999999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.85  E-value=0.07  Score=58.80  Aligned_cols=27  Identities=22%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....++.+.|+|||||||+.+.|+..+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            456789999999999999999998755

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=91.83  E-value=0.034  Score=57.20  Aligned_cols=28  Identities=21%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..... ++++.|+|||||||+.+.|.--+
T Consensus        57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           57 ELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             ECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            34445 99999999999999999985433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.76  E-value=0.12  Score=46.89  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+..=|++.|.+|+||||+...+....
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567889999999999999988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.74  E-value=0.13  Score=46.33  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|....
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCC
Confidence            344567888999999999999998643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.73  E-value=0.093  Score=47.27  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...|....
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4567889999999999999998754

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=91.70  E-value=0.14  Score=55.69  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...+++++++|.+|.||||++-.|+..+-  ..+....+||.|-
T Consensus         5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA--~~G~rVLlvd~D~   46 (589)
T 1ihu_A            5 QNIPPYLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDP   46 (589)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCT
T ss_pred             CCCCEEEEEeCCCcCHHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence            35578899999999999999999987662  2244678899994

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.69  E-value=0.11  Score=47.06  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....=|++.|.+|+||||+...+....
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            345668899999999999999998654

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=91.69  E-value=0.14  Score=51.13  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             CCEEEEEec-CCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G-~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+++|+++| -+|.||||++..|+..+..  .+..+.+||+|.-+.
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID~D~r~~  146 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQ--SDQKVLFIDADLRRG  146 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHH--TTCCEEEEECCTTTC
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHh--CCCcEEEEECCCCCc
Confidence            445555555 5899999999999876632  234678999997543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=91.68  E-value=0.095  Score=55.05  Aligned_cols=41  Identities=10%  Similarity=0.110  Sum_probs=29.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ....+++++|+||+||||++..++..... ..+..+.+++..
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE  238 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE  238 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC
Confidence            34679999999999999999999876521 112346777554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=91.67  E-value=0.091  Score=60.76  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDI  232 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~L  232 (516)
                      ...+++|.|||||||||+.+.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4579999999999999999998

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.65  E-value=0.11  Score=45.87  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.=|++.|.+|+||||+...+....
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            344557788999999999999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.65  E-value=0.085  Score=58.16  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.+.|+|||||||+.+.|+.-+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC
Confidence            568999999999999999998755

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.62  E-value=0.1  Score=46.18  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            3457889999999999999998643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.61  E-value=0.1  Score=46.91  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...+....
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567888999999999999987543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.60  E-value=0.086  Score=56.60  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .+..++++.|+|||||||+++.++.....  .+...+++...
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~e  318 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYE  318 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence            35678999999999999999999876532  12234556443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.55  E-value=0.085  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-|++.|.+|+||||+...+....
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            4557888999999999999998543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=91.53  E-value=0.1  Score=53.49  Aligned_cols=40  Identities=13%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ....|++++|.||+||||++..++.....  .+..+.+++.+
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE   83 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE   83 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC
Confidence            44579999999999999999999876421  12345666554

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=91.41  E-value=0.074  Score=61.40  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La  233 (516)
                      ....+++|.|||||||||+.+.++
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHH
Confidence            446799999999999999999875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=91.39  E-value=0.091  Score=59.48  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..+++|.|||||||||+.+.++.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            46899999999999999999875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.38  E-value=0.13  Score=46.90  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...+....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            445678889999999999999998654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.34  E-value=0.13  Score=45.93  Aligned_cols=26  Identities=42%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .++.-|++.|.+|+||||+...+...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45667888999999999999998743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.32  E-value=0.12  Score=46.37  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...+....
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34557888999999999999998754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=91.28  E-value=0.083  Score=52.77  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=18.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHHh
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~  235 (516)
                      =|++.|+||+||||+.+.|...
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3588899999999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.21  E-value=0.1  Score=47.05  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++.-|++.|.+|+||||+...+....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            345567888999999999999987543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.14  E-value=0.12  Score=46.55  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...|....
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            3567888999999999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.13  E-value=0.13  Score=46.35  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4457889999999999999998654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=91.12  E-value=0.11  Score=56.82  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..++++.|+||+||||++..++..+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578889999999999999998755

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.11  E-value=0.12  Score=46.23  Aligned_cols=25  Identities=28%  Similarity=0.504  Sum_probs=21.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-|++.|.+|+||||+...|....
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568889999999999999998654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.07  E-value=0.15  Score=46.19  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...+....
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            45568888999999999999998653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.06  E-value=0.13  Score=45.95  Aligned_cols=25  Identities=28%  Similarity=0.181  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..=|++.|.+|+||||+.+.+....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3457888999999999998776554

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.05  E-value=0.12  Score=54.69  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      .+..+++++|.||+||||++..++.....  .+..+.+++...
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEm  235 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEM  235 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCC
Confidence            45679999999999999999999876522  123566775543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=91.02  E-value=0.094  Score=60.91  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .-.+..++.+.|+|||||||+.+.|+.
T Consensus       457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          457 RLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            445678899999999999999999984

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=90.98  E-value=0.19  Score=48.26  Aligned_cols=41  Identities=15%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+++.+++|-.|+||||++-.|+..+.   .+....+||.|--.
T Consensus        27 ~~vI~v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~   67 (267)
T 3k9g_A           27 PKIITIASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQA   67 (267)
T ss_dssp             CEEEEECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTC
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCC
Confidence            345556688899999999999998773   24567889998643

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=90.96  E-value=0.12  Score=54.44  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+++.|++||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78889999999999999998776

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.96  E-value=0.12  Score=46.87  Aligned_cols=25  Identities=32%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-|++.|.+|+||||+...+....
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~   47 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDR   47 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4457888999999999999998643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.96  E-value=0.11  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=19.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La  233 (516)
                      ...-|++.|.+|+||||+...+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34567889999999999999985

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.94  E-value=0.12  Score=46.89  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+...|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            447888999999999999998654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.89  E-value=0.15  Score=45.65  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .++.-|++.|.+|+||||+...+...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            44566888899999999999999854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.87  E-value=0.13  Score=46.45  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+...+....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            457888999999999999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=90.86  E-value=0.11  Score=61.91  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=33.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ++...+.+.|+|||||||+.+.|..-..+   ..|.+.+|.-+++..
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccC
Confidence            45678999999999999999999875532   236688887777643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.85  E-value=0.14  Score=46.61  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=21.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.=|++.|.+|+||||+...|....
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            44567889999999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=90.84  E-value=0.14  Score=52.80  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La  233 (516)
                      +++.=|++-|.+||||||+++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            456667888999999999999984

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.81  E-value=0.13  Score=52.80  Aligned_cols=28  Identities=29%  Similarity=0.211  Sum_probs=23.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+...+.+.|+|||||||+.+.|+....
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4566788899999999999999998763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.80  E-value=0.12  Score=46.77  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...+....
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4557888999999999999998654

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=90.79  E-value=0.23  Score=50.97  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      ...++++++.|-.|+||||++..|+..+.....+....+||+|
T Consensus        15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A           15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            3446899999999999999999998765200234567889999

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.76  E-value=0.14  Score=47.07  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.-|++.|.+|+||||+...+....
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4457778999999999999998754

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=90.69  E-value=0.23  Score=47.92  Aligned_cols=42  Identities=24%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...+.+++|-.|+||||++-.|+..+..  .+....+||.|.-.
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~--~G~~VlliD~D~~~   59 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYAR--QGKKVGILDADFLG   59 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHH--TTCCEEEEECCSSC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence            4466677889999999999999877632  23467889998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=90.69  E-value=0.051  Score=55.00  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +..++.+.|+|||||||+.+.|....
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            35688999999999999999987544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.67  E-value=0.1  Score=62.36  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=37.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRA  262 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~  262 (516)
                      +....+.++|++||||||+++.|..-+.+   ..|.+.||.-++++-+  .+|+.
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCHHHHHTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCHHHHHhh
Confidence            34557889999999999999999865533   3477999887777543  34444

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.64  E-value=0.13  Score=46.96  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.=|++.|.+|+||||+...|....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4557888999999999999998654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=90.64  E-value=0.17  Score=53.87  Aligned_cols=42  Identities=12%  Similarity=0.089  Sum_probs=31.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ....+++|+|+||+||||++..++..... ..+..+.+++.+.
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~  281 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEE  281 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSS
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccC
Confidence            45679999999999999999999876521 1123567776644

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.62  E-value=0.14  Score=46.85  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      +.-|++.|++|+||||+...+..
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            44578889999999999999864

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=90.58  E-value=0.3  Score=48.51  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..++.++++-+|.||||++..|+..+.  ..+....+||+|.-+.
T Consensus        92 ~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~~~~  134 (286)
T 3la6_A           92 NNVLMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLIDCDMRKG  134 (286)
T ss_dssp             CCEEEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEECCTTTC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeccCCCC
Confidence            345667777899999999999988763  2345788999998654

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=90.55  E-value=0.24  Score=50.75  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=33.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...++++++|-.|.||||++-.|+-.+.....+....+||+|-
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~   58 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP   58 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            3467899999999999999999987662002345678999997

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=90.53  E-value=0.1  Score=57.44  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      |. +.+.|+|||||||+.+.|+.-.
T Consensus        46 p~-iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PA-IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred             Ce-EEEECCCCChHHHHHHHHhCCC
Confidence            44 7889999999999999998654

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=90.50  E-value=0.23  Score=46.48  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ..+.++++-.|+||||++..|+..+..  .+....+||.|.-
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD~D~~   42 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGD--RGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHh--cCCeEEEEeCCCC
Confidence            356677888999999999999877632  2346788999874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.43  E-value=0.16  Score=49.22  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-|++.|+||+||||+...|....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            457888999999999999998643

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=90.41  E-value=0.16  Score=47.41  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |.+.|-.|+||||++..|+..+.  ..+....+||.|-
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~   38 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence            33489999999999999998773  2345678899987

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.41  E-value=0.16  Score=54.43  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..+.+++|.|++|.||||++..+..
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            4578999999999999999999863

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.40  E-value=0.15  Score=46.04  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .+.=|++.|.+|+||||+...+....
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            34568889999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	516
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	5e-05

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 266
            +  SP   L+GG  G+GK+++   I +E+  +      +V++ D FK+    +  L   
Sbjct: 27  KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV-----IVIDNDTFKQQHPNFDELVKL 81

Query: 267 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKS 326
              D      + V   S     +++    ++G +++++GT        QT  M +     
Sbjct: 82  YEKD----VVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYE 137

Query: 327 RY 328
             
Sbjct: 138 TK 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	516
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.7
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.41
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.39
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.29
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.27
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.12
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.94
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.92
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.77
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.74
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.7
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.67
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.67
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.65
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.64
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.53
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.5
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.4
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.38
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.36
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.36
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.35
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.31
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.31
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.3
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.3
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.23
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.17
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.14
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.14
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.92
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.87
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.86
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.82
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.72
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.65
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.65
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.63
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.52
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.35
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.34
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.27
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.27
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.17
d1okkd2	207	GTPase domain of the signal recognition particle r	97.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.13
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.11
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.03
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.9
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.89
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.83
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.77
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.73
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.72
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.65
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.59
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.49
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.47
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.47
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.29
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.26
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.25
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.25
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.19
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.17
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.14
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.13
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.11
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.99
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.98
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.95
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.92
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.86
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.84
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.84
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.84
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.68
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.62
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.61
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.58
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.57
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.57
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.55
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.55
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.4
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.33
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.31
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.3
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.27
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.14
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.13
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.09
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.07
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.05
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.01
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.92
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.81
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.76
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.7
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.54
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.49
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.43
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.41
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.4
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.3
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.28
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.28
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.2
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.16
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.1
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.05
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.96
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.86
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.76
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.72
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.65
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.45
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.06
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.05
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.69
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.52
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.45
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.43
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.33
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.29
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.07
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.07
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.91
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.85
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.79
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.76
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.62
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.51
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.46
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.43
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.3
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.3
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.23
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.21
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.17
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.13
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.08
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.01
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.01
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	90.99
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.89
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	90.84
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	90.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.79
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.53
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.5
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.37
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.34
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	90.32
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.28
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.28
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.2
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.07
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.06
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.05
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.98
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.96
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.9
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.83
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.79
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	89.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	89.59
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.56
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	89.55
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.5
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	89.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.41
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.27
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.04
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	88.94
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	88.86
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.51
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	88.36
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.29
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.27
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.05
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.03
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	88.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.85
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.53
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.21
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	86.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	86.68
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.36
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.35
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.01
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.31
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	84.87
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.6
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.52
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	83.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.53
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	83.28
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.89
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	81.77
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.38
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.19
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.21
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.18

