Citrus Sinensis ID: 010187

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------

MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRPTV

cEEEEcccccEEEEEccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHcccccccccEEEEEccEEEccccHHHHcccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccHHHHcHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHccccEEEccccccccccccccHHHHHHHccccEEEEcccccccccccccccccccc

cEEEEcccccEEEEEEcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHcccccccccccccccccEEEEEEEcHHHHHEEEEHHHHHcccccccEEEEEEEcccccHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcccccccEEEEEcccccccccccccHHccccccccHHHHHcccccHHHHHcccEEEEHHHHHHccHHHHHHHHHHHHHccccEEEEccccccHEEEEcccccccccccEEcccccccccccHHHccccEEEEEccccccHHHHccccccccc

mkfyisttgikrvtisntgtgkrssapaaalagrripssrtlLPVVLVLGIVLPFLFVRVAFLVLESSAVCssslgcigrrifsgsdtSLKLREELTRALIEAkdgsgngggriqGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLashgvpkslHCLCLKLAEEYAVNAMarsrlpspeyvshltdpsfhhVVLLTDNVLAASVVVSStvqnsarpeKLVFHIVtdkktytpmhsWFAINSFRSAVVEVKglhqydwsqEVNVGVKEMLEAHRLIWSHYYknlkhedfeyegenrrclevlspsCLSLMNHLRiyipelfpdlnkilfldddvVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpgrkykdylnfsypiissnfdhdhcawlygmnvldleAWRRTNITATYHKWLKLNLKSglelwqpgalppallaldgnvhpidpswhvaeLGQRSLEAHEETLKSAAVLHfsgpakpwleiglpekrptv

mkfyisttgikrvtisntgtgkrssapaaalagrripssrtLLPVVLVLGIVLPFLFVRVAFLVLESSAVcssslgcigrrifsgsdtslKLREELTRALIeakdgsgngggriQGTLDSFNELVKEVtskrqdikAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSstvqnsarpeklVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLhfsgpakpwleiglpekrptv

MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTllpvvlvlgivlpflfvRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNvlaasvvvsstvqnsaRPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQpgalppallalDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRPTV

***YISTTGIKRV*************************SRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLR*ELTRALI****************LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM**********ESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSL******LKSAAVLHFSGPAKPWLEI*********

*KFY*S*TG****************************SSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFS************************************FNELVKEVTSKRQDIKAFAFKTKAMLL************ESIYWHLASHGVPKSLHCLCLKLAEEYA********************PSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRPT*

MKFYISTTGIKRVTISNT***************RRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM*********RESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRPTV

MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLK***********RCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRPTV

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		516	2.2.26 [Sep-21-2011]
Q8L4B0		540	Probable galacturonosyltr	yes	no	0.992	0.948	0.682	0.0
Q8GWT1		532	Probable galacturonosyltr	no	no	0.978	0.949	0.454	1e-119
Q0WV13		533	Probable galacturonosyltr	no	no	0.978	0.947	0.450	1e-117
Q9FH36		535	Probable galacturonosyltr	no	no	0.835	0.805	0.448	1e-108
Q93ZX7		616	Probable galacturonosyltr	no	no	0.782	0.655	0.381	2e-77
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.734	0.563	0.375	1e-76
Q0WQD2		680	Probable galacturonosyltr	no	no	0.713	0.541	0.402	7e-74
Q949Q1		537	Probable galacturonosyltr	no	no	0.722	0.694	0.383	2e-73
Q9LSG3		559	Galacturonosyltransferase	no	no	0.678	0.626	0.385	2e-72
Q9SKT6		536	Probable galacturonosyltr	no	no	0.742	0.714	0.394	7e-70

>sp\|Q8L4B0\|GAUTF_ARATH Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1	Back alignment and function desciption

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/520 (68%), Positives = 418/520 (80%), Gaps = 8/520 (1%)

Query: 1   MKFYISTTGIKRVTISN-----TGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPF 55
           MKFYIS TGIK+VTISN            +A AAALA RR  SSRTLL ++L+L IVLPF
Sbjct: 1   MKFYISATGIKKVTISNPGVGIGKGSGGCAAAAAALAARRF-SSRTLLLLLLLLAIVLPF 59

Query: 56  LFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGR-I 114
           +FVR AFLVLES++VC S L C+G R+F G DTSLK+ EELTRAL+E      +  GR  
Sbjct: 60  IFVRFAFLVLESASVCDSPLDCMGLRLFRGGDTSLKIGEELTRALVEETTDHQDVNGRGT 119