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.6e-17  Score=148.71  Aligned_cols=125  Identities=22%  Similarity=0.211  Sum_probs=97.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ..+.|.||+|+|+|||||||+++.++...       ++++|+.|+++..                        ..    +
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~-------~~~~i~~D~~~~~------------------------~~----~   54 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA-------GYVHVNRDTLGSW------------------------QR----C   54 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGG-------TCEEEEHHHHCSH------------------------HH----H
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc-------CCEEEchHHHHHH------------------------HH----H
Confidence            44679999999999999999999998887       4589977766432                        01    1


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ...+..+|.+|.+||+|+|+...+.|..++++|++.                                            
T Consensus        55 ~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~--------------------------------------------   90 (172)
T d1yj5a2          55 VSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDA--------------------------------------------   90 (172)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhc--------------------------------------------
Confidence            236677889999999999999999999998887653                                            


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCc--ccchhhhHhHHHHHH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKR--AVRVNSQLKSHKRFA  413 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr--~Vp~~~ql~s~~rf~  413 (516)
                        ||.+.++++.+|.+++..|...|...+..  .||...+...+++|.
T Consensus        91 --~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe  136 (172)
T d1yj5a2          91 --GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFE  136 (172)
T ss_dssp             --TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCC
T ss_pred             --CCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCC
Confidence              46688899999999999999999875433  566655555444443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.69  E-value=3.3e-16  Score=137.66  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=100.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL  290 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l  290 (516)
                      ++.+|+|+|+|||||||+++.|.++..      +..+++      .|.+++.+..........+.... ...........
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~------~~~~~~------~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   67 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP------GFYNIN------RDDYRQSIMAHEERDEYKYTKKK-EGIVTGMQFDT   67 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST------TEEEEC------HHHHHHHHTTSCCGGGCCCCHHH-HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC------CCEEec------hHHHHHHHhcccchhhhhhhhhh-hHHHHHHHHHH
Confidence            367899999999999999999987652      678994      44455555443111000000011 12222333456


Q ss_pred             HHHHHhCC---CcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          291 LVTALNEG---RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       291 a~~aL~~G---~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      +..++..|   ..+|+|+|+..+..+..+.++++..                                            
T Consensus        68 ~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~--------------------------------------------  103 (152)
T d1ly1a_          68 AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEY--------------------------------------------  103 (152)
T ss_dssp             HHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHhhccCCCcccccccCCHHHHHHHHHhhhhh--------------------------------------------
Confidence            66667665   4699999999999888887776442                                            


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF  416 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~  416 (516)
                        ||.+.+|++++|++++.+|...|   +.|.+|.+.+.++|+++.+.+
T Consensus       104 --~~~~~~i~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~  147 (152)
T d1ly1a_         104 --GWKVEHKVFDVPWTELVKRNSKR---GTKAVPIDVLRSMYKSMREYL  147 (152)
T ss_dssp             --TCEEEEEECCCCHHHHHHHHTTC---GGGCCCHHHHHHHHHHHHHHH
T ss_pred             --ccchhhhhcCCCHHHHHHHHHcc---CCCCCCHHHHHHHHHHHHhhc
Confidence              56688899999999999999888   467899999988888776543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.41  E-value=2.7e-12  Score=121.96  Aligned_cols=170  Identities=21%  Similarity=0.295  Sum_probs=119.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ....|+.|++.|||||||||+|+.|+.+++.     +.+.||+|+|+.....+..+...    ........+........
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   98 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDNDTFKQQHPNFDELVKL----YEKDVVKHVTPYSNRMT   98 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECTHHHHTTSTTHHHHHHH----HGGGCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEecHHHHHHhccCcccchh----hhHHHHHHHHhhccchH
Confidence            5678999999999999999999999999853     78999999987654333332221    00111223334444445


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ......++..+.+.++|.|+........+...+                                              .
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~  132 (273)
T d1gvnb_          99 EAIISRLSDQGYNLVIEGTGRTTDVPIQTATML----------------------------------------------Q  132 (273)
T ss_dssp             HHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHH----------------------------------------------H
T ss_pred             HHHHHHHHhhCCCCcccccccchHHHHHHHHHH----------------------------------------------H
Confidence            667788889999999999998876555443332                                              4


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhh-------hcCcccchhhhHhHHHHHHHhHHHhh--ccCceEEEEecC
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAI-------MMKRAVRVNSQLKSHKRFANAFRNYC--ELVDNARLYCTN  432 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~-------~gGr~Vp~~~ql~s~~rf~~~~~~y~--~lvD~~~lydnn  432 (516)
                      ..||.+.+.+++++.++.+.|...|..       ..+|.++.......+..+..++...+  ..+|.+.+|+..
T Consensus       133 ~~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~~~~~  206 (273)
T d1gvnb_         133 AKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE  206 (273)
T ss_dssp             TTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTT
T ss_pred             HcCCeEEEEecCCCchhhhhHHhcCCcccccccccccchhhHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHhhh
Confidence            457889988999999999999998853       24666776666666666666665443  457888888743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.39  E-value=3.2e-12  Score=112.28  Aligned_cols=122  Identities=18%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL  291 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la  291 (516)
                      ..+|+|+|+|||||||+|+.|++.++      ...+++.|.++.      .+.+...  ......+. .......+....
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~------~~~~~~~d~~~~------~~~~~~~--~~~~~~~~-~~~~~~~~~~~~   66 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLD------NSAYIEGDIINH------MVVGGYR--PPWESDEL-LALTWKNITDLT   66 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS------SEEEEEHHHHHT------TCCTTCC--CGGGCHHH-HHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC------CCEEEehHHHHH------HHhcccc--chhHHHHH-HHHHHHHHHHHH
Confidence            57899999999999999999999984      357786655543      2322111  11111111 333344455678


Q ss_pred             HHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCc
Q 010176          292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY  371 (516)
Q Consensus       292 ~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy  371 (516)
                      ...+..+.++|+|+++.....+.......                                             ....++
T Consensus        67 ~~~~~~~~~~iid~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~  101 (176)
T d2bdta1          67 VNFLLAQNDVVLDYIAFPDEAEALAQTVQ---------------------------------------------AKVDDV  101 (176)
T ss_dssp             HHHHHTTCEEEEESCCCHHHHHHHHHHHH---------------------------------------------HHCSSE
T ss_pred             HHHHhcCCCcccccccccHHHHHHHHHHH---------------------------------------------HhcCCC
Confidence            88899999999999987655443321111                                             123456


Q ss_pred             eEEEEEEecCHHHHHHHHHHhh
Q 010176          372 RIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       372 ~I~li~V~~d~elav~R~~~R~  393 (516)
                      .+.++++.||+++++.|...|.
T Consensus       102 ~~~~i~l~~~~~~~~~R~~~R~  123 (176)
T d2bdta1         102 EIRFIILWTNREELLRRDALRK  123 (176)
T ss_dssp             EEEEEEEECCHHHHHHHTTTSC
T ss_pred             ceEEEeccccHHHHHHHHHhCC
Confidence            6778899999999998887774

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=7.9e-12  Score=110.82  Aligned_cols=132  Identities=11%  Similarity=0.103  Sum_probs=89.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ....|.++++.|+|||||||+++.|++.++       ..+++.|.+.+.....+...+.. ...     +. .......+
T Consensus         2 ~~~~~~iivl~G~~GsGKsT~a~~La~~l~-------~~~~~~d~~~~~~~~~~~~~~~~-~~~-----~~-~~~~~~~~   67 (171)
T d1knqa_           2 TNHDHHIYVLMGVSGSGKSAVASEVAHQLH-------AAFLDGDFLHPRRNIEKMASGEP-LND-----DD-RKPWLQAL   67 (171)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHT-------CEEEEGGGGCCHHHHHHHHTTCC-CCH-----HH-HHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeechhhhhHHHHhhhhccCcc-eeh-----hh-hHHHHHHH
Confidence            346789999999999999999999999994       48899998865432222222211 111     11 22233334


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ...+...+..+..++++..+.....+..+                                                  +
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~   97 (171)
T d1knqa_          68 NDAAFAMQRTNKVSLIVCSALKKHYRDLL--------------------------------------------------R   97 (171)
T ss_dssp             HHHHHHHHHHCSEEEEECCCCSHHHHHHH--------------------------------------------------H
T ss_pred             HHHHHHHHhccCceEeeccchHHHHHHHH--------------------------------------------------H
Confidence            45677788889999999887765544321                                                  1


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhH
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQL  406 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql  406 (516)
                      ..++.+.+++++||++++.+|...|.   +|..+.+.+.
T Consensus        98 ~~~~~~~~v~l~~~~e~~~~Rl~~R~---~~~~~~~~~~  133 (171)
T d1knqa_          98 EGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLV  133 (171)
T ss_dssp             TTCTTEEEEEEECCHHHHHHHHHTST---TCCCCHHHHH
T ss_pred             HhCCCceEEeecCCHHHHHHHHHhCc---CCCccHHHHH
Confidence            22344677899999999999999884   6666655543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=4e-12  Score=112.84  Aligned_cols=122  Identities=19%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      ..+++|++.|+|||||||+++.|++++++     ..+.++.|.++.      .+.............+. ....+.....
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~d~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~   69 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDLWG------YIKHGRIDPWLPQSHQQ-NRMIMQIAAD   69 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECTTHHHH------TCCSSCCCTTSSSHHHH-HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecHHHHHH------HHhcCCcccccchhhhH-HHHHHHHHHH
Confidence            35789999999999999999999999864     567786666543      23322111100011111 2333444455


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK  369 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~  369 (516)
                      .+...+..+.+||+|+++... ++..                                                  ....
T Consensus        70 ~~~~~~~~~~~vi~~~~~~~~-~~~~--------------------------------------------------~~~~   98 (176)
T d1zp6a1          70 VAGRYAKEGYFVILDGVVRPD-WLPA--------------------------------------------------FTAL   98 (176)
T ss_dssp             HHHHHHHTSCEEEECSCCCTT-TTHH--------------------------------------------------HHTT
T ss_pred             HHHHHHhcCCCeEecccccHH-HHHH--------------------------------------------------HHhc
Confidence            777788899999999887532 1111                                                  1223


Q ss_pred             CceEEEEEEecCHHHHHHHHHHhhh
Q 010176          370 PYRIELVGVVCDAYLAVVRGIRRAI  394 (516)
Q Consensus       370 gy~I~li~V~~d~elav~R~~~R~~  394 (516)
                      +..+.+++++|+++.+.+|+..|..
T Consensus        99 ~~~~~~i~l~~~~e~~~~R~~~R~~  123 (176)
T d1zp6a1          99 ARPLHYIVLRTTAAEAIERCLDRGG  123 (176)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             ccccccccCCCCHHHHHHHHHhCCC
Confidence            4456778999999999999988863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.29  E-value=8.1e-11  Score=107.52  Aligned_cols=165  Identities=16%  Similarity=0.189  Sum_probs=95.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhH-H---HHHH-HHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ-T---AELV-HQS  282 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y-~---~e~v-~~~  282 (516)
                      +..+|.+|++.|||||||||+++.|++.++       .++|+++++     +++.+........... .   .... ...
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g-------~~~i~~g~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAGDL-----LRQEQQSGSKDGEMIATMIKNGEIVPSIV   69 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHHHH-----HHHHHHTTCTTHHHHHHHHHTTCCCCHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEchhhH-----HHHHhhhhhhhhhhhhhHhhhccccchHH
Confidence            567899999999999999999999999995       489966443     2222222110000000 0   0000 000


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhh
Q 010176          283 STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKEN  362 (516)
Q Consensus       283 ~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~  362 (516)
                      ....+.....  ......+|+|+...+......+.+...                                         
T Consensus        70 ~~~~~~~~~~--~~~~~~~i~dg~p~~~~~~~~l~~~~~-----------------------------------------  106 (194)
T d1qf9a_          70 TVKLLKNAID--ANQGKNFLVDGFPRNEENNNSWEENMK-----------------------------------------  106 (194)
T ss_dssp             HHHHHHHHHH--TSTTCCEEEETCCCSHHHHHHHHHHHT-----------------------------------------
T ss_pred             HHHHHHHHhh--hhhcCCeEEEecchhhhhHHHHHhhhh-----------------------------------------
Confidence            1111111111  123467999998887665544432211                                         


Q ss_pred             hccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhHH---HhhccCceEEEEecC
Q 010176          363 RQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFR---NYCELVDNARLYCTN  432 (516)
Q Consensus       363 ~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~~---~y~~lvD~~~lydnn  432 (516)
                           ..+.--.+|+++||+++.+.|...|....++... .+.+.++++.|.....   .|-+-.+.+.+.|.|
T Consensus       107 -----~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~  175 (194)
T d1qf9a_         107 -----DFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPAN  175 (194)
T ss_dssp             -----TTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECS
T ss_pred             -----hcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence                 1111233578899999999999999877666544 5556666555555443   344556677788854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=4.1e-10  Score=102.61  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-----ChhhHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQSSTD  285 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-----~~~~y~~e~v~~~~~~  285 (516)
                      .|+||+|+|+|||||||+|++|++.+.+.  ..+..++      +.|..|+.+.+....     +...+......+....
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~~--~~~~~~~------~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREF------NVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALA   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE------EHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCCCeEE------cccceehhhccccccccccccccccchhhHHHHHHH
Confidence            39999999999999999999999988652  2356778      445555556553211     1111111121222222


Q ss_pred             HHHHHHHHHH-hCCCcEEEeCCCCChHHHHHHHHHHHh
Q 010176          286 AASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARN  322 (516)
Q Consensus       286 ~a~~la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lAr~  322 (516)
                      .+...+..+. ..|..||+|+++.....|..+..+++.
T Consensus        73 ~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~  110 (213)
T d1bifa1          73 ALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ  110 (213)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHh
Confidence            2333333333 346789999999999999998877654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.22  E-value=3.5e-11  Score=106.13  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-----CC----CChhhHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-----GH----HDDMLQTAELVHQ  281 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-----~~----~~~~~y~~e~v~~  281 (516)
                      .+++|+|+|+|||||||+|+.|++.++.     ....++.|.+.      ..+...     ..    .....+.... ..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~-----~~~~~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   69 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLI------EAMPLKMQSAEGGIEFDADGGVSIGPE-FR   69 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHH------HHSCGGGGTSTTSEEECTTSCEEECHH-HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC-----CeEEeecchhh------ccccccccchhHHhhhhcccchhHHHH-HH
Confidence            4679999999999999999999999854     45667555443      222111     00    0001111111 22


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176          282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE  361 (516)
Q Consensus       282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~  361 (516)
                      ..+..+...+......+.++|++.++..+.......                             |.             
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------------~~-------------  107 (178)
T d1qhxa_          70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERW-----------------------------RS-------------  107 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHH-----------------------------HH-------------
T ss_pred             HHHHHHHHHHHHHHhhccceEEeeeecchHHHHHHH-----------------------------HH-------------
Confidence            233444456777888999999999998764322211                             10             


Q ss_pred             hhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176          362 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA  393 (516)
Q Consensus       362 ~~~~~~~~gy~I~li~V~~d~elav~R~~~R~  393 (516)
                           ...++.+.+|+|.||++++.+|...|.
T Consensus       108 -----~~~~~~~~~v~l~~~~e~~~~R~~~R~  134 (178)
T d1qhxa_         108 -----FVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             -----HHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             -----hhcCCceeecccCCCHHHHHHHHHhcC
Confidence                 112456778999999999999988773

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.12  E-value=1.9e-10  Score=108.26  Aligned_cols=132  Identities=10%  Similarity=0.014  Sum_probs=91.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA  287 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a  287 (516)
                      ...+|.+|+++|+|||||||+|+.|.+.+... ....++++|.|.++..      +...     ..|+.+. ....+..+
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~iR~~------l~~~-----l~ys~~~-r~~~~~r~   86 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIRFG------LNKD-----LGFSEAD-RNENIRRI   86 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHTTT------TTTT-----CCSSHHH-HHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCceEEEEcchHHHHh------hcCC-----CCCChhH-HHHHHHHH
Confidence            45789999999999999999999998765210 0226789977777653      4321     1122222 34455556


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176          288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS  367 (516)
Q Consensus       288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~  367 (516)
                      ..++.....+|..||++++...+..|+.+.++.....                                        ...
T Consensus        87 ~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~----------------------------------------~~~  126 (208)
T d1m7ga_          87 AEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVAT----------------------------------------PGE  126 (208)
T ss_dssp             HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCC----------------------------------------TTC
T ss_pred             HHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhc----------------------------------------cch
Confidence            6789999999999999999999988887765532110                                        012


Q ss_pred             CCCceEEEEEEecCHHHHHHHHHHh
Q 010176          368 RKPYRIELVGVVCDAYLAVVRGIRR  392 (516)
Q Consensus       368 ~~gy~I~li~V~~d~elav~R~~~R  392 (516)
                      ..+.....|+|.||.+++..|...+
T Consensus       127 ~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_         127 ETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             SCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             hcCCceEEEEEcCCHHHHHHhhccc
Confidence            3344455699999999998875544

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.1e-08  Score=88.30  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=87.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHH-------HHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELV-------HQSST  284 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v-------~~~~~  284 (516)
                      |.+|+|.|||||||||+|+.|++++++       .+|+++++     +|...... .++.........       .....
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~-------~~i~~g~l-----lR~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~~   67 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGY-------THLSAGEL-----LRDERKNP-DSQYGELIEKYIKEGKIVPVEITI   67 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH-----HHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC-------ceEcHHHH-----HHHHHHhh-hhhHHHHHHHHHhcCCccccchhh
Confidence            788999999999999999999999954       88865332     23222211 000000000000       00111


Q ss_pred             HHHHHHHHHHH---hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176          285 DAASSLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE  361 (516)
Q Consensus       285 ~~a~~la~~aL---~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~  361 (516)
                      ..+...+....   .....+++|+.-....+...+...                                          
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~------------------------------------------  105 (194)
T d1teva_          68 SLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKT------------------------------------------  105 (194)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHH------------------------------------------
T ss_pred             HHHHHhhcccchhhhcccceeeccchhhHHHHHHHhhh------------------------------------------
Confidence            11112222221   124567778776654433322111                                          


Q ss_pred             hhccccCCCceEE-EEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHh---HHHhhccCceEEEEecC
Q 010176          362 NRQVFSRKPYRIE-LVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANA---FRNYCELVDNARLYCTN  432 (516)
Q Consensus       362 ~~~~~~~~gy~I~-li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~---~~~y~~lvD~~~lydnn  432 (516)
                           ......+. +++++++.++.+.|...|....||... .+.+.++++.|.++   +..|-+-.+.+...|.|
T Consensus       106 -----~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~  176 (194)
T d1teva_         106 -----MDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS  176 (194)
T ss_dssp             -----HTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT
T ss_pred             -----hhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence                 01111233 357789999999999999988888665 44555544444443   33443444556666744

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.94  E-value=2.1e-09  Score=94.88  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .++|.-|++.|+|||||||+++.|++++.      +..+++.|.+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~------~~~~~~~~~~   40 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELD------GFQHLEVGKL   40 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST------TEEEEEHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhC------CCcEEeHHHH
Confidence            35678899999999999999999999984      3466644433

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=8.4e-08  Score=87.24  Aligned_cols=58  Identities=16%  Similarity=0.148  Sum_probs=39.1

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhH---HHhhccCceEEEEecC
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF---RNYCELVDNARLYCTN  432 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~---~~y~~lvD~~~lydnn  432 (516)
                      ++.+.+++++++.|...|....+|... .+.+.++++.|.++.   ..|-+..+.++..|++
T Consensus       117 ~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~  178 (196)
T d1ukza_         117 ILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD  178 (196)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS
T ss_pred             eeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            477889999999999999887666554 455566666665543   3344455666666643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.77  E-value=1.8e-07  Score=83.52  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=27.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|+|||||||+++.|++.+++       .++|.|.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~-------~~id~D~~   36 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGY-------EFVDTDIF   36 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-------CEEehhhh
Confidence            455699999999999999999955       89977765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=8.8e-08  Score=82.02  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA  294 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~a  294 (516)
                      |++.|+|||||||+++.|+++++       ..+++.|.+      +....+..   . ..............+.......
T Consensus         5 I~l~G~~GsGKSTvak~La~~L~-------~~~id~~~~------~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~   67 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE------IEKRTGAD---V-GWVFDLEGEEGFRDREEKVINE   67 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTT-------CEEEEHHHH------HHHHHTSC---H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CCeEeechh------HHhhhccc---c-cchhhhhhhhHHHHHHHHHHHh
Confidence            66679999999999999999994       478855543      33333320   0 0111111122222233344555


Q ss_pred             HhCCCcEEEeCCCCCh
Q 010176          295 LNEGRDVIMDGTLSWV  310 (516)
Q Consensus       295 L~~G~sVIvDaTfs~~  310 (516)
                      ...+..++...+....
T Consensus        68 ~~~~~~~~~~~~~~~~   83 (169)
T d1kaga_          68 LTEKQGIVLATGGGSV   83 (169)
T ss_dssp             HHTSSSEEEECCTTGG
T ss_pred             hccccceEeeccchhh
Confidence            5566677776666543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.70  E-value=1.4e-07  Score=85.30  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=30.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|..|++.|||||||||+++.|++.+++       .+|+++++
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~-------~~is~~~~   37 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQL-------AHISAGDL   37 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC-------EECCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCC-------cEEehhHH
Confidence            4777899999999999999999999954       89966554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1.4e-07  Score=84.87  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|||||||||+++.|+++++       ..+|+++++
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g-------~~~i~~~d~   36 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH-------AAHLATGDM   36 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CceEecccc
Confidence            45669999999999999999995       489976544

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=5.7e-08  Score=87.30  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|||||||||+++.|++.+++       .+|+++++
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~-------~~i~~~~l   34 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGI-------PQISTGEL   34 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC-------CEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------ceEchHHH
Confidence            677899999999999999999954       88876554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.67  E-value=2e-07  Score=84.71  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      ++|.+|++.|||||||||+++.|++++++       ++|+++++
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~-------~~is~g~l   42 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGY-------THLSTGDL   42 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCC-------EEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCC-------eeEeccHH
Confidence            46788999999999999999999999954       89976554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.3e-07  Score=83.47  Aligned_cols=44  Identities=27%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccC---CCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSG---AATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~---~~~~av~IdaD~ir  254 (516)
                      +|.+|.|+|++||||||+++.|++.++...   ......+|..|.|-
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            499999999999999999999999874311   11245788888873

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.64  E-value=3.3e-07  Score=82.74  Aligned_cols=32  Identities=25%  Similarity=0.222  Sum_probs=26.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .++|| .|||||||||+++.|+++++       ..+|+.+
T Consensus         4 ~riil-~G~pGSGKsT~a~~La~~~g-------~~~i~~g   35 (190)
T d1ak2a1           4 VRAVL-LGPPGAGKGTQAPKLAKNFC-------VCHLATG   35 (190)
T ss_dssp             CEEEE-ECCTTSSHHHHHHHHHHHHT-------CEEEEHH
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHHHhC-------CeEEeHH
Confidence            45554 59999999999999999994       5899663

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.58  E-value=6.2e-08  Score=85.21  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=23.7

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ++|+|.|+|||||||+++.|++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999998854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-07  Score=84.68  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=63.3

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS  288 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~  288 (516)
                      ..++.+|+++|+|||||||+|+.|++.+++.  ......++.|.++..      .... .......     .........
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~--~~~~~~~~~d~~~~~------~~~~-~~~~~~~-----~~~~~~~~~   81 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQG------LNKN-LGFSPED-----REENVRRIA   81 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHT--TCCEEEECHHHHTTT------TTTT-CCSSHHH-----HHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCccchhHHhhhcc------cccc-cchhhhH-----HHHHHHHHH
Confidence            3468999999999999999999999988541  123355544444322      2111 1111111     122233344


Q ss_pred             HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHH
Q 010176          289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA  320 (516)
Q Consensus       289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lA  320 (516)
                      ..+......+..++++++......+..+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (195)
T d1x6va3          82 EVAKLFADAGLVCITSFISPYTQDRNNARQIH  113 (195)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccccccccchHHHHHHHHHHH
Confidence            57888899999999999999887776665543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.4e-06  Score=78.34  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE--eCcccccchHHHHHHhcCCC---C-ChhhHHHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV--EADAFKETDVIYRALSSKGH---H-DDMLQTAELVHQSSTD  285 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I--daD~ir~sD~irk~L~~~~~---~-~~~~y~~e~v~~~~~~  285 (516)
                      .++|++-|+.||||||+++.|.+.+.-.  +-..+++  .|+.-.-...++..+.....   . ..+....-........
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~--g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQL--GIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   79 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHH
Confidence            4689999999999999999999876320  1122222  22221112334443333211   0 0111111111112223