Query: 115 QGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKS 174
           +G+L+SF++LVKE+T KR+DI+AFA  TK MLL+ME +VQS++  E +YWHLASHG+PKS
Sbjct: 120 KGSLESFDDLVKEMTLKRRDIRAFASVTKKMLLQMERKVQSAKHHELVYWHLASHGIPKS 179

Query: 175 LHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNS 234
           LHCL L+L EEY+VNAMAR RLP PE VS LTDPSFHH+VLLTDNVLAASVV+SSTVQN+
Sbjct: 180 LHCLSLRLTEEYSVNAMARMRLPPPESVSRLTDPSFHHIVLLTDNVLAASVVISSTVQNA 239

Query: 235 ARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHR 294
             PEK VFHIVTDKKTYTPMH+WFAINS  S VVEVKGLHQYDW QEVN  V+EML+ HR
Sbjct: 240 VNPEKFVFHIVTDKKTYTPMHAWFAINSASSPVVEVKGLHQYDWPQEVNFKVREMLDIHR 299

Query: 295 LIWSHYYKNLKHEDFEY-EGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDD 353
           LIW  +Y+NLK  DF + EG + + L+ L+PSCL+L+NHLRIYIP+LFPDLNKI+ LDDD
Sbjct: 300 LIWRRHYQNLKDSDFSFVEGTHEQSLQALNPSCLALLNHLRIYIPKLFPDLNKIVLLDDD 359

Query: 354 VVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAW 413
           VVVQ DLSSL E DLNGKVVGAVV S CGDNCCPGRKYKDY NFS+P+ISSN   + CAW
Sbjct: 360 VVVQSDLSSLWETDLNGKVVGAVVDSWCGDNCCPGRKYKDYFNFSHPLISSNLVQEDCAW 419

Query: 414 LYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWH 473
           L GMNV DL+AWR+TNIT  Y  WL+L+++SGL+LWQPGALPP LLA  G    ++PSWH
Sbjct: 420 LSGMNVFDLKAWRQTNITEAYSTWLRLSVRSGLQLWQPGALPPTLLAFKGLTQSLEPSWH 479

Query: 474 VAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKR 513
           VA LG RS+++ +E LKSA+VLHFSGPAKPWLEI  PE R
Sbjct: 480 VAGLGSRSVKSPQEILKSASVLHFSGPAKPWLEISNPEVR 519

May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q8GWT1\|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1	Back alignment and function description

>sp\|Q0WV13\|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1	Back alignment and function description

>sp\|Q9FH36\|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1	Back alignment and function description

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		516
255558712		535	Glycosyltransferase QUASIMODO1, putative	0.986	0.951	0.747	0.0
225446879		528	PREDICTED: probable galacturonosyltransf	0.980	0.958	0.752	0.0
147794434		528	hypothetical protein VITISV_043869 [Viti	0.976	0.954	0.753	0.0
224131384		531	glycosyltransferase [Populus trichocarpa	0.982	0.954	0.748	0.0
356526995		525	PREDICTED: probable galacturonosyltransf	0.970	0.954	0.709	0.0
356567408		525	PREDICTED: probable galacturonosyltransf	0.970	0.954	0.701	0.0
22331857		540	alpha-1,4-galacturonosyltransferase [Ara	0.992	0.948	0.682	0.0
297820714		538	GAUT15 [Arabidopsis lyrata subsp. lyrata	0.990	0.949	0.680	0.0
7630074		537	putative protein [Arabidopsis thaliana]	0.986	0.947	0.678	0.0
356499376		522	PREDICTED: probable galacturonosyltransf	0.959	0.948	0.658	0.0

>gi\|255558712\|ref\|XP_002520380.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223540427\|gb\|EEF41996.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/514 (74%), Positives = 441/514 (85%), Gaps = 5/514 (0%)

Query: 1   MKFYISTTGIKRVTISNTGTGKRSSAPAAAL---AGRRIPSSRTLLPVVLVLGIVLPFLF 57
           MKFYISTTGIKRVTISN G G       +++   AGRRI S RTLLPV+LVL IVLPFLF
Sbjct: 1   MKFYISTTGIKRVTISNPGCGGGGGGKGSSIKVAAGRRI-SGRTLLPVLLVLAIVLPFLF 59

Query: 58  VRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGT 117
           VR+AFLVLES++ C+SS+ C   R F GSDTS+KLREELTRAL+EAK+ SG    ++  +
Sbjct: 60  VRIAFLVLESASACNSSVDCRPWRFFGGSDTSMKLREELTRALLEAKE-SGIDDEKMDDS 118

Query: 118 LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHC 177
             SFNELVKE+TS RQDIKAFAF+TKAML KMEH+VQ +RQRESI+WHLASHG+PKSLHC
Sbjct: 119 TASFNELVKEMTSTRQDIKAFAFRTKAMLSKMEHKVQLARQRESIFWHLASHGIPKSLHC 178

Query: 178 LCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARP 237
           LCLKL+EEYAVNA+ARSRLP PEYVS L DPSFHHVVL+TDNVLAASVV+SSTVQNS  P
Sbjct: 179 LCLKLSEEYAVNAIARSRLPPPEYVSRLADPSFHHVVLITDNVLAASVVISSTVQNSLSP 238

Query: 238 EKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIW 297
           EKLVFHI+TDKKTYTPMH+WFAIN+ +SA VE+KGLHQYDWS+EVN+GVKEMLE HRLIW
Sbjct: 239 EKLVFHIITDKKTYTPMHAWFAINTIKSAAVEIKGLHQYDWSEEVNIGVKEMLETHRLIW 298

Query: 298 SHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQ 357
           SHYY N+K EDF +EGE++R LE LSPSCLSL+NHLRIY+PELFPDLNKI+FLDDDVVVQ
Sbjct: 299 SHYYTNMKEEDFLHEGEHKRSLEALSPSCLSLLNHLRIYLPELFPDLNKIVFLDDDVVVQ 358

Query: 358 HDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417
           HD+SSL E+DLN KVVGAVV S CG+NCCP R+YKDYLNFS+ IISSN D + CAWLYGM
Sbjct: 359 HDISSLWEMDLNEKVVGAVVDSWCGENCCPARRYKDYLNFSHSIISSNLDPERCAWLYGM 418

Query: 418 NVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAEL 477
           NV DL+ WRR NIT  YHKWLK + KSGL+LWQPG LPPALLA +G+VHPIDPSWH+A L
Sbjct: 419 NVFDLDTWRRANITRNYHKWLKHSRKSGLDLWQPGVLPPALLAFEGHVHPIDPSWHLAGL 478

Query: 478 GQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPE 511
           G++  E   E L++AA+LHF+GPAKPWLEIG PE
Sbjct: 479 GRKPPEVRREILETAAILHFNGPAKPWLEIGFPE 512

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225446879\|ref\|XP_002279893.1\| PREDICTED: probable galacturonosyltransferase 15 [Vitis vinifera] gi\|296086324\|emb\|CBI31765.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147794434\|emb\|CAN67083.1\| hypothetical protein VITISV_043869 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224131384\|ref\|XP_002321071.1\| glycosyltransferase [Populus trichocarpa] gi\|222861844\|gb\|EEE99386.1\| glycosyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356526995\|ref\|XP_003532100.1\| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|356567408\|ref\|XP_003551912.1\| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|22331857\|ref\|NP_191438.2\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi\|75153682\|sp\|Q8L4B0.1\|GAUTF_ARATH RecName: Full=Probable galacturonosyltransferase 15 gi\|20466464\|gb\|AAM20549.1\| putative protein [Arabidopsis thaliana] gi\|22136432\|gb\|AAM91294.1\| putative protein [Arabidopsis thaliana] gi\|332646311\|gb\|AEE79832.1\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297820714\|ref\|XP_002878240.1\| GAUT15 [Arabidopsis lyrata subsp. lyrata] gi\|297324078\|gb\|EFH54499.1\| GAUT15 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|7630074\|emb\|CAB88296.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356499376\|ref\|XP_003518517.1\| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		516
TAIR\|locus:2099049		540	GAUT15 "galacturonosyltransfer	0.992	0.948	0.626	1.5e-170
TAIR\|locus:2180947		532	GAUT14 "galacturonosyltransfer	0.978	0.949	0.406	5.6e-100
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.976	0.945	0.401	1.7e-98
TAIR\|locus:2157543		535	GAUT12 "galacturonosyltransfer	0.848	0.818	0.42	1.5e-90
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.781	0.654	0.349	5.2e-65
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.742	0.714	0.357	3.7e-64
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.734	0.563	0.335	4.2e-63
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.734	0.705	0.337	2.7e-61
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.713	0.541	0.360	1.5e-60
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.808	0.745	0.335	5.7e-59