Q ss_pred             HHHHHHHHHHhCCCcEEEeCC
Q 010176          286 AASSLLVTALNEGRDVIMDGT  306 (516)
Q Consensus       286 ~a~~la~~aL~~G~sVIvDaT  306 (516)
                      .....+..++.+|..||.|--
T Consensus        80 ~~~~~i~~~l~~~~~vi~DRy  100 (210)
T d4tmka_          80 LVETVIKPALANGTWVIGDRH  100 (210)
T ss_dssp             HHHHTHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCcccccch
Confidence            345567889999999999954

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.53  E-value=2.7e-07  Score=80.54  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=27.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...++.+|++.|+|||||||+|+.|++.+.
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456789999999999999999999999984

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=5.7e-07  Score=79.70  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .|.+|++ |+|||||||+++.|++.+++       .++|.|.+
T Consensus         1 ~p~Ivli-G~~G~GKSTig~~La~~l~~-------~fiD~D~~   35 (165)
T d2iyva1           1 APKAVLV-GLPGSGKSTIGRRLAKALGV-------GLLDTDVA   35 (165)
T ss_dssp             CCSEEEE-CSTTSSHHHHHHHHHHHHTC-------CEEEHHHH
T ss_pred             CCcEEEE-CCCCCCHHHHHHHHHHHhCC-------CeEeeccc
Confidence            3787777 99999999999999999965       78977754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=3.8e-07  Score=82.43  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=27.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...+|.+|+|.|+.||||||+++.|++.+.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            567899999999999999999999998873

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.38  E-value=1.8e-06  Score=76.50  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=27.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|+|||||||+++.|++.++       ..++|.|.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~-------~~~~d~d~~   34 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD-------LVFLDSDFL   34 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CCEEecCch
Confidence            55669999999999999999995       489987754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.36  E-value=2.2e-06  Score=75.42  Aligned_cols=26  Identities=31%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ++|++.|+|||||||+++.|++.++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999998853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=3.2e-06  Score=77.97  Aligned_cols=37  Identities=30%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ++.+|.++|++||||||+++.|. ++       |+.++|+|.+.+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~-------G~~vidaD~i~~   38 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DL-------GINVIDADIIAR   38 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HT-------TCEEEEHHHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HC-------CCcEEEchHHHH
Confidence            45789999999999999999875 55       458998887753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.35  E-value=2.6e-07  Score=80.58  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |. |+++|+|||||||+++.|+++++       ..+++.|++
T Consensus         5 ~~-I~i~G~pGsGKTTia~~La~~l~-------~~~i~~~~~   38 (173)
T d1rkba_           5 PN-ILLTGTPGVGKTTLGKELASKSG-------LKYINVGDL   38 (173)
T ss_dssp             CC-EEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHHC-------CcEEechHH
Confidence            44 45779999999999999999995       478865543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.31  E-value=5.2e-07  Score=80.17  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=27.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |+|.|||||||||+++.|++++++       .+|+++++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~-------~~i~~~~l   34 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGI-------PHISTGDM   34 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC-------ceechhHH
Confidence            778999999999999999999954       89976554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.31  E-value=2.7e-06  Score=78.25  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..+|.|+|++||||||+++.|. ++       |+.++|+|.+.
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~-------G~~vidaD~i~   36 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DL-------GVPLVDADVVA   36 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TT-------TCCEEEHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HC-------CCeEEEchHHH
Confidence            4688899999999999999876 55       45889888764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.3e-06  Score=76.30  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |++.|||||||||+++.|+++++       ..+|+++++
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~-------~~~i~~~~l   34 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG-------IPQISTGDM   34 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-------CceechhhH
Confidence            66789999999999999999995       488965443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.30  E-value=3.9e-07  Score=81.18  Aligned_cols=47  Identities=15%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....|.+|.|+|++||||||+|+.|.+.++.  .......++.|.+...
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~--~~~~~~~~~~~~~~~~   64 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMDDHIVE   64 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGCCC
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc--ccccceeccccccccC
Confidence            4567999999999999999999999987743  1224456666655443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.30  E-value=6.7e-07  Score=87.89  Aligned_cols=44  Identities=32%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +.| +|.|+|+|||||||+++.|.+.++.  ....+.+|+.|.|-+.
T Consensus         3 k~p-IIgIaG~SGSGKTTva~~l~~i~~~--~~v~~~iI~~Dsfyr~   46 (288)
T d1a7ja_           3 KHP-IISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGDAFHRF   46 (288)
T ss_dssp             TSC-EEEEESCC---CCTHHHHHHHHHHH--HTCCEEEEEGGGGBSC
T ss_pred             CCC-EEEEECCCCCcHHHHHHHHHHHHhh--cCCCeEEEeCCCCCcc
Confidence            344 8999999999999999998876632  1225679999998654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=2.1e-06  Score=77.43  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.+|.++|++||||||+|+.|. +++       +.++++|.+.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g-------~~~~~~D~~~   37 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWG-------YPVLDLDALA   37 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTT-------CCEEEHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCC-------CeEEEccHHH
Confidence            59999999999999999999885 453       4788888764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.29  E-value=9.3e-06  Score=73.86  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +..+++ +.|+|||||||+++.|+++++       ..+|+++++
T Consensus         5 r~mrIi-liG~PGSGKtT~a~~La~~~g-------~~~is~gdl   40 (189)
T d2ak3a1           5 RLLRAA-IMGAPGSGKGTVSSRITKHFE-------LKHLSSGDL   40 (189)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHHHBC-------CEEEEHHHH
T ss_pred             cceeEE-EECCCCCCHHHHHHHHHHHHC-------CeEEcHHHH
Confidence            344555 459999999999999999994       489977543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.1e-06  Score=75.33  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=48.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH----HHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI----YRALSSKGHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i----rk~L~~~~~~~~~~y~~e~v~~~~~~~  286 (516)
                      +..+|++.|+.||||||+++.|.+.+..  .+..++++  ++...+.+.    ++-+.+. ....+... ...+......
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~--~g~~v~~~--~~p~~~~~~~~~i~~~l~~~-~~~~~~~~-~~l~~~~r~~   75 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCA--AGHRAELL--RFPERSTEIGKLLSSYLQKK-SDVEDHSV-HLLFSANRWE   75 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEE--ESSCTTSHHHHHHHHHHTTS-SCCCHHHH-HHHHHHHHHT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEE--eCCCCCcccchhhhhhhhcc-cccchhhh-hhHHHHHHHH
Confidence            5689999999999999999999887732  12234443  122222222    2222221 11111111 1111111111


Q ss_pred             HHHHHHHHHhCCCcEEEeCC
Q 010176          287 ASSLLVTALNEGRDVIMDGT  306 (516)
Q Consensus       287 a~~la~~aL~~G~sVIvDaT  306 (516)
                      ....+..+|.+|..||+|-.
T Consensus        76 ~~~~i~~~l~~g~~VI~DRy   95 (209)
T d1nn5a_          76 QVPLIKEKLSQGVTLVVDRY   95 (209)
T ss_dssp             THHHHHHHHHTTCEEEEESC
T ss_pred             HHHhHHHHhhcccceeecch
Confidence            12467889999999999954

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.17  E-value=5.8e-06  Score=73.88  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      |++.|||||||||+++.|+++++       .++|++++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g-------~~~is~gd   33 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG-------TPHISTGD   33 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC-------CceeeHHH
Confidence            67789999999999999999995       48886644

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=5.8e-05  Score=67.98  Aligned_cols=58  Identities=16%  Similarity=0.045  Sum_probs=34.9

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccc--hhhhHhHHHHHHHhHHHhhc--cCceEEEEecC
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVR--VNSQLKSHKRFANAFRNYCE--LVDNARLYCTN  432 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp--~~~ql~s~~rf~~~~~~y~~--lvD~~~lydnn  432 (516)
                      +|++.++|+++.+|...|........+  .++....+++..+.+.....  .-..+.+.|.|
T Consensus       136 ~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~  197 (208)
T d1gsia_         136 QVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGAD  197 (208)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTT
T ss_pred             eEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            478899999999999999864433332  22333444444444443322  23457777755

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.2e-05  Score=79.54  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA  262 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~  262 (516)
                      ..+.|.+|.|+|++||||||+|+.|...+.-....+.+.+|..|.|-..+..+++
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~  130 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKE  130 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHH
Confidence            4578999999999999999999999887631112346788999999765555443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=5.1e-06  Score=74.51  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++|++.|||||||||+++.|.+++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            3689999999999999999999876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=0.00021  Score=65.89  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=24.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++++|++-|+-||||||+++.|++.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            578999999999999999999999883

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=4.4e-06  Score=72.54  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      -.++.|+|.|+|||||||+++.|++.++       ..++..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~-------~~~i~~   38 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFN-------TTSAWE   38 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTT-------CEEECC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhC-------CCeEee
Confidence            3478899999999999999999999984       467743

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.9e-06  Score=76.68  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+|+++|||||||||+.+.|.+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.74  E-value=1.2e-05  Score=73.32  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ++.+|.|-|||||||||+|+.|+++++       ..+|++
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg-------~~~ist   34 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFG-------FTYLDT   34 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC-------CEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC-------CcEECH
Confidence            456788899999999999999999995       489954

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00015  Score=67.72  Aligned_cols=46  Identities=22%  Similarity=0.461  Sum_probs=38.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      +...|.+|++.||+|+||||.+..|+..+.  ..+....+|.+|.+|-
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~--~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEECCCTTCH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEecccccc
Confidence            567799999999999999999999987653  2345678999999985

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.3e-05  Score=72.44  Aligned_cols=22  Identities=41%  Similarity=0.727  Sum_probs=20.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|||||||||+++.|++++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.9e-05  Score=71.32  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=26.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      +|+|.|||||||||+|+.|+++++       ..+|++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g-------l~~iSt   34 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ-------WHLLDS   34 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT-------CEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-------CcEECH
Confidence            788899999999999999999995       489943

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1.3e-05  Score=72.79  Aligned_cols=23  Identities=43%  Similarity=0.723  Sum_probs=20.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~  237 (516)
                      |++.|||||||||+++.|++.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            77999999999999999998763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.0011  Score=60.82  Aligned_cols=42  Identities=10%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF  416 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~  416 (516)
                      +|+++++|+.+..|+..|....-..++.+.+.+-|+.+..-+
T Consensus       153 ~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~  194 (241)
T d2ocpa1         153 FIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWL  194 (241)
T ss_dssp             EEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHH
Confidence            589999999999999999876656677666655555554433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=0.00027  Score=65.99  Aligned_cols=46  Identities=24%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ++.+|.+|++.||+|+||||.+..|+..+.  ..+....+|.+|.+|-
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~--~~~~kV~lit~Dt~R~   52 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA   52 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCceEEEeeccccc
Confidence            567899999999999999999999987663  2234678899999984

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.2e-05  Score=72.63  Aligned_cols=25  Identities=16%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .++|++.|||||||||+.+.|.++.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            4568889999999999999999765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=9.9e-05  Score=68.34  Aligned_cols=48  Identities=15%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA  262 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~  262 (516)
                      ..+..+++.||||+||||+++.++.+++.     ....++..+.+..+.++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~-----~~~~~~~~~~~~~~~~~~~   97 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNASDVRSKTLLNAG   97 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTTSCCCHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHh-----hhhccccccchhhHHHHHH
Confidence            34457888999999999999999999854     5677888777665555444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.5e-05  Score=65.15  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++.++|+|||||||+++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            477789999999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.29  E-value=5.1e-05  Score=70.30  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe-Cccccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKE  255 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id-aD~ir~  255 (516)
                      .+|.++|+.||||||+|+.|.+.+       |+.+++ +|.+++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-------g~~~i~~aD~i~~   38 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-------SAVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-------CEEECCTTHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-------CCeEEcccHHHHH
Confidence            478999999999999999999887       468896 566543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.27  E-value=0.00096  Score=61.76  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=37.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ....|.+|++.||+|+||||.+..|+..+.-  .+....+|.+|.+|..
T Consensus         6 ~~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~--~g~kV~lit~Dt~R~g   52 (207)
T d1ls1a2           6 VLKDRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA   52 (207)
T ss_dssp             CCCSSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEecccccch
Confidence            3456889999999999999999999876632  2346789999999843