TAIR\|locus:2099049 GAUT15 "galacturonosyltransferase 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1658 (588.7 bits), Expect = 1.5e-170, P = 1.5e-170
 Identities = 326/520 (62%), Positives = 383/520 (73%)

Query:     1 MKFYISTTGIKRVTISNTGTG--KRS---SAPAAALAGRRIPSSRTXXXXXXXXXXXXXX 55
             MKFYIS TGIK+VTISN G G  K S   +A AAALA RR  SSRT              
Sbjct:     1 MKFYISATGIKKVTISNPGVGIGKGSGGCAAAAAALAARRF-SSRTLLLLLLLLAIVLPF 59

Query:    56 XXXRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGR-I 114
                R AFLVLES++VC S L C+G R+F G DTSLK+ EELTRAL+E      +  GR  
Sbjct:    60 IFVRFAFLVLESASVCDSPLDCMGLRLFRGGDTSLKIGEELTRALVEETTDHQDVNGRGT 119

Query:   115 QGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKS 174
             +G+L+SF++LVKE+T KR+DI+AFA  TK MLL+ME +VQS++  E +YWHLASHG+PKS
Sbjct:   120 KGSLESFDDLVKEMTLKRRDIRAFASVTKKMLLQMERKVQSAKHHELVYWHLASHGIPKS 179

Query:   175 LHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNXXXXXXXXXXXXXXX 234
             LHCL L+L EEY+VNAMAR RLP PE VS LTDPSFHH+VLLTDN               
Sbjct:   180 LHCLSLRLTEEYSVNAMARMRLPPPESVSRLTDPSFHHIVLLTDNVLAASVVISSTVQNA 239

Query:   235 XRPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHR 294
               PEK VFHIVTDKKTYTPMH+WFAINS  S VVEVKGLHQYDW QEVN  V+EML+ HR
Sbjct:   240 VNPEKFVFHIVTDKKTYTPMHAWFAINSASSPVVEVKGLHQYDWPQEVNFKVREMLDIHR 299

Query:   295 LIWSHYYKNLKHEDFEY-EGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDD 353
             LIW  +Y+NLK  DF + EG + + L+ L+PSCL+L+NHLRIYIP+LFPDLNKI+ LDDD
Sbjct:   300 LIWRRHYQNLKDSDFSFVEGTHEQSLQALNPSCLALLNHLRIYIPKLFPDLNKIVLLDDD 359

Query:   354 VVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAW 413
             VVVQ DLSSL E DLNGKVVGAVV S CGDNCCPGRKYKDY NFS+P+ISSN   + CAW
Sbjct:   360 VVVQSDLSSLWETDLNGKVVGAVVDSWCGDNCCPGRKYKDYFNFSHPLISSNLVQEDCAW 419

Query:   414 LYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQXXXXXXXXXXXDGNVHPIDPSWH 473
             L GMNV DL+AWR+TNIT  Y  WL+L+++SGL+LWQ            G    ++PSWH
Sbjct:   420 LSGMNVFDLKAWRQTNITEAYSTWLRLSVRSGLQLWQPGALPPTLLAFKGLTQSLEPSWH 479

Query:   474 VAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKR 513
             VA LG RS+++ +E LKSA+VLHFSGPAKPWLEI  PE R
Sbjct:   480 VAGLGSRSVKSPQEILKSASVLHFSGPAKPWLEISNPEVR 519

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

TAIR\|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L4B0	GAUTF_ARATH	2, ., 4, ., 1, ., -	0.6826	0.9922	0.9481	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		516
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	0.0
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	1e-176
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	1e-149
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-112
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	1e-105
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-94
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	2e-94
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	1e-88
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	4e-84
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	5e-77
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	1e-57
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	2e-26
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	3e-15
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	4e-13
cd06432		248	cd06432, GT8_HUGT1_C_like, The C-terminal domain o	0.004

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

 Score =  945 bits (2445), Expect = 0.0
 Identities = 416/516 (80%), Positives = 456/516 (88%), Gaps = 5/516 (0%)

Query: 1   MKFYISTTGIKRVTISNTGTGKRSS---APAAALAGRRIPSSRTLLPVVLVLGIVLPFLF 57
           MKFYISTTGIK+VTISN G+GK S    A AAA A RR  S RTLLPV+L+L IVLPFLF
Sbjct: 1   MKFYISTTGIKKVTISNPGSGKGSGGCAAAAAAAAARRF-SGRTLLPVLLLLAIVLPFLF 59

Query: 58  VRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGT 117
           VR+AFLVLES++ C+S L CIG R+F GSDTSLKLREELTRAL+EAK+   +GG   +G+
Sbjct: 60  VRIAFLVLESASACNSPLDCIGLRLFGGSDTSLKLREELTRALVEAKEQ-DDGGRGTKGS 118

Query: 118 LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHC 177
            +SFN+LVKE+TS RQDIKAFAF+TKAMLLKME +VQS+RQRESIYWHLASHG+PKSLHC
Sbjct: 119 TESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSLHC 178

Query: 178 LCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARP 237
           LCLKLAEEYAVNAMARSRLP PE VS LTDPSFHHVVLLTDNVLAASVV+SSTVQN+A P
Sbjct: 179 LCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANP 238

Query: 238 EKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIW 297
           EKLVFHIVTDKKTYTPMH+WFAINS +SAVVEVKGLHQYDWSQEVNVGVKEMLE HRLIW
Sbjct: 239 EKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIW 298

Query: 298 SHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQ 357
           SHYY+NLK  DF++EG ++R LE LSPSCLSL+NHLRIYIPELFPDLNKI+FLDDDVVVQ
Sbjct: 299 SHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQ 358

Query: 358 HDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417
           HDLSSL ELDLNGKVVGAVV S CGDNCCPGRKYKDYLNFS+P+ISSN D + CAWLYGM
Sbjct: 359 HDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWLYGM 418

Query: 418 NVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSWHVAEL 477
           NV DL+AWRRTNIT  YHKWLKL+L SGL+LWQPGALPPALLA  G+VHPIDPSWHVA L
Sbjct: 419 NVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGL 478

Query: 478 GQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKR 513
           G R  E   E L+SAAVLHFSGPAKPWLEIG PE R
Sbjct: 479 GSRPPEVPREILESAAVLHFSGPAKPWLEIGFPEVR 514

Length = 535

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		516
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	100.0
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.98
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.92
PLN00176		333	galactinol synthase	99.91
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.77
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.04
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.92
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	96.45
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	88.76
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	82.39
PLN02769		629	Probable galacturonosyltransferase	81.93

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=8.4e-147  Score=1163.38  Aligned_cols=504  Identities=48%  Similarity=0.828  Sum_probs=475.4

Q ss_pred             CeEeeecCCeeeEEEccCCCCCCCcchhhhhcccccccccchHHHHHHHHHhhhHHHHHHHHHhhcCccCCCCCcCcccc
Q 010187            1 MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGR   80 (516)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (516)
                      ||++|| ||||||||++| +|++|+| |+|||+||+ ||||+||++|++||||||+||++|++||||+++||| +||+||
T Consensus         1 ~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~c~~-~~c~~~   75 (533)
T PLN02870          1 MQLHIS-PSMRSITISSS-NGFIDLM-KIKVAARHI-SYRTLFHTILILAFLLPFVFILTAVVTLEGVNKCSS-FDCLGR   75 (533)
T ss_pred             Cceeec-CccceEEEecC-CcHHHHH-HHHhhhccc-hhhhHHHHHHHHHHHHhHHHHhhhhhhhcccccCCc-cccccc
Confidence            899999 99999999997 9999999 999999999 999999999999999999999999999999999999 999999