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00017  Score=70.30  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc-CCCCceEEEeCcccccchHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAFKETDVIYRALSS  265 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~-~~~~~av~IdaD~ir~sD~irk~L~~  265 (516)
                      ..++|.+|-|+|++||||||++..|...+.-. +....+.+|.-|+|-.+...+..|..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~   81 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNE   81 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhh
Confidence            56789999999999999999999886554100 00124677899998666555666543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00015  Score=66.77  Aligned_cols=32  Identities=31%  Similarity=0.317  Sum_probs=26.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      -+++.||||+||||+|+.|+.+++.     +...+++
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~-----~~~~~~~   68 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSG   68 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEET
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCC-----CcccccC
Confidence            4678999999999999999999865     4555544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.17  E-value=0.00014  Score=67.79  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      +.+.|.+|++.||+|+||||.+..|+..+.-  .+....+|..|.+|-.
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~--~g~kV~lit~Dt~R~g   54 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKK--KGFKVGLVGADVYRPA   54 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHH--TTCCEEEEECCCSSHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCceEEEEeeccccc
Confidence            5678999999999999999999999876632  2346788999999843

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.15  E-value=0.00017  Score=66.98  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=37.5

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      ..+|.+|++.||+||||||.+..|+..+.  ..+....+|.+|.+|..
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~--~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEecccccc
Confidence            45789999999999999999999987653  23456789999999854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.13  E-value=0.0001  Score=64.28  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~  238 (516)
                      |+|.|||||||||+++.++..+.+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            788999999999999999988754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=8.9e-05  Score=63.90  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.|+|.|+|||||||+++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3588999999999999999998773

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00025  Score=67.66  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=33.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ...|+-+++.||||+|||++++.++.+++.     ..+.|++..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~-----~~~~i~~~~l~   82 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSDFV   82 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCSST
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCC-----CEEEEEhHHhh
Confidence            346788999999999999999999999854     56777665554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.90  E-value=0.00041  Score=63.18  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=27.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .+|++.|++||||||+.+.|.+.+.   ....+.+||.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~---~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh---hCCeEEEEecC
Confidence            3689999999999999999987653   23456677654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00048  Score=63.37  Aligned_cols=34  Identities=32%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      |.=+++.||||+||||+|+.++.+++.     ....+++
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~-----~~~~~~~   68 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSG   68 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTC-----CEEEEET
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC-----CeEeccC
Confidence            344678999999999999999999865     4555644

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.84  E-value=0.012  Score=57.91  Aligned_cols=46  Identities=15%  Similarity=0.044  Sum_probs=31.3

Q ss_pred             EEEEecCHHHHHHHHHHhhhhcCcccchhhhH---hHHHHHHHhHHHhhcc
Q 010176          375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQL---KSHKRFANAFRNYCEL  422 (516)
Q Consensus       375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql---~s~~rf~~~~~~y~~l  422 (516)
                      +|++++||+++..|+.+|...+-+ |+.+.+.   +.|..+.+.. .|++-
T Consensus       158 iIyLd~~pe~~l~RI~~RgR~~E~-idl~YL~~L~~~Y~~L~nT~-~yl~~  206 (329)
T d1e2ka_         158 IVLGALPEDRHIDRLAKRQRPGER-LDLAMLAAIRRVYGLLANTV-RYLQC  206 (329)
T ss_dssp             EEEEECCHHHHHHHHHHSCCTTCC-CCHHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred             EEEEeCCHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHHhHH-HHHcc
Confidence            488999999999999999876543 7755553   4555555432 35443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.0003  Score=66.69  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..|.-+++.||||+|||++++.++.++++     ..+.|++
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~-----~~~~i~~   75 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASG   75 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCC-----CEEEEEh
Confidence            45778999999999999999999999865     4566643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.77  E-value=0.015  Score=57.25  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++..|.+-|+-||||||+++.|++.+.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            367899999999999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.00046  Score=67.16  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=32.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      ..|.-+++.||||+|||++|++|++.++.     ..+.++.-+|.
T Consensus        47 ~~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~~~   86 (309)
T d1ofha_          47 VTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT   86 (309)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHhhcccc-----chhcccccccc
Confidence            35677888999999999999999998853     56778776664

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.00036  Score=60.88  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +|.|+|.+||||||++..|+.++.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999998773

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.65  E-value=0.00077  Score=63.60  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      .|.=|++.||||+|||++++.|+.+++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~   66 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNF   66 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcccc
Confidence            3566899999999999999999999854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.00055  Score=64.84  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=25.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ..|+-+++.||||+|||+++++++.+.+.
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCC
Confidence            45777999999999999999999999854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00069  Score=61.95  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=21.3

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+++.||||+||||+++.+++++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            477899999999999999998763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.47  E-value=0.00074  Score=61.75  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=24.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..|..+++.||||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4577889999999999999999998873

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00067  Score=64.60  Aligned_cols=29  Identities=28%  Similarity=0.263  Sum_probs=25.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ..|.-|++.||||+|||+++++++.+++.
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~   67 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQA   67 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCC
Confidence            45677999999999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.29  E-value=0.00081  Score=63.35  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=40.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA  262 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~  262 (516)
                      .-.+..++.+.|||||||||+.+.|+.-..+   ..|-+.++.-++....+.++.
T Consensus        22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~~~G~~i~~~~~~~r~   73 (229)
T d3d31a2          22 KVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHD   73 (229)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHT
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCCEEEEccEeccccchhHhc
Confidence            3456789999999999999999999875533   346689988888776666554

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00085  Score=63.51  Aligned_cols=52  Identities=23%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHH
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRA  262 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~  262 (516)
                      .-++...+.|.|+|||||||+++.|..-+.+   ..|.+.||.-++...+  .+|+.
T Consensus        25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~   78 (241)
T d2pmka1          25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQ   78 (241)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecccchhhhhce
Confidence            4456788999999999999999999876643   3477899887776433  34444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.25  E-value=0.00085  Score=61.72  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.++++.||||+||||+++.+++.+
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHH
Confidence            4467789999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.25  E-value=0.0012  Score=66.08  Aligned_cols=43  Identities=16%  Similarity=0.121  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..+++..+++.||||+||||++..|+..++.     ..+.+|+-+.++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~-----~~i~in~s~~rs  192 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGG-----KALNVNLPLDRL  192 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCC-----EEECCSSCTTTH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEECcchhh
Confidence            3456679999999999999999999999954     444455544443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=62.14  Aligned_cols=47  Identities=17%  Similarity=0.181  Sum_probs=36.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      .-++...+.+.|+|||||||+++.|..-+.+   ..|.+.||.-++...+
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p---~~G~I~i~g~~i~~~~   82 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQP---TGGQLLLDGKPLPQYE   82 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCC---CcCEEEECCEecchhh
Confidence            4567789999999999999999999876533   3467889887776543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.001  Score=60.62  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~  237 (516)
                      +++.||||+||||+|+.++.++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            56799999999999999998874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.14  E-value=0.0015  Score=61.65  Aligned_cols=46  Identities=13%  Similarity=0.290  Sum_probs=34.8

Q ss_pred             ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ..-++...+.+.|+|||||||+.+.|..-+.+   ..|-+.+|.-.+.+
T Consensus        23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~   68 (242)
T d1mv5a_          23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDN   68 (242)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC---CCCEEEECCEEecc
Confidence            34567789999999999999999999865533   23668887665543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0022  Score=57.01  Aligned_cols=47  Identities=17%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             HHHHHHHhcccccccccccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176          186 EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW  238 (516)
Q Consensus       186 e~~~~~~~~A~~~~~~~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~  238 (516)
                      ++.+.+..+|..+..      ...+.+.+|++.|.-||||||+++.+++.++.
T Consensus        13 ~t~~lg~~la~~l~~------~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          13 SMLRFGKKFAEILLK------LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             HHHHHHHHHHHHHHH------HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHh------ccCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            455555555554431      02345678999999999999999999999975

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0013  Score=59.81  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      +++.||||+||||+++.++.++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6788999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.99  E-value=0.021  Score=56.01  Aligned_cols=42  Identities=17%  Similarity=0.000  Sum_probs=25.0

Q ss_pred             EEEEEecCHHHHHHHHHHhhhhcCcccchhhh---HhHHHHHHHhH
Q 010176          374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQ---LKSHKRFANAF  416 (516)
Q Consensus       374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~q---l~s~~rf~~~~  416 (516)
                      .+|++++||+++.+|+.+|...+-+ ++.+..   ...|..+.+..
T Consensus       162 liIyLd~~pe~~l~RIk~RgR~~E~-i~~eYL~~L~~~Y~~L~nT~  206 (331)
T d1osna_         162 NLVVCTVSLPSHLSRVSKRARPGET-VNLPFVMVLRNVYIMLINTI  206 (331)
T ss_dssp             EEEEEECCHHHHHHHCC------CC-CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999876543 775554   44555555443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.98  E-value=0.0017  Score=61.71  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=35.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      .-++...+.|.|+|||||||+++.|..-+.+   ..|.+.||.-++...+
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~   83 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYT   83 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccCC---CccEEEECCcccchhh
Confidence            4466788999999999999999999865533   3467888877766543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0013  Score=61.97  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=35.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .-.+..++.+.|||||||||+.+.++.-..+   ..|-+.++...+...
T Consensus        22 ~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~   67 (232)
T d2awna2          22 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDT   67 (232)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEESSSCCTTS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEECCCC
Confidence            4466789999999999999999998765432   346688888777544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0034  Score=53.50  Aligned_cols=46  Identities=7%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +.++...|++.|.+||||||+|.+|...+.--+.+.....+|.|.+
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni   47 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK   47 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence            4567889999999999999999999877621011223455655543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0029  Score=59.15  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ...+|++|++.|--|+||||++-.|+..+-  ..+....+||.|-
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~lA~~lA--~~G~rVLlvD~Dp   46 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDP   46 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCT
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHHHHHHH--HCCCCEEEEeCCC
Confidence            456799999999999999999999887762  2344678899883

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0019  Score=55.88  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...++++.|+|||||||++..++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0017  Score=59.57  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -+++.||||+||||+++.++.++
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            36799999999999999999986

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.84  E-value=0.0014  Score=59.99  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=32.2

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .-++..++.+.|||||||||+.+.|+.-+.+   -.|-+.+|.-.+
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i   65 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPI   65 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhccccc---CCCEEEECCEeh
Confidence            4466788999999999999999999876533   235577765444

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.84  E-value=0.0011  Score=62.82  Aligned_cols=43  Identities=21%  Similarity=0.108  Sum_probs=32.0

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI  259 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i  259 (516)
                      ++.+.|||||||||+.+.|+.-+.+   ..|.+.++.-++.+.++.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~~   68 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPE   68 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTT
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCcCCHH
Confidence            5567799999999999999976633   346788887766554433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.002  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=21.6

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      |. +++.||||+||||+++.++.++.
T Consensus        36 ~~-lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          36 PH-LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             Ce-EEEECCCCCChhHHHHHHHHHhh
Confidence            44 56799999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.71  E-value=0.0028  Score=59.76  Aligned_cols=46  Identities=17%  Similarity=0.212  Sum_probs=36.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .-++..++.+.|||||||||+.+.|..-+.+   ..|-+.++..++.+.
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~~   73 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNK   73 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTC
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEecccccccc
Confidence            3456789999999999999999999876533   246788988777643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0041  Score=60.47  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=33.6

Q ss_pred             cCCCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .+.+|. .++++||||+|||.+|+.|++.++.     ..+.+|.=++...
T Consensus        47 ~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~-----~~i~~d~s~~~~~   91 (315)
T d1r6bx3          47 HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMER   91 (315)
T ss_dssp             CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSSS
T ss_pred             CCCCCceEEEEECCCcchhHHHHHHHHhhccC-----CeeEeccccccch
Confidence            344555 6889999999999999999998843     5677776666543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.0019  Score=61.00  Aligned_cols=46  Identities=17%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .-.+..++.+.|||||||||+.+.+..-..+   ..|-++++.-++...
T Consensus        28 ~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~   73 (239)
T d1v43a3          28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYL   73 (239)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTS
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEEcceecccC
Confidence            4466788999999999999999999875532   235688877666443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.62  E-value=0.003  Score=59.73  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-++..++.+.|||||||||+.+.|+.-..+   ..|-++++..++.
T Consensus        25 ~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~~~g~~i~   68 (240)
T d1g2912          25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVA   68 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEE
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEEec
Confidence            3456778999999999999999999865432   2356888776553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.61  E-value=0.0037  Score=61.31  Aligned_cols=29  Identities=21%  Similarity=0.214  Sum_probs=25.0

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ...+...|-|+|+|||||||+...|...+
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0037  Score=61.45  Aligned_cols=28  Identities=32%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+...|-|+|+|||||||+...|...+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4568889999999999999999998765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.58  E-value=0.0045  Score=56.26  Aligned_cols=41  Identities=15%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA  252 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~  252 (516)
                      ++..++++.|+|||||||++.+++....  ..+....++..++
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~e~   64 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEE   64 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSS
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHH--HhccccceeeccC
Confidence            3578999999999999999999988752  1233567786654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0029  Score=59.81  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=34.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-.+..++.+.|+|||||||+.+.|..-..+   ..|.+.++.-++.+
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~~~g~~i~~   71 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTT   71 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSSCC---SEEEEEETTEEECT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccc---cCCceEEcCeEeee
Confidence            4567789999999999999999999765432   33668887766654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.57  E-value=0.0026  Score=60.36  Aligned_cols=47  Identities=23%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD  257 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD  257 (516)
                      +-++..++.+.|||||||||+.+.|..-+.+   ..|-+.++..++....
T Consensus        26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i~~~~   72 (254)
T d1g6ha_          26 SVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKE   72 (254)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCC
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHCCCcC---CCcEEEECCEeccchh
Confidence            4456789999999999999999999876533   2366888887775443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0029  Score=60.97  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             cccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          202 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       202 ~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      +......-++..++.|.|+|||||||+.+.|+..+.+   ..|.+.++.
T Consensus        52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g   97 (281)
T d1r0wa_          52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSG   97 (281)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEECCS
T ss_pred             EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC---CCcEEEECC
Confidence            3344445677889999999999999999999876633   224455543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.55  E-value=0.0033  Score=59.02  Aligned_cols=45  Identities=20%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-.+..++.+.|+|||||||+.+.++.-..+   ..|-++++.-++..
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~~   71 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTND   71 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTT
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCCCC---CcceeEECCEEcCc
Confidence            4567789999999999999999988764432   23668887766643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.55  E-value=0.0019  Score=61.52  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=35.5

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET  256 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s  256 (516)
                      .-++...+.+.|+|||||||+.+.|..-+.+   ..|.+.+|.-+++..
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~   85 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDF   85 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCCc---cccccccCCEEcccC
Confidence            4566789999999999999999998865533   346788887776643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.40  E-value=0.0062  Score=55.24  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      +.+++|.|++|+||||+++.++...+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            45788999999999999999998874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.33  E-value=0.0039  Score=59.39  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-.+..++.+.|+|||||||+++.|..-..+   ..|-++++..++.
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~~~G~~i~   67 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNIN   67 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHcCccC---CCCCEEECCEEec
Confidence            4567789999999999999999999754422   2366888776653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.31  E-value=0.0043  Score=56.26  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ++..+++|.|+|||||||++-.++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456899999999999999999998654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0025  Score=57.83  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=23.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -++|++-|+.||||||+++.|++.+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.0056  Score=57.52  Aligned_cols=45  Identities=24%  Similarity=0.146  Sum_probs=34.7

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-....++-+.|||||||||+.+.|+.-..+   ..|-+.++.-++.+
T Consensus        24 ~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~~   68 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVE   68 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECcEeccc
Confidence            4567789999999999999999999876643   23567787666543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0035  Score=56.15  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=22.4

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.-.++++.|+|||||||++..++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35679999999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0066  Score=56.61  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .-++..++.+.|+|||||||+.+.|..-..    ..|.+.++...+..
T Consensus        21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~   64 (231)
T d1l7vc_          21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEA   64 (231)
T ss_dssp             EEETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CceEEEECCEECCc
Confidence            446778999999999999999999986332    34678888776654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.07  E-value=0.005  Score=62.91  Aligned_cols=40  Identities=33%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .|.=|||.||+|||||-+|+.|++.++.     ..+.+|+-.|-+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fTe   87 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE   87 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC-
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceeee
Confidence            4677999999999999999999998843     345666655543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0063  Score=55.32  Aligned_cols=30  Identities=17%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ..+-|..+++.||+|+||||+++.++..+.
T Consensus        20 ~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          20 AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            445578899999999999999999998773

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.007  Score=54.59  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=23.2

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ++..+++++|+||||||+++..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0067  Score=55.97  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=25.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+-|..+++.||||+||||+|+.++..+.
T Consensus        31 ~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          31 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             TCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            34477889999999999999999998874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.97  E-value=0.0035  Score=59.32  Aligned_cols=44  Identities=18%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .-++..++.+.|||||||||+.+.|..-..+   ..|-+.++.-++.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~~~g~~i~   70 (242)
T d1oxxk2          27 NIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVA   70 (242)
T ss_dssp             EECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEE
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCcCC---CCceEEECCEEee
Confidence            4566789999999999999999999865432   2356788776654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.013  Score=55.72  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=36.7

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK  266 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~  266 (516)
                      ...++.+.|+|||||||++-.++....-  .+..+++||+..  ..++.|.+-.+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~--~g~~~vyidtE~--~~~~~~a~~~Gv  104 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEH--ALDPIYARKLGV  104 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC--CCCHHHHHHTTC
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEEcccc--ccCHHHHHHhCC
Confidence            4689999999999999999998765521  134578898765  344455444454

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.76  E-value=0.0079  Score=53.61  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=23.9

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +...++++.|+||+||||++..++...
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998755

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.70  E-value=0.0081  Score=54.17  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...-+++.|+||+||||++..|.+.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3566899999999999999999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.70  E-value=0.0084  Score=50.13  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.||+||||+...+...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6789999999999999997654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.62  E-value=0.0099  Score=53.50  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..-|++.|+||+||||++..|.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            466889999999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.014  Score=56.69  Aligned_cols=46  Identities=20%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             cCCCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          208 SERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       208 ~~~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      .+.+|. .++++||+|+|||.+|+.|++.+..  .....+.+|.-++..
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~--~~~~~~~~~~~~~~~   94 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYME   94 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS--SGGGEEEECTTTCCS
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHHHHhcC--CCcceEEEecccccc
Confidence            445665 6789999999999999999998731  123456676656654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.49  E-value=0.017  Score=55.10  Aligned_cols=89  Identities=15%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      +.+.+..+.|++||||||++..++....-  .+..+++||+..  ..|+.+.+-.|.+.. ...+......++..+    
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk--~g~~v~yiDtE~--~~~~~~a~~~Gvd~d-~i~~~~~~~~E~~~~----  125 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEH--ALDPVYARALGVNTD-ELLVSQPDNGEQALE----  125 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC--CCCHHHHHHTTCCGG-GCEEECCSSHHHHHH----
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHh--CCCEEEEEECCc--cCCHHHHHHhCCCch-hEEEEcCCCHHHHHH----
Confidence            46789999999999999999998765421  134578998864  345555554554211 111111111222333    


Q ss_pred             HHHHHHhCC--CcEEEeCCC
Q 010176          290 LLVTALNEG--RDVIMDGTL  307 (516)
Q Consensus       290 la~~aL~~G--~sVIvDaTf  307 (516)
                      .++..++.+  .-||+|+.-
T Consensus       126 ~~~~l~~~~~~~liIiDSi~  145 (268)
T d1xp8a1         126 IMELLVRSGAIDVVVVDSVA  145 (268)
T ss_dssp             HHHHHHTTTCCSEEEEECTT
T ss_pred             HHHHHHhcCCCcEEEEeccc
Confidence            445555555  358889653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.43  E-value=0.021  Score=54.53  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~  289 (516)
                      +...+..+.|+|||||||++-.++....-  .+..+++||+..  ..++.|-+-.+.+.. ...+....+.++..+    
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~--~g~~~vyIDtE~--~~~~e~a~~~GvD~d-~il~~~~~~~E~~~~----  128 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEH--ALDPDYAKKLGVDTD-SLLVSQPDTGEQALE----  128 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHH--TTCEEEEEESSC--CCCHHHHHHHTCCGG-GCEEECCSSHHHHHH----
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhc--CCCEEEEEECCc--cCCHHHHHHhCCCHH-HeEEecCCCHHHHHH----
Confidence            56789999999999999999887664321  133568898865  334555444454211 111111111223333    


Q ss_pred             HHHHHHhCCC--cEEEeCCCC
Q 010176          290 LLVTALNEGR--DVIMDGTLS  308 (516)
Q Consensus       290 la~~aL~~G~--sVIvDaTfs  308 (516)
                      .++..++++.  -||+|+.-.
T Consensus       129 ~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         129 IADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHHHHHHTTCEEEEEEECSTT
T ss_pred             HHHHHHhcCCCCEEEEecccc
Confidence            4455566663  588897543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.41  E-value=0.0083  Score=53.27  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      +...+++|.|+||+|||+++..++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999999988754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.0012  Score=56.73  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      |.+.+|.|+|||||||+..+|.--+
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4577889999999999999997655

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.30  E-value=0.015  Score=51.79  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...-+++.|+||+||||++-.|.+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3567899999999999999998876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.28  E-value=0.0094  Score=54.60  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=28.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      +++.|++|||||+++.+++.+..-  .....+++++.++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~--~~~~~~~~~~~~~~   76 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSADDFA   76 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc--CccceEEechHHHH
Confidence            678999999999999999887632  23456778665553

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.009  Score=55.03  Aligned_cols=23  Identities=43%  Similarity=0.775  Sum_probs=20.6

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +++|+|.-||||||+.+.+++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.018  Score=53.37  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=34.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      .+...++|+++|--|+||||++-.|+..+-  ..+....+||.|--
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA--~~G~rVllvD~Dp~   59 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLA--DMGFDVHLTTSDPA   59 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESCCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCCC
Confidence            456789999999999999999888877662  22346788999953

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.014  Score=51.38  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=20.4

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +|++ ++.|+||+||||+..+|...-
T Consensus         3 ~p~V-~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           3 QPSI-IIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CCEE-EEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEE-EEECCCCCCHHHHHHHHhCCC
Confidence            4664 567999999999999998653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.10  E-value=0.011  Score=57.01  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      ++|.|+||+||||+++.++.-+
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            6889999999999999999766

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.05  E-value=0.015  Score=56.71  Aligned_cols=83  Identities=18%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT  293 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~  293 (516)
                      |+++|++||||||+.++|+...+.   ....+.| |+.++.=.        ............+.       .+..++..
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~---~~rivtiEd~~El~l~--------~~~~~~~~~~~~~~-------~~~~ll~~  230 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFK--------HHKNYTQLFFGGNI-------TSADCLKS  230 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEESSCCCCCS--------SCSSEEEEECBTTB-------CHHHHHHH
T ss_pred             EEEEeeccccchHHHHHHhhhccc---ccceeeccchhhhhcc--------cccccceeccccch-------hHHHHHHH
Confidence            788999999999999999987742   2234444 44443210        00000000000001       01236777


Q ss_pred             HHhCCCcEEEeCCCCChHHHHH
Q 010176          294 ALNEGRDVIMDGTLSWVPFVEQ  315 (516)
Q Consensus       294 aL~~G~sVIvDaTfs~~~~r~~  315 (516)
                      +|...-+.|+=+-...++-.+.
T Consensus       231 ~lR~~pd~iivgEiR~~ea~~~  252 (323)
T d1g6oa_         231 CLRMRPDRIILGELRSSEAYDF  252 (323)
T ss_dssp             HTTSCCSEEEESCCCSTHHHHH
T ss_pred             HhccCCCcccCCccCchhHHHH
Confidence            8888888888777777655443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.96  E-value=0.017  Score=50.74  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .-|+ |.+.|.|||||||+...|..
T Consensus        22 ~~~~-I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPE-IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCE-EEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCE-EEEECCCCCCHHHHHHHhcC
Confidence            3455 67779999999999999974