Q ss_pred             c-----cccCCCcchHHHHHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 010187           81 R-----IFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQS  155 (516)
Q Consensus        81 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~ee~~~~  155 (516)
                      |     +||++|+. ++++|++++|.|++.+|.+.+++   +|+|+++++++|++.+|||+++++|||||++++|||+++
T Consensus        76 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~d~~---lp~s~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~  151 (533)
T PLN02870         76 RLGPRLLGRVDDSE-RLVRDFYKILNEVNTEEIPDGLK---LPDSFSQLVSDMKNNHYDAKTFAFVLRAMMEKFERELRE  151 (533)
T ss_pred             ccCccccCCCCchh-hhHHHHHHHHHHhcccccccccc---CChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9     66666655 89999999999999999999998   999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHhcCCCCcccchhHHHHHHHHHhchhhhcCCCCccccCCCCCCCcceEEEEeCCcchhHHHHHHHHhhcC
Q 010187          156 SRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSA  235 (516)
Q Consensus       156 ~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~e~~~~l~d~~~ihIv~~sDn~laasVvI~Siv~Ns~  235 (516)
                      +|+|++|++||||+|+|||||||+||||+|||+++.+++++|++|..|+++||+++|||++|||+||+||||||++.|++
T Consensus       152 ~~~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~  231 (533)
T PLN02870        152 SKFAELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSL  231 (533)
T ss_pred             HHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHHHHHHHHHHHHHHhhccCccccc---ccc
Q 010187          236 RPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDF---EYE  312 (516)
Q Consensus       236 ~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl~~l~~~~~i~~~y~~~~~~~~i---~~p  312 (516)
                      +|+++|||||||++||.+|++||++|++++|+|||+|+|+|+|++.+++||++|+|+.+.++.+||++......   ..|
T Consensus       232 ~p~~~VFHvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~  311 (533)
T PLN02870        232 KPEKIVFHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTP  311 (533)
T ss_pred             CccceEEEEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999876543221   145


Q ss_pred             hhhhhhcccCCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccCCCCCeEEEEecCCCCCCCCCCcccc
Q 010187          313 GENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYK  392 (516)
Q Consensus       313 ~~~~~~l~~~~~~~~S~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~~~~~~  392 (516)
                      +++.++++.++|+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||......+..++++
T Consensus       312 ~~~~~~l~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~  391 (533)
T PLN02870        312 RTFASKLQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFR  391 (533)
T ss_pred             hhhhcccccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhh
Confidence            66778899999999999999999999999999999999999999999999999999999999999996532222346778


Q ss_pred             cccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCCcCCCCCCChhhhhcCCcEEEcCCcc
Q 010187          393 DYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDGNVHPIDPSW  472 (516)
Q Consensus       393 ~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~~~~DQd~LN~~ll~F~~~~~~L~~~W  472 (516)
                      .|+||++|.+..+|+++.||||||||||||++||++++++++++|++++.++++.+||||+||++|++|+|++++||++|
T Consensus       392 ~YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rW  471 (533)
T PLN02870        392 NYFNFSHPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSW  471 (533)
T ss_pred             hhcccccchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHH
Confidence            89999999999999999999999999999999999999999999999876556789999999999999999999999999


Q ss_pred             ccccCCCCchhhhhhhcCCCeEEeeeCCCCCCccCCCCCCCC
Q 010187          473 HVAELGQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKRP  514 (516)
Q Consensus       473 N~~~lgy~~~~~~~~~i~~~~IIHy~G~~KPW~~~~~~~yr~  514 (516)
                      |++++||+... ..+.+++|+||||+|++|||++.++++||+
T Consensus       472 N~~gLgy~~~~-~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~  512 (533)
T PLN02870        472 HMLGLGYQSKT-NIESVKKAAVIHYNGQSKPWLEIGFEHLRP  512 (533)
T ss_pred             hcCCCCCcccc-cccccCCcEEEEECCCCCCccccCccchhH
Confidence            99999998754 567889999999999999999999999986

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		516
1ss9_A		311	Crystal Structural Analysis Of Active Site Mutant Q		4e-04
1g9r_A		311	Crystal Structure Of Galactosyltransferase Lgtc In		5e-04

>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311

Back alignment and structure

Iteration: 1

Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 24/188 (12%) Query: 327 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCC 386 +S+ + R+ + E D +K+L+LD DV+V+ L+ L + DL +GA C D Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA-----CIDLFV 133 Query: 387 PGRK-YKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLK-----L 440 ++ YK + + N G+ +++L+ WRR +I +W++ + Sbjct: 134 ERQEGYKQKIGMADGEYYFN---------AGVLLINLKKWRRHDIFKMSCEWVEQYKDVM 184 Query: 441 NLKSGLELWQXXXXXXXXXXXDGNVHPIDPSWHVAELGQRSLEA----HEETLKSAAVLH 496 + L N P + ++ R + T+ AV H Sbjct: 185 QYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSH 244 Query: 497 FSGPAKPW 504 + GPAKPW Sbjct: 245 YCGPAKPW 252