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.91  E-value=0.015  Score=54.00  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD  251 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD  251 (516)
                      .+..+++++|+||+||||++..++-.... ..+..+.++..+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~-~~g~~v~~~s~E   73 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLE   73 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHH-TSCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhh-hcccceeEeeec
Confidence            34579999999999999999999865311 112356677554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.015  Score=48.19  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.||+|||||...|....
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5688999999999999998654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.76  E-value=0.015  Score=58.24  Aligned_cols=94  Identities=22%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCC-hhhHHHHHHHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAASS  289 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~-~~~y~~e~v~~~~~~~a~~  289 (516)
                      .--+|+++||.||||||....+...+.-  ...+.+-|      + ||+=-.+.+..... ...      ....+   ..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~--~~~~i~ti------E-dPiE~~~~~~~q~~v~~~------~~~~~---~~  218 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTV------E-DPIEFDIDGIGQTQVNPR------VDMTF---AR  218 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEE------E-SSCCSCCSSSEEEECBGG------GTBCH---HH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcC--CCceEEEe------c-cCcccccCCCCeeeecCC------cCCCH---HH
Confidence            3478999999999999999999987632  11233334      1 21100011110000 000      00011   13


Q ss_pred             HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHh
Q 010176          290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN  322 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~  322 (516)
                      .+..+|...=+||+=+=...++....+++.|..
T Consensus       219 ~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa~t  251 (401)
T d1p9ra_         219 GLRAILRQDPDVVMVGEIRDLETAQIAVQASLT  251 (401)
T ss_dssp             HHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCEEEecCcCChHHHHHHHHHHhc
Confidence            667788888888888888887766666665543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.72  E-value=0.025  Score=55.34  Aligned_cols=24  Identities=13%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhcc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .+++.||||+|||.++++|+.+.+
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            456689999999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.65  E-value=0.025  Score=56.06  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE  255 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~  255 (516)
                      ...|.-+++.||+|+|||-+|++|++.+..     ..+.+|+=.|-+
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~-----~~ir~D~s~~~e  106 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDI-----PIAISDATSLTE  106 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCC-
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhccc-----ceeehhhhhccc
Confidence            345667889999999999999999987632     456666655543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.64  E-value=0.017  Score=48.32  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.||+|||||..++...-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999997653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.60  E-value=0.016  Score=49.58  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+||||||+..+|...
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            667899999999999999764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.014  Score=54.66  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      |.+-++.|+|||||||+..+|.--+
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            5578899999999999999986443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.38  E-value=0.019  Score=49.34  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHh
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .|++.|.+|+||||+.++|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4788999999999999999743

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.06  E-value=0.018  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=19.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..=|++.|.+|+||||+..+|...
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            334667899999999999998643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.05  E-value=0.022  Score=48.45  Aligned_cols=21  Identities=52%  Similarity=0.569  Sum_probs=18.5

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|++|+||||+...|...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            678899999999999998654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.69  E-value=0.025  Score=48.67  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|+||+||||+..+|..+
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678899999999999999753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.027  Score=47.53  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.||+||||+..+|...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.45  E-value=0.039  Score=47.24  Aligned_cols=28  Identities=36%  Similarity=0.452  Sum_probs=22.4

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .+.+..=|++.|.+|+||||+..++...
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3445566888999999999999998653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.43  E-value=0.033  Score=47.56  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=18.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|++|+||||+...+....
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5667999999999999997654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.032  Score=49.43  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      -|+|.|++||||||+..+|....
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37889999999999999998753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.33  E-value=0.031  Score=54.07  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..|.+-+|.|+|||||||+..+|.=
T Consensus        23 ~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          23 GESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3466888899999999999999853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.032  Score=51.34  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ..+.+|+|+||+||||++-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999998765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.07  E-value=0.05  Score=51.21  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      ...+|.|.|..|.||||+|+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.07  E-value=0.038  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~   29 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDS   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            6788999999999999998653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.91  E-value=0.043  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.039  Score=47.04  Aligned_cols=22  Identities=32%  Similarity=0.592  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.045  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      ..+++|.|||+|||||+.+.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46899999999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=0.033  Score=51.80  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ....++.|+||+||||+...|....
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchh
Confidence            4567788999999999999997654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.042  Score=47.76  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+..++...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            667899999999999999854

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.65  E-value=0.044  Score=47.36  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEecCCCCCHHHHHHHHHHh
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .|++.|.+|+||||+.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999854

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.045  Score=47.15  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+..++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            677899999999999998754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.51  E-value=0.044  Score=50.81  Aligned_cols=16  Identities=38%  Similarity=0.650  Sum_probs=12.3

Q ss_pred             EEEecCCCCCHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLK  230 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~  230 (516)
                      ++|.|+|||||||++-
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            3455999999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.046  Score=46.96  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |+|.|.+|+||||+..++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999999764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.05  Score=46.44  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5677999999999999998643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.30  E-value=0.052  Score=46.49  Aligned_cols=22  Identities=18%  Similarity=0.560  Sum_probs=18.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+...-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            5678999999999999987543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.054  Score=46.73  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999987643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.052  Score=53.51  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=17.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .+.+|.|+||+||||+...+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHH
Confidence            3788899999999998866543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.052  Score=46.54  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+.+.+....
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6778999999999999998654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.17  E-value=0.034  Score=48.17  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .+-.=|++.|.+|+||||+..++..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3445577899999999999998753

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.13  E-value=0.11  Score=46.59  Aligned_cols=43  Identities=9%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeCc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD  251 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~-~~~~~~~av~IdaD  251 (516)
                      ...|.-+++.|+||+||||+|..++.... .....++...|+++
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~   55 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   55 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence            34577899999999999999999987541 11223467777665

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.055  Score=46.18  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             EEEEecCCCCCHHHHHHHHHHh
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~  235 (516)
                      .|++.|.||+||||+..+|...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4788999999999999999754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.01  E-value=0.051  Score=50.99  Aligned_cols=17  Identities=47%  Similarity=0.786  Sum_probs=12.9

Q ss_pred             EEEecCCCCCHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKD  231 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~  231 (516)
                      ++|.|+|||||||++-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            44568899999987643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.01  E-value=0.056  Score=49.87  Aligned_cols=22  Identities=41%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEEecCCCCCHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .++++.|||.|||||+.+.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999998743

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.99  E-value=0.048  Score=49.08  Aligned_cols=18  Identities=17%  Similarity=0.322  Sum_probs=14.5

Q ss_pred             HHHHHHhCCCcEEEeCCC
Q 010176          290 LLVTALNEGRDVIMDGTL  307 (516)
Q Consensus       290 la~~aL~~G~sVIvDaTf  307 (516)
                      .+...+++|+.+|+|...
T Consensus        90 ~i~~~~~~gk~~lldid~  107 (199)
T d1kjwa2          90 SVREVAEQGKHCILDVSA  107 (199)
T ss_dssp             HHHHHHHTTCEEEECCCT
T ss_pred             EEEehhcCCCcccccccc
Confidence            566778899999999654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.059  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+..++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            778899999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.84  E-value=0.063  Score=45.44  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.061  Score=45.79  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.062  Score=45.98  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+|+||||+..++...-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.72  E-value=0.062  Score=46.60  Aligned_cols=22  Identities=18%  Similarity=0.558  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+...-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.077  Score=45.67  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+|||||..++....
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            346778999999999999998654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.68  E-value=0.041  Score=47.34  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=|++.|.+|+||||+..++....
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            346788999999999999987543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.09  Score=45.88  Aligned_cols=38  Identities=13%  Similarity=0.071  Sum_probs=27.3

Q ss_pred             EEEEecC-CCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGG-MGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~-sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      -++|+|- +|.||||++-.|+..+.-  .+....++|+|.-
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~--~G~rVl~id~d~~   41 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKPVAS   41 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECSEEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEECcccc
Confidence            3566776 599999999999877622  2346778888753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.071  Score=45.61  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7889999999999999987643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.071  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+|+||||+..++...-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7889999999999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.34  E-value=0.052  Score=47.00  Aligned_cols=20  Identities=30%  Similarity=0.263  Sum_probs=17.6

Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~  234 (516)
                      |.+.|+|++||||+..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67889999999999999853

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.074  Score=45.34  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998644

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.071  Score=45.46  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5677999999999999988643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.055  Score=45.97  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .+.=|++.|.|++|||||.++|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            334477789999999999999854

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.073  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6777999999999999998653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.075  Score=45.47  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6778999999999999987643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.06  E-value=0.12  Score=45.84  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .+.+.+|-.|+||||++..|+..+.  ..+....+||.|-..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la--~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEeCCCCC
Confidence            4567779999999999999887663  234567899998654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.05  E-value=0.078  Score=45.18  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6677999999999999998644

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.98  E-value=0.11  Score=44.63  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHh
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~  235 (516)
                      +.=|.+.|.+|+||||+..+|...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            345778899999999999999754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.96  E-value=0.073  Score=46.77  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+|+||||+...+....
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            6677999999999999998643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.91  E-value=0.077  Score=52.06  Aligned_cols=34  Identities=29%  Similarity=0.598  Sum_probs=24.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ++|.|++|||||++...+....-.  .+...+++|+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~--~g~~~iiiD~   86 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDP   86 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence            688899999999998877665421  1335666765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.082  Score=45.27  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5778999999999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.87  E-value=0.22  Score=46.03  Aligned_cols=54  Identities=26%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176          208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK  266 (516)
Q Consensus       208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~  266 (516)
                      ....|.  +|.|++|+||+++|+.|-.....  .....+.++...+. .......+++.
T Consensus        21 ~~~~pv--lI~Ge~GtGK~~~A~~ih~~s~~--~~~~~~~~~~~~~~-~~~~~~~lfg~   74 (247)
T d1ny5a2          21 CAECPV--LITGESGVGKEVVARLIHKLSDR--SKEPFVALNVASIP-RDIFEAELFGY   74 (247)
T ss_dssp             TCCSCE--EEECSTTSSHHHHHHHHHHHSTT--TTSCEEEEETTTSC-HHHHHHHHHCB
T ss_pred             CCCCCE--EEECCCCcCHHHHHHHHHHhcCC--cccccccchhhhhh-hcccHHHhcCc
Confidence            345564  55699999999999999765432  22344556554443 23345556663

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.83  E-value=0.027  Score=47.42  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.||+||||+..+|..+-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6788999999999999997653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.79  E-value=0.023  Score=53.15  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +...++.|+||+||||+..+|..+.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            4556788999999999999998654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.085  Score=45.14  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+...+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            577899999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.65  E-value=0.058  Score=46.53  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |.+.|.||+||||+...|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            667899999999999998643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.085  Score=44.62  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5677999999999999998643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.085  Score=45.40  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=18.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+|+||||+..++....
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            4566999999999999998754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.086  Score=44.83  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=18.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5667999999999999987643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.54  E-value=0.083  Score=45.77  Aligned_cols=19  Identities=42%  Similarity=0.573  Sum_probs=17.2

Q ss_pred             EEEecCCCCCHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIM  233 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La  233 (516)
                      |++.|.+|+||||+..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6788999999999999993

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.11  Score=47.16  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      =+++.|+||.|||+++..|+...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            35778999999999999999865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.092  Score=45.48  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      =|++.|.+|+||||+..++....
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36888999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.41  E-value=0.094  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=18.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6778999999999999987643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.27  E-value=0.15  Score=46.75  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK  254 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir  254 (516)
                      .|.|+|--|.||||++-.|+..+.  ..+....+||.|--.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA--~~G~rVllID~D~q~   41 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTS
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH--hCCCcEEEEecCCCC
Confidence            466688999999999999887763  234567899999643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.24  E-value=0.099  Score=44.55  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5677999999999999998754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.11  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .=+++.|+||+|||+++..|+...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            345678999999999999999765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.04  E-value=0.092  Score=47.45  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=18.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+||||||+.+++....
T Consensus         9 illlG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5778999999999999986543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.94  E-value=0.061  Score=46.26  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=7.7

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+..+|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567799999999999988753

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.90  E-value=0.1  Score=46.64  Aligned_cols=29  Identities=21%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV  248 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I  248 (516)
                      |++|.|++.||||.+|..++...      +..++|
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~------~~~~Yi   29 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA------PQVLYI   29 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC------SSEEEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcC------CCcEEE
Confidence            57999999999999999987543      245666

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.11  Score=44.24  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.4

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6778999999999999998754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.51  E-value=0.12  Score=48.12  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      ..+.-|++.|.+|+||||+...|..+-
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            345668888999999999999998643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.11  Score=45.13  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++....
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            7889999999999999988654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.29  E-value=0.12  Score=44.17  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+...+....
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5677999999999999998643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.27  E-value=0.16  Score=41.75  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ...++.+|.|||||+++-.+..+.+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            5678899999999999877666553

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.08  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=16.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+..++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            667799999999999987654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.27  Score=41.49  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=25.7

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..|-++.|||.|||||-.-..+.....  .+...+++++
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~~~--~g~~v~~ikp   38 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKY   38 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEE
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHHHH--cCCcEEEEec
Confidence            467899999999999966665554422  2345667755

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.01  E-value=0.13  Score=44.19  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHh
Q 010176          215 LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~  235 (516)
                      |++.|.+|+||||+...+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            677899999999999998753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.85  E-value=0.21  Score=44.17  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      +-+.++-.|+||||++-.|+..+.  ..+....+||.|.-
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la--~~g~~VlliD~D~~   42 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTT
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeCCCC
Confidence            446668899999999999987662  23457789999854

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.80  E-value=0.26  Score=42.11  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=28.6

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      .....|-++.|||.|||||-.-+....+..  .+....++++
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~~~--~g~~vl~i~~   43 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKP   43 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHhhh--cCCcEEEEEe
Confidence            456789999999999999977766655532  1335666654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.14  Score=44.72  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6677999999999999998754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.21  E-value=0.2  Score=45.38  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      +.|. |.|.|.+++|||||...|....
T Consensus         4 r~p~-IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPI-VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCE-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCE-EEEEeCCCccHHHHHHHHHhhc
Confidence            4577 6777999999999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.82  E-value=0.17  Score=43.91  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         5 ivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5678999999999999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.68  E-value=0.18  Score=43.26  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|.+|+||||+..++....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6778999999999999997654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.36  Score=46.10  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCc-eE-EEeCcccccchHHHHHHhcC----CCCChhhHHHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AV-VVEADAFKETDVIYRALSSK----GHHDDMLQTAELVHQSSTDA  286 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~-av-~IdaD~ir~sD~irk~L~~~----~~~~~~~y~~e~v~~~~~~~  286 (516)
                      .=++|-|++|+||||++..++......  ... .+ +.-.++..+.-..+.++...    ....+   .+.. +..+...
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~~--~~~~v~~~~~iger~~ev~~~~~~~~~~vv~~t~d~---~~~~-r~~~~~~  117 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAYN--HPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDE---PASR-HVQVAEM  117 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHH--CTTSEEEEEEEEECHHHHHHHHHHCSSEEEEEETTS---CHHH-HHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEeeceeHHHHHhHHhhcceEEEeccCCC---chhH-HHHHHHH
Confidence            335666889999999999998744210  011 22 22223332221122222111    00011   1111 3334445


Q ss_pred             HHHHHHHHHhCCCcEE--EeCCCC
Q 010176          287 ASSLLVTALNEGRDVI--MDGTLS  308 (516)
Q Consensus       287 a~~la~~aL~~G~sVI--vDaTfs  308 (516)
                      +...++.....|++|+  +|....
T Consensus       118 a~~iAEyfrd~G~dVLli~Dsltr  141 (289)
T d1xpua3         118 VIEKAKRLVEHKKDVIILLDSITR  141 (289)
T ss_dssp             HHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             HHHHHHHHHHhccCceeecCcHHH
Confidence            6678888889999864  555443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.36  E-value=0.23  Score=44.56  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhc
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l  236 (516)
                      .-|.+.|-+++|||||..+|....
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            448889999999999999998654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.35  E-value=0.19  Score=42.78  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.0

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |+|.|..|+||||+..++....
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            5777999999999999997654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.2  Score=43.50  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHhc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l  236 (516)
                      |++.|.+|+||||+..++...-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6778999999999999998754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.31  E-value=0.15  Score=41.00  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=16.6

Q ss_pred             CCCEEEEEecCCCCCHHHHHH
Q 010176          210 RSPVLLLMGGGMGAGKSTVLK  230 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~  230 (516)
                      ++....++.+++|||||+.+-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            345667889999999997764

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.87  E-value=0.12  Score=48.54  Aligned_cols=60  Identities=2%  Similarity=0.048  Sum_probs=37.9

Q ss_pred             Cccccc---ccccCCc--cccccccccchhhhhhhhcccccccccccchhcccccccccCCchhHHHHHHHHHhh
Q 010176           96 CEDNIY---EYFSKEA--EPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQ  165 (516)
Q Consensus        96 cHGDLh---~~~~~~~--~~fD~cIEF~~~l~R~il~d~AF~~~~~~~~~~l~MDle~~g~~~la~~~l~~yl~~  165 (516)
                      ||||+|   +++++.-  .++|    |++---.|.++|+|.      .+....++-+.....+....||+.|.+.
T Consensus       186 IHgDl~~dNvl~~~~~v~gvID----F~~~~~~~~~~DLAi------~~~~~~~~~~~~~~~~~~~afl~GY~~~  250 (316)
T d2ppqa1         186 IHADLFQDNVFFLGDELSGLID----FYFACNDLLAYDVSI------CLNAWCFEKDGAYNVTKGKALLEGYQSV  250 (316)
T ss_dssp             ECSCCCGGGEEEETTEEEEECC----CTTCEEEEHHHHHHH------HHHHHSBCTTSCBCHHHHHHHHHHHHTT
T ss_pred             ccCCcchhhhhcccccceeEec----ccccccchhhhhHHH------HHHHHhhcchhhhHHHHHHHHHHHHHhc
Confidence            899999   6776642  3555    665331222999988      2333334333333457788999999877

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.60  E-value=0.23  Score=42.91  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=18.4

Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~  234 (516)
                      |.+.|.|+|||||+..+|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78899999999999999974

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.52  E-value=0.21  Score=45.52  Aligned_cols=29  Identities=17%  Similarity=0.074  Sum_probs=24.7

Q ss_pred             CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      .++...+++.|||++|||+++..|..-++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            34557888899999999999999998873

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.90  E-value=0.47  Score=40.23  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176          212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA  250 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida  250 (516)
                      ..|-++.|||.|||||-.-.....+..  .+...+++++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~--~~~kv~~ikp   38 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKP   38 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHH--CCCcEEEEEE
Confidence            467889999999999944444443321  1335667766

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.55  E-value=0.37  Score=42.60  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=22.6

Q ss_pred             cCCCCEE-EEEecCCCCCHHHHHHHHHHh
Q 010176          208 SERSPVL-LLMGGGMGAGKSTVLKDIMKE  235 (516)
Q Consensus       208 ~~~~P~L-Ili~G~sGSGKSTlA~~La~~  235 (516)
                      +..+|.+ |.+.|-..+|||||+..|...
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHhh
Confidence            3456754 889999999999999999743

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.53  E-value=0.35  Score=45.36  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=23.5

Q ss_pred             CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176          210 RSPVLLLMGGGMGAGKSTVLKDIMKESF  237 (516)
Q Consensus       210 ~~P~LIli~G~sGSGKSTlA~~La~~l~  237 (516)
                      ++-.++++.||+++||||++..|..-++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4456777789999999999999998774

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=83.28  E-value=10  Score=30.84  Aligned_cols=137  Identities=16%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 010176          213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV  292 (516)
Q Consensus       213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~  292 (516)
                      +||++-||--+=|||++..|.+++..       .+|..    ++-+..|  +|              .+.+.+    ...
T Consensus         1 tliilegpdccfkstvaaklskelky-------piikg----ssfelak--sg--------------neklfe----hfn   49 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKY-------PIIKG----SSFELAK--SG--------------NEKLFE----HFN   49 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTC-------CEEEC----CCHHHHH--HC--------------HHHHHH----HHH
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcC-------ceecC----chhhhhh--cc--------------CHHHHH----HHH
Confidence            47899999999999999999999843       55622    1211111  01              122222    111


Q ss_pred             HHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCce
Q 010176          293 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR  372 (516)
Q Consensus       293 ~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~  372 (516)
                       -|...-+||+|--.-.    .  .-.|+..        ..|.     ..+|+-...+++.             .++  .
T Consensus        50 -kladednviidrfvys----n--lvyakkf--------kdys-----ilterqlrfiedk-------------ika--k   94 (164)
T d2axpa1          50 -KLADEDNVIIDRFVYS----N--LVYAKKF--------KDYS-----ILTERQLRFIEDK-------------IKA--K   94 (164)
T ss_dssp             -HHTTCCSEEEESCHHH----H--HHHTTTB--------SSCC-----CCCHHHHHHHHHH-------------HTT--T
T ss_pred             -hhccccceeeehhhhh----h--hHHHhhc--------ccce-----ehhHHHHHHHHHH-------------hhh--h
Confidence             2345679999943210    0  0111111        1222     2333333333221             111  2


Q ss_pred             EEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHh
Q 010176          373 IELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA  415 (516)
Q Consensus       373 I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~  415 (516)
                      -+++++.+||.+-..|..-|.-+-=..-.+++++.-|+..+.|
T Consensus        95 akvvylhadpsvikkrlrvrgdeyiegkdidsilelyrevmsn  137 (164)
T d2axpa1          95 AKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSN  137 (164)
T ss_dssp             EEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHHHHT
T ss_pred             eeEEEEecChHHHHHHhccccccccccCCHHHHHHHHHHHHhc
Confidence            4678999999999888888764322222467788888777653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.89  E-value=0.42  Score=44.20  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=27.3

Q ss_pred             EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176          215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF  253 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i  253 (516)
                      |.+.|--|.||||++-.|+..+.  ..+....+||.|--
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA--~~G~rVLlID~DpQ   41 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEecCCC
Confidence            45588999999998888876652  22346788999864

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=0.14  Score=48.81  Aligned_cols=56  Identities=5%  Similarity=-0.072  Sum_probs=33.1

Q ss_pred             CCccccc---ccccCCccccccccccchhhhhhhhcccccccccccchhcccccccccCCchhHHHHHHHHHhh
Q 010176           95 GCEDNIY---EYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQ  165 (516)
Q Consensus        95 ~cHGDLh---~~~~~~~~~fD~cIEF~~~l~R~il~d~AF~~~~~~~~~~l~MDle~~g~~~la~~~l~~yl~~  165 (516)
                      -||||+|   +++++++.++|    |++----+-++|+|-          ++.+-. ......-..||++|.+.
T Consensus       194 liHgDlh~~NvL~~~~~~~ID----Fdd~~~g~~~~DLa~----------~l~~~~-~~~~~~~~~~l~GY~~~  252 (325)
T d1zyla1         194 RLHGDCHAGNILWRDGPMFVD----LDDARNGPAVQDLWM----------LLNGDK-AEQRMQLETIIEAYEEF  252 (325)
T ss_dssp             ECCSSCSGGGEEESSSEEECC----CTTCCEECTTHHHHT----------TCCSSH-HHHHHHHHHHHHHHTTT
T ss_pred             eecCCCCcccEEEeCCceEEe----chhcccCcHHHHHHH----------hccccc-cCHHHHHHHHHHHHHhc
Confidence            3999999   78888776555    665220111777765          333211 12223345689999876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.38  E-value=0.41  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCCHHHHHHHHHH
Q 010176          211 SPVLLLMGGGMGAGKSTVLKDIMK  234 (516)
Q Consensus       211 ~P~LIli~G~sGSGKSTlA~~La~  234 (516)
                      .|.=|.+.|.||+||||+..+|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            467799999999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.19  E-value=0.3  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=17.6

Q ss_pred             EEecCCCCCHHHHHHHHHHhc
Q 010176          216 LMGGGMGAGKSTVLKDIMKES  236 (516)
Q Consensus       216 li~G~sGSGKSTlA~~La~~l  236 (516)
                      ++.|+||.|||+++..|+...
T Consensus        47 llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHHHH
Confidence            445999999999999888765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=0.32  Score=47.04  Aligned_cols=19  Identities=26%  Similarity=0.281  Sum_probs=15.6

Q ss_pred             CEEEEEecCCCCCHHHHHH
Q 010176          212 PVLLLMGGGMGAGKSTVLK  230 (516)
Q Consensus       212 P~LIli~G~sGSGKSTlA~  230 (516)
                      .-+-++-|+||+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3456788999999999884

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.18  E-value=0.38  Score=42.13  Aligned_cols=17  Identities=29%  Similarity=0.341  Sum_probs=14.4

Q ss_pred             EEEecCCCCCHHHHHHH
Q 010176          215 LLMGGGMGAGKSTVLKD  231 (516)
Q Consensus       215 Ili~G~sGSGKSTlA~~  231 (516)
                      +++++|+|||||+++..
T Consensus        43 ~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             EEEECSSHHHHHHHHHH
T ss_pred             EEEEcCCCCchhHHHHH
Confidence            67899999999998743