PyMOL of 1ss9

>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		516
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	1e-47
3tzt_A		276	Glycosyl transferase family 8; structural genomics	1e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  166 bits (422), Expect = 1e-47
 Identities = 51/318 (16%), Positives = 101/318 (31%), Gaps = 74/318 (23%)

Query: 212 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 269
            +V   D+       V   S         ++ FH++                        
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDA---------------------- 38

Query: 270 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 329
                    S+      +  + A+        + +     ++ G        L+   +S+
Sbjct: 39  -------GISEAN----RAAVAANLRGGGGNIRFIDVNPEDFAGFP------LNIRHISI 81

Query: 330 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 389
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +     D     +
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI-----DLFVERQ 136

Query: 390 K-YKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLEL 448
           + YK  +  +              +  G+ +++L+ WRR +I     +W++   K  ++ 
Sbjct: 137 EGYKQKIGMA---------DGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQY-KDVMQY 186

Query: 449 WQPGALPPALLALDGNVHPIDPSWHVAELG-------------QRSLEAHEETLKSAAVL 495
                L        G V   +  ++                           T+   AV 
Sbjct: 187 QDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVS 243

Query: 496 HFSGPAKPWLEIGLPEKR 513
           H+ GPAKPW         
Sbjct: 244 HYCGPAKPWHRDCTAWGA 261

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		516
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.92
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.91

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=5.7e-43  Score=351.88  Aligned_cols=246  Identities=17%  Similarity=0.205  Sum_probs=166.1

Q ss_pred             cceEEEEeCCcc--hhHHHHHHHHhhcCCCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHH
Q 010187          210 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK  287 (516)
Q Consensus       210 ~ihIv~~sDn~l--aasVvI~Siv~Ns~~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl  287 (516)
                      .+|||+++|+.+  .++|+|+|+++|+++ ++++|||++++++.+..+.....                           
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~---------------------------   56 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGED---------------------------   56 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHH---------------------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHH---------------------------
Confidence            589999999865  399999999999986 67999999999985432111000                           


Q ss_pred             HHHHHHHHHHHHhhccCcccccccchhhhhhcccCCCCccchhhHHHHhhccccC-CCCeEEEEecCeeeccCchHHhcc
Q 010187          288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL  366 (516)
Q Consensus       288 ~~l~~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~~S~~~y~Rf~LPellP-~ldKVLYLD~DvVV~~DLseLw~i  366 (516)
                               ...+.....+..++ ++.+. .  ....+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus        57 ---------~~~~~~~i~~~~~~-~~~~~-~--~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~  123 (276)
T 3tzt_A           57 ---------LKKFSYTLYPIRAT-DDLFS-F--AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT  123 (276)
T ss_dssp             ---------HHTTTCEEEEEECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred             ---------HHHcCCEEEEEEeC-HHHHh-c--CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence                     00000000000111 00011 0  1123578999999999999999 699999999999999999999999


Q ss_pred             CCCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCC
Q 010187          367 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL  446 (516)
Q Consensus       367 DL~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~  446 (516)
                      |++|+++|||+||....       ..+..+      ..+++...+|||||||||||++||+.++++++++|++++.. .+
T Consensus       124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~-~~  189 (276)
T 3tzt_A          124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHM-NL  189 (276)
T ss_dssp             CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred             CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccc-cc
Confidence            99999999999997531       111111      11233445999999999999999999999999999998753 46


Q ss_pred             CcCCCCCCChhhhhcCCcEEEcCC-ccccccCCCCch-h------h-hhhhcCCCeEEeeeCCCCCCccCCCCCCCC
Q 010187          447 ELWQPGALPPALLALDGNVHPIDP-SWHVAELGQRSL-E------A-HEETLKSAAVLHFSGPAKPWLEIGLPEKRP  514 (516)
Q Consensus       447 ~~~DQd~LN~~ll~F~~~~~~L~~-~WN~~~lgy~~~-~------~-~~~~i~~~~IIHy~G~~KPW~~~~~~~yr~  514 (516)
                      .++|||+||   ++|.+++++||+ +||+++ |+... .      . .....++|+||||+|+.|||...+.++||+
T Consensus       190 ~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~  262 (276)
T 3tzt_A          190 LLPDQDILN---AMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTS  262 (276)
T ss_dssp             ----CHHHH---HHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHH
T ss_pred             cCCChhHHH---HHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHH
Confidence            789999999   589999999999 999986 33210 0      0 123457899999999999999999999875

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		516
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	7e-24
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	1e-05

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 99.2 bits (246), Expect = 7e-24
 Identities = 49/318 (15%), Positives = 97/318 (30%), Gaps = 72/318 (22%)

Query: 212 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 269
            +V   D+       V   S         ++ FH++    +     +  A        + 
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 270 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 329
                  +                   ++ +  N++H                    +S+
Sbjct: 61  F---IDVNPED----------------FAGFPLNIRH--------------------ISI 81

Query: 330 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 389
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +            
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE---- 137

Query: 390 KYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELW 449
            YK  +  +              +  G+ +++L+ WRR +I     +W++   K  ++  
Sbjct: 138 GYKQKIGMADG---------EYYFNAGVLLINLKKWRRHDIFKMSSEWVE-QYKDVMQYQ 187

Query: 450 QPGALPPALLALDGNVHPIDPSWHVAELG-------------QRSLEAHEETLKSAAVLH 496
               L        G V   +  ++                           T+   AV H
Sbjct: 188 DQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSH 244

Query: 497 FSGPAKPWLEIGLPEKRP 514
           + GPAKPW          
Sbjct: 245 YCGPAKPWHRDCTAWGAE 262

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		516
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.91
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	94.22
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	90.6

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=3.7e-41  Score=334.14  Aligned_cols=246  Identities=20%  Similarity=0.302  Sum_probs=182.2

Q ss_pred             ceEEEEeCCcc--hhHHHHHHHHhhcCCCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHHH
Q 010187          211 HHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKE  288 (516)
Q Consensus       211 ihIv~~sDn~l--aasVvI~Siv~Ns~~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl~  288 (516)
                      ||||+++|+.|  .++|+|+|++.|+++ .+++|||++++++.+..+.....            ++.      .++.+  
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~------------~~~------~~~~i--   59 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN------------LRG------GGGNI--   59 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT------------SGG------GTTTE--
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH------------HHH------cCCeE--
Confidence            69999999865  389999999998876 57999999999985432111110            000      00000  


Q ss_pred             HHHHHHHHHHHhhccCcccccccchhhhhhcccCCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccCC
Q 010187          289 MLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDL  368 (516)
Q Consensus       289 ~l~~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~~S~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL  368 (516)
                                .+      ..++.+ .+.. . ....+++|.++|+||++|++||+++||||||+|+||.+||++||++|+
T Consensus        60 ----------~~------~~~~~~-~~~~-~-~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~  120 (282)
T d1ga8a_          60 ----------RF------IDVNPE-DFAG-F-PLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL  120 (282)
T ss_dssp             ----------EE------EECCGG-GGTT-S-CCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC
T ss_pred             ----------EE------EECCch-Hhcc-c-cccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhccc
Confidence                      01      111100 0100 0 123467899999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCCc
Q 010187          369 NGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLEL  448 (516)
Q Consensus       369 ~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~~~  448 (516)
                      +++.+|||.|+....    ...+...+         ++.++.+||||||||+|+++||++++++++.++++++.. ...+
T Consensus       121 ~~~~~aa~~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~-~~~~  186 (282)
T d1ga8a_         121 GDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD-VMQY  186 (282)
T ss_dssp             TTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-TCSS
T ss_pred             ccceeeeehhhhhhh----hhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhccc-Cccc
Confidence            999999999975421    11222222         344568999999999999999999999999999998753 5778


Q ss_pred             CCCCCCChhhhhcCCcEEEcCCccccccCCCCc----------h---hhhhhhcCCCeEEeeeCCCCCCccCCCCCCC
Q 010187          449 WQPGALPPALLALDGNVHPIDPSWHVAELGQRS----------L---EAHEETLKSAAVLHFSGPAKPWLEIGLPEKR  513 (516)
Q Consensus       449 ~DQd~LN~~ll~F~~~~~~L~~~WN~~~lgy~~----------~---~~~~~~i~~~~IIHy~G~~KPW~~~~~~~yr  513 (516)
                      +|||+||   .+|.|++..||.+||++..+|..          .   ....+...+++||||+|+.|||+..+.+.++
T Consensus       187 ~DQd~LN---~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~  261 (282)
T d1ga8a_         187 QDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGA  261 (282)
T ss_dssp             THHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTT
T ss_pred             CchhHHH---HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhH
Confidence            9999999   58999999999999997532210          0   0023456789999999999999988877765

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